Strain identifier

BacDive ID: 11506

Type strain: Yes

Species: Paenibacillus peoriae

Strain Designation: BD-57, B-14750

Strain history: CIP <- 1993, L.K. Nakamura, NRRL: strain B-14750 <- 1946, B. Delaporte, Inst. Pasteur, Paris, France: strain BD-57

NCBI tax ID(s): 1087481 (strain), 59893 (species)

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General

@ref: 3254

BacDive-ID: 11506

DSM-Number: 8320

keywords: 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Paenibacillus peoriae BD-57 is a facultative anaerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
1087481strain
59893species

strain history

@refhistory
3254<- NRRL, BD-57 <- B. Delaporte, 11.B.9
121668CIP <- 1993, L.K. Nakamura, NRRL: strain B-14750 <- 1946, B. Delaporte, Inst. Pasteur, Paris, France: strain BD-57

doi: 10.13145/bacdive11506.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus peoriae
  • full scientific name: Paenibacillus peoriae (Montefusco et al. 1993) Heyndrickx et al. 1996

  • synonyms

    • @ref: 20215
    • synonym: Bacillus peoriae

@ref: 3254

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus peoriae

full scientific name: Paenibacillus peoriae (Montefusco et al. 1993) Heyndrickx et al. 1996

strain designation: BD-57, B-14750

type strain: yes

Morphology

cell morphology

  • @ref: 121668
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3254NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
38148MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
121668CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3254positivegrowth30mesophilic
38148positivegrowth30mesophilic
121668positivegrowth30-37mesophilic
121668nogrowth10psychrophilic
121668nogrowth45thermophilic
121668nogrowth55thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 121668
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 121668
  • spore formation: yes

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin+builds acid from27613
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
121668citrate+carbon source16947
121668nitrate-reduction17632
121668nitrite-reduction16301
121668nitrate+respiration17632

metabolite production

  • @ref: 121668
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 121668
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
121668oxidase-
121668alcohol dehydrogenase-1.1.1.1
121668gelatinase+
121668amylase+
121668caseinase+3.4.21.50
121668catalase+1.11.1.6
121668lipase+
121668lysine decarboxylase-4.1.1.18
121668ornithine decarboxylase-4.1.1.17
121668urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121668---+++--+/-++++-+/---+-+/--+/-+++++++++---+++-+-------+--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
3254soil
121668Environment, SoilCôte d'IvoireCIVAfrica1946

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_373.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_258;97_282;98_314;99_373&stattab=map
  • Last taxonomy: Paenibacillus
  • 16S sequence: AJ320494
  • Sequence Identity:
  • Total samples: 9665
  • soil counts: 4375
  • aquatic counts: 744
  • animal counts: 2534
  • plant counts: 2012

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
32541Risk group (German classification)
1216681Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Paenibacillus peoriae gene for 16S rRNA, partial sequenceAB0731861506ena1087481
20218Paenibacillus peoriae partial 16S rRNA gene, strain DSM 8320TAJ3204941501ena1087481
20218Paenibacillus peoriae DNA for 16S rRNAD784761437ena1087481
20218Paenibacillus peoriae gene for 16S rRNA, partial sequence, strain: NBRC 15541AB6808941481ena59893

External links

@ref: 3254

culture collection no.: DSM 8320, LMG 14832, NRRL B-14750, CIP 103812, ATCC 51925

straininfo link

  • @ref: 80738
  • straininfo: 9970

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny23912443Paenibacillus beijingensis sp. nov., a nitrogen-fixing species isolated from wheat rhizosphere soil.Wang LY, Li J, Li QX, Chen SFAntonie Van Leeuwenhoek10.1007/s10482-013-9974-52013Aerobiosis, Bacterial Typing Techniques, Base Composition, Carbon/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Locomotion, Molecular Sequence Data, Nitrogen/metabolism, Nucleic Acid Hybridization, Oxidoreductases, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Triticum/microbiologyMetabolism
Phylogeny26063444Paenibacillus enshidis sp. nov., Isolated from the Nodules of Robinia pseudoacacia L.Yin J, He D, Li X, Zeng X, Tian M, Cheng GCurr Microbiol10.1007/s00284-015-0854-22015Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Locomotion, Microscopy, Electron, Scanning, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/*isolation & purification/physiology, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Robinia/*microbiology, Root Nodules, Plant/*microbiology, Sequence Analysis, DNA, Spores, Bacterial/cytology, Vitamin K 2/analysisTranscriptome
Phylogeny26268929Paenibacillus kyungheensis sp. nov., isolated from flowers of magnolia.Siddiqi MZ, Siddiqi MH, Im WT, Kim YJ, Yang DCInt J Syst Evol Microbiol10.1099/ijsem.0.0005212015Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Flowers/*microbiology, Magnolia/*microbiology, Nucleic Acid Hybridization, Paenibacillus/*classification/genetics/isolation & purification, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Spermidine/chemistry, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3254Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8320)https://www.dsmz.de/collection/catalogue/details/culture/DSM-8320
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38148Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15651
68371Automatically annotated from API 50CH acid
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80738Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9970.1StrainInfo: A central database for resolving microbial strain identifiers
121668Curators of the CIPCollection of Institut Pasteur (CIP 103812)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103812