Strain identifier

BacDive ID: 11489

Type strain: No

Species: Paenibacillus validus

Strain Designation: Q1

Strain history: CIP <- 1991, F. Pichinoty, CNRS, Marseille, France: strain Q 1, Bacillus gordonae

NCBI tax ID(s): 44253 (species)

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General

@ref: 2157

BacDive-ID: 11489

DSM-Number: 5395

keywords: 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, Gram-positive, motile, rod-shaped

description: Paenibacillus validus Q1 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 44253
  • Matching level: species

strain history

@refhistory
2157<- F. Pichinoty; Q1
343021991, F. Pichinoty, CNRS, Marseille, France: strain Q 1, Bacillus gordonae
123788CIP <- 1991, F. Pichinoty, CNRS, Marseille, France: strain Q 1, Bacillus gordonae

doi: 10.13145/bacdive11489.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Paenibacillus
  • species: Paenibacillus validus
  • full scientific name: Paenibacillus validus (Nakamura 1984 ex Bredemann and Heigener 1935) Ash et al. 1994

  • synonyms

    @refsynonym
    20215Paenibacillus gordonae
    20215Bacillus gordonae
    20215Bacillus validus

@ref: 2157

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Paenibacillus

species: Paenibacillus validus

full scientific name: Paenibacillus validus (Nakamura 1984) Ash et al. 1994 emend. Heyndrickx et al. 1995

strain designation: Q1

type strain: no

Morphology

cell morphology

  • @ref: 123788
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2157NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
34302MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
123788CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
2157positivegrowth30mesophilic
34302positivegrowth30mesophilic
123788positivegrowth30-45
123788nogrowth10psychrophilic
123788nogrowth55thermophilic

culture pH

  • @ref: 123788
  • ability: no
  • type: growth
  • pH: 6

Physiology and metabolism

oxygen tolerance

  • @ref: 123788
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 123788
  • spore formation: yes

halophily

@refsaltgrowthtested relationconcentration
123788NaClpositivegrowth0 %
123788NaClnogrowth2 %
123788NaClnogrowth4 %
123788NaClnogrowth6 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol+builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose-fermentation30849
68368amygdalin-fermentation27613
68368melibiose-fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol-fermentation16899
68368D-glucose-fermentation17634
68368gelatin-hydrolysis5291
68368tryptophan-energy source27897
68368urea-hydrolysis16199
68368citrate-assimilation16947
68368ornithine-degradation18257
68368lysine-degradation25094
68368arginine-hydrolysis29016
123788nitrate+reduction17632
123788nitrite-reduction16301
123788nitrate-respiration17632

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
12378835581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
123788oxidase+
123788alcohol dehydrogenase-1.1.1.1
123788gelatinase-
123788amylase+
123788DNase+
123788caseinase-3.4.21.50
123788catalase+1.11.1.6
123788lecithinase-
123788lysine decarboxylase-4.1.1.18
123788ornithine decarboxylase-4.1.1.17
123788urease+3.5.1.5

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARA
49267---------+----------

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
49267-+---++----+++--+-+------+--+--++-----------------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
123788+++++-+++++---+-+-++-++------+++++++-----+------++----------+-++-----------+---++-----+---------+-+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
2157soilSpainESPEurope
123788Environment, Soil enriched with quinateSpainESPEurope

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
21571Risk group (German classification)
1237881Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Paenibacillus validus clone BGORDO-1R 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAF478099441ena44253
20218B.gordonae 16S ribosomal RNAX606171420ena44253

GC content

  • @ref: 2157
  • GC-content: 54.6

External links

@ref: 2157

culture collection no.: DSM 5395, ATCC 29948, LMG 9817, NCIB 12553, CCUG 28520, NRRL B-14484, CIP R 1062, CIP 106931, CIP 103498, NCIMB 12553

straininfo link

  • @ref: 80723
  • straininfo: 311032

literature

  • topic: Phylogeny
  • Pubmed-ID: 3674781
  • title: [Bacillus gordonae sp. nov., a new species belonging to the second morphological group, degrading various aromatic compounds].
  • authors: Pichinoty F, Waterbury JB, Mandel M, Asselineau J
  • journal: Ann Inst Pasteur Microbiol (1985)
  • DOI: 10.1016/s0769-2609(86)80006-0
  • year: 1986
  • mesh: Bacillus/classification/metabolism/*ultrastructure, Microscopy, Electron
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2157Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5395)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5395
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34302Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15302
49267Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 28520)https://www.ccug.se/strain?id=28520
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
80723Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID311032.1StrainInfo: A central database for resolving microbial strain identifiers
123788Curators of the CIPCollection of Institut Pasteur (CIP 103498)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103498