Strain identifier

BacDive ID: 11456

Type strain: Yes

Species: Cohnella boryungensis

Strain Designation: BR-29

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 768479 (species)

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General

@ref: 18249

BacDive-ID: 11456

DSM-Number: 26489

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, rod-shaped

description: Cohnella boryungensis BR-29 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 768479
  • Matching level: species

strain history

@refhistory
18249<- KCTC; KCTC 13735
67771<- JH Yoon, KRIBB

doi: 10.13145/bacdive11456.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Cohnella
  • species: Cohnella boryungensis
  • full scientific name: Cohnella boryungensis Yoon and Jung 2012

@ref: 18249

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Cohnella

species: Cohnella boryungensis

full scientific name: Cohnella boryungensis Yoon and Jung 2012

strain designation: BR-29

type strain: yes

Morphology

cell morphology

@refcell shapemotilityflagellum arrangementgram stainconfidence
67771rod-shapedyesperitrichous
67771positive
69480yes98.225
69480positive100

colony morphology

@refincubation period
182493-7 days
620292 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
18249CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
18249COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
18249positivegrowth28mesophilic
62029positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
62029aerobe
67771aerobe

spore formation

@reftype of sporespore formationconfidence
67771endosporeyes
69481yes100
69480yes100

observation

  • @ref: 67771
  • observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
18249soilBoryung, coastRepublic of KoreaKORAsia
62029SoilBoryungRepublic of KoreaKORAsia2008
67771From soil around a coast at BoryungRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_24739.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_9809;97_15029;98_18604;99_24739&stattab=map
  • Last taxonomy: Cohnella boryungensis subclade
  • 16S sequence: HM061613
  • Sequence Identity:
  • Total samples: 16
  • soil counts: 15
  • plant counts: 1

Safety information

risk assessment

  • @ref: 18249
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18249
  • description: Cohnella boryungensis strain BR-29 16S ribosomal RNA gene, partial sequence
  • accession: HM061613
  • length: 1476
  • database: ena
  • NCBI tax ID: 768479

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cohnella boryungensis strain DSM 26489768479.3wgspatric768479
66792Cohnella boryungensis DSM 264892901166929draftimg768479

GC content

@refGC-contentmethod
1824954.9
6777154.9high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileyes87.726yes
flagellatedyes79.521no
gram-positiveyes75.831no
anaerobicno98.702yes
halophileno96.915no
spore-formingyes96.048yes
glucose-utilyes92.494no
aerobicyes86.711yes
glucose-fermentno86.951no
thermophileno99.366yes

External links

@ref: 18249

culture collection no.: DSM 26489, CCUG 59598, KCTC 13735

straininfo link

  • @ref: 80693
  • straininfo: 402136

literature

  • topic: Phylogeny
  • Pubmed-ID: 22200782
  • title: Cohnella boryungensis sp. nov., isolated from soil.
  • authors: Yoon JH, Jung YT
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-011-9691-x
  • year: 2011
  • mesh: Bacillales/*classification/genetics/*isolation & purification/physiology, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Spores, Bacterial/cytology, Temperature, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
18249Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26489)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26489
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
62029Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 59598)https://www.ccug.se/strain?id=59598
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
80693Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402136.1StrainInfo: A central database for resolving microbial strain identifiers