Strain identifier
BacDive ID: 11454
Type strain: 
Species: Cohnella suwonensis
Strain Designation: WD2-19
Strain history: <- NBRC; NBRC 106485
NCBI tax ID(s): 696072 (species)
version 8.1 (current version)
General
@ref: 18138
BacDive-ID: 11454
DSM-Number: 25950
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Cohnella suwonensis WD2-19 is a spore-forming, mesophilic, motile bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 696072
- Matching level: species
strain history
- @ref: 18138
- history: <- NBRC; NBRC 106485
doi: 10.13145/bacdive11454.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Cohnella
- species: Cohnella suwonensis
- full scientific name: Cohnella suwonensis Kim et al. 2012
@ref: 18138
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Cohnella
species: Cohnella suwonensis
full scientific name: Cohnella suwonensis Kim et al. 2012
strain designation: WD2-19
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.606 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 18138
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 18138
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 99 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 18138
- sample type: soil
- geographic location: Suwon region
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_114866.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_11383;97_13781;98_16988;99_114866&stattab=map
- Last taxonomy: Cohnella suwonensis subclade
- 16S sequence: GU181267
- Sequence Identity:
- Total samples: 93
- soil counts: 84
- aquatic counts: 6
- animal counts: 1
- plant counts: 2
Safety information
risk assessment
- @ref: 18138
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18138
- description: Cohnella suwonensis strain WD2-19 16S ribosomal RNA gene, partial sequence
- accession: GU181267
- length: 1454
- database: ena
- NCBI tax ID: 696072
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Cohnella suwonensis strain DSM 25950 | 696072.3 | wgs | patric | 696072 |
| 66792 | Cohnella suwonensis DSM 25950 | 2913457851 | draft | img | 696072 |
GC content
- @ref: 18138
- GC-content: 55.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 99 | no |
| gram-positive | yes | 82.681 | no |
| anaerobic | no | 99.438 | no |
| halophile | no | 96.46 | no |
| spore-forming | yes | 93.05 | no |
| glucose-util | yes | 91.117 | no |
| thermophile | no | 99.635 | no |
| flagellated | yes | 84.316 | no |
| motile | yes | 86.927 | no |
| aerobic | yes | 86.371 | no |
| glucose-ferment | no | 92.321 | no |
External links
@ref: 18138
culture collection no.: DSM 25950, KACC 13347, NBRC 106485
straininfo link
- @ref: 80692
- straininfo: 400123
literature
- topic: Phylogeny
- Pubmed-ID: 22203570
- title: Cohnella soli sp. nov. and Cohnella suwonensis sp. nov. Isolated from soil samples in Korea.
- authors: Kim SJ, Weon HY, Kim YS, Kwon SW
- journal: J Microbiol
- DOI: 10.1007/s12275-011-1071-8
- year: 2011
- mesh: Bacillales/*classification/genetics/*isolation & purification, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18138 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25950) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25950 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 80692 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400123.1 | StrainInfo: A central database for resolving microbial strain identifiers |