Strain identifier

BacDive ID: 11444

Type strain: Yes

Species: Cohnella soli

Strain Designation: YM2-7

Strain history: <- NBRC; NBRC 106486

NCBI tax ID(s): 425005 (species)

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General

@ref: 18139

BacDive-ID: 11444

DSM-Number: 25951

keywords: 16S sequence, Bacteria, mesophilic

description: Cohnella soli YM2-7 is a mesophilic bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 425005
  • Matching level: species

strain history

  • @ref: 18139
  • history: <- NBRC; NBRC 106486

doi: 10.13145/bacdive11444.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Paenibacillaceae
  • genus: Cohnella
  • species: Cohnella soli
  • full scientific name: Cohnella soli Kim et al. 2012

@ref: 18139

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Paenibacillaceae

genus: Cohnella

species: Cohnella soli

full scientific name: Cohnella soli Kim et al. 2012

strain designation: YM2-7

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 18139
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 18139
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 18139
  • sample type: soil
  • geographic location: Yeogi Mountain
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_114865.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_9809;97_58538;98_77698;99_114865&stattab=map
  • Last taxonomy: Cohnella soli subclade
  • 16S sequence: GU181266
  • Sequence Identity:
  • Total samples: 22
  • soil counts: 20
  • plant counts: 2

Safety information

risk assessment

  • @ref: 18139
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18139
  • description: Cohnella soli strain YM2-7 16S ribosomal RNA gene, partial sequence
  • accession: GU181266
  • length: 1475
  • database: ena
  • NCBI tax ID: 425005

GC content

  • @ref: 18139
  • GC-content: 52.5

External links

@ref: 18139

culture collection no.: DSM 25951, KACC 13346, NBRC 106486

straininfo link

  • @ref: 80682
  • straininfo: 403053

literature

  • topic: Phylogeny
  • Pubmed-ID: 22203570
  • title: Cohnella soli sp. nov. and Cohnella suwonensis sp. nov. Isolated from soil samples in Korea.
  • authors: Kim SJ, Weon HY, Kim YS, Kwon SW
  • journal: J Microbiol
  • DOI: 10.1007/s12275-011-1071-8
  • year: 2011
  • mesh: Bacillales/*classification/genetics/*isolation & purification, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
18139Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25951)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25951
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80682Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID403053.1StrainInfo: A central database for resolving microbial strain identifiers