Strain identifier

BacDive ID: 11331

Type strain: Yes

Species: Massilia aerilata

Strain Designation: 5516S-11

Strain history: <- S.-W. Kwon; 5516S-11 {2007} <- H.-Y. Weon

NCBI tax ID(s): 453817 (species)

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General

@ref: 8000

BacDive-ID: 11331

DSM-Number: 19289

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Massilia aerilata 5516S-11 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from air.

NCBI tax id

  • NCBI tax id: 453817
  • Matching level: species

strain history

  • @ref: 8000
  • history: <- S.-W. Kwon; 5516S-11 {2007} <- H.-Y. Weon

doi: 10.13145/bacdive11331.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Oxalobacteraceae
  • genus: Massilia
  • species: Massilia aerilata
  • full scientific name: Massilia aerilata Weon et al. 2008

  • synonyms

    • @ref: 20215
    • synonym: Telluria aerilata

@ref: 8000

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Massilia

species: Massilia aerilata

full scientific name: Massilia aerilata Weon et al. 2008

strain designation: 5516S-11

type strain: yes

Morphology

cell morphology

  • @ref: 32389
  • gram stain: negative
  • cell length: 5.35 µm
  • cell width: 2.25 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 32389
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8000
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8000positivegrowth30mesophilic
32389positivegrowth05-35
32389positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
32389positivegrowth05-09alkaliphile
32389positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 32389
  • oxygen tolerance: aerobe

halophily

  • @ref: 32389
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
32389370543-hydroxybutyrate+carbon source
3238916449alanine+carbon source
3238922599arabinose+carbon source
3238917234glucose+carbon source
3238928087glycogen+carbon source
3238927570histidine+carbon source
3238925115malate+carbon source
3238917306maltose+carbon source
3238937684mannose+carbon source
3238918401phenylacetate+carbon source
3238926271proline+carbon source
3238917272propionate+carbon source
3238917822serine+carbon source
3238917632nitrate+reduction
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose+builds acid from
6837117814salicin-builds acid from
6837118305arbutin-builds acid from
6837159640N-acetylglucosamine-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
32389catalase+1.11.1.6
32389cytochrome oxidase+1.9.3.1
32389urease+3.5.1.5
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
8000-----+--+++--+---+-++

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
8000----+------+/--+---------+/--+/--+/-+-------++-+----------

Isolation, sampling and environmental information

isolation

  • @ref: 8000
  • sample type: air
  • geographic location: Suwon
  • country: Republic of Korea
  • origin.country: KOR
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Air

Safety information

risk assessment

  • @ref: 8000
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8000
  • description: Massilia aerilata strain 5516S-11 16S ribosomal RNA gene, partial sequence
  • accession: EF688526
  • length: 1406
  • database: ena
  • NCBI tax ID: 453817

GC content

@refGC-contentmethod
800068.9high performance liquid chromatography (HPLC)
3238968.9

External links

@ref: 8000

culture collection no.: DSM 19289, KACC 12505

straininfo link

  • @ref: 80564
  • straininfo: 402106

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18523189Massilia aerilata sp. nov., isolated from an air sample.Weon HY, Kim BY, Son JA, Jang HB, Hong SK, Go SJ, Kwon SWInt J Syst Evol Microbiol10.1099/ijs.0.65419-02008*Air Microbiology, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/*classification/genetics/*isolation & purification/physiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny22140160Massilia tieshanensis sp. nov., isolated from mining soil.Du Y, Yu X, Wang GInt J Syst Evol Microbiol10.1099/ijs.0.034306-02011Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/*classification/genetics/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analysisGenetics
Phylogeny26220552Massilia arvi sp. nov., isolated from fallow-land soil previously cultivated with Brassica oleracea, and emended description of the genus Massilia.Singh H, Du J, Won K, Yang JE, Yin C, Kook M, Yi THInt J Syst Evol Microbiol10.1099/ijsem.0.0004772015Agriculture, Bacterial Typing Techniques, Base Composition, Brassica, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/*classification/genetics/isolation & purification, Phosphatidylethanolamines, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryGenetics
Phylogeny26449383Massilia putida sp. nov., a dimethyl disulfide-producing bacterium isolated from wolfram mine tailing.Feng GD, Yang SZ, Li HP, Zhu HHInt J Syst Evol Microbiol10.1099/ijsem.0.0006702015Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Disulfides/metabolism, Fatty Acids/chemistry, *Mining, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tungsten, Ubiquinone/chemistryGenetics
Phylogeny27334790Massiliapinisoli sp. nov., isolated from forest soil.Altankhuu K, Kim JInt J Syst Evol Microbiol10.1099/ijsem.0.0012492016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Forests, Nucleic Acid Hybridization, Oxalobacteraceae/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny32511088Massilia arenosa sp. nov., isolated from the soil of a cultivated maize field.Raths R, Peta V, Bucking HInt J Syst Evol Microbiol10.1099/ijsem.0.0042662020Bacterial Typing Techniques, Base Composition, California, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oxalobacteraceae/*classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, *Zea maysTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8000Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19289)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19289
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32389Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2861428776041
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
80564Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402106.1StrainInfo: A central database for resolving microbial strain identifiers