Strain identifier
BacDive ID: 11291
Type strain: 
Species: Oleispira antarctica
Strain Designation: RB-8
Strain history: <- P. N. Golyshin, GBF; RB-8 <- M. M. Yakimov
NCBI tax ID(s): 698738 (strain), 188908 (species)
version 8.1 (current version)
General
@ref: 5579
BacDive-ID: 11291
DSM-Number: 14852
keywords: genome sequence, 16S sequence, Bacteria, psychrophilic
description: Oleispira antarctica RB-8 is a psychrophilic bacterium that was isolated from seawater.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 188908 | species |
| 698738 | strain |
strain history
- @ref: 5579
- history: <- P. N. Golyshin, GBF; RB-8 <- M. M. Yakimov
doi: 10.13145/bacdive11291.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Oceanospirillaceae
- genus: Oleispira
- species: Oleispira antarctica
- full scientific name: Oleispira antarctica Yakimov et al. 2003
@ref: 5579
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Oceanospirillaceae
genus: Oleispira
species: Oleispira antarctica
full scientific name: Oleispira antarctica Yakimov et al. 2003
strain designation: RB-8
type strain: yes
Culture and growth conditions
culture medium
- @ref: 5579
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514; with strain-specific modifications) Composition: NaCl 19.45 g/l Sodium pyruvate 10.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 5579
- growth: positive
- type: growth
- temperature: 15
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 5579
- sample type: seawater
- geographic location: Ross sea, Rod Bay
- continent: Australia and Oceania
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_3757.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_306;96_1932;97_2323;98_2866;99_3757&stattab=map
- Last taxonomy: Oleispira antarctica
- 16S sequence: AJ426420
- Sequence Identity:
- Total samples: 1308
- soil counts: 36
- aquatic counts: 1145
- animal counts: 95
- plant counts: 32
Safety information
risk assessment
- @ref: 5579
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5579
- description: Oleispira antarctica partial 16S rRNA gene, strain RB-8T
- accession: AJ426420
- length: 1437
- database: ena
- NCBI tax ID: 698738
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Oleispira antarctica RB-8 | 698738.7 | complete | patric | 698738 |
| 66792 | Oleispira antarctica RB-8 | 2667527456 | draft | img | 698738 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 98.009 | no |
| anaerobic | no | 97.784 | no |
| halophile | yes | 80.729 | no |
| spore-forming | no | 95.439 | no |
| glucose-util | yes | 51.933 | no |
| thermophile | no | 99.755 | yes |
| flagellated | yes | 88.998 | no |
| motile | yes | 88.145 | no |
| aerobic | yes | 91.896 | no |
| glucose-ferment | no | 89.7 | no |
External links
@ref: 5579
culture collection no.: DSM 14852, LMG 21398
straininfo link
- @ref: 80524
- straininfo: 86264
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12807200 | Oleispira antarctica gen. nov., sp. nov., a novel hydrocarbonoclastic marine bacterium isolated from Antarctic coastal sea water. | Yakimov MM, Giuliano L, Gentile G, Crisafi E, Chernikova TN, Abraham WR, Lunsdorf H, Timmis KN, Golyshin PN | Int J Syst Evol Microbiol | 10.1099/ijs.0.02366-0 | 2003 | Aerobiosis, Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Ribosomal, Fatty Acids/analysis, Hydrocarbons/*metabolism, Molecular Sequence Data, Phylogeny, Pseudomonadaceae/chemistry/*classification/genetics/growth & development, RNA, Ribosomal, 16S, Seawater/*microbiology, Sequence Analysis, DNA | Genetics |
| Phylogeny | 18768616 | Oceaniserpentilla haliotis gen. nov., sp. nov., a marine bacterium isolated from haemolymph serum of blacklip abalone. | Schlosser A, Lipski A, Schmalfuss J, Kugler F, Beckmann G | Int J Syst Evol Microbiol | 10.1099/ijs.0.65767-0 | 2008 | Aerobiosis, Animals, Bacteria/*classification/genetics/*isolation & purification, Bacterial Physiological Phenomena, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gastropoda/*microbiology, Genes, rRNA, Locomotion, Molecular Sequence Data, Oxidoreductases/metabolism, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Serum/*microbiology, Temperature | Enzymology |
| Metabolism | 26912198 | Biodegradation potentiality of psychrophilic bacterial strain Oleispira antarctica RB-8(T). | Gentile G, Bonsignore M, Santisi S, Catalfamo M, Giuliano L, Genovese L, Yakimov MM, Denaro R, Genovese M, Cappello S | Mar Pollut Bull | 10.1016/j.marpolbul.2016.02.041 | 2016 | Bacteria/classification/genetics/*metabolism, *Biodegradation, Environmental, Hydrocarbons/*metabolism, Oils, Petroleum/metabolism, Water Pollutants, Chemical/*metabolism | Phylogeny |
| 29755436 | The Effect of Hydrostatic Pressure on Enrichments of Hydrocarbon Degrading Microbes From the Gulf of Mexico Following the Deepwater Horizon Oil Spill. | Marietou A, Chastain R, Beulig F, Scoma A, Hazen TC, Bartlett DH | Front Microbiol | 10.3389/fmicb.2018.00808 | 2018 | |||
| Phylogeny | 30274157 | Implementing Morpholino-Based Nucleic Acid Sensing on a Portable Surface Plasmon Resonance Instrument for Future Application in Environmental Monitoring. | Bagi A, Soelberg SD, Furlong CE, Baussant T | Sensors (Basel) | 10.3390/s18103259 | 2018 | Environmental Monitoring/*instrumentation, Immunomagnetic Separation, Morpholinos/*chemistry, Oceanospirillaceae/genetics, RNA, Ribosomal, 16S/*analysis/chemistry/genetics, Streptavidin/chemistry, Surface Plasmon Resonance/*instrumentation/*methods | |
| Metabolism | 32090431 | Protein expression in the obligate hydrocarbon-degrading psychrophile Oleispira antarctica RB-8 during alkane degradation and cold tolerance. | Gregson BH, Metodieva G, Metodiev MV, Golyshin PN, McKew BA | Environ Microbiol | 10.1111/1462-2920.14956 | 2020 | Alkanes/*metabolism, *Biodegradation, Environmental, Chromatography, Liquid, Cold Temperature, Cytochrome P-450 CYP4A/genetics, Fatty Acid Desaturases/genetics, Fatty Acids/metabolism, Oceanospirillaceae/genetics/growth & development/*metabolism, Oxidation-Reduction, Oxidoreductases/genetics, *Petroleum Pollution, Phylogeny, Proteomics, Seawater/microbiology, Tandem Mass Spectrometry | Phylogeny |
| 32740715 | Phenotypic Variations of Oleispira antarctica RB-8(T) in Different Growth Conditions. | Gentile G, Maimone G, La Ferla R, Azzaro M, Catalfamo M, Genovese M, Santisi S, Maldani M, Macri A, Cappello S | Curr Microbiol | 10.1007/s00284-020-02143-8 | 2020 | Bacteria/genetics, Biodegradation, Environmental, Biological Variation, Population, *Oceanospirillaceae | ||
| 34705547 | Antarctic Polyester Hydrolases Degrade Aliphatic and Aromatic Polyesters at Moderate Temperatures. | Blazquez-Sanchez P, Engelberger F, Cifuentes-Anticevic J, Sonnendecker C, Grinen A, Reyes J, Diez B, Guixe V, Richter PK, Zimmermann W, Ramirez-Sarmiento CA | Appl Environ Microbiol | 10.1128/AEM.01842-21 | 2021 | Antarctic Regions, *Hydrolases/genetics, Hydrolysis, Polyesters, *Polyethylene Terephthalates, Temperature |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5579 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14852) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14852 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 80524 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID86264.1 | StrainInfo: A central database for resolving microbial strain identifiers |