Strain identifier

BacDive ID: 11242

Type strain: Yes

Species: Nocardiopsis coralliicola

Strain history: DSM 45611 <-- J. Li; South China Sea Inst. of Oceanol., CAS, China; SCSIO 10427.

NCBI tax ID(s): 1048357 (species)

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General

@ref: 17764

BacDive-ID: 11242

DSM-Number: 45611

keywords: 16S sequence, Bacteria, spore-forming, mesophilic

description: Nocardiopsis coralliicola DSM 45611 is a spore-forming, mesophilic bacterium that was isolated from gorgonian coral Menella praelonga.

NCBI tax id

  • NCBI tax id: 1048357
  • Matching level: species

strain history

@refhistory
17764<- J. Li, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China; SCSIO 10427T
67770DSM 45611 <-- J. Li; South China Sea Inst. of Oceanol., CAS, China; SCSIO 10427.

doi: 10.13145/bacdive11242.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Nocardiopsidaceae
  • genus: Nocardiopsis
  • species: Nocardiopsis coralliicola
  • full scientific name: Nocardiopsis coralliicola Li et al. 2012

@ref: 17764

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiopsaceae

genus: Nocardiopsis

species: Nocardiopsis coralliicola

full scientific name: Nocardiopsis coralliicola Li et al. 2012

type strain: yes

Morphology

pigmentation

  • @ref: 30410
  • production: yes

multimedia

  • @ref: 17764
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_45611.jpg
  • caption: Medium 83 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17764CZAPEK PEPTONE AGAR (DSMZ Medium 83)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium83.pdf
17764BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
17764GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17764positivegrowth28mesophilic
30410positivegrowth20-45
67770positivegrowth28mesophilic

culture pH

  • @ref: 30410
  • ability: positive
  • type: growth
  • pH: 07-10
  • PH range: alkaliphile

Physiology and metabolism

spore formation

  • @ref: 30410
  • spore formation: yes

halophily

  • @ref: 30410
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <18 %

observation

  • @ref: 67770
  • observation: quinones: MK-10(H6), MK-10(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3041022599arabinose+carbon source
3041028757fructose+carbon source
3041028260galactose+carbon source
3041017234glucose+carbon source
3041029864mannitol+carbon source
3041037684mannose+carbon source
3041033942ribose+carbon source
3041017632nitrate+reduction

enzymes

@refvalueactivityec
30410catalase+1.11.1.6
30410gelatinase+

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
17764gorgonian coral Menella praelongaMenella praelongaGuangxi province, Weizhou IslandChinaCHNAsia
67770Gorgonian coral (Menella praelonga) from Weizhou IslandMenella praelongaGuangxi ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Cnidaria (Corals)

taxonmaps

  • @ref: 69479
  • File name: preview.99_15075.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_152;96_2754;97_3390;98_11403;99_15075&stattab=map
  • Last taxonomy: Nocardiopsis coralliicola subclade
  • 16S sequence: JN006759
  • Sequence Identity:
  • Total samples: 13
  • soil counts: 3
  • animal counts: 8
  • plant counts: 2

Sequence information

16S sequences

  • @ref: 17764
  • description: Nocardiopsis coralliicola strain SCSIO 10427 16S ribosomal RNA gene, partial sequence
  • accession: JN006759
  • length: 1401
  • database: ena
  • NCBI tax ID: 1048357

GC content

@refGC-contentmethod
1776469.5high performance liquid chromatography (HPLC)
3041069.5

External links

@ref: 17764

culture collection no.: DSM 45611, CCTCC AA 2011010, JCM 31209, SCSIO 10427

straininfo link

  • @ref: 80477
  • straininfo: 406837

literature

  • topic: Phylogeny
  • Pubmed-ID: 21890725
  • title: Nocardiopsis coralliicola sp. nov., isolated from the gorgonian coral, Menella praelonga.
  • authors: Li J, Yang J, Zhu WY, He J, Tian XP, Xie Q, Zhang S, Li WJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.035402-0
  • year: 2011
  • mesh: Actinomycetales/*classification/genetics/*isolation & purification, Animals, Anthozoa/*microbiology, Bacterial Typing Techniques, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
17764Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45611)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45611
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30410Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2674728776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80477Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406837.1StrainInfo: A central database for resolving microbial strain identifiers