Strain identifier
BacDive ID: 11089
Type strain: 
Species: Nocardioides korecus
Strain Designation: Sco-A36
Strain history: DSM 22128 <-- S. D. Lee; Jeju Natl. Univ., South Korea; Sco-A36.
NCBI tax ID(s): 642766 (species)
version 8.1 (current version)
General
@ref: 16148
BacDive-ID: 11089
DSM-Number: 22128
keywords: 16S sequence, Bacteria, mesophilic
description: Nocardioides korecus Sco-A36 is a mesophilic bacterium that was isolated from volcanic ash .
NCBI tax id
- NCBI tax id: 642766
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16148 | <- S. D. Lee, Cheju National Univ., Rep. of Korea; Sco-A36 |
| 67770 | DSM 22128 <-- S. D. Lee; Jeju Natl. Univ., South Korea; Sco-A36. |
doi: 10.13145/bacdive11089.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides korecus
- full scientific name: Nocardioides korecus (Lee et al. 2011) Wang et al. 2023
synonyms
- @ref: 20215
- synonym: Marmoricola korecus
@ref: 16148
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Marmoricola
species: Marmoricola korecus
full scientific name: Marmoricola korecus Lee et al. 2011
strain designation: Sco-A36
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16148 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
| 16148 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16148 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 16148 | volcanic ash (Scoria) | Jeju | Republic of Korea | KOR | Asia |
| 67770 | Red layer of scoria (volcanic ash) in Jeju | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Dust |
| #Environmental | #Terrestrial | #Volcanic |
taxonmaps
- @ref: 69479
- File name: preview.99_26648.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_723;97_846;98_19984;99_26648&stattab=map
- Last taxonomy: Marmoricola korecus
- 16S sequence: FN386723
- Sequence Identity:
- Total samples: 858
- soil counts: 253
- aquatic counts: 61
- animal counts: 444
- plant counts: 100
Safety information
risk assessment
- @ref: 16148
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16148
- description: Marmoricola korecus partial 16S rRNA gene, type strain Sco-A36T
- accession: FN386723
- length: 1426
- database: ena
- NCBI tax ID: 642766
GC content
| @ref | GC-content | method |
|---|---|---|
| 16148 | 71.0 | high performance liquid chromatography (HPLC) |
| 67770 | 71 | high performance liquid chromatography (HPLC) |
External links
@ref: 16148
culture collection no.: DSM 22128, JCM 31978, KCTC 19596
straininfo link
- @ref: 80338
- straininfo: 403802
literature
- topic: Phylogeny
- Pubmed-ID: 20693360
- title: Marmoricola korecus sp. nov.
- authors: Lee SD, Lee DW, Ko YH
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.025460-0
- year: 2010
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Lipids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry, *Volcanic Eruptions
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16148 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22128) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22128 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 80338 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403802.1 | StrainInfo: A central database for resolving microbial strain identifiers |