Strain identifier
BacDive ID: 11085
Type strain: 
Species: Nocardioides sp.
Strain Designation: CNJ872
Strain history: <- P. Jensen, Scripps Inst. Oceanography, Univ. California, La Jolla, USA <- E. Gontang; CNJ872
NCBI tax ID(s): 1909296 (species)
version 8.1 (current version)
General
@ref: 6948
BacDive-ID: 11085
DSM-Number: 17396
keywords: 16S sequence, Bacteria, mesophilic
description: Nocardioides sp. CNJ872 is a mesophilic bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1909296
- Matching level: species
strain history
- @ref: 6948
- history: <- P. Jensen, Scripps Inst. Oceanography, Univ. California, La Jolla, USA <- E. Gontang; CNJ872
doi: 10.13145/bacdive11085.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides sp.
- full scientific name: Nocardioides Prauser 1976 (Approved Lists 1980)
synonyms
@ref synonym 20215 Marmoricola 20215 Pimelobacter
@ref: 6948
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Marmoricola
species: Marmoricola sp.
full scientific name: Marmoricola sp.
strain designation: CNJ872
type strain: no
Culture and growth conditions
culture medium
- @ref: 6948
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 6948
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 6948
- sample type: marine sediment
- geographic location: 7°30'N 134°30'E, intertidal zone to depths of 500 m
- country: Palau
- origin.country: PLW
- continent: Australia and Oceania
- latitude: 7.5
- longitude: 134.5
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_31921.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_723;97_846;98_986;99_31921&stattab=map
- Last taxonomy: Marmoricola
- 16S sequence: DQ448721
- Sequence Identity:
- Total samples: 1027
- soil counts: 279
- aquatic counts: 109
- animal counts: 599
- plant counts: 40
Sequence information
16S sequences
- @ref: 6948
- description: Marmoricola sp. CNJ872 PL04 16S ribosomal RNA gene, partial sequence
- accession: DQ448721
- length: 1484
- database: ena
- NCBI tax ID: 378575
External links
@ref: 6948
culture collection no.: DSM 17396
straininfo link
- @ref: 80334
- straininfo: 407096
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6948 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17396) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17396 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 80334 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407096.1 | StrainInfo: A central database for resolving microbial strain identifiers |