Strain identifier
BacDive ID: 11032
Type strain: 
Species: Rhodococcus gordoniae
Strain history: MTCC 1534 <-- V. Mishra.
NCBI tax ID(s): 223392 (species)
version 8.1 (current version)
General
@ref: 11881
BacDive-ID: 11032
DSM-Number: 44690
keywords: 16S sequence, mesophilic
description: Rhodococcus gordoniae DSM 44690 is a mesophilic prokaryote that was isolated from phenol contaminated soil.
NCBI tax id
- NCBI tax id: 223392
- Matching level: species
strain history
| @ref | history |
|---|---|
| 11881 | <- A. L. Jones, MTCC <- V. Mishra |
| 67770 | MTCC 1534 <-- V. Mishra. |
doi: 10.13145/bacdive11032.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus gordoniae
- full scientific name: Rhodococcus gordoniae Jones et al. 2004
@ref: 11881
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus gordoniae
full scientific name: Rhodococcus gordoniae Jones et al. 2004 emend. Nouioui et al. 2018
type strain: no
Culture and growth conditions
culture medium
- @ref: 11881
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 11881 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 11881 | phenol contaminated soil | India | IND | Asia | |
| 67770 | Phenol-contaminated soil | India | IND | Asia | near Chandigarh |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Contamination | |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_17.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_14;97_14;98_16;99_17&stattab=map
- Last taxonomy: Rhodococcus
- 16S sequence: AY233202
- Sequence Identity:
- Total samples: 11721
- soil counts: 4842
- aquatic counts: 2874
- animal counts: 3364
- plant counts: 641
Safety information
risk assessment
- @ref: 11881
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 11881
- description: Rhodococcus gordoniae strain MTCC 1534 16S ribosomal RNA gene, partial sequence
- accession: AY233202
- length: 1403
- database: ena
- NCBI tax ID: 223392
External links
@ref: 11881
culture collection no.: DSM 44690, MTCC 1534, JCM 12759
straininfo link
- @ref: 80285
- straininfo: 143330
literature
- topic: Phylogeny
- Pubmed-ID: 15023952
- title: Rhodococcus gordoniae sp. nov., an actinomycete isolated from clinical material and phenol-contaminated soil.
- authors: Jones AL, Brown JM, Mishra V, Perry JD, Steigerwalt AG, Goodfellow M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.02756-0
- year: 2004
- mesh: DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Humans, *Phenols, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Rhodococcus/classification/genetics/*isolation & purification, *Soil Microbiology, *Soil Pollutants, Species Specificity
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 11881 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44690) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44690 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 80285 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID143330.1 | StrainInfo: A central database for resolving microbial strain identifiers |