Strain identifier
BacDive ID: 11004
Type strain: 
Species: Rhodococcus opacus
Strain Designation: 691-19
Strain history: <- IMET; 691-19 (Rhodococcus sp.)
NCBI tax ID(s): 37919 (species)
version 8.1 (current version)
General
@ref: 11418
BacDive-ID: 11004
DSM-Number: 43943
keywords: 16S sequence, mesophilic
description: Rhodococcus opacus 691-19 is a mesophilic prokaryote that was isolated from soil, mixed forest.
NCBI tax id
- NCBI tax id: 37919
- Matching level: species
strain history
- @ref: 11418
- history: <- IMET; 691-19 (Rhodococcus sp.)
doi: 10.13145/bacdive11004.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus opacus
- full scientific name: Rhodococcus opacus Klatte et al. 1995
synonyms
@ref synonym 20215 Rhodococcus imtechensis 20215 Rhodococcus percolatus
@ref: 11418
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus opacus
full scientific name: Rhodococcus opacus Klatte et al. 1995
strain designation: 691-19
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11418 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 11418 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 11418
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 11418
- sample type: soil, mixed forest
- geographic location: Tihany
- country: Hungary
- origin.country: HUN
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
taxonmaps
- @ref: 69479
- File name: preview.99_4080.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_445;98_509;99_4080&stattab=map
- Last taxonomy: Rhodococcus
- 16S sequence: X80616
- Sequence Identity:
- Total samples: 2478
- soil counts: 1291
- aquatic counts: 312
- animal counts: 248
- plant counts: 627
Safety information
risk assessment
- @ref: 11418
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Rhodococcus sp. 16S rRNA gene, strain DSM43943
- accession: X80616
- length: 1470
- database: ena
- NCBI tax ID: 1831
External links
@ref: 11418
culture collection no.: DSM 43943, IMET 7363
straininfo link
- @ref: 80258
- straininfo: 50462
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11418 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43943) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43943 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 80258 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50462.1 | StrainInfo: A central database for resolving microbial strain identifiers |