Strain identifier
BacDive ID: 10999
Type strain: 
Species: Rhodococcus opacus
Strain history: CIP <- 1995, DSM <- D. Claus, DSM 441 <- R.E. Gordon, Nocardia neopaca
NCBI tax ID(s): 37919 (species)
version 8.1 (current version)
General
@ref: 10866
BacDive-ID: 10999
DSM-Number: 43206
keywords: 16S sequence, mesophilic
description: Rhodococcus opacus DSM 43206 is a mesophilic prokaryote that was isolated from soil.
NCBI tax id
- NCBI tax id: 37919
- Matching level: species
strain history
| @ref | history |
|---|---|
| 10866 | <- R.E. Gordon (Nocardia neoopaca) |
| 121423 | CIP <- 1995, DSM <- D. Claus, DSM 441 <- R.E. Gordon, Nocardia neopaca |
doi: 10.13145/bacdive10999.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus opacus
- full scientific name: Rhodococcus opacus Klatte et al. 1995
synonyms
@ref synonym 20215 Rhodococcus imtechensis 20215 Rhodococcus percolatus
@ref: 10866
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus opacus
full scientific name: Rhodococcus opacus Klatte et al. 1995
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 10866 | PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250) | yes | https://mediadive.dsmz.de/medium/250 | Name: PEPTONE MEAT EXTRACT GLYCEROL AGAR (DSMZ Medium 250) Composition: Agar 20.0 g/l Proteose peptone no. 3 5.0 g/l Meat extract 3.0 g/l Glycerol Distilled water |
| 39038 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
| 121423 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 10866 | positive | growth | 28 | mesophilic |
| 39038 | positive | growth | 30 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 10866 | soil |
| 121423 | Environment, Soil |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_628.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_445;98_509;99_628&stattab=map
- Last taxonomy: Rhodococcus
- 16S sequence: X80631
- Sequence Identity:
- Total samples: 806
- soil counts: 425
- aquatic counts: 116
- animal counts: 152
- plant counts: 113
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 10866 | 1 | Risk group (German classification) |
| 121423 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 20218
- description: Rhodococcus opacus 16S rRNA gene, strain DSM43206T
- accession: X80631
- length: 1473
- database: ena
- NCBI tax ID: 37919
External links
@ref: 10866
culture collection no.: DSM 43206, ATCC 21499, DSM 441, CIP 104550, NCIMB 11276
straininfo link
- @ref: 80253
- straininfo: 37551
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10866 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43206) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43206 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 39038 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16471 | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 80253 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID37551.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 121423 | Curators of the CIP | Collection of Institut Pasteur (CIP 104550) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104550 |