Strain identifier
BacDive ID: 10942
Type strain: 
Species: Rhodococcus ruber
Strain Designation: 219
Strain history: <- H. Diekmann, 219
NCBI tax ID(s): 1830 (species)
version 8.1 (current version)
General
@ref: 11588
BacDive-ID: 10942
DSM-Number: 44190
keywords: genome sequence, mesophilic
description: Rhodococcus ruber 219 is a mesophilic prokaryote that was isolated from effluents of a chemical factory.
NCBI tax id
- NCBI tax id: 1830
- Matching level: species
strain history
- @ref: 11588
- history: <- H. Diekmann, 219
doi: 10.13145/bacdive10942.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- genus: Rhodococcus
- species: Rhodococcus ruber
- full scientific name: Rhodococcus ruber (Kruse 1896) Goodfellow and Alderson 1977 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Streptothrix rubra
@ref: 11588
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Rhodococcus
species: Rhodococcus ruber
full scientific name: Rhodococcus ruber (Kruse 1896) Goodfellow and Alderson 1977 emend. Nouioui et al. 2018
strain designation: 219
type strain: no
Morphology
multimedia
- @ref: 11588
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44190.jpg
- caption: Medium 215 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11588 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 11588 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 11588
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 11588
- sample type: effluents of a chemical factory
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Plant (Factory) |
| #Engineered | #Waste | #Industrial wastewater |
Safety information
risk assessment
- @ref: 11588
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Rhodococcus ruber 219
- accession: GCA_021852985
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1830
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 98.872 | no |
| gram-positive | yes | 87.458 | no |
| anaerobic | no | 99.074 | no |
| aerobic | yes | 80.961 | no |
| halophile | no | 91.761 | no |
| spore-forming | no | 83.164 | no |
| motile | no | 93.997 | no |
| glucose-ferment | no | 91.575 | no |
| thermophile | no | 99.413 | no |
| glucose-util | yes | 88.963 | no |
External links
@ref: 11588
culture collection no.: DSM 44190
straininfo link
- @ref: 80196
- straininfo: 50518
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 11588 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44190) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44190 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 80196 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50518.1 | StrainInfo: A central database for resolving microbial strain identifiers |