Strain identifier

BacDive ID: 10910

Type strain: No

Species: Rhodococcus rhodochrous

Strain history: CIP <- 1994, JCM <- IAM, Mycobacterium rhodochrous <- ATCC <- E.O. Jordan, Bacillus mycoides roseus II <- Ruth Med. College

NCBI tax ID(s): 1829 (species)

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General

@ref: 10918

BacDive-ID: 10910

DSM-Number: 43274

keywords: 16S sequence, obligate aerobe, Gram-positive, rod-shaped, human pathogen

description: Rhodococcus rhodochrous DSM 43274 is an obligate aerobe, Gram-positive, rod-shaped human pathogen.

NCBI tax id

  • NCBI tax id: 1829
  • Matching level: species

strain history

@refhistory
10918<- K. Kieslich, Schering 212 (Mycobacterium rhodochrous) <- ATCC <- E.O. Jordan (Bacillus mycoides roseus II) <- Rush Medical College
67770IAM 12125 <-- ATCC 271 <-- E. O. Jordan <-- Ruth Med. Coll..
122224CIP <- 1994, JCM <- IAM, Mycobacterium rhodochrous <- ATCC <- E.O. Jordan, Bacillus mycoides roseus II <- Ruth Med. College

doi: 10.13145/bacdive10910.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus rhodochrous
  • full scientific name: Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Staphylococcus rhodochrous
    20215Rhodococcus roseus

@ref: 10918

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus rhodochrous

full scientific name: Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974 emend. Nouioui et al. 2018

type strain: no

Morphology

cell morphology

  • @ref: 122224
  • gram stain: positive
  • cell shape: rod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10918GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
35633MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122224CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperature
10918positivegrowth28
35633positivegrowth30
67770positivegrowth28
122224positivegrowth10-41
122224nogrowth45

Physiology and metabolism

oxygen tolerance

  • @ref: 122224
  • oxygen tolerance: obligate aerobe

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1222244853esculin-hydrolysis
12222417632nitrate+reduction
12222416301nitrite-reduction

antibiotic resistance

  • @ref: 122224
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 122224
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12222415688acetoin-
12222417234glucose-

enzymes

@refvalueactivityec
122224oxidase-
122224beta-galactosidase-3.2.1.23
122224alcohol dehydrogenase-1.1.1.1
122224gelatinase-
122224amylase+
122224DNase-
122224caseinase-3.4.21.50
122224catalase+1.11.1.6
122224lecithinase-
122224lysine decarboxylase-4.1.1.18
122224ornithine decarboxylase-4.1.1.17
122224phenylalanine ammonia-lyase+4.3.1.24
122224tryptophan deaminase-
122224urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122224--++-+---------++---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122224++-+---+------------------+----+-+--+-----------++------------+++--++------+---+++------+-+-----+++

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_17.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_14;97_14;98_16;99_17&stattab=map
  • Last taxonomy: Rhodococcus
  • 16S sequence: X80624
  • Sequence Identity:
  • Total samples: 11721
  • soil counts: 4842
  • aquatic counts: 2874
  • animal counts: 3364
  • plant counts: 641

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
10918yes, in single cases1Risk group (German classification)
1222241Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Rhodococcus rhodochrous 16S rRNA gene, strain DSM43274TX806241471nuccore1829
20218R.rhodochrous 16S rRNA gene (ATCC 271T)X819211319nuccore1829

GC content

  • @ref: 67770
  • GC-content: 67.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 10918

culture collection no.: DSM 43274, ATCC 271, JCM 2156, BCRC 13391, CIP 104186, IAM 12125, IMSNU 22207, KCTC 3490

straininfo link

  • @ref: 80164
  • straininfo: 34594

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
10918Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43274)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43274
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35633Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16066
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80164Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID34594.1StrainInfo: A central database for resolving microbial strain identifiers
122224Curators of the CIPCollection of Institut Pasteur (CIP 104186)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104186