Strain identifier

BacDive ID: 10897

Type strain: No

Species: Rhodococcus rhodochrous

Strain history: IAM 12123 <-- ATCC 4276 ("Nocardia opaca") <-- H. J. Conn ("Mycobacterium crystallophagum") <-- P. H. H. Gray.

NCBI tax ID(s): 1829 (species)

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General

@ref: 153

BacDive-ID: 10897

DSM-Number: 363

keywords: 16S sequence, human pathogen

description: Rhodococcus rhodochrous DSM 363 is a human pathogen.

NCBI tax id

  • NCBI tax id: 1829
  • Matching level: species

strain history

@refhistory
153<- ATCC (Nocardia opaca) <- H.J. Conn <- P.H.H. Gray
67770IAM 12123 <-- ATCC 4276 ("Nocardia opaca") <-- H. J. Conn ("Mycobacterium crystallophagum") <-- P. H. H. Gray.

doi: 10.13145/bacdive10897.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus rhodochrous
  • full scientific name: Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Staphylococcus rhodochrous
    20215Rhodococcus roseus

@ref: 153

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus rhodochrous

full scientific name: Rhodococcus rhodochrous (Zopf 1891) Tsukamura 1974 emend. Nouioui et al. 2018

type strain: no

Culture and growth conditions

culture medium

  • @ref: 153
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
153positivegrowth28
67770positivegrowth37

Physiology and metabolism

compound production

@refcompound
1533 keto1,4steroids
153restriction endonuclease RroI (SalI)

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_4519.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_14;97_14;98_16;99_4519&stattab=map
  • Last taxonomy: Rhodococcus
  • 16S sequence: KF208468
  • Sequence Identity:
  • Total samples: 3510
  • soil counts: 1489
  • aquatic counts: 660
  • animal counts: 1166
  • plant counts: 195

Safety information

risk assessment

  • @ref: 153
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Rhodococcus rhodochrous strain IEGM 66 16S ribosomal RNA gene, partial sequence
  • accession: KF208468
  • length: 1124
  • database: nuccore
  • NCBI tax ID: 1829

External links

@ref: 153

culture collection no.: DSM 363, ATCC 4276, DSM 43202, JCM 20420, IAM 12123, ICPB 4414, LMG 4067

straininfo link

  • @ref: 80152
  • straininfo: 4883

literature

  • topic: Genetics
  • Pubmed-ID: 7867954
  • title: Brevibacterium linens pBL33 and Rhodococcus rhodochrous pRC1 cryptic plasmids replicate in Rhodococcus sp. R312 (formerly Brevibacterium sp. R312).
  • authors: Bigey F, Grossiord B, Chan Kuo Chion CK, Arnaud A, Galzy P
  • journal: Gene
  • DOI: 10.1016/0378-1119(94)00886-w
  • year: 1995
  • mesh: Bacterial Proteins/genetics, Brevibacterium/*genetics, *DNA Replication, DNA, Bacterial/biosynthesis/*genetics, Drug Resistance, Microbial/genetics, Electroporation, Genetic Vectors/*genetics, Kanamycin Kinase, Phosphotransferases (Alcohol Group Acceptor)/genetics, Plasmids/*genetics/physiology, Rhodococcus/*genetics, Species Specificity, Transformation, Bacterial
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
153Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 363)https://www.dsmz.de/collection/catalogue/details/culture/DSM-363
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80152Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID4883.1StrainInfo: A central database for resolving microbial strain identifiers