Strain identifier

BacDive ID: 10858

Type strain: No

Species: Rhodococcus erythropolis

Strain Designation: MP50

Strain history: <- N. Layh; MP50

NCBI tax ID(s): 1833 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 3603

BacDive-ID: 10858

DSM-Number: 9675

keywords: 16S sequence, mesophilic, human pathogen

description: Rhodococcus erythropolis MP50 is a mesophilic human pathogen that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1833
  • Matching level: species

strain history

  • @ref: 3603
  • history: <- N. Layh; MP50

doi: 10.13145/bacdive10858.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • genus: Rhodococcus
  • species: Rhodococcus erythropolis
  • full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Mycobacterium erythropolis
    20215Rhodococcus qingshengii
    20215Rhodococcus baikonurensis
    20215Rhodococcus jialingiae
    20215Rhodococcus enclensis
    20215Rhodococcus degradans

@ref: 3603

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Rhodococcus

species: Rhodococcus erythropolis

full scientific name: Rhodococcus erythropolis (Gray and Thornton 1928) Goodfellow and Alderson 1979 emend. Nouioui et al. 2018

strain designation: MP50

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3603CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
3603MINERAL MEDIUM WITH BENZYLCYANIDE AS NITROGEN SOURCE (DSMZ Medium 465d)yeshttps://mediadive.dsmz.de/medium/465dName: MINERAL MEDIUM WITH BENZYLCYANIDE AS NITROGEN SOURCE (DSMZ Medium 465d; with strain-specific modifications) Composition: Na2HPO4 x 2 H2O 3.5 g/l Sodium succinate 1.6 g/l KH2PO4 1.0 g/l Benzylcyanide 0.12 g/l MgCl2 x 6 H2O 0.1 g/l Ca(NO3)2 x 4 H2O 0.05 g/l EDTA 0.0005 g/l FeSO4 x 7 H2O 0.0002 g/l H3BO3 3e-05 g/l CoCl2 x 6 H2O 2e-05 g/l ZnSO4 x 7 H2O 1e-05 g/l MnCl2 x 4 H2O 3e-06 g/l Na2MoO4 x 2 H2O 3e-06 g/l NiCl2 x 6 H2O 2e-06 g/l CuCl2 x 2 H2O 1e-06 g/l Distilled water

culture temp

  • @ref: 3603
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

compound production

@refcompound
3603nitrile hydratase
3603S naproxen
3603arylamide amidase

Isolation, sampling and environmental information

isolation

  • @ref: 3603
  • sample type: soil
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_1118.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_181;97_585;98_672;99_1118&stattab=map
  • Last taxonomy: Nocardiaceae
  • 16S sequence: AB429541
  • Sequence Identity:
  • Total samples: 28787
  • soil counts: 7777
  • aquatic counts: 6494
  • animal counts: 11681
  • plant counts: 2835

Safety information

risk assessment

  • @ref: 3603
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Rhodococcus erythropolis gene for 16S rRNA, partial sequence, strain: DSM 9675
  • accession: AB429541
  • length: 1440
  • database: ena
  • NCBI tax ID: 1833

External links

@ref: 3603

culture collection no.: DSM 9675

straininfo link

  • @ref: 80114
  • straininfo: 48666

literature

  • topic: Enzymology
  • Pubmed-ID: 15162394
  • title: Searching for nitrile hydratase using the Consensus-Degenerate Hybrid Oligonucleotide Primers strategy.
  • authors: Lourenco PM, Almeida T, Mendonca D, Simoes F, Novo C
  • journal: J Basic Microbiol
  • DOI: 10.1002/jobm.200310340
  • year: 2004
  • mesh: Agrobacterium tumefaciens/enzymology/genetics, Comamonadaceae/enzymology/genetics, Consensus Sequence, *DNA Primers, DNA, Bacterial/chemistry/isolation & purification, Genes, Bacterial, Hydro-Lyases/*genetics/*isolation & purification, Molecular Sequence Data, Phylogeny, *Polymerase Chain Reaction, Protein Subunits, Rhodococcus/enzymology/genetics/growth & development, Sequence Alignment, Sequence Analysis, DNA, Sequence Homology
  • topic2: Phylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3603Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9675)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9675
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
80114Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48666.1StrainInfo: A central database for resolving microbial strain identifiers