Strain identifier
BacDive ID: 10754
Type strain: 
Species: Nocardia africana
Strain Designation: SD 880
Strain history: <- M. Goodfellow; SD 880
NCBI tax ID(s): 134964 (species)
version 8.1 (current version)
General
@ref: 11824
BacDive-ID: 10754
DSM-Number: 44500
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Nocardia africana SD 880 is a mesophilic human pathogen that was isolated from sputa from patient.
NCBI tax id
- NCBI tax id: 134964
- Matching level: species
strain history
- @ref: 11824
- history: <- M. Goodfellow; SD 880
doi: 10.13145/bacdive10754.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia africana
- full scientific name: Nocardia africana Hamid et al. 2001
@ref: 11824
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Nocardia
species: Nocardia africana
full scientific name: Nocardia africana Hamid et al. 2001 emend. Nouioui et al. 2018
strain designation: SD 880
type strain: no
Morphology
multimedia
- @ref: 11824
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44500.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 11824 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://mediadive.dsmz.de/medium/535 | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water |
| 11824 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
- @ref: 11824
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 11824
- sample type: sputa from patient
- country: Sudan
- origin.country: SDN
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Host Body Product | #Fluids | #Sputum |
taxonmaps
- @ref: 69479
- File name: preview.99_1641.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_243;97_1088;98_1298;99_1641&stattab=map
- Last taxonomy: Nocardia
- 16S sequence: AF302232
- Sequence Identity:
- Total samples: 4172
- soil counts: 2461
- aquatic counts: 606
- animal counts: 719
- plant counts: 386
Safety information
risk assessment
- @ref: 11824
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Nocardia africana strain DSM 44500 16S ribosomal RNA gene, partial sequence | JN041604 | 462 | ena | 134964 |
| 11824 | Nocardia africana SD880 16S ribosomal RNA gene, partial sequence | AF302232 | 1483 | ena | 134964 |
External links
@ref: 11824
culture collection no.: DSM 44500
straininfo link
- @ref: 80022
- straininfo: 50659
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 11824 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44500) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-44500 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 80022 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50659.1 | StrainInfo: A central database for resolving microbial strain identifiers |