Archive BacDiveID:10.13145/bacdive10680.20230509.8.1

Strain identifier

BacDive ID: 10680

Type strain:

Species: Nocardia otitidiscaviarum

Strain Designation: S639

Strain history: <- H. Mauch, Hospital Zehlendorf-Heckeshorn; S639

NCBI tax ID(s): 1823 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 11761

BacDive-ID: 10680

DSM-Number: 44565

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Nocardia otitidiscaviarum S639 is a mesophilic human pathogen that was isolated from sputum of a patient with captic fibrosis.

NCBI tax id

NCBI tax id: 1823
Matching level: species

strain history

@ref: 11761
history: <- H. Mauch, Hospital Zehlendorf-Heckeshorn; S639

doi: 10.13145/bacdive10680.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Mycobacteriales
family: Nocardiaceae
genus: Nocardia
species: Nocardia otitidiscaviarum
full scientific name: Nocardia otitidiscaviarum corrig. Snijders 1924 (Approved Lists 1980)

@ref: 11761

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Nocardia

species: Nocardia otitidiscaviarum

full scientific name: Nocardia otitidiscaviarum Snijders 1924 emend. Nouioui et al. 2018

strain designation: S639

type strain: no

Culture and growth conditions

culture medium

@ref: 11761
name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
growth: yes
link: https://mediadive.dsmz.de/medium/65
composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@ref: 11761
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 11761
sample type: sputum of a patient with captic fibrosis
geographic location: Berlin
country: Germany
origin.country: DEU
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease
#Infection	#Patient
#Host Body Product	#Fluids	#Sputum

Safety information

risk assessment

@ref: 11761
pathogenicity human: yes
pathogenicity animal: yes
biosafety level: 2
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Nocardia otitidiscaviarum strain DSM 44565 16S-23S ribosomal RNA intergenic spacer, complete sequence	AF536469	319	ena	1823
20218	Nocardia otitidiscaviarum strain DSM 44565 16S ribosomal RNA gene, partial sequence	JN041513	462	ena	1823

External links

@ref: 11761

culture collection no.: DSM 44565

straininfo link

@ref: 79950
straininfo: 113678

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
11761	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44565)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-44565
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
79950	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID113678.1	StrainInfo: A central database for resolving microbial strain identifiers