Strain identifier
BacDive ID: 10663
Type strain: 
Species: Nocardia farcinica
Strain Designation: S643, 51.5
Strain history: <- CCM (Nocardia asteroides) <- BUCSAV, 51.5 <- ATCC <- R.E. Gordon (<- O. Felsenfeld)
NCBI tax ID(s): 37329 (species)
General
@ref: 10727
BacDive-ID: 10663
DSM-Number: 43063
keywords: 16S sequence, Bacteria, mesophilic, human pathogen
description: Nocardia farcinica S643 is a mesophilic human pathogen that was isolated from madura foot.
NCBI tax id
- NCBI tax id: 37329
- Matching level: species
strain history
- @ref: 10727
- history: <- CCM (Nocardia asteroides) <- BUCSAV, 51.5 <- ATCC <- R.E. Gordon (<- O. Felsenfeld)
doi: 10.13145/bacdive10663.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Nocardiaceae
- genus: Nocardia
- species: Nocardia farcinica
- full scientific name: Nocardia farcinica Trevisan 1889 (Approved Lists 1980)
@ref: 10727
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardiaceae
genus: Nocardia
species: Nocardia farcinica
full scientific name: Nocardia farcinica Trevisan 1889 emend. Nouioui et al. 2018
strain designation: S643, 51.5
type strain: no
Culture and growth conditions
culture medium
- @ref: 10727
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 10727
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 10727
- sample type: madura foot
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body-Site | #Limb | #Foot |
| #Infection | #Disease | |
| #Infection | #Patient | |
| #Host | #Fungi |
Safety information
risk assessment
- @ref: 10727
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Nocardia farcinica strain DSM 43063 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536433 | 332 | ena | 37329 |
| 20218 | Nocardia farcinica strain DSM 43063 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence | AF536434 | 305 | ena | 37329 |
External links
@ref: 10727
culture collection no.: DSM 43063, ATCC 9504, CCM 3254, IMET 7452
straininfo link
- @ref: 79933
- straininfo: 35070
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 10727 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43063) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-43063 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 79933 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID35070.1 | StrainInfo: A central database for resolving microbial strain identifiers |