Strain identifier
BacDive ID: 10595
Type strain: 
Species: Gordonia sp.
Strain history: Y. Mikami IFM 10703.
NCBI tax ID(s): 398554 (species)
version 8.1 (current version)
General
@ref: 12266
BacDive-ID: 10595
DSM-Number: 45039
keywords: 16S sequence, Bacteria, mesophilic
description: Gordonia sp. DSM 45039 is a mesophilic bacterium that was isolated from human.
NCBI tax id
- NCBI tax id: 398554
- Matching level: species
strain history
| @ref | history |
|---|---|
| 12266 | <- Y. Mikami; IFM 10703 <- K. Yazawa |
| 67770 | Y. Mikami IFM 10703. |
doi: 10.13145/bacdive10595.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Gordoniaceae
- genus: Gordonia
- species: Gordonia sp.
- full scientific name: Gordonia corrig. (ex Tsukamura 1971) Stackebrandt et al. 1989
synonyms
- @ref: 20215
- synonym: Gordona
@ref: 12266
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Gordoniaceae
genus: Gordonia
species: Gordonia sp.
full scientific name: Gordonia sp.
type strain: no
Culture and growth conditions
culture medium
- @ref: 12266
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 12266 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 12266 | human | Japan | JPN | Asia |
| 67770 | Catheter of a patient | Japan | JPN | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Human
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Gordonia sp. IFM 10703 gene for 16S rRNA, partial sequence | AB476397 | 1468 | ena | 398554 |
| 12266 | Gordonia sp. IFM 10703 gene for 16S rRNA, partial sequence | AB268325 | 1361 | ena | 398554 |
External links
@ref: 12266
culture collection no.: DSM 45039, IFM 10703, JCM 14157
straininfo link
- @ref: 79870
- straininfo: 297504
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 12266 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45039) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45039 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 79870 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297504.1 | StrainInfo: A central database for resolving microbial strain identifiers |