Strain identifier

BacDive ID: 10562

Type strain: No

Species: Gordonia rubripertincta

Strain Designation: 279, Breed 279, Schering 259

Strain history: CIP <- 1995, DSMZ <- K. Kieslich: strain Schering 259 <- ATCC, Mycobacterium rubropertinctum <- R.S. Breed: strain 279 <- H.J. Conn <- H.L. Jensen

NCBI tax ID(s): 36822 (species)

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General

@ref: 10933

BacDive-ID: 10562

DSM-Number: 43291

keywords: Bacteria, obligate aerobe, mesophilic, Gram-positive, rod-shaped

description: Gordonia rubripertincta 279 is an obligate aerobe, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 36822
  • Matching level: species

strain history

@refhistory
10933<- K. Kieslich, Schering 259 <- ATCC (Mycobacterium rubropertinctum) <- R.S. Breed, 279 <- H. Conn <- H.L. Jensen
122294CIP <- 1995, DSMZ <- K. Kieslich: strain Schering 259 <- ATCC, Mycobacterium rubropertinctum <- R.S. Breed: strain 279 <- H.J. Conn <- H.L. Jensen

doi: 10.13145/bacdive10562.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Gordoniaceae
  • genus: Gordonia
  • species: Gordonia rubripertincta
  • full scientific name: Gordonia rubripertincta corrig. (Hefferan 1904) Stackebrandt et al. 1989

  • synonyms

    @refsynonym
    20215Bacillus rubropertinctus
    20215Rhodococcus corallinus
    20215Serratia corallina
    20215Rhodococcus rubropertinctus
    20215Gordona rubropertinctus
    20215Gordonia rubropertinctus
    20215Gordona rubripertincta
    20215Gordona rubra

@ref: 10933

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Gordoniaceae

genus: Gordonia

species: Gordonia rubripertincta

full scientific name: Gordonia rubripertincta (Hefferan 1904) Stackebrandt et al. 1989 emend. Nouioui et al. 2018

strain designation: 279, Breed 279, Schering 259

type strain: no

Morphology

cell morphology

  • @ref: 122294
  • gram stain: positive
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
10933GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
39069MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122294CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
10933positivegrowth37mesophilic
39069positivegrowth30mesophilic
122294positivegrowth10-41
122294nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 122294
  • oxygen tolerance: obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12229416947citrate+carbon source
1222944853esculin-hydrolysis
12229417632nitrate-reduction
12229416301nitrite-reduction
12229417632nitrate-respiration

metabolite production

  • @ref: 122294
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12229415688acetoin-
12229417234glucose-

enzymes

@refvalueactivityec
122294oxidase-
122294beta-galactosidase-3.2.1.23
122294alcohol dehydrogenase-1.1.1.1
122294gelatinase-
122294amylase-
122294DNase-
122294caseinase-3.4.21.50
122294catalase+1.11.1.6
122294tween esterase-
122294gamma-glutamyltransferase-2.3.2.2
122294lecithinase-
122294lipase-
122294lysine decarboxylase-4.1.1.18
122294ornithine decarboxylase-4.1.1.17
122294protease-
122294tryptophan deaminase-
122294urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase+3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122294-+++++-+--++---++---

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122294++-+---+------------------+------++++------------+---+------+------+-----------++-------+----+--+--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
10933soil
122294Environment, SoilAustraliaAUSAustralia and Oceania

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
109331Risk group (German classification)
1222941Risk group (French classification)

External links

@ref: 10933

culture collection no.: DSM 43291, ATCC 14343, CIP 104630, IMET 46037, IMET 7424, Tsukamura 60016

straininfo link

  • @ref: 79838
  • straininfo: 45555

Reference

@idauthorscataloguedoi/urltitle
10933Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 43291)https://www.dsmz.de/collection/catalogue/details/culture/DSM-43291
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
39069Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16560
68382Automatically annotated from API zym
79838Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45555.1StrainInfo: A central database for resolving microbial strain identifiers
122294Curators of the CIPCollection of Institut Pasteur (CIP 104630)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104630