Strain identifier
BacDive ID: 10527
Type strain: 
Species: Pseudogulbenkiania sp.
Strain Designation: 2002
Strain history: <- K. A. Weber; 2002
NCBI tax ID(s): 1913980 (species)
version 8.1 (current version)
General
@ref: 7709
BacDive-ID: 10527
DSM-Number: 18807
keywords: 16S sequence, Bacteria, mesophilic
description: Pseudogulbenkiania sp. 2002 is a mesophilic bacterium that was isolated from freshwater lake sediment.
NCBI tax id
- NCBI tax id: 1913980
- Matching level: species
strain history
- @ref: 7709
- history: <- K. A. Weber; 2002
doi: 10.13145/bacdive10527.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Chromobacteriaceae
- genus: Pseudogulbenkiania
- species: Pseudogulbenkiania sp.
- full scientific name: Pseudogulbenkiania Lin et al. 2008
@ref: 7709
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Chromobacteriaceae
genus: Pseudogulbenkiania
species: Pseudogulbenkiania sp.
full scientific name: Pseudogulbenkiania sp.
strain designation: 2002
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 7709 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
| 7709 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf | |
| 7709 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf | |
| 7709 | R2A MEDIUM (DSMZ Medium 830) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830.pdf |
culture temp
- @ref: 7709
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 7709
- sample type: freshwater lake sediment
- geographic location: Illinois, Carbondale
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_2390.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15355;96_1288;97_1529;98_1862;99_2390&stattab=map
- Last taxonomy: Pseudogulbenkiania
- 16S sequence: AY609199
- Sequence Identity:
- Total samples: 12470
- soil counts: 5496
- aquatic counts: 3842
- animal counts: 1764
- plant counts: 1368
Sequence information
16S sequences
- @ref: 7709
- description: Chromobacterium sp. 2002 16S ribosomal RNA gene, complete sequence
- accession: AY609199
- length: 1521
- database: ena
- NCBI tax ID: 279714
External links
@ref: 7709
culture collection no.: DSM 18807
straininfo link
- @ref: 79803
- straininfo: 396989
literature
- topic: Phylogeny
- Pubmed-ID: 19333599
- title: Physiological and taxonomic description of the novel autotrophic, metal oxidizing bacterium, Pseudogulbenkiania sp. strain 2002.
- authors: Weber KA, Hedrick DB, Peacock AD, Thrash JC, White DC, Achenbach LA, Coates JD
- journal: Appl Microbiol Biotechnol
- DOI: 10.1007/s00253-009-1934-7
- year: 2009
- mesh: Autotrophic Processes, Betaproteobacteria/*classification/genetics/isolation & purification/*metabolism, DNA, Bacterial/genetics, DNA, Ribosomal, Fatty Acids/metabolism, Fresh Water/*microbiology, Geologic Sediments/microbiology, Metals/*metabolism, Molecular Sequence Data, Nitrates/metabolism, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7709 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18807) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18807 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 79803 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID396989.1 | StrainInfo: A central database for resolving microbial strain identifiers |