Strain identifier
BacDive ID: 10511
Type strain: 
Species: Aquitalea magnusonii
Strain Designation: TRO-001DR8
Strain history: <- LMG <- E. W. Triplett, Univ. Florida, Dept. Microbiol. and Cell Science, Inst. Food and Agricultural Scs., USA
NCBI tax ID(s): 332411 (species)
version 8.1 (current version)
General
@ref: 17916
BacDive-ID: 10511
DSM-Number: 25134
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Aquitalea magnusonii TRO-001DR8 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from surface water of humic lake.
NCBI tax id
- NCBI tax id: 332411
- Matching level: species
strain history
- @ref: 17916
- history: <- LMG <- E. W. Triplett, Univ. Florida, Dept. Microbiol. and Cell Science, Inst. Food and Agricultural Scs., USA
doi: 10.13145/bacdive10511.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Chromobacteriaceae
- genus: Aquitalea
- species: Aquitalea magnusonii
- full scientific name: Aquitalea magnusonii Lau et al. 2006
@ref: 17916
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Chromobacteriaceae
genus: Aquitalea
species: Aquitalea magnusonii
full scientific name: Aquitalea magnusonii Lau et al. 2006
strain designation: TRO-001DR8
type strain: yes
Morphology
cell morphology
- @ref: 31706
- gram stain: negative
- cell length: 01-07 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 31706
- production: yes
multimedia
- @ref: 17916
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25134.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 17916
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17916 | positive | growth | 28 | mesophilic |
| 31706 | positive | growth | 04-45 | |
| 31706 | positive | optimum | 35 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 31706 | positive | growth | 6 |
| 31706 | positive | optimum | 6 |
Physiology and metabolism
oxygen tolerance
- @ref: 31706
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 31706
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 31706 | NaCl | positive | growth | 0-1.5 % |
| 31706 | NaCl | positive | optimum | 0-1.5 % |
observation
- @ref: 31706
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31706 | 30089 | acetate | + | carbon source |
| 31706 | 22653 | asparagine | + | carbon source |
| 31706 | 35391 | aspartate | + | carbon source |
| 31706 | 16947 | citrate | + | carbon source |
| 31706 | 29987 | glutamate | + | carbon source |
| 31706 | 28087 | glycogen | + | carbon source |
| 31706 | 24996 | lactate | + | carbon source |
| 31706 | 26271 | proline | + | carbon source |
| 31706 | 17272 | propionate | + | carbon source |
| 31706 | 51850 | methyl pyruvate | + | carbon source |
| 31706 | 17822 | serine | + | carbon source |
| 31706 | 30031 | succinate | + | carbon source |
| 31706 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 31706
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 31706
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31706 | catalase | + | 1.11.1.6 |
| 31706 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 17916
- sample type: surface water of humic lake
- geographic location: Wisconsin, Trout Bog Lake
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Aquatic | #Surface water |
| #Condition | #Acidic |
taxonmaps
- @ref: 69479
- File name: preview.99_7892.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15355;96_1468;97_1750;98_2141;99_7892&stattab=map
- Last taxonomy: Aquitalea
- 16S sequence: AB681930
- Sequence Identity:
- Total samples: 1850
- soil counts: 92
- aquatic counts: 771
- animal counts: 353
- plant counts: 634
Safety information
risk assessment
- @ref: 17916
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Aquitalea magnusonii gene for 16S rRNA, partial sequence, strain: NBRC 103050 | AB681930 | 1461 | ena | 332411 |
| 17916 | Aquitalea magnusonii strain TRO-001DR8 16S ribosomal RNA gene, partial sequence | DQ018117 | 1502 | ena | 332411 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aquitalea magnusonii DSM 25134 | GCA_003202035 | scaffold | ncbi | 332411 |
| 66792 | Aquitalea magnusonii CCM 7607 | GCA_001515285 | contig | ncbi | 332411 |
| 66792 | Aquitalea magnusonii strain CCM 7607 | 332411.13 | wgs | patric | 332411 |
| 66792 | Aquitalea magnusonii strain DSM 25134 | 332411.11 | wgs | patric | 332411 |
| 66792 | Aquitalea magnusonii CCM 7607 | 2703718752 | draft | img | 332411 |
| 66792 | Aquitalea magnusonii DSM 25134 | 2770939555 | draft | img | 332411 |
GC content
- @ref: 31706
- GC-content: 59
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 89.997 | no |
| gram-positive | no | 98.401 | no |
| anaerobic | no | 97.407 | yes |
| halophile | no | 95.494 | no |
| spore-forming | no | 94.816 | yes |
| thermophile | no | 99.359 | yes |
| glucose-util | yes | 93.465 | no |
| aerobic | yes | 65.749 | no |
| motile | yes | 93.578 | yes |
| glucose-ferment | no | 78.741 | no |
External links
@ref: 17916
culture collection no.: DSM 25134, ATCC BAA 1216, CCM 7607, LMG 23054, NBRC 103050
straininfo link
- @ref: 79788
- straininfo: 138598
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 16585708 | Aquitalea magnusonii gen. nov., sp. nov., a novel Gram-negative bacterium isolated from a humic lake. | Lau HT, Faryna J, Triplett EW | Int J Syst Evol Microbiol | 10.1099/ijs.0.64089-0 | 2006 | Fresh Water/*microbiology, Gram-Negative Bacteria/*classification/genetics/*isolation & purification/ultrastructure, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics | Genetics |
| Phylogeny | 18175708 | Paludibacterium yongneupense gen. nov., sp. nov., isolated from a wetland, Yongneup, in Korea. | Kwon SW, Kim BY, Kim WG, Yoo KH, Yoo SH, Son JA, Weon HY | Int J Syst Evol Microbiol | 10.1099/ijs.0.64831-0 | 2008 | Bacterial Typing Techniques, Base Composition, Betaproteobacteria/chemistry/*classification/genetics/*isolation & purification, DNA, Bacterial/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, *Wetlands | Genetics |
| Phylogeny | 18842860 | Pseudogulbenkiania subflava gen. nov., sp. nov., isolated from a cold spring. | Lin MC, Chou JH, Arun AB, Young CC, Chen WM | Int J Syst Evol Microbiol | 10.1099/ijs.0.65755-0 | 2008 | Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Genes, Bacterial, Genes, rRNA, Genotype, Molecular Sequence Data, Neisseriaceae/genetics, Phenotype, Phylogeny, Quinones/chemistry, RNA, Ribosomal, 16S/chemistry/*classification/*genetics/isolation & purification, Sequence Analysis, DNA, Taiwan, *Water Microbiology | Genetics |
| Phylogeny | 19406790 | Aquitalea denitrificans sp. nov., isolated from a Korean wetland. | Lee CM, Weon HY, Kim YJ, Son JA, Yoon SH, Koo BS, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijs.0.002840-0 | 2009 | Bacterial Typing Techniques, DNA, Bacterial/analysis/genetics, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Neisseriaceae/*classification/genetics/isolation & purification/physiology, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, *Wetlands | Genetics |
| Phylogeny | 26637813 | Aquitalea pelogenes sp. nov., isolated from mineral peloid. | Sedlacek I, Kwon SW, Svec P, Maslan ova I, Kyrova K, Holochova P, Cernohlavkova J, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000819 | 2015 | ||
| Phylogeny | 32821034 | Aquitalea aquatilis sp. nov., isolated from Jungwon waterfall. | Ngo HTT, Kim H, Trinh H, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004351 | 2020 | Bacterial Typing Techniques, Base Composition, Betaproteobacteria/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Fresh Water, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/chemistry, *Water Microbiology | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 17916 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25134) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25134 | ||||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 31706 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 27983 | ||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | ||||
| 79788 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID138598.1 | StrainInfo: A central database for resolving microbial strain identifiers |