Strain identifier
BacDive ID: 10468
Type strain: 
Species: Neisseria sp.
Strain history: <- NCTC <- U. Berger
NCBI tax ID(s): 192066 (species)
version 8.1 (current version)
General
@ref: 1807
BacDive-ID: 10468
DSM-Number: 4631
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Neisseria sp. DSM 4631 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from human pharyngeal mucosa.
NCBI tax id
- NCBI tax id: 192066
- Matching level: species
strain history
- @ref: 1807
- history: <- NCTC <- U. Berger
doi: 10.13145/bacdive10468.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Neisseriaceae
- genus: Neisseria
- species: Neisseria sp.
- full scientific name: Neisseria Trevisan 1885 (Approved Lists 1980)
@ref: 1807
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Neisseriaceae
genus: Neisseria
species: Neisseria sp.
full scientific name: Neisseria sp.
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.994
colony morphology
- @ref: 1807
- type of hemolysis: gamma
- incubation period: 1-2 days
Culture and growth conditions
culture medium
- @ref: 1807
- name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
- growth: yes
- link: https://mediadive.dsmz.de/medium/693
- composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
culture temp
- @ref: 1807
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1807
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 100 |
compound production
- @ref: 1807
- compound: restriction endonuclease NmuEI (DpnI)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68377 | 17634 | D-glucose | + | builds acid from |
| 68377 | 15824 | D-fructose | + | builds acid from |
| 68377 | 17306 | maltose | + | builds acid from |
| 68377 | 16199 | urea | - | hydrolysis |
| 68377 | 27897 | tryptophan | - | energy source |
metabolite production
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68377
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 1807 | catalase | + | 1.11.1.6 |
| 1807 | cytochrome-c oxidase | + | 1.9.3.1 |
| 68377 | tryptophan deaminase | - | 4.1.99.1 |
| 68377 | alkaline phosphatase | - | 3.1.3.1 |
| 68377 | lipase | - | |
| 68377 | urease | - | 3.5.1.5 |
API NH
| @ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1807 | + | + | + | + | - | - | - | - | - | + | - | - | - |
| 1807 | + | + | + | + | +/- | - | - | - | - | + | + | - | - |
| 1807 | - | + | + | + | + | - | - | - | - | - | + | - | - |
| 1807 | - | + | + | + | + | +/- | - | - | - | - | + | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 1807
- sample type: human pharyngeal mucosa
- geographic location: Heidelberg
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Throat |
Sequence information
16S sequences
- @ref: 20218
- description: Neisseria mucosa 16S rRNA gene, partial
- accession: AJ247255
- length: 457
- database: ena
- NCBI tax ID: 488
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Neisseria mucosa NCTC 10774 | GCA_900454435 | contig | ncbi | 488 |
| 66792 | Neisseria mucosa ATCC 25996 | GCA_000173875 | contig | ncbi | 546266 |
| 66792 | Neisseria mucosa ATCC 25996 | 546266.6 | wgs | patric | 546266 |
| 66792 | Neisseria mucosa strain NCTC 10774 | 488.33 | wgs | patric | 488 |
| 66792 | Neisseria mucosa M26, ATCC 25996 | 2562617186 | draft | img | 546266 |
| 66792 | Neisseria mucosa NCTC 10774 | 2811995231 | draft | img | 488 |
GC content
| @ref | GC-content |
|---|---|
| 1807 | 51.6 |
| 1807 | 50.5-52.0 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.196 | no |
| anaerobic | no | 98.434 | yes |
| halophile | no | 77.025 | no |
| spore-forming | no | 96.994 | no |
| glucose-util | yes | 69.477 | no |
| thermophile | no | 99.29 | yes |
| aerobic | no | 94.421 | yes |
| motile | no | 87.845 | no |
| flagellated | no | 92.939 | no |
| glucose-ferment | no | 86.647 | no |
External links
@ref: 1807
culture collection no.: DSM 4631, ATCC 25996, NCTC 10774
straininfo link
- @ref: 79745
- straininfo: 344003
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1807 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4631) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4631 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 68377 | Automatically annotated from API NH | |||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 79745 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID344003.1 | StrainInfo: A central database for resolving microbial strain identifiers |