Strain identifier
BacDive ID: 104
Type strain: 
Species: Succiniclasticum sp.
Strain Designation: B14
Strain history: <- N. O. van Gylswyk, Swedish Univ. Agric. Sci., Uppsala, Sweden; B14 (Succiniclasticum ruminis) <- N. O. van Gylswyk {1994}
NCBI tax ID(s): 2775030 (species)
version 9.1 (current version)
General
@ref: 4159
BacDive-ID: 104
DSM-Number: 11005
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative
description: Succiniclasticum sp. B14 is an anaerobe, Gram-negative bacterium that was isolated from cow rumen.
NCBI tax id
- NCBI tax id: 2775030
- Matching level: species
strain history
- @ref: 4159
- history: <- N. O. van Gylswyk, Swedish Univ. Agric. Sci., Uppsala, Sweden; B14 (Succiniclasticum ruminis) <- N. O. van Gylswyk {1994}
doi: 10.13145/bacdive104.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Acidaminococcales
- family: Acidaminococcaceae
- genus: Succiniclasticum
- species: Succiniclasticum sp.
- full scientific name: Succiniclasticum van Gylswyk 1995
@ref: 4159
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Acidaminococcaceae
genus: Succiniclasticum
species: Succiniclasticum sp.
full scientific name: Succiniclasticum sp.
strain designation: B14
type strain: no
Culture and growth conditions
culture medium
- @ref: 4159
- name: SUCCINICLASTICUM MEDIUM (DSMZ Medium 666)
- growth: yes
- link: https://mediadive.dsmz.de/medium/666
- composition: Name: SUCCINICLASTICUM MEDIUM (DSMZ Medium 666) Composition: NaHCO3 6.4 g/l Yeast extract 5.0 g/l Disodium succinate 5.0 g/l NaCl 0.45 g/l (NH4)2SO4 0.45 g/l L-Cysteine HCl x H2O 0.3 g/l Na2S x 9 H2O 0.3 g/l KH2PO4 0.23 g/l K2HPO4 0.23 g/l MgSO4 x 7 H2O 0.09 g/l CaCl2 x 2 H2O 0.06 g/l Indigocarmine 0.005 g/l Rumen fluid Distilled water
culture temp
- @ref: 4159
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 4159
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4159
- sample type: cow rumen
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Organ | #Rumen |
Safety information
risk assessment
- @ref: 4159
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 4159
- description: Succiniclasticum ruminis strain DSM 11005 16S ribosomal RNA gene, partial sequence
- accession: MW980060
- length: 1542
- database: nuccore
- NCBI tax ID: 40841
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Succiniclasticum ruminis DSM 11005 | GCA_900101645 | scaffold | ncbi | 40841 |
| 66792 | Succiniclasticum ruminis strain DSM 11005 | 40841.28 | wgs | patric | 40841 |
| 66792 | Succiniclasticum ruminis DSM11005 | 2623620478 | draft | img | 40841 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 85.959 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 89.647 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 87.962 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 75.224 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 86.906 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 83.279 | no |
External links
@ref: 4159
culture collection no.: DSM 11005
straininfo link
- @ref: 69787
- straininfo: 48999
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4159 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11005) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11005 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69787 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48999.1 | StrainInfo: A central database for resolving microbial strain identifiers |