Name: Mycobacterium pseudokansasii MK142
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166498

Type strain:

Species: Mycobacterium pseudokansasii

Strain Designation: MK142

Culture col. no.: CCUG 72128, DSM 107152

Strain history: <- F. Tagini, Lausanne University Hospital; MK142

NCBI tax ID(s): 2341080 (species)

SI-ID 398562

DSM 107152

Section

Mycobacterium pseudokansasii MK142 is a mesophilic bacterium that was isolated from blood culture of a patient with a disseminated mycobacterial infection.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium pseudokansasii**
	Full Scientific Name (LPSN)	Mycobacterium pseudokansasii Tagini et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67931]	Colony color	beige
[Ref.: #67931]	Incubation period	14 days
[Ref.: #67931]	Cultivation medium used	7H10

[Ref.: #67931]	Pigment production	yes
[Ref.: #67931]	Pigment name	Photochrome

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69049]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #69049]

Culture medium growth

[Ref.: #69049]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #69049]			growth	37 °C

[Ref.: #69049]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67931]

Observation

it has higher chances of being only a colonizer

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67931]		potassium tellurite ChEBI	-	reduction
[Ref.: #67931]		tween 80 ChEBI	+	hydrolysis

	Enzyme	Enzyme activity	EC number
[Ref.: #67931]	arylsulfatase	+	3.1.6.1
[Ref.: #67931]	catalase	+	1.11.1.6
[Ref.: #67931]	nitrate reductase	+	1.7.99.4
[Ref.: #67931]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67931]	Sample type/isolated from	blood culture of a patient with a disseminated mycobacterial infection
[Ref.: #67931]	Geographic location (country and/or sea, region)	Lausanne University Hospital
[Ref.: #67931]	Country	Switzerland
[Ref.: #67931]	Country ISO 3 Code	CHE
[Ref.: #67931]	Continent	Europe

[Ref.: #69049]	Sample type/isolated from	Blood culture
[Ref.: #69049]	Geographic location (country and/or sea, region)	Lausanne
[Ref.: #69049]	Country	Switzerland
[Ref.: #69049]	Country ISO 3 Code	CHE
[Ref.: #69049]	Continent	Europe
[Ref.: #69049]	Geographic location	46.5200°/6.6336°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LS999932 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	382
Soil Samples	881
Animal Samples	203
Plant Samples	54
Total Samples	1520

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67931]	Mycobacterium sp. MK142 partial 16S rRNA gene, strain MK142=CCUG 72128=DSM 107152, isolate MK142, clone MK142	LS999932	1525	ENA	2341080 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium pseudokansasii MK142	GCA_900566075	contig	GenBank	2341080 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium pseudokansasii MK142 NCBI: GCA_900566075.1
[Ref.: #69480]	flagellated	no	98.935	no
[Ref.: #69480]	gram-positive	yes	88.514	no
[Ref.: #69480]	anaerobic	no	98.583	no
[Ref.: #69480]	aerobic	yes	87.03	no
[Ref.: #69480]	halophile	no	91.085	no
[Ref.: #69480]	spore-forming	no	84.455	no
[Ref.: #69480]	thermophile	no	98.666	yes
[Ref.: #69480]	glucose-util	yes	62.846	no
[Ref.: #69480]	motile	no	95.005	no
[Ref.: #69480]	glucose-ferment	no	89.726	no

Availability in culture collections External links

[Ref.: #67931]

Culture collection no.

CCUG 72128, DSM 107152

[Ref.: #114803]

SI-ID 398562

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.	Tagini F, Aeby S, Bertelli C, Droz S, Casanova C, Prod'hom G, Jaton K, Greub G	Int J Syst Evol Microbiol	10.1099/ijsem.0.003378	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67931

Florian Tagini, Sébastien Aeby, Claire Bertelli, Sara Droz, Carlo Casanova, Guy Prod'hom, Katia Jaton, Gilbert Greub: Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.. IJSEM 69: 1696 - 1704 2019 ( DOI 10.1099/ijsem.0.003378 )

#69049

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107152

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114803

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398562.1 )

* These data were automatically processed and therefore are not curated

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