Name: Mycobacterium innocens MK13
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 166497

Type strain:

Species: Mycobacterium innocens

Strain Designation: MK13

Culture col. no.: CCUG 72126, DSM 107161

Strain history: <- F. Tagini, Lausanne University Hospital; MK13

NCBI tax ID(s): 2341083 (species)

SI-ID 408014

DSM 107161

Section

Mycobacterium innocens MK13 is a mesophilic bacterium that was isolated from expectoration of a patient.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Mycobacteriaceae*
	Genus	*Mycobacterium*
	Species	**Mycobacterium innocens**
	Full Scientific Name (LPSN)	Mycobacterium innocens Tagini et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #67931]	Colony color	beige
[Ref.: #67931]	Incubation period	14 days
[Ref.: #67931]	Cultivation medium used	7H10

[Ref.: #67931]	Pigment production	yes
[Ref.: #67931]	Pigment name	Photochrome

Information on culture and growth conditions Culture and growth conditions

[Ref.: #69048]

Culture medium

MIDDLEBROOK MEDIUM (DSMZ Medium 645)

[Ref.: #69048]

Culture medium growth

[Ref.: #69048]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #67931]		optimum	37 °C
[Ref.: #67931]	no	growth	25 °C
[Ref.: #67931]	no	growth	45 °C
[Ref.: #69048]		growth	37 °C

[Ref.: #67931]	Temperature range	mesophilic
[Ref.: #67931]	Temperature range	thermophilic
[Ref.: #69048]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #67931]		potassium tellurite ChEBI	-	reduction
[Ref.: #67931]		tween 80 ChEBI	+	hydrolysis

	Enzyme	Enzyme activity	EC number
[Ref.: #67931]	arylsulfatase	-	3.1.6.1
[Ref.: #67931]	catalase	+	1.11.1.6
[Ref.: #67931]	nitrate reductase	+	1.7.99.4
[Ref.: #67931]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67931]	Sample type/isolated from	expectoration of a patient
[Ref.: #67931]	Geographic location (country and/or sea, region)	Lausanne University Hospital
[Ref.: #67931]	Country	Switzerland
[Ref.: #67931]	Country ISO 3 Code	CHE
[Ref.: #67931]	Continent	Europe

[Ref.: #69048]	Sample type/isolated from	Expectoration (Human)
[Ref.: #69048]	Geographic location (country and/or sea, region)	Lausanne
[Ref.: #69048]	Country	Switzerland
[Ref.: #69048]	Country ISO 3 Code	CHE
[Ref.: #69048]	Continent	Europe
[Ref.: #69048]	Geographic location	46.5200°/6.6336°
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence LS999933 (>99% sequence identity) for Mycobacterium from Microbeatlas

Aquatic Samples	382
Soil Samples	881
Animal Samples	203
Plant Samples	54
Total Samples	1520

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67931]	Mycobacterium sp. MK13 partial 16S rRNA gene, strain MK13, isolate MK13, clone MK13=CCUG 72126=DSM 107161	LS999933	1527	ENA	2341083 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mycobacterium innocens MK13	GCA_900566055	contig	GenBank	2341083 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mycobacterium innocens MK13 NCBI: GCA_900566055.1
[Ref.: #69480]	flagellated	no	98.918	no
[Ref.: #69480]	gram-positive	yes	87.283	no
[Ref.: #69480]	anaerobic	no	98.36	no
[Ref.: #69480]	aerobic	yes	89.19	no
[Ref.: #69480]	halophile	no	92.337	no
[Ref.: #69480]	spore-forming	no	84.291	no
[Ref.: #69480]	thermophile	no	98.279	no
[Ref.: #69480]	glucose-util	yes	65.983	no
[Ref.: #69480]	motile	no	95.723	no
[Ref.: #69480]	glucose-ferment	no	91.167	no

Availability in culture collections External links

[Ref.: #67931]

Culture collection no.

CCUG 72126, DSM 107161

[Ref.: #114802]

SI-ID 408014

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.	Tagini F, Aeby S, Bertelli C, Droz S, Casanova C, Prod'hom G, Jaton K, Greub G	Int J Syst Evol Microbiol	10.1099/ijsem.0.003378	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67931

Florian Tagini, Sébastien Aeby, Claire Bertelli, Sara Droz, Carlo Casanova, Guy Prod'hom, Katia Jaton, Gilbert Greub: Phylogenomics reveal that Mycobacterium kansasii subtypes are species-level lineages. Description of Mycobacterium pseudokansasii sp. nov., Mycobacterium innocens sp. nov. and Mycobacterium attenuatum sp. nov.. IJSEM 69: 1696 - 1704 2019 ( DOI 10.1099/ijsem.0.003378 )

#69048

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 107161

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114802

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408014.1 )

* These data were automatically processed and therefore are not curated

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