Strain identifier
BacDive ID: 5557
Type strain:
Species: Flavobacterium antarcticum
Strain Designation: AT1026
Strain history: CIP <- 2005, JCM <- J. Chun, Seoul, Korea: strain AT1026
NCBI tax ID(s): 1111730 (strain), 271155 (species)
General
@ref: 8265
BacDive-ID: 5557
DSM-Number: 19726
keywords: Gram-negative, psychrophilic, aerobe, Bacteria, 16S sequence, rod-shaped, genome sequence
description: Flavobacterium antarcticum AT1026 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from soil sample of a penguin habitat.
NCBI tax id
NCBI tax id | Matching level |
---|---|
271155 | species |
1111730 | strain |
strain history
<- JCM/RIKEN <- J. Chun, Seoul Nat. Univ.; AT1026 |
J. Chun AT1026. |
<- J Chun, Seoul Nat. Univ. |
doi: 10.13145/bacdive5557.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidetes
- domain: Bacteria
- phylum: Bacteroidetes
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium antarcticum
- full scientific name: Flavobacterium antarcticum Yi et al. 2005
@ref: 8265
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium antarcticum
full scientific name: Flavobacterium antarcticum Yi et al. 2005 emend. Hahnke et al. 2016
strain designation: AT1026
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility |
---|---|---|---|---|---|
31373 | negative | 0.9 µm | 0.35 µm | rod-shaped | no |
67771 | negative |
pigmentation
- @ref: 31373
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
8265 | TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) | yes | https://bacmedia.dsmz.de/medium/545 | Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water |
37576 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
8265 | positive | growth | 15 | psychrophilic |
31373 | positive | growth | 5-24.1 | psychrophilic |
31373 | positive | optimum | 21.2 | psychrophilic |
37576 | positive | growth | 15 | psychrophilic |
67770 | positive | growth | 15 | psychrophilic |
67771 | positive | growth | 15 | psychrophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
31373 | positive | growth | 06-10 |
31373 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
31373 | aerobe |
67771 | aerobe |
spore formation
- @ref: 31373
- spore formation: no
halophily
- @ref: 31373
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-4 %
observation
@ref | observation |
---|---|
67770 | quinones: MK-6 |
67771 | quinones: MK-6 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
31373 | 17234 | glucose | + | carbon source |
31373 | 17306 | maltose | + | carbon source |
enzymes
@ref | value | activity | ec |
---|---|---|---|
31373 | acid phosphatase | + | 3.1.3.2 |
31373 | alkaline phosphatase | + | 3.1.3.1 |
31373 | catalase | + | 1.11.1.6 |
31373 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | continent | country | origin.country |
---|---|---|---|---|---|
8265 | soil sample of a penguin habitat | King George Island, King Sejong Station | Australia and Oceania | ||
67771 | From soil, a habit of penguin | near the King Sejong Station on King George Island, Antarctia | Australia and Oceania | Antarctica | ATA |
67770 | Soil of penguin habitats near the King Sejong Station on King George Island | King George Island | Antarctica | Antarctica | ATA |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Soil |
#Host | #Birds |
Safety information
risk assessment
- @ref: 8265
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Flavobacterium antarcticum 16S rRNA gene, type strain DSM19726T | FM163401 | 1550 | ena | 1111730 |
8265 | Flavobacterium antarcticum DSM 19726 strain AT1026 16S ribosomal RNA gene, partial sequence | AY581113 | 1438 | ena | 1111730 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Flavobacterium antarcticum DSM 19726 DSM 19726 | GCA_000419685 | contig | ncbi | 1111730 |
66792 | Flavobacterium antarcticum DSM 19726 | 1111730.5 | wgs | patric | 1111730 |
66792 | Flavobacterium antarcticum DSM 19726 | 2513237111 | draft | img | 1111730 |
67771 | Flavobacterium antarcticum DSM 19726, whole genome shotgun sequencing project | ATTM00000000 | ncbi | 1111730 |
GC content
@ref | GC-content | method |
---|---|---|
8265 | 38.0 | |
31373 | 38 | |
8265 | 35.0 | sequence analysis |
67770 | 38 | high performance liquid chromatography (HPLC) |
67771 | 38.0 | high performance liquid chromatography (HPLC) |
External links
@ref: 8265
culture collection no.: DSM 19726, CIP 108750, IMSNU 14042, JCM 12383, KCTC 12222, KCTC 23290, KCTC 52532, LMG 25319
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/745958 |
20218 | http://www.straininfo.net/strains/377264 |
20218 | http://www.straininfo.net/strains/556197 |
20218 | http://www.straininfo.net/strains/377261 |
20218 | http://www.straininfo.net/strains/386407 |
20218 | http://www.straininfo.net/strains/377267 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
---|---|---|---|---|---|---|---|
8265 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19726) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19726 | ||||
20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
27686 | 10.1099/ijs.0.63423-0 | 15774636 | |||||
31373 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 27686 | ||
37576 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/6413 | |||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |||||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc |