Strain identifier

BacDive ID: 5557

Type strain: Yes

Species: Flavobacterium antarcticum

Strain Designation: AT1026

Strain history: CIP <- 2005, JCM <- J. Chun, Seoul, Korea: strain AT1026

NCBI tax ID(s): 1111730 (strain), 271155 (species)

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General

@ref: 8265

BacDive-ID: 5557

DSM-Number: 19726

keywords: gram-negative, psychrophilic, aerobe, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Flavobacterium antarcticum AT1026 is an aerobe, psychrophilic, gram-negative bacterium that was isolated from soil sample of a penguin habitat.

strain history: <- JCM/RIKEN <- J. Chun, Seoul Nat. Univ.; AT1026

doi: 10.13145/bacdive5557.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium antarcticum
  • full scientific name: Flavobacterium antarcticum Yi et al. 2005

@ref: 8265

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium antarcticum

full scientific name: Flavobacterium antarcticum Yi et al. 2005 emend. Hahnke et al. 2016

strain designation: AT1026

type strain: yes

Morphology

cell morphology

  • @ref: 31373
  • gram stain: negative
  • cell length: 0.9 µm
  • cell width: 0.35 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31373
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8265TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium545.pdf
37576MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
8265positivegrowth15psychrophilic
31373positivegrowth5-24.1psychrophilic
31373positiveoptimum21.2psychrophilic
37576positivegrowth15psychrophilic

culture pH

@refabilitytypepH
31373positivegrowth06-10
31373positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 31373
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31373
  • spore formation: no

halophily

  • @ref: 31373
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-4 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3137317234glucose+carbon source
3137317306maltose+carbon source

enzymes

@refvalueactivityec
31373acid phosphatase+3.1.3.2
31373alkaline phosphatase+3.1.3.1
31373catalase+1.11.1.6
31373cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 8265
  • sample type: soil sample of a penguin habitat
  • geographic location: King George Island, King Sejong Station
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Birds

Safety information

risk assessment

  • @ref: 8265
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Flavobacterium antarcticum 16S rRNA gene, type strain DSM19726TFM1634011550ena1111730
8265Flavobacterium antarcticum DSM 19726 strain AT1026 16S ribosomal RNA gene, partial sequenceAY5811131438ena1111730

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium antarcticum DSM 19726GCA_000419685contigncbi1111730
66792Flavobacterium antarcticum DSM 197261111730.5wgspatric1111730
66792Flavobacterium antarcticum DSM 197262513237111permanentimg1111730

GC content

@refGC-contentmethod
826538.0
3137338
826535.0sequence analysis

External links

@ref: 8265

culture collection no.: DSM 19726, AT1026, CIP 108750, IMSNU 14042, JCM 12383, KCTC 12222

straininfo link

@refpassport
20218http://www.straininfo.net/strains/745958
20218http://www.straininfo.net/strains/377264
20218http://www.straininfo.net/strains/556197
20218http://www.straininfo.net/strains/377261
20218http://www.straininfo.net/strains/386407
20218http://www.straininfo.net/strains/377267

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
8265Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19726)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19726
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2768610.1099/ijs.0.63423-0
31373Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information27686
37576Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6413
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)