Strain identifier
BacDive ID: 169119
Type strain: 
Species: Roseicitreum antarcticum
Strain Designation: ZS2-28
NCBI tax ID(s): 564137 (species)
version 7.1
General
@ref: 20215
BacDive-ID: 169119
keywords: 16S sequence, Bacteria
description: Roseicitreum antarcticum ZS2-28 is a bacterium of the family Rhodobacteraceae.
NCBI tax id
- NCBI tax id: 564137
- Matching level: species
doi: 10.13145/bacdive169119.20221219.7.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Rhodobacteraceae
- genus: Roseicitreum
- species: Roseicitreum antarcticum
- full scientific name: Roseicitreum antarcticum Yu et al. 2011
@ref: 20215
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Roseicitreum
species: Roseicitreum antarcticum
full scientific name: Roseicitreum antarcticum Yu et al. 2011
strain designation: ZS2-28
type strain: yes
Isolation, sampling and environmental information
taxonmaps
- @ref: 69479
- File name: preview.99_57307.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_11227;97_31891;98_40856;99_57307&stattab=map
- Last taxonomy: Roseicitreum antarcticum subclade
- 16S sequence: FJ196006
- Sequence Identity:
- Total samples: 143
- soil counts: 4
- aquatic counts: 127
- animal counts: 8
- plant counts: 4
Safety information
risk assessment
- @ref: 20215
- biosafety level: 1
- biosafety level comment: Risk group
Sequence information
16S sequences
- @ref: 20215
- description: Roseicitreum antarcticum strain ZS2-28 16S ribosomal RNA gene, partial sequence
- accession: FJ196006
- length: 1429
- database: ena
- NCBI tax ID: 564137
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Roseicitreum antarcticum ZS2-28 | GCA_014681765 | complete | ncbi | 564137 |
| 66792 | Roseicitreum antarcticum CGMCC 1.8894 | GCA_900107025 | scaffold | ncbi | 564137 |
| 66792 | Salmonella enterica subsp. enterica serovar Give NY_FSL S10-1814 | GCA_002106715 | contig | patric | 46626 |
External links
@ref: 20215
culture collection no.: CGMCC 1.8894, LMG 24863
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20889763 | Roseicitreum antarcticum gen. nov., sp. nov., an aerobic bacteriochlorophyll a-containing alphaproteobacterium isolated from Antarctic sandy intertidal sediment. | Yu Y, Yan SL, Li HR, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.024885-0 | 2010 | Aerobiosis, Alphaproteobacteria/chemistry/*classification/genetics/*isolation & purification, Antarctic Regions, Bacterial Typing Techniques, Bacteriochlorophyll A/*analysis, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Heterotrophic Processes, Hydroxybutyrates/metabolism, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Polyesters/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Metabolism |
| Phylogeny | 30457514 | Arenibacillus arenosus gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from sea sand. | Kim JH, Kanjanasuntree R, Kim DH, Lee JS, Sukhoom A, Kantachote D, Kim W | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003121 | 2018 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Oceans and Seas, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/isolation & purification, Sequence Analysis, DNA, *Silicon Dioxide, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |