Enterobacter cloacae NCDC 279-56 | Type strain | DSM 30054, ATCC 13047, CIP 60.85, IFO 13535, NBRC 13535, NCTC 10005, WDCM 00083

Strain identifier

BacDive ID: 4373

Type strain:

Species: Enterobacter cloacae

Strain Designation: NCDC 279-56

Culture col. no.: DSM 30054, ATCC 13047, CIP 60.85, IFO 13535, NBRC 13535, NCTC 10005, WDCM 00083

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #9103]	Domain	Bacteria
[Ref.: #9103]	Phylum	Proteobacteria
[Ref.: #9103]	Class	Gammaproteobacteria
[Ref.: #9103]	Order	Enterobacteriales, not validated
[Ref.: #9103]	Family	Enterobacteriaceae
[Ref.: #9103]	Genus	Enterobacter
[Ref.: #9103]	Species	Enterobacter cloacae
[Ref.: #9103]	Full Scientific Name	Enterobacter cloacae subsp. cloacae (Jordan 1890) Hormaeche and Edwards 1960
[Ref.: #9103]	Strain Designation	NCDC 279-56
[Ref.: #9103]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	19-11-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Gammaproteobacteria		Int. J. Syst. Evol. Microbiol. 55:2235
[Ref.: #20215]	Family	Enterobacteriaceae		Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Genus	Enterobacter	genus (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Species	Enterobacter cloacae	comb. nov. (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Full Scientific Name	Enterobacter cloacae (Jordan 1890) Hormaeche and Edwards 1960

[Ref.: #20215]

Synonym

Enterobacter cloacae subsp. cloacae

Information on morphological and physiological propertiesMorphology and physiology

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #9103]	7431	+	+	-	+	+	-	-	-	-	+	-	+	+	-	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #9103]	6372	+	+	-	+	+	-	-	-	-	+	-	+	+	-	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Note that the displayed test results represent raw data and therefore may deviate!

Antibiotic susceptibility testing

Test 1

Test 2

Test 3

Reference

[Ref.: #9103]
Mueller-Hinton Agar
30
1
aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
resistant0
20
20
resistant0
resistant0
28
30
30
28
24
20
22
6
10-12
resistant0
38-40
40
14
32
18
resistant0
16
22
18
20
26
resistant0
24
32
resistant0
resistant0
resistant0
resistant0
20

[Ref.: #9103]
Mueller-Hinton Agar
30

aerob
yes
Inhibition zone diameter in mm
resistant0
resistant0
resistant0
18
20
resistant0
6
28
30
30
26
26-28
22
24
resistant0
12
resistant0
38
32
14
30
16-18
resistant0
16
22
18
18-20
26-28
resistant0
26
34
resistant0
resistant0
resistant0
resistant0
20

[Ref.: #9103]
Mueller-Hinton Agar



yes
Inhibition zone diameter in mm
resistant0
resistant0
resistant0
20-22
20-22
resistant0
resistant0
30
32
30
26-28
28
22
24
resistant0
12
resistant0
38
40
14
30-32
18
resistant0
16
34
20
20
28
resistant0
28
34
resistant0
resistant0
resistant0
resistant0
22

Only first 15 entries are displayed. Click here to see all.

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #9103]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a), 30°C

[Ref.: #9103]

Culture medium growth

[Ref.: #9103]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #41820]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41820]

Culture medium growth

[Ref.: #41820]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #9103]			growth	30 ̊C
[Ref.: #41820]			growth	30 ̊C

[Ref.: #9103]	Temperature range	mesophilic
[Ref.: #41820]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #9103]

Sample type/isolated from

spinal fluid

Isolation sources categories

#Host Body Product

#Fluids

#Cerebrospinal fluid

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #9103]	Pathogenicity (human)	yes
[Ref.: #9103]	Pathogenicity (animal)	yes
[Ref.: #9103]	Biosafety level	2	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #9103]	16S rRNA gene, Marker Gene (EMBL Direct submission)	Enterobacter cloacae subsp. cloacae partial 16S rRNA gene, type strain DSM 30054T	HE978272		1529	336306
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Enterobacter cloacae gyrB gene for gyrase B, partial cds, strain:ATCC13047	AB084011		1171	550	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Enterobacter cloacae groEL gene for GroEL, complete cds, strain: NBRC 13535	AB375471		1647	550	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Enterobacter cloacae mutS gene for DNA mismatch repair protein MutS, complete cds	AB447986		3091	550	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Enterobacter cloacae subsp. cloacae gene for 16S rRNA, partial sequence, strain: NBRC 13535	AB680426	16S	1465	336306	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae DNA gyrase A (gyrA) gene, partial cds	AF052256		589	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae 16S ribosomal RNA, partial 3' end, strain NCTC 10005 T	AJ001236	16S	509	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae 16S ribosomal RNA, partial 5' end, strain NCTC 10005 T	AJ001245	16S	509	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae partial 16S rRNA gene, strain ATCC13047T	AJ251469	16S	1511	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae partial gyrB gene for DNA gyrase B subunit strain CIP 60.85T, ATCC 13047T	AJ300553		972	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae ompC gene for OmpC porin	AJ316539		1209	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae ompF gene for ompF porin	AJ316540		1266	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae partial 16S rRNA gene, strain ATCC 13047T	AJ417484	16S	420	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae partial hemB gene for porphobilinogen synthase, strain ATCC 13047T	AJ426520		299	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae partial rpoB gene for RNA polymerase beta subunit, type strain ATCC13047T	AJ543726		1008	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae partial 23S rRNA gene, type strain DSM 30054T	AJ549515		831	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 284 from Patent WO0123604	AX109551		817	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 2219 from Patent WO0123604	AX111486		115	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 2240 from Patent WO0123604	AX111507		69	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 2260 from Patent WO0123604	AX111527		273	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 internal transcribed spacer 1, complete sequence	AY116915		342	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae pentaerythritol tetranitrate reductase (onr) gene, complete cds	AY388474		1392	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae 60 kDa chaperonin (cpn60) gene, partial cds	AY835620		555	550	*
[Ref.: #20218]	GenBank Genome project data	Enterobacter cloacae subsp. cloacae ATCC 13047, complete genome	CP001918	WGS	5314581	716541	*
[Ref.: #20218]	GenBank Genome project data	Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence	CP001919		199562	716541	*
[Ref.: #20218]	GenBank Genome project data	Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_B, complete sequence	CP001920		84653	716541	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Enterobacter cloacae gyrA gene for GyrA subunit of Enterobacter cloacae DNA gyrase, partial cds	D88980		197	550	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Enterobacter cloacae parC gene, partial cds	D88981		148	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 origin of replication oriC, complete sequence	DQ227470		291	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae subsp. cloacae strain CIP 60.85 elongation factor EF-G (fusA) gene, partial cds	EU010019		633	336306	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae subsp. cloacae strain CIP 60.85 leucine tRNA synthetase (leuS) gene, partial cds	EU010046		642	336306	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae subsp. cloacae strain CIP 60.85 CTP synthetase (pyrG) gene, partial cds	EU010073		306	336306	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae subsp. cloacae strain CIP 60.85 RNA polymerase beta subunit (rpoB) gene, partial cds	EU010100		501	336306	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 ThdF (thdF) gene, partial cds	EU569339		1320	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 RecN (recN) gene, complete cds	EU569432		1662	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 RpoA (rpoA) gene, partial cds	EU569542		926	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 elongation factor EF-G (fusA) gene, partial cds	EU642956		633	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 heat shock protein 60 (hsp60) gene, partial cds	EU643113		273	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 leucine tRNA synthetase (leuS) gene, partial cds	EU643163		642	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 CTP synthetase (pyrG) gene, partial cds	EU643213		306	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter sp. ATCC 13047 ribosomal protein L2 (rplB) gene, partial cds	EU643263		333	547603	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 RNA polymerase beta subunit (rpoB) gene, partial cds	EU643264		501	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 gyrase B subunit (gyrB) gene, partial cds	EU643470		417	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 16S ribosomal RNA gene, partial sequence	FJ971883	16S	795	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Enterobacter cloacae partial 16S rRNA gene, strain ATCC 13047	FM207092	16S	397	550	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Enterobacter cloacae subsp. cloacae ATCC 13047 transfer-messenger mRNA Enter_cloac_13047, single chain mature transcript	HG786923		364	716541	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 elongation factor tu (tuf) gene, partial cds	JX397946		515	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 DNA gyrase subunit B (gyrB) gene, partial cds	JX983651		1055	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 16S ribosomal RNA gene, partial sequence	KC768786	16S	1369	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 16S ribosomal RNA gene, partial sequence	KC768826	16S	699	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae strain ATCC 13047 23S ribosomal RNA gene, partial sequence	KC768842		586	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae 16S ribosomal RNA gene, partial sequence	U65720	16S	517	550	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Enterobacter cloacae RNA polymerase beta-subunit (rpoB) gene, partial cds	U77435		512	550	*

Availability in culture collectionsStrain availability

[Ref.: #9103]

Culture collection no.

DSM 30054, ATCC 13047, CIP 60.85, IFO 13535, NBRC 13535, NCTC 10005, WDCM 00083

[Ref.: #9103]

Strain history

<- ATCC <- NCDC, 279-56

[Ref.: #20218]

Associated Passport(s) in StrainInfo

52256, 233846, 52259, 332556, 52264, 866233

References

#9103

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 30054

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41820 ; Curators of the CIP;
* These References are textmined

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