Cupriavidus metallidurans CH34 | Type strain | DSM 2839, LMG 1195

Strain identifier

BacDive ID: 2038

Type strain:

Species: Cupriavidus metallidurans

Strain Designation: CH34

Section

Name and taxonomic classification
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #1235]	Domain	Bacteria
[Ref.: #1235]	Phylum	Proteobacteria
[Ref.: #1235]	Class	Betaproteobacteria
[Ref.: #1235]	Order	Burkholderiales
[Ref.: #1235]	Family	Burkholderiaceae
[Ref.: #1235]	Genus	Cupriavidus
[Ref.: #1235]	Species	Cupriavidus metallidurans
[Ref.: #1235]	Full Scientific Name	Cupriavidus metallidurans (Goris et al. 2001) Vandamme and Coenye 2004
[Ref.: #1235]	Strain Designation	CH34
[Ref.: #1235]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Betaproteobacteria		Int. J. Syst. Evol. Microbiol. 56:1
[Ref.: #20215]	Family	Burkholderiaceae
[Ref.: #20215]	Genus	Cupriavidus	gen. nov. (VP)	Int. J. Syst. Bacteriol. 37:323*
[Ref.: #20215]	Species	Cupriavidus metallidurans	comb. nov. (VL)	Int. J. Syst. Evol. Microbiol. 54:2287
[Ref.: #20215]	Full Scientific Name	Cupriavidus metallidurans (Goris et al. 2001) Vandamme and Coenye 2004

[Ref.: #20215]	Synonym	Ralstonia metallidurans
[Ref.: #20215]	Synonym	Wautersia metallidurans

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #1235]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1), 30°C

[Ref.: #1235]

Culture medium growth

[Ref.: #1235]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #1235]

Culture medium

MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81), 30°C

[Ref.: #1235]

Culture medium growth

[Ref.: #1235]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #40692]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #40692]

Culture medium growth

[Ref.: #40692]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1235]			growth	30 ̊C
[Ref.: #40692]			growth	30 ̊C

[Ref.: #1235]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #1235]

Sample type/isolated from

decantation tank of zink factory

[Ref.: #1235]

Country

Belgium

[Ref.: #1235]

Continent

Europe

Isolation sources categories

#Engineered	#Built environment	#Container (reservoir)
#Engineered	#Industrial	#Engineered product
#Engineered	#Industrial	#Plant (factory)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #1235]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia sp. CH34 insertion sequence IS1086	X58441	1112	266264	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Ralstonia eutropha cytochrome cd1 nitrite reductase (nir) gene, partial cds	AF114789	778	106590	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont72, whole genome shotgun sequence	AAAI02000001	1816924	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont71, whole genome shotgun sequence	AAAI02000002	1073625	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont70, whole genome shotgun sequence	AAAI02000003	611961	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont65, whole genome shotgun sequence	AAAI02000004	381686	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont69, whole genome shotgun sequence	AAAI02000005	324997	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont67, whole genome shotgun sequence	AAAI02000006	319318	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont64, whole genome shotgun sequence	AAAI02000007	304130	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont68, whole genome shotgun sequence	AAAI02000008	270811	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont66, whole genome shotgun sequence	AAAI02000009	256654	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont61, whole genome shotgun sequence	AAAI02000010	203888	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont62, whole genome shotgun sequence	AAAI02000011	193695	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont63, whole genome shotgun sequence	AAAI02000012	180602	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont60, whole genome shotgun sequence	AAAI02000013	137138	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont59, whole genome shotgun sequence	AAAI02000014	110652	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont57, whole genome shotgun sequence	AAAI02000015	80826	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont56, whole genome shotgun sequence	AAAI02000016	69591	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont58, whole genome shotgun sequence	AAAI02000017	62883	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont54, whole genome shotgun sequence	AAAI02000018	59270	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont53, whole genome shotgun sequence	AAAI02000019	47414	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont52, whole genome shotgun sequence	AAAI02000020	39736	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont55, whole genome shotgun sequence	AAAI02000021	36615	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont48, whole genome shotgun sequence	AAAI02000022	24568	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont47, whole genome shotgun sequence	AAAI02000023	24414	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont50, whole genome shotgun sequence	AAAI02000024	21413	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont46, whole genome shotgun sequence	AAAI02000025	19089	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont45, whole genome shotgun sequence	AAAI02000026	18621	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont43, whole genome shotgun sequence	AAAI02000027	17374	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont51, whole genome shotgun sequence	AAAI02000028	17023	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont42, whole genome shotgun sequence	AAAI02000029	14784	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont44, whole genome shotgun sequence	AAAI02000030	12015	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont49, whole genome shotgun sequence	AAAI02000031	10507	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont41, whole genome shotgun sequence	AAAI02000032	9865	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont39, whole genome shotgun sequence	AAAI02000033	8280	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont34, whole genome shotgun sequence	AAAI02000034	6656	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont35, whole genome shotgun sequence	AAAI02000035	4407	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont31, whole genome shotgun sequence	AAAI02000036	4223	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont32, whole genome shotgun sequence	AAAI02000037	4103	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont40, whole genome shotgun sequence	AAAI02000038	3967	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont37, whole genome shotgun sequence	AAAI02000039	3751	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont36, whole genome shotgun sequence	AAAI02000040	3686	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont30, whole genome shotgun sequence	AAAI02000041	2929	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont38, whole genome shotgun sequence	AAAI02000042	2770	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont33, whole genome shotgun sequence	AAAI02000043	2171	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont26, whole genome shotgun sequence	AAAI02000044	2128	266264	*
[Ref.: #20218]	Whole Genome Shotgun (WGS) Sequence INSDC	Ralstonia metallidurans CH34 2351356_Cont28, whole genome shotgun sequence	AAAI02000045	1728	266264	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Ralstonia metallidurans CH34 insertion sequence ISRaleut2 transposase gene, complete cds	AF236817	1331	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia sp. CH34 upstream region of czc with czcN, mgtC and some Orfs	AJ001159	3050	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia sp. CH34 aleO gene and orf333	AJ001224	4132	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia sp. CH34 dnaK gene	AJ001727	2509	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia sp. CH34 transposon IS1087, strain CH34	AJ243722	1330	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia sp. CH34 estA gene for esterase	AJ251831	1711	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia sp. CH34 plasmid pMOL28 cobalt-nickel-resistance system (cnrY, cnrX, cnrH, cnrC, cnrB, cnrA and cnrT genes) and tnpA gene (partial)	AJ276513	10146	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia metallidurans copper resistance operon (copSRABCDGFH genes)	AJ278983	17624	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia metallidurans lead resistance operon (pbrTRABCD genes and partial tnp gene)	AJ278984	8890	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia metallidurans pMOL28 plasmid chrB1 gene, chrA1 gene and chrC gene	AJ313327	3289	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia metallidurans rpoH gene, gene for pirin, yhiB gene and gene for putative ABC transporter ATPase subunit (partial)	AJ313328	4107	266264	*
[Ref.: #20218]	GenBank Genome project data	Cupriavidus metallidurans CH34, complete genome	CP000352	3928089	266264	*
[Ref.: #20218]	GenBank Genome project data	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	CP000353	2580084	266264	*
[Ref.: #20218]	GenBank Genome project data	Cupriavidus metallidurans CH34 plasmid pMOL30, complete sequence	CP000354	233720	266264	*
[Ref.: #20218]	GenBank Genome project data	Cupriavidus metallidurans CH34 plasmid pMOL28, complete sequence	CP000355	171459	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	TPA: Cupriavidus metallidurans CH34 SRP RNA for signal recognition particle RNA	HG323199	101	266264	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Cupriavidus metallidurans CH34 small toxic RNA 1, complete sequence	JQ317273	176	266264	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Cupriavidus metallidurans CH34 small toxic RNA 2, complete sequence	JQ317274	61	266264	*
[Ref.: #20218]	INSDC Sequence	Ralstonia sp. CH34 cnrX (cnrX), cnrH (cnrH), cnrC (cnrC), cnrB (cnrB), and transmembrane transporter (cnrA) genes, complete cds	M91650	8528	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia metallidurans CH34 plasmid pMOL30	X71400	233755	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia metallidurans CH34 plasmid pMOL28	X90708	171461	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia sp. CH34 aleB and cysM genes	X97499	4290	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia sp. CH34 czcN, czcI, czcB, czcA, czcD, czcR, and czcS genes	X98451	11300	266264	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Ralstonia sp. CH34 16S rRNA gene, strain CH34	Y10824	1493	266264	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Cupriavidus metallidurans strain CIP 107179 16S ribosomal RNA gene, partial sequence	EU024161	1315	119219	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Cupriavidus metallidurans strain CIP 107179 DNA gyrase subunit beta (gyrB) gene, partial cds	EU024218	432	119219	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Cupriavidus metallidurans strain CIP 107179 RNA polymerase beta subunit (rpoB) gene, partial cds	EU024286	708	119219	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Cupriavidus metallidurans gene for 16S ribosomal RNA, strain: DSM 2839	D87999	1462	119219	*
[Ref.: #20218]	EMBL Genome project data	Cupriavidus metallidurans partial hisKA gene for histidine protein kinase, strain LMG1195	FR775898	414	119219	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Cupriavidus metallidurans gene for 16S rRNA, partial sequence, strain: NBRC 102507	AB681841	1457	119219	*

Availability in culture collectionsStrain availability

[Ref.: #1235]

Culture collection no.

DSM 2839, LMG 1195

[Ref.: #1235]

Strain history

<- H.G. Schlegel <- M. Mergeay, strain CH34 (Ralstonia eutropha)

[Ref.: #20218]

Associated Passport(s) in StrainInfo

2870, 2868

References

#1235

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2839

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40692 ; Curators of the CIP;
* These References are textmined

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