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pmid = {3028382}
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journal = {J Biol Chem},
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title = {Coupling of carbon monoxide oxidation to CO2 and H2 with the phosphorylation of ADP in acetate-grown Methanosarcina barkeri.},
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journal = {Eur J Biochem},
year = {1986},
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@article{lin390501,
title = {Primary structure of the chromosomal protein HMb from the archaebacteria Methanosarcina barkeri.},
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journal = {Eur J Biochem},
year = {1986},
doi = {10.1111/j.1432-1033.1986.tb10493.x},
pmid = {3098561}
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title = {Methanogens and the diversity of archaebacteria.},
author = {Jones WJ, Nagle DP, Whitman WB.},
journal = {Microbiol Rev},
year = {1987},
doi = {10.1128/mr.51.1.135-177.1987},
pmid = {3104748}
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@article{lin181544,
title = {Nickel utilization by microorganisms.},
author = {Hausinger RP.},
journal = {Microbiol Rev},
year = {1987},
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@article{lin390598,
title = {In vitro methane and methyl coenzyme M formation from acetate: evidence that acetyl-CoA is the required intermediate activated form of acetate.},
author = {Grahame DA, Stadtman TC.},
journal = {Biochem Biophys Res Commun},
year = {1987},
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@article{lin390652,
title = {Conservation of structure in the human gene encoding argininosuccinate synthetase and the argG genes of the archaebacteria Methanosarcina barkeri MS and Methanococcus vannielii.},
author = {Morris CJ, Reeve JN.},
journal = {J Bacteriol},
year = {1988},
doi = {10.1128/jb.170.7.3125-3130.1988},
pmid = {3133361}
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@article{lin181531,
title = {Folic acid and pteroylpolyglutamate contents of archaebacteria.},
author = {Worrell VE, Nagle DP.},
journal = {J Bacteriol},
year = {1988},
doi = {10.1128/jb.170.9.4420-4423.1988},
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@article{lin390581,
title = {Characterization of the chromosomal protein MC1 from the thermophilic archaebacterium Methanosarcina sp. CHTI 55 and its effect on the thermal stability of DNA.},
author = {Chartier F, Laine B, Sautiere P.},
journal = {Biochim Biophys Acta},
year = {1988},
doi = {10.1016/0167-4781(88)90035-8},
pmid = {3142520}
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@article{lin390562,
title = {A simple chromatographic procedure for the detection of cyclized archaebacterial glycerol-bisdiphytanyl-glycerol tetraether core lipids.},
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journal = {J Gen Microbiol},
year = {1988},
doi = {10.1099/00221287-134-12-3159},
pmid = {3151990}
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@article{lin181530,
title = {Plasmid DNA from the acetotrophic methanogen Methanosarcina acetivorans.},
author = {Sowers KR, Gunsalus RP.},
journal = {J Bacteriol},
year = {1988},
doi = {10.1128/jb.170.10.4979-4982.1988},
pmid = {3170490}
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@article{lin390601,
title = {Comparative analysis of genes encoding methyl coenzyme M reductase in methanogenic bacteria.},
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journal = {Mol Gen Genet},
year = {1988},
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pmid = {3185509}
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@article{lin390590,
title = {A methyl-CoM methylreductase system from methanogenic bacterium strain Gö 1 not requiring ATP for activity.},
author = {Deppenmeier U, Blaut M, Jussofie A, Gottschalk G.},
journal = {FEBS Lett},
year = {1988},
doi = {10.1016/0014-5793(88)81031-7},
pmid = {3197839}
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@article{lin390641,
title = {Bioenergetics of methanogenesis from acetate by Methanosarcina barkeri.},
author = {Peinemann S, Muller V, Blaut M, Gottschalk G.},
journal = {J Bacteriol},
year = {1988},
doi = {10.1128/jb.170.3.1369-1372.1988},
pmid = {3343222}
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@article{lin390478,
title = {The transmembrane electrochemical gradient of Na+ as driving force for methanol oxidation in Methanosarcina barkeri.},
author = {Muller V, Blaut M, Gottschalk G.},
journal = {Eur J Biochem},
year = {1988},
doi = {10.1111/j.1432-1033.1988.tb13931.x},
pmid = {3350015}
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@article{lin390458,
title = {Ethane production by Methanosarcina barkeri during growth in ethanol supplemented medium.},
author = {Belay N, Daniels L.},
journal = {Antonie Van Leeuwenhoek},
year = {1988},
doi = {10.1007/bf00419199},
pmid = {3395108}
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@article{lin390594,
title = {Interconversion of F430 derivatives of methanogenic bacteria.},
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journal = {Antonie Van Leeuwenhoek},
year = {1988},
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@article{lin390613,
title = {Inhibition of methanogenesis in pure cultures by ammonia, fatty acids, and heavy metals, and protection against heavy metal toxicity by sewage sludge.},
author = {Jarrell KF, Saulnier M, Ley A.},
journal = {Can J Microbiol},
year = {1987},
doi = {10.1139/m87-093},
pmid = {3621086}
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author = {Grahame DA, Stadtman TC.},
journal = {J Biol Chem},
year = {1987},
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@article{lin390568,
title = {Archaebacterial phenylalanyl-tRNA synthetase. Accuracy of the phenylalanyl-tRNA synthetase from the archaebacterium Methanosarcina barkeri, Zn(II)-dependent synthesis of diadenosine 5',5'''-P1,P4-tetraphosphate, and immunological relationship of OFFnylalanyl-tRNA synthetases from different urkingdoms.},
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year = {1984},
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journal = {J Bacteriol},
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doi = {10.1128/jb.147.2.282-288.1981},
pmid = {6167563}
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@article{lin390603,
title = {Ferredoxin from Methanosarcina barkeri: evidence for the presence of a three-iron center.},
author = {Moura I, Moura JJ, Huynh BH, Santos H, LeGall J, Xavier AV.},
journal = {Eur J Biochem},
year = {1982},
doi = {10.1111/j.1432-1033.1982.tb06751.x},
pmid = {6290216}
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@article{lin390565,
title = {Coupling of ATP synthesis and methane formation from methanol and molecular hydrogen in Methanosarcina barkeri.},
author = {Blaut M, Gottschalk G.},
journal = {Eur J Biochem},
year = {1984},
doi = {10.1111/j.1432-1033.1984.tb08178.x},
pmid = {6327309}
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@article{lin390553,
title = {Reductive activation of methanol: 5-hydroxybenzimidazolylcobamide methyltransferase of Methanosarcina barkeri.},
author = {van der Meijden P, van der Lest C, van der Drift C, Vogels GD.},
journal = {Biochem Biophys Res Commun},
year = {1984},
doi = {10.1016/0006-291x(84)91460-8},
pmid = {6367742}
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@article{lin390550,
title = {Phenylalanyl-tRNA synthetase from the archaebacterium Methanosarcina barkeri.},
author = {Rauhut R, Gabius HJ, Kuhn W, Cramer F.},
journal = {J Biol Chem},
year = {1984},
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pmid = {6373755}
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title = {Hydrogen-using bacteria in a methanogenic acetate enrichment culture.},
author = {Archer DB.},
journal = {J Appl Bacteriol},
year = {1984},
doi = {10.1111/j.1365-2672.1984.tb04703.x},
pmid = {6423605}
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author = {Mountfort DO, Asher RA.},
journal = {Biochem Biophys Res Commun},
year = {1984},
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pmid = {6433916}
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title = {Quantification of coenzymes and related compounds from methanogenic bacteria by high-performance liquid chromatography.},
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journal = {Anal Biochem},
year = {1983},
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journal = {Arch Microbiol},
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pmid = {6615129}
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title = {Genome complexity of methanogenic bacteria.},
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journal = {J Bacteriol},
year = {1984},
doi = {10.1128/jb.158.2.628-631.1984},
pmid = {6725206}
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title = {Amino acid sequence of a 3Fe:3S ferredoxin from the "archaebacterium" Methanosarcina barkeri (DSM 800).},
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journal = {J Biol Chem},
year = {1982},
doi = {S0021-9258(19)45364-7},
pmid = {6754724}
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title = {Acetate, methanol and carbon dioxide as substrates for growth of Methanosarcina barkeri.},
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journal = {Antonie Van Leeuwenhoek},
year = {1980},
doi = {10.1007/bf00394016},
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@article{lin181520,
title = {Energetics of growth of a defined mixed culture of Desulfovibrio vulgaris and Methanosarcina barkeri: maintenance energy coefficient of the sulfate-reducing organism in the absence and presence of its partner.},
author = {Traore AS, Gaudin C, Hatchikian CE, Le Gall J, Belaich JP.},
journal = {J Bacteriol},
year = {1983},
doi = {10.1128/jb.155.3.1260-1264.1983},
pmid = {6885720}
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title = {Role of vitamin B12 in methyl transfer for methane biosynthesis by Methanosarcina barkeri.},
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journal = {Science},
year = {1982},
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pmid = {7063887}
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@article{lin390619,
title = {Chloroform degradation in methanogenic methanol enrichment cultures and by Methanosarcina barkeri 227.},
author = {Bagley DM, Gossett JM.},
journal = {Appl Environ Microbiol},
year = {1995},
doi = {10.1128/aem.61.9.3195-3201.1995},
pmid = {7574627}
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@article{lin181539,
title = {Involvement of the "A" isozyme of methyltransferase II and the 29-kilodalton corrinoid protein in methanogenesis from monomethylamine.},
author = {Burke SA, Krzycki JA.},
journal = {J Bacteriol},
year = {1995},
doi = {10.1128/jb.177.15.4410-4416.1995},
pmid = {7635826}
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@article{lin390312,
title = {Substrate and accessory protein requirements and thermodynamics of acetyl-CoA synthesis and cleavage in Methanosarcina barkeri.},
author = {Grahame DA, DeMoll E.},
journal = {Biochemistry},
year = {1995},
doi = {10.1021/bi00014a015},
pmid = {7718564}
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@article{lin390607,
title = {Growth of Methanosarcina barkeri (Fusaro) under nonmethanogenic conditions by the fermentation of pyruvate to acetate: ATP synthesis via the mechanism of substrate level phosphorylation.},
author = {Bock AK, Schonheit P.},
journal = {J Bacteriol},
year = {1995},
doi = {10.1128/jb.177.8.2002-2007.1995},
pmid = {7721692}
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@article{lin390298,
title = {Two new phospholipids, hydroxyarchaetidylglycerol and hydroxyarchaetidylethanolamine, from the Archaea Methanosarcina barkeri.},
author = {Nishihara M, Koga Y.},
journal = {Biochim Biophys Acta},
year = {1995},
doi = {10.1016/0005-2760(94)00178-2},
pmid = {7827120}
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@article{lin181532,
title = {Structural aspects and immunolocalization of the F420-reducing and non-F420-reducing hydrogenases from Methanobacterium thermoautotrophicum Marburg.},
author = {Braks IJ, Hoppert M, Roge S, Mayer F.},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.24.7677-7687.1994},
pmid = {8002593}
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@article{lin390307,
title = {Refolding of denatured restriction endonucleases with ribosomal preparations from Methanosarcina barkeri.},
author = {Bera AK, Das B, Chattopadhyay S, Dasgupta C.},
journal = {Biochem Mol Biol Int},
year = {1994},
pmid = {8019437}
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@article{lin181551,
title = {Genetic organization of the mau gene cluster in Methylobacterium extorquens AM1: complete nucleotide sequence and generation and characteristics of mau mutants.},
author = {Chistoserdov AY, Chistoserdova LV, McIntire WS, Lidstrom ME.},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.13.4052-4065.1994},
pmid = {8021187}
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@article{lin390402,
title = {Formylmethanofuran dehydrogenases from methanogenic Archaea. Substrate specificity, EPR properties and reversible inactivation by cyanide of the molybdenum or tungsten iron-sulfur proteins.},
author = {Bertram PA, Karrasch M, Schmitz RA, Bocher R, Albracht SP, Thauer RK.},
journal = {Eur J Biochem},
year = {1994},
doi = {10.1111/j.1432-1033.1994.tb18646.x},
pmid = {8125106}
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@article{lin181517,
title = {Characterization of the iron-sulfur clusters in ferredoxin from acetate-grown Methanosarcina thermophila.},
author = {Clements AP, Kilpatrick L, Lu WP, Ragsdale SW, Ferry JG.},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.9.2689-2693.1994},
pmid = {8169218}
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@article{lin390323,
title = {Purification of a two-subunit cytochrome-b-containing heterodisulfide reductase from methanol-grown Methanosarcina barkeri.},
author = {Heiden S, Hedderich R, Setzke E, Thauer RK.},
journal = {Eur J Biochem},
year = {1994},
doi = {10.1111/j.1432-1033.1994.tb18800.x},
pmid = {8174566}
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@article{lin390529,
title = {Two N5,N10-methylenetetrahydromethanopterin dehydrogenases in the extreme thermophile Methanopyrus kandleri: characterization of the coenzyme F420-dependent enzyme.},
author = {Klein AR, Koch J, Stetter KO, Thauer RK.},
journal = {Arch Microbiol},
year = {1993},
doi = {10.1007/bf00249123},
pmid = {8215796}
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@article{lin390498,
title = {Differential in vitro methylation and synthesis of the 480-kilodalton corrinoid protein in Methanosarcina barkeri grown on different substrates.},
author = {Kremer J, Burchfield S, Frazier C, Krzycki J.},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.1.253-255.1994},
pmid = {8282704}
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@article{lin181510,
title = {Isolation of two novel corrinoid proteins from acetate-grown Methanosarcina barkeri.},
author = {Kremer JD, Cao X, Krzycki J.},
journal = {J Bacteriol},
year = {1993},
doi = {10.1128/jb.175.15.4824-4833.1993},
pmid = {8335638}
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@article{lin390349,
title = {Function of methylcobalamin: coenzyme M methyltransferase isoenzyme II in Methanosarcina barkeri.},
author = {Yeliseev A, Gartner P, Harms U, Linder D, Thauer RK.},
journal = {Arch Microbiol},
year = {1993},
doi = {10.1007/bf00249031},
pmid = {8352643}
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@article{lin390394,
title = {Molecular studies on an ancient gene encoding for carbamoyl-phosphate synthetase.},
author = {Schofield JP.},
journal = {Clin Sci (Lond)},
year = {1993},
doi = {10.1042/cs0840119},
pmid = {8382576}
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@article{lin390411,
title = {Substrate and cofactor reactivity of a carbon monoxide dehydrogenase-corrinoid enzyme complex: stepwise reduction of iron-sulfur and corrinoid centers, the corrinoid Co2+/1+ redox midpoint potential, and overall synthesis of acetyl-CoA.},
author = {Grahame DA.},
journal = {Biochemistry},
year = {1993},
doi = {10.1021/bi00091a033},
pmid = {8399227}
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@article{lin181507,
title = {Involvement of an activation protein in the methanol:2-mercaptoethanesulfonic acid methyltransferase reaction in Methanosarcina barkeri.},
author = {Daas PJ, Gerrits KA, Keltjens JT, van der Drift C, Vogels GD.},
journal = {J Bacteriol},
year = {1993},
doi = {10.1128/jb.175.5.1278-1283.1993},
pmid = {8444790}
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@article{lin390369,
title = {Purification of a cytochrome b containing H2:heterodisulfide oxidoreductase complex from membranes of Methanosarcina barkeri.},
author = {Heiden S, Hedderich R, Setzke E, Thauer RK.},
journal = {Eur J Biochem},
year = {1993},
doi = {10.1111/j.1432-1033.1993.tb17791.x},
pmid = {8477725}
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@article{lin390526,
title = {Cloning and sequencing of the genes coding for the A and B subunits of vacuolar-type Na(+)-ATPase from Enterococcus hirae. Coexistence of vacuolar- and F0F1-type ATPases in one bacterial cell.},
author = {Takase K, Yamato I, Kakinuma Y.},
journal = {J Biol Chem},
year = {1993},
doi = {10.1016/s0021-9258(19)50245-9},
pmid = {8505293}
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@article{lin390308,
title = {Biochemical characterization of the 8-hydroxy-5-deazaflavin-reactive hydrogenase from Methanosarcina barkeri Fusaro.},
author = {Michel R, Massanz C, Kostka S, Richter M, Fiebig K.},
journal = {Eur J Biochem},
year = {1995},
doi = {10.1111/j.1432-1033.1995.727_3.x},
pmid = {8521835}
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@article{lin390611,
title = {Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227.},
author = {Chien YT, Zinder SH.},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.1.143-148.1996},
pmid = {8550408}
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@article{lin390359,
title = {Reactivity of a paramagnetic enzyme--CO adduct in acetyl-CoA synthesis and cleavage.},
author = {Grahame DA, Khangulov S, DeMoll E.},
journal = {Biochemistry},
year = {1996},
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pmid = {8555232}
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@article{lin390435,
title = {The argG gene of Streptomyces clavuligerus has low homology to unstable argG from other actinomycetes: effect of amplification on clavulanic acid biosynthesis.},
author = {Rodriguez-Garcia A, Martin JF, Liras P.},
journal = {Gene},
year = {1995},
doi = {10.1016/0378-1119(95)00667-2},
pmid = {8566818}
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title = {Primary structure and properties of the formyltransferase from the mesophilic Methanosarcina barkeri: comparison with the enzymes from thermophilic and hyperthermophilic methanogens.},
author = {Kunow J, Shima S, Vorholt JA, Thauer RK.},
journal = {Arch Microbiol},
year = {1996},
doi = {10.1007/s002030050303},
pmid = {8593103}
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@article{lin390278,
title = {A polyferredoxin with eight [4Fe-4S] clusters as a subunit of molybdenum formylmethanofuran dehydrogenase from Methanosarcina barkeri.},
author = {Vorholt JA, Vaupel M, Thauer RK.},
journal = {Eur J Biochem},
year = {1996},
doi = {10.1111/j.1432-1033.1996.t01-1-00309.x},
pmid = {8617280}
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@article{lin390291,
title = {Specific roles of methylcobamide:coenzyme M methyltransferase isozymes in metabolism of methanol and methylamines in Methanosarcina barkeri.},
author = {Ferguson DJ, Krzycki JA, Grahame DA.},
journal = {J Biol Chem},
year = {1996},
doi = {10.1074/jbc.271.9.5189},
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@article{lin390314,
title = {Catalytic properties, molecular composition and sequence alignments of pyruvate: ferredoxin oxidoreductase from the methanogenic archaeon Methanosarcina barkeri (strain Fusaro).},
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journal = {Eur J Biochem},
year = {1996},
doi = {10.1111/j.1432-1033.1996.0035n.x},
pmid = {8620891}
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@article{lin390330,
title = {Partial reactions catalyzed by protein components of the acetyl-CoA decarbonylase synthase enzyme complex from Methanosarcina barkeri.},
author = {Grahame DA, DeMoll E.},
journal = {J Biol Chem},
year = {1996},
doi = {10.1074/jbc.271.14.8352},
pmid = {8626532}
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@article{lin390640,
title = {Coenzyme M methylase activity of the 480-kilodalton corrinoid protein from Methanosarcina barkeri.},
author = {Tallant TC, Krzycki JA.},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.5.1295-1301.1996},
pmid = {8631705}
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@article{lin390287,
title = {Methylcobalamin: coenzyme M methyltransferase isoenzymes MtaA and MtbA from Methanosarcina barkeri. Cloning, sequencing and differential transcription of the encoding genes, and functional overexpression of the mtaA gene in Escherichia coli.},
author = {Harms U, Thauer RK.},
journal = {Eur J Biochem},
year = {1996},
doi = {10.1111/j.1432-1033.1996.00653.x},
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@article{lin390283,
title = {Methylcobamide:coenzyme M methyltransferase isozymes from Methanosarcina barkeri. Physicochemical characterization, cloning, sequence analysis, and heterologous gene expression.},
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@article{lin390277,
title = {Purification and properties of an enzyme involved in the ATP-dependent activation of the methanol:2-mercaptoethanesulfonic acid methyltransferase reaction in Methanosarcina barkeri.},
author = {Daas PJ, Wassenaar RW, Willemsen P, Theunissen RJ, Keltjens JT, van der Drift C, Vogels GD.},
journal = {J Biol Chem},
year = {1996},
doi = {10.1074/jbc.271.37.22339},
pmid = {8798394}
}
@article{lin390264,
title = {Activation mechanism of methanol:5-hydroxybenzimidazolylcobamide methyltransferase from Methanosarcina barkeri.},
author = {Daas PJ, Hagen WR, Keltjens JT, van der Drift C, Vogels GD.},
journal = {J Biol Chem},
year = {1996},
doi = {10.1074/jbc.271.37.22346},
pmid = {8798395}
}
@article{lin390476,
title = {Molecular, genetic, and biochemical characterization of the serC gene of Methanosarcina barkeri Fusaro.},
author = {Metcalf WW, Zhang JK, Shi X, Wolfe RS.},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.19.5797-5802.1996},
pmid = {8824630}
}
@article{lin390551,
title = {Sequence and transcript analysis of a novel Methanosarcina barkeri methyltransferase II homolog and its associated corrinoid protein homologous to methionine synthase.},
author = {Paul L, Krzycki JA.},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.22.6599-6607.1996},
pmid = {8932317}
}
@article{lin390602,
title = {Involvement of methyltransferase-activating protein and methyltransferase 2 isoenzyme II in methylamine:coenzyme M methyltransferase reactions in Methanosarcina barkeri Fusaro.},
author = {Wassenaar RW, Daas PJ, Geerts WJ, Keltjens JT, van der Drift C.},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.23.6937-6944.1996},
pmid = {8955317}
}
@article{lin390448,
title = {Unleashing hydrogenase activity in carbon monoxide dehydrogenase/acetyl-CoA synthase and pyruvate:ferredoxin oxidoreductase.},
author = {Menon S, Ragsdale SW.},
journal = {Biochemistry},
year = {1996},
doi = {10.1021/bi9615598},
pmid = {8961945}
}
@article{lin181513,
title = {Reconstitution of trimethylamine-dependent coenzyme M methylation with the trimethylamine corrinoid protein and the isozymes of methyltransferase II from Methanosarcina barkeri.},
author = {Ferguson DJ, Krzycki JA.},
journal = {J Bacteriol},
year = {1997},
doi = {10.1128/jb.179.3.846-852.1997},
pmid = {9006042}
}
@article{lin390260,
title = {Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Purification, properties and encoding genes of the corrinoid protein MT1.},
author = {Sauer K, Harms U, Thauer RK.},
journal = {Eur J Biochem},
year = {1997},
doi = {10.1111/j.1432-1033.1997.t01-1-00670.x},
pmid = {9057830}
}
@article{lin390273,
title = {Heterodisulfide reductase from methanol-grown cells of Methanosarcina barkeri is not a flavoenzyme.},
author = {Kunkel A, Vaupel M, Heim S, Thauer RK, Hedderich R.},
journal = {Eur J Biochem},
year = {1997},
doi = {10.1111/j.1432-1033.1997.00226.x},
pmid = {9063468}
}
@article{lin181504,
title = {A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectors.},
author = {Metcalf WW, Zhang JK, Apolinario E, Sowers KR, Wolfe RS.},
journal = {Proc Natl Acad Sci U S A},
year = {1997},
doi = {10.1073/pnas.94.6.2626},
pmid = {9122246}
}
@article{lin390281,
title = {[Amine oxidase from the bacterial strain Methanosarcina barkeri 27].},
author = {Dianova MM, Nikol'skaia EB, Iagodina OV, Grinberg BA, Lukmane IR.},
journal = {Zh Evol Biokhim Fiziol},
year = {1996},
pmid = {9148612}
}
@article{lin390295,
title = {Reconstitution of Monomethylamine:Coenzyme M methyl transfer with a corrinoid protein and two methyltransferases purified from Methanosarcina barkeri.},
author = {Burke SA, Krzycki JA.},
journal = {J Biol Chem},
year = {1997},
doi = {10.1074/jbc.272.26.16570},
pmid = {9195968}
}
@article{lin390250,
title = {The iron-sulfur centers of the pyruvate:ferredoxin oxidoreductase from Methanosarcina barkeri (Fusaro).},
author = {Bock AK, Schonheit P, Teixeira M.},
journal = {FEBS Lett},
year = {1997},
doi = {10.1016/s0014-5793(97)00998-8},
pmid = {9315687}
}
@article{lin390269,
title = {The active species of 'CO2' utilized by formylmethanofuran dehydrogenase from methanogenic Archaea.},
author = {Vorholt JA, Thauer RK.},
journal = {Eur J Biochem},
year = {1997},
doi = {10.1111/j.1432-1033.1997.00919.x},
pmid = {9342247}
}
@article{lin390245,
title = {Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Zinc dependence and thermodynamics of the methanol:cob(I)alamin methyltransferase reaction.},
author = {Sauer K, Thauer RK.},
journal = {Eur J Biochem},
year = {1997},
doi = {10.1111/j.1432-1033.1997.t01-1-00280.x},
pmid = {9363780}
}
@article{lin18213,
title = {F0F1-ATPase genes from an archaebacterium, Methanosarcina barkeri.},
author = {Sumi M, Yohda M, Koga Y, Yoshida M},
journal = {Biochem Biophys Res Commun},
year = {1997},
doi = {10.1006/bbrc.1997.7809},
pmid = {9425287}
}
@article{lin390229,
title = {Two F420-reducing hydrogenases in methanosarcina barkeri },
author = {Vaupel M, Thauer RK.},
journal = {Arch Microbiol},
year = {1998},
doi = {10.1007/s002030050561},
pmid = {9477253}
}
@article{lin390274,
title = {An Escherichia coli hydrogenase-3-type hydrogenase in methanogenic archaea.},
author = {Kunkel A, Vorholt JA, Thauer RK, Hedderich R.},
journal = {Eur J Biochem},
year = {1998},
doi = {10.1046/j.1432-1327.1998.2520467.x},
pmid = {9546662}
}
@article{lin390588,
title = {Interactions between the promoter regions of nitrogenase structural genes (nifHDK2) and DNA-binding proteins from N2- and ammonium-grown cells of the archaeon Methanosarcina barkeri 227.},
author = {Chien Y, Helmann JD, Zinder SH.},
journal = {J Bacteriol},
year = {1998},
doi = {10.1128/jb.180.10.2723-2728.1998},
pmid = {9573159}
}
@article{lin390381,
title = {Thiol:fumarate reductase (Tfr) from Methanobacterium thermoautotrophicum--identification of the catalytic sites for fumarate reduction and thiol oxidation.},
author = {Heim S, Kunkel A, Thauer RK, Hedderich R.},
journal = {Eur J Biochem},
year = {1998},
doi = {10.1046/j.1432-1327.1998.2530292.x},
pmid = {9578488}
}
@article{lin181519,
title = {Clustered genes encoding the methyltransferases of methanogenesis from monomethylamine.},
author = {Burke SA, Lo SL, Krzycki JA.},
journal = {J Bacteriol},
year = {1998},
doi = {10.1128/jb.180.13.3432-3440.1998},
pmid = {9642198}
}
@article{lin390231,
title = {Purification and characterization of dimethylamine:5-hydroxybenzimidazolyl-cobamide methyltransferase from Methanosarcina barkeri Fusaro.},
author = {Wassenaar RW, Keltjens JT, van der Drift C, Vogels GD.},
journal = {Eur J Biochem},
year = {1998},
doi = {10.1046/j.1432-1327.1998.2530692.x},
pmid = {9654067}
}
@article{lin390243,
title = {Methanol:coenzyme M methyltransferase from Methanosarcina barkeri--identification of the active-site histidine in the corrinoid-harboring subunit MtaC by site-directed mutagenesis.},
author = {Sauer K, Thauer RK.},
journal = {Eur J Biochem},
year = {1998},
doi = {10.1046/j.1432-1327.1998.2530698.x},
pmid = {9654068}
}
@article{lin390378,
title = {Purification and properties of the heme- and iron-sulfur-containing heterodisulfide reductase from Methanosarcina thermophila.},
author = {Simianu M, Murakami E, Brewer JM, Ragsdale SW.},
journal = {Biochemistry},
year = {1998},
doi = {10.1021/bi9726483},
pmid = {9665708}
}
@article{lin390386,
title = {Overproduction and one-step purification of the N5,N10-methenyltetrahydromethanopterin cyclohydrolase (Mch) from the hyperthermophilic Methanopyrus kandleri.},
author = {Vaupel M, Vorholt JA, Thauer RK.},
journal = {Extremophiles},
year = {1998},
doi = {10.1007/s007920050038},
pmid = {9676239}
}
@article{lin390332,
title = {Interspecific, intraspecific and interoperonic variability in the 16S rRNA gene of methanogens revealed by length and single-strand conformation polymorphism analysis.},
author = {Daffonchio D, De Biase A, Rizzi A, Sorlini C.},
journal = {FEMS Microbiol Lett},
year = {1998},
doi = {10.1111/j.1574-6968.1998.tb13116.x},
pmid = {9682489}
}
@article{lin390325,
title = {Tetramethylammonium:coenzyme M methyltransferase system from methanococcoides sp },
author = {Asakawa S, Sauer K, Liesack W, Thauer RK.},
journal = {Arch Microbiol},
year = {1998},
doi = {10.1007/s002030050636},
pmid = {9732435}
}
@article{lin390279,
title = {Redox-dependent acetyl transfer partial reaction of the acetyl-CoA decarbonylase/synthase complex: kinetics and mechanism.},
author = {Bhaskar B, DeMoll E, Grahame DA.},
journal = {Biochemistry},
year = {1998},
doi = {10.1021/bi9812423},
pmid = {9772177}
}
@article{lin390209,
title = {Investigation of serine hydroxymethyltransferase in methanogens.},
author = {Lin Z, Sparling R.},
journal = {Can J Microbiol},
year = {1998},
doi = {10.1139/cjm-44-7-652},
pmid = {9783425}
}
@article{lin390207,
title = {Activation and reaction kinetics of the dimethylamine/coenzyme M methyltransfer in Methanosarcina barkeri strain Fusaro.},
author = {Wassenaar RW, Keltjens JT, van der Drift C.},
journal = {Eur J Biochem},
year = {1998},
doi = {10.1046/j.1432-1327.1998.2580597.x},
pmid = {9874228}
}
@article{lin390510,
title = {sn-glycerol-1-phosphate-forming activities in Archaea: separation of archaeal phospholipid biosynthesis and glycerol catabolism by glycerophosphate enantiomers.},
author = {Nishihara M, Yamazaki T, Oshima T, Koga Y.},
journal = {J Bacteriol},
year = {1999},
doi = {10.1128/jb.181.4.1330-1333.1999},
pmid = {9973362}
}
@article{lin390587,
title = {Interactions between nitrogen fixation and osmoregulation in the methanogenic archaeon methanosarcina barkeri 227 },
author = {Brabban AD, Orcutt EN, Zinder SH.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.3.1222-1227.1999},
pmid = {10049887}
}
@article{lin390222,
title = {Methanol:coenzyme M methyltransferase from Methanosarcina barkeri -- substitution of the corrinoid harbouring subunit MtaC by free cob(I)alamin.},
author = {Sauer K, Thauer RK.},
journal = {Eur J Biochem},
year = {1999},
doi = {10.1046/j.1432-1327.1999.00355.x},
pmid = {10215883}
}
@article{lin390370,
title = {Differentiation of methanosaeta concilii and methanosarcina barkeri in anaerobic mesophilic granular sludge by fluorescent In situ hybridization and confocal scanning laser microscopy },
author = {Rocheleau S, Greer CW, Lawrence JR, Cantin C, Laramee L, Guiot SR.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.5.2222-2229.1999},
pmid = {10224023}
}
@article{lin390213,
title = {Purification, characterization, and primary structure of a monofunctional catalase from Methanosarcina barkeri.},
author = {Shima S, Netrusov A, Sordel M, Wicke M, Hartmann GC, Thauer RK.},
journal = {Arch Microbiol},
year = {1999},
doi = {10.1007/s002030050716},
pmid = {10382262}
}
@article{lin390362,
title = {Methanobacterium thermoautotrophicum encodes two multisubunit membrane-bound [NiFe] hydrogenases. Transcription of the operons and sequence analysis of the deduced proteins.},
author = {Tersteegen A, Hedderich R.},
journal = {Eur J Biochem},
year = {1999},
doi = {10.1046/j.1432-1327.1999.00692.x},
pmid = {10491142}
}
@article{lin390227,
title = {Purification and catalytic properties of Ech hydrogenase from Methanosarcina barkeri.},
author = {Meuer J, Bartoschek S, Koch J, Kunkel A, Hedderich R.},
journal = {Eur J Biochem},
year = {1999},
doi = {10.1046/j.1432-1327.1999.00738.x},
pmid = {10491189}
}
@article{lin390356,
title = {Occurrence of D-amino acids in a few archaea and dehydrogenase activities in hyperthermophile Pyrobaculum islandicum.},
author = {Nagata Y, Tanaka K, Iida T, Kera Y, Yamada R, Nakajima Y, Fujiwara T, Fukumori Y, Yamanaka T, Koga Y, Tsuji S, Kawaguchi-Nagata K.},
journal = {Biochim Biophys Acta},
year = {1999},
doi = {10.1016/s0167-4838(99)00208-3},
pmid = {10561548}
}
@article{lin390459,
title = {Estimation of methanogen biomass by quantitation of coenzyme M.},
author = {Elias DA, Krumholz LR, Tanner RS, Suflita JM.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.12.5541-5545.1999},
pmid = {10584015}
}
@article{lin390360,
title = {Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?},
author = {Kitabatake M, So MW, Tumbula DL, Soll D.},
journal = {J Bacteriol},
year = {2000},
doi = {10.1128/jb.182.1.143-145.2000},
pmid = {10613873}
}
@article{lin390244,
title = {Cysteinyl-tRNA formation: the last puzzle of aminoacyl-tRNA synthesis.},
author = {Li T, Graham DE, Stathopoulos C, Haney PJ, Kim HS, Vothknecht U, Kitabatake M, Hong KW, Eggertsson G, Curnow AW, Lin W, Celic I, Whitman W, Soll D.},
journal = {FEBS Lett},
year = {1999},
doi = {10.1016/s0014-5793(99)01550-1},
pmid = {10622715}
}
@article{lin390310,
title = {[Use of the level of G+C n DNA for studying the molecular phylogeny o f methanogenic archaebacteria].},
author = {Ivanov VN, Stabnikova EV.},
journal = {Mikrobiologiia},
year = {1999},
pmid = {10624685}
}
@article{lin390302,
title = {Isolation and identification of ruminal methanogens from grazing cattle.},
author = {Jarvis GN, Strompl C, Burgess DM, Skillman LC, Moore ER, Joblin KN.},
journal = {Curr Microbiol},
year = {2000},
doi = {10.1007/s002849910065},
pmid = {10706664}
}
@article{lin390593,
title = {The trimethylamine methyltransferase gene and multiple dimethylamine methyltransferase genes of Methanosarcina barkeri contain in-frame and read-through amber codons.},
author = {Paul L, Ferguson DJ, Krzycki JA.},
journal = {J Bacteriol},
year = {2000},
doi = {10.1128/jb.182.9.2520-2529.2000},
pmid = {10762254}
}
@article{lin390646,
title = {Generation of dominant selectable markers for resistance to pseudomonic acid by cloning and mutagenesis of the ileS gene from the archaeon Methanosarcina barkeri fusaro.},
author = {Boccazzi P, Zhang JK, Metcalf WW.},
journal = {J Bacteriol},
year = {2000},
doi = {10.1128/jb.182.9.2611-2618.2000},
pmid = {10762266}
}
@article{lin390233,
title = {Methyl-coenzyme M formation in methanogenic archaea. Involvement of zinc in coenzyme M activation.},
author = {Sauer K, Thauer RK.},
journal = {Eur J Biochem},
year = {2000},
doi = {10.1046/j.1432-1327.2000.01245.x},
pmid = {10785368}
}
@article{lin390479,
title = {Analysis of genes encoding an alternative nitrogenase in the archaeon Methanosarcina barkeri 227.},
author = {Chien YT, Auerbuch V, Brabban AD, Zinder SH.},
journal = {J Bacteriol},
year = {2000},
doi = {10.1128/jb.182.11.3247-3253.2000},
pmid = {10809706}
}
@article{lin390252,
title = {N-carboxymethanofuran (carbamate) formation from methanofuran and CO2 in methanogenic archaea. Thermodynamics and kinetics of the spontaneous reaction.},
author = {Bartoschek S, Vorholt JA, Thauer RK, Geierstanger BH, Griesinger C.},
journal = {Eur J Biochem},
year = {2000},
doi = {10.1046/j.1432-1327.2000.01331.x},
pmid = {10824097}
}
@article{lin390191,
title = {Reconstitution of dimethylamine:coenzyme M methyl transfer with a discrete corrinoid protein and two methyltransferases purified from Methanosarcina barkeri.},
author = {Ferguson DJ, Gorlatova N, Grahame DA, Krzycki JA.},
journal = {J Biol Chem},
year = {2000},
doi = {10.1074/jbc.m910218199},
pmid = {10852929}
}
@article{lin390240,
title = {Comparison of three methyl-coenzyme M reductases from phylogenetically distant organisms: unusual amino acid modification, conservation and adaptation.},
author = {Grabarse W, Mahlert F, Shima S, Thauer RK, Ermler U.},
journal = {J Mol Biol},
year = {2000},
doi = {10.1006/jmbi.2000.4136},
pmid = {11023796}
}
@article{lin390185,
title = {Protection of Methanosarcina barkeri against oxidative stress: identification and characterization of an iron superoxide dismutase.},
author = {Brioukhanov A, Netrusov A, Sordel M, Thauer RK, Shima S.},
journal = {Arch Microbiol},
year = {2000},
doi = {10.1007/s002030000180},
pmid = {11041352}
}
@article{lin390198,
title = {The MtsA subunit of the methylthiol:coenzyme M methyltransferase of Methanosarcina barkeri catalyses both half-reactions of corrinoid-dependent dimethylsulfide: coenzyme M methyl transfer.},
author = {Tallant TC, Paul L, Krzycki JA.},
journal = {J Biol Chem},
year = {2001},
doi = {10.1074/jbc.m007514200},
pmid = {11073950}
}
@article{lin390196,
title = {Anaerobic bioconversion of cellulose by Ruminococcus albus, Methanobrevibacter smithii, and Methanosarcina barkeri.},
author = {Miller TL, Currenti E, Wolin MJ.},
journal = {Appl Microbiol Biotechnol},
year = {2000},
doi = {10.1007/s002530000430},
pmid = {11092623}
}
@article{lin390208,
title = {Hydrogen production by methanogens under low-hydrogen conditions.},
author = {Valentine DL, Blanton DC, Reeburgh WS.},
journal = {Arch Microbiol},
year = {2000},
doi = {10.1007/s002030000224},
pmid = {11195097}
}
@article{lin390633,
title = {Ammonia switch-off of nitrogen fixation in the methanogenic archaeon Methanococcus maripaludis: mechanistic features and requirement for the novel GlnB homologues, NifI(1) and NifI(2).},
author = {Kessler PS, Daniel C, Leigh JA.},
journal = {J Bacteriol},
year = {2001},
doi = {10.1128/jb.183.3.882-889.2001},
pmid = {11208785}
}
@article{lin390642,
title = {Microbial populations involved in cycling of dimethyl sulfide and methanethiol in freshwater sediments.},
author = {Lomans BP, Luderer R, Steenbakkers P, Pol A, van Der Drift C, Vogels GD, Op den Camp HJ.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.3.1044-1051.2001},
pmid = {11229890}
}
@article{lin390225,
title = {A paramagnetic species with unique EPR characteristics in the active site of heterodisulfide reductase from methanogenic archaea.},
author = {Madadi-Kahkesh S, Duin EC, Heim S, Albracht SP, Johnson MK, Hedderich R.},
journal = {Eur J Biochem},
year = {2001},
doi = {10.1046/j.1432-1327.2001.02141.x},
pmid = {11322875}
}
@article{lin390636,
title = {Oxaloacetate synthesis in the methanarchaeon Methanosarcina barkeri: pyruvate carboxylase genes and a putative Escherichia coli-type bifunctional biotin protein ligase gene (bpl/birA) exhibit a unique organization.},
author = {Mukhopadhyay B, Purwantini E, Kreder CL, Wolfe RS.},
journal = {J Bacteriol},
year = {2001},
doi = {10.1128/jb.183.12.3804-3810.2001},
pmid = {11371547}
}
@article{lin390574,
title = {Characterization of a heme-dependent catalase from Methanobrevibacter arboriphilus.},
author = {Shima S, Sordel-Klippert M, Brioukhanov A, Netrusov A, Linder D, Thauer RK.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.7.3041-3045.2001},
pmid = {11425719}
}
@article{lin390189,
title = {The amber codon in the gene encoding the monomethylamine methyltransferase isolated from Methanosarcina barkeri is translated as a sense codon.},
author = {James CM, Ferguson TK, Leykam JF, Krzycki JA.},
journal = {J Biol Chem},
year = {2001},
doi = {10.1074/jbc.m102929200},
pmid = {11435424}
}
@article{lin390162,
title = {Microbial growth by a net heat up-take: a calorimetric and thermodynamic study on acetotrophic methanogenesis by Methanosarcina barkeri.},
author = {Liu JS, Marison IW, von Stockar U.},
journal = {Biotechnol Bioeng},
year = {2001},
doi = {10.1002/bit.1176},
pmid = {11536139}
}
@article{lin390181,
title = {Zinc-thiolate intermediate in catalysis of methyl group transfer in Methanosarcina barkeri.},
author = {Gencic S, LeClerc GM, Gorlatova N, Peariso K, Penner-Hahn JE, Grahame DA.},
journal = {Biochemistry},
year = {2001},
doi = {10.1021/bi0112917},
pmid = {11669645}
}
@article{lin390544,
title = {Significance of two distinct types of tryptophan synthase beta chain in Bacteria, Archaea and higher plants.},
author = {Xie G, Forst C, Bonner C, Jensen RA.},
journal = {Genome Biol},
year = {2002},
doi = {10.1186/gb-2001-3-1-research0004},
pmid = {11806827}
}
@article{lin390263,
title = {Methanosarcina lacustris sp. nov., a new psychrotolerant methanogenic archaeon from anoxic lake sediments.},
author = {Simankova MV, Parshina SN, Tourova TP, Kolganova TV, Zehnder AJ, Nozhevnikova AN.},
journal = {Syst Appl Microbiol},
year = {2001},
doi = {10.1078/0723-2020-00058},
pmid = {11822671}
}
@article{lin390309,
title = {Purification and characterization of a membrane-bound enzyme complex from the sulfate-reducing archaeon Archaeoglobus fulgidus related to heterodisulfide reductase from methanogenic archaea.},
author = {Mander GJ, Duin EC, Linder D, Stetter KO, Hedderich R.},
journal = {Eur J Biochem},
year = {2002},
doi = {10.1046/j.1432-1033.2002.02839.x},
pmid = {11952791}
}
@article{lin390158,
title = {The role of zinc in the methylation of the coenzyme M thiol group in methanol:coenzyme M methyltransferase from Methanosarcina barkeri.},
author = {Kruer M, Haumann M, Meyer-Klaucke W, Thauer RK, Dau H.},
journal = {Eur J Biochem},
year = {2002},
doi = {10.1046/j.1432-1033.2002.02860.x},
pmid = {11985589}
}
@article{lin390247,
title = {Purification and characterization of recombinant malate synthase enzymes from Streptomyces coelicolor A3(2) and S. clavuligerus NRRL3585.},
author = {Loke P, Goh LL, Seng Soh B, Yeow P, Sim TS.},
journal = {J Ind Microbiol Biotechnol},
year = {2002},
doi = {10.1038/sj/jim/7000240},
pmid = {11986926}
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title = {Class I and class II lysyl-tRNA synthetase mutants and the genetic encoding of pyrrolysine in Methanosarcina spp.},
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title = {Post-translational modifications in the active site region of methyl-coenzyme M reductase from methanogenic and methanotrophic archaea.},
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title = {Subtractive hybridization and random arbitrarily primed PCR analyses of a benzoate-assimilating bacterium, Desulfotignum balticum.},
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title = {Structure of the alpha2epsilon2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarbonylase/synthase complex.},
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title = {Methanogenesis from methanol at low temperatures by a novel psychrophilic methanogen, "Methanolobus psychrophilus" sp. nov., prevalent in Zoige wetland of the Tibetan plateau.},
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journal = {Appl Environ Microbiol},
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title = {Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.},
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title = {Biodiversity of thermophilic prokaryotes with hydrolytic activities in hot springs of Uzon Caldera, Kamchatka (Russia).},
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title = {The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis.},
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title = {Differences in hydrogenase gene expression between Methanosarcina acetivorans and Methanosarcina barkeri.},
author = {Guss AM, Kulkarni G, Metcalf WW.},
journal = {J Bacteriol},
year = {2009},
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title = {Effect of biowaste sludge maturation on the diversity of thermophilic bacteria and archaea in an anaerobic reactor.},
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journal = {Appl Environ Microbiol},
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title = {Idiosyncratic helix-turn-helix motif in Methanosarcina barkeri seryl-tRNA synthetase has a critical architectural role.},
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title = {Effect of substrate concentration on carbon isotope fractionation during acetoclastic methanogenesis by Methanosarcina barkeri and M. acetivorans and in rice field soil.},
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journal = {Appl Environ Microbiol},
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journal = {Mikrobiologiia},
year = {2009},
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title = {Comparing flux balance analysis to network expansion: producibility, sustainability and the scope of compounds.},
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journal = {Genome Inform},
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title = {Genomic characterization of methanomicrobiales reveals three classes of methanogens.},
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title = {Genetic encoding and labeling of aliphatic azides and alkynes in recombinant proteins via a pyrrolysyl-tRNA Synthetase/tRNA(CUA) pair and click chemistry.},
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journal = {J Am Soc Mass Spectrom},
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title = {Novel domain arrangement in the crystal structure of a truncated acetyl-CoA synthase from Moorella thermoacetica.},
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journal = {Appl Environ Microbiol},
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title = {Identification of amino acids in the N-terminal domain of atypical methanogenic-type Seryl-tRNA synthetase critical for tRNA recognition.},
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journal = {Phys Biol},
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title = {Translation termination in pyrrolysine-utilizing archaea.},
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title = {Hydrogen is a preferred intermediate in the energy-conserving electron transport chain of Methanosarcina barkeri.},
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journal = {Proc Natl Acad Sci U S A},
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title = {Structure of the heme biosynthetic Pseudomonas aeruginosa porphobilinogen synthase in complex with the antibiotic alaremycin.},
author = {Heinemann IU, Schulz C, Schubert WD, Heinz DW, Wang YG, Kobayashi Y, Awa Y, Wachi M, Jahn D, Jahn M.},
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title = {Functional analysis of the three TATA binding protein homologs in Methanosarcina acetivorans.},
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journal = {J Bacteriol},
year = {2010},
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title = {Encoding multiple unnatural amino acids via evolution of a quadruplet-decoding ribosome.},
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journal = {Nature},
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title = {Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A.},
author = {Rohlin L, Gunsalus RP.},
journal = {BMC Microbiol},
year = {2010},
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title = {Study of completed archaeal genomes and proteomes: hypothesis of strong mutational AT pressure existed in their common predecessor.},
author = {Khrustalev VV, Barkovsky EV.},
journal = {Genomics Proteomics Bioinformatics},
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title = {Mass spectrometry defines the stoichiometry of ribosomal stalk complexes across the phylogenetic tree.},
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journal = {Mol Cell Proteomics},
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title = {Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPase.},
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title = {Characterization of energy-conserving hydrogenase B in Methanococcus maripaludis.},
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journal = {J Bacteriol},
year = {2010},
doi = {10.1128/jb.01446-09},
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title = {Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism.},
author = {Plugge CM, Scholten JCM, Culley DE, Nie L, Brockman FJ, Zhang W.},
journal = {Microbiology (Reading)},
year = {2010},
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title = {3'-5' tRNAHis guanylyltransferase in bacteria.},
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title = {Evaluation of methanogenic treatment of TMAH (tetra-methyl ammonium hydroxide) in a full-scale TFT-LCD wastewater treatment process.},
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journal = {Water Sci Technol},
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title = {Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis.},
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title = {Characterizing the metabolism of Dehalococcoides with a constraint-based model.},
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title = {Stimulation of methane generation from nonproductive coal by addition of nutrients or a microbial consortium.},
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journal = {Appl Environ Microbiol},
year = {2010},
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title = {Expanding the genetic code of yeast for incorporation of diverse unnatural amino acids via a pyrrolysyl-tRNA synthetase/tRNA pair.},
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title = {Destabilase-lysozyme of medicinal leech. Multifunctionality of recombinant protein.},
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journal = {Biochemistry (Mosc)},
year = {2010},
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title = {A novel pathway for the biosynthesis of heme in Archaea: genome-based bioinformatic predictions and experimental evidence.},
author = {Storbeck S, Rolfes S, Raux-Deery E, Warren MJ, Jahn D, Layer G.},
journal = {Archaea},
year = {2010},
doi = {10.1155/2010/175050},
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title = {Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily.},
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journal = {Nucleic Acids Res},
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@article{lin390361,
title = {Effect of spatial differences in microbial activity, pH, and substrate levels on methanogenesis initiation in refuse.},
author = {Staley BF, de Los Reyes FL, Barlaz MA.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.02349-10},
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title = {Metabolic reconstruction of the archaeon methanogen Methanosarcina Acetivorans.},
author = {Satish Kumar V, Ferry JG, Maranas CD.},
journal = {BMC Syst Biol},
year = {2011},
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title = {The structure, function and properties of sirohaem decarboxylase--an enzyme with structural homology to a transcription factor family that is part of the alternative haem biosynthesis pathway.},
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title = {Optimized plasmid systems for the incorporation of multiple different unnatural amino acids by evolved orthogonal ribosomes.},
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title = {Energy conservation by oxidation of formate to carbon dioxide and hydrogen via a sodium ion current in a hyperthermophilic archaeon.},
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title = {Production of Citrate by Anaerobic Fungi in the Presence of Co-culture Methanogens as Revealed by (1)H NMR Spectrometry.},
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title = {Methanosarcina spelaei sp. nov., a methanogenic archaeon isolated from a floating biofilm of a subsurface sulphurous lake.},
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journal = {Int J Syst Evol Microbiol},
year = {2014},
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title = {Measurement of microbial adhesive forces with a parallel plate flow chamber.},
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journal = {J Colloid Interface Sci},
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title = {Effect of sulfate on low-temperature anaerobic digestion.},
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journal = {Front Microbiol},
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title = {Synthesis of non-linear protein dimers through a genetically encoded Thiol-ene reaction.},
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title = {Effect of the addition of rice straw on microbial community in a sewage sludge digester.},
author = {Nakakihara E, Ikemoto-Yamamoto R, Honda R, Ohtsuki S, Takano M, Suetsugu Y, Watanabe H.},
journal = {Water Sci Technol},
year = {2014},
doi = {10.2166/wst.2014.261},
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title = {A multienzyme complex channels substrates and electrons through acetyl-CoA and methane biosynthesis pathways in Methanosarcina.},
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journal = {PLoS One},
year = {2014},
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title = {Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures.},
author = {Chen S, Rotaru AE, Liu F, Philips J, Woodard TL, Nevin KP, Lovley DR.},
journal = {Bioresour Technol},
year = {2014},
doi = {10.1016/j.biortech.2014.09.009},
pmid = {25285763}
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@article{lin390487,
title = {Isolation of acetogenic bacteria that induce biocorrosion by utilizing metallic iron as the sole electron donor.},
author = {Kato S, Yumoto I, Kamagata Y.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.02767-14},
pmid = {25304512}
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title = {Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria.},
author = {Caro-Quintero A, Konstantinidis KT.},
journal = {ISME J},
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@article{lin390485,
title = {Genetically encoded optochemical probes for simultaneous fluorescence reporting and light activation of protein function with two-photon excitation.},
author = {Luo J, Uprety R, Naro Y, Chou C, Nguyen DP, Chin JW, Deiters A.},
journal = {J Am Chem Soc},
year = {2014},
doi = {10.1021/ja5055862},
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@article{lin390625,
title = {Engineering the respiratory membrane-bound hydrogenase of the hyperthermophilic archaeon Pyrococcus furiosus and characterization of the catalytically active cytoplasmic subcomplex.},
author = {McTernan PM, Chandrayan SK, Wu CH, Vaccaro BJ, Lancaster WA, Adams MW, Adams MW.},
journal = {Protein Eng Des Sel},
year = {2015},
doi = {10.1093/protein/gzu051},
pmid = {25476267}
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title = {Genome annotation provides insight into carbon monoxide and hydrogen metabolism in Rubrivivax gelatinosus.},
author = {Wawrousek K, Noble S, Korlach J, Chen J, Eckert C, Yu J, Maness PC.},
journal = {PLoS One},
year = {2014},
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title = {Single-cell analysis reveals gene-expression heterogeneity in syntrophic dual-culture of Desulfovibrio vulgaris with Methanosarcina barkeri.},
author = {Qi Z, Pei G, Chen L, Zhang W.},
journal = {Sci Rep},
year = {2014},
doi = {10.1038/srep07478},
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title = {Mechanical and cell-to-cell adhesive properties of aggregated Methanosarcina.},
author = {Milkevych V, Donose BC, Juste-Poinapen N, Batstone DJ.},
journal = {Colloids Surf B Biointerfaces},
year = {2015},
doi = {10.1016/j.colsurfb.2014.12.035},
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@article{lin390659,
title = {Comparative genomic analysis of evolutionarily conserved but functionally uncharacterized membrane proteins in archaea: Prediction of novel components of secretion, membrane remodeling and glycosylation systems.},
author = {Makarova KS, Galperin MY, Koonin EV.},
journal = {Biochimie},
year = {2015},
doi = {10.1016/j.biochi.2015.01.004},
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@article{lin390358,
title = {A SelB/EF-Tu/aIF2gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).},
author = {Yanagisawa T, Ishii R, Hikida Y, Fukunaga R, Sengoku T, Sekine S, Yokoyama S.},
journal = {J Struct Funct Genomics},
year = {2015},
doi = {10.1007/s10969-015-9193-6},
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title = {Genetic basis for metabolism of methylated sulfur compounds in Methanosarcina species.},
author = {Fu H, Metcalf WW.},
journal = {J Bacteriol},
year = {2015},
doi = {10.1128/jb.02605-14},
pmid = {25691524}
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@article{lin390412,
title = {Air-adapted Methanosarcina acetivorans shows high methane production and develops resistance against oxygen stress.},
author = {Jasso-Chavez R, Santiago-Martinez MG, Lira-Silva E, Pineda E, Zepeda-Rodriguez A, Belmont-Diaz J, Encalada R, Saavedra E, Moreno-Sanchez R.},
journal = {PLoS One},
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@article{lin390224,
title = {Microbial dynamics during azo dye degradation in a UASB reactor supplied with yeast extract.},
author = {Silva SQ, Silva DC, Lanna MC, Baeta BE, Aquino SF.},
journal = {Braz J Microbiol},
year = {2014},
doi = {10.1590/s1517-83822014000400005},
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title = {The transcriptional response of microbial communities in thawing Alaskan permafrost soils.},
author = {Coolen MJ, Orsi WD.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00197},
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@article{lin390296,
title = {Influence of Martian regolith analogs on the activity and growth of methanogenic archaea, with special regard to long-term desiccation.},
author = {Schirmack J, Alawi M, Wagner D.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00210},
pmid = {25852668}
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@article{lin390573,
title = {Ubiquitination of the Dishevelled DIX domain blocks its head-to-tail polymerization.},
author = {Madrzak J, Fiedler M, Johnson CM, Ewan R, Knebel A, Bienz M, Chin JW.},
journal = {Nat Commun},
year = {2015},
doi = {10.1038/ncomms7718},
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@article{lin390635,
title = {Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession.},
author = {Cong J, Yang Y, Liu X, Lu H, Liu X, Zhou J, Li D, Yin H, Ding J, Zhang Y.},
journal = {Sci Rep},
year = {2015},
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@article{lin181525,
title = {Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea.},
author = {Oni O, Miyatake T, Kasten S, Richter-Heitmann T, Fischer D, Wagenknecht L, Kulkarni A, Blumers M, Shylin SI, Ksenofontov V, Costa BF, Klingelhofer G, Friedrich MW.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00365},
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title = {Variations in Temperature Sensitivity (Q10) of CH4 Emission from a Subtropical Estuarine Marsh in Southeast China.},
author = {Wang C, Lai DY, Tong C, Wang W, Huang J, Zeng C.},
journal = {PLoS One},
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@article{lin390404,
title = {Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate: teamwork or coexistence?},
author = {Ozuolmez D, Na H, Lever MA, Kjeldsen KU, Jorgensen BB, Plugge CM.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00492},
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@article{lin181534,
title = {Methanotrophic and Methanogenic Communities in Swiss Alpine Fens Dominated by Carex rostrata and Eriophorum angustifolium.},
author = {Cheema S, Zeyer J, Henneberger R.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.01519-15},
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@article{lin390497,
title = {The impact of Cystic Fibrosis Transmembrane Regulator Disruption on cardiac function and stress response.},
author = {Jiang K, Jiao S, Vitko M, Darrah R, Flask CA, Hodges CA, Yu X.},
journal = {J Cyst Fibros},
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title = {Expanding the Genetic Code for a Dinitrophenyl Hapten.},
author = {Ren W, Ji A, Wang MX, Ai HW.},
journal = {Chembiochem},
year = {2015},
doi = {10.1002/cbic.201500204},
pmid = {26185102}
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@article{lin181490,
title = {Link between capacity for current production and syntrophic growth in Geobacter species.},
author = {Rotaru AE, Woodard TL, Nevin KP, Lovley DR.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00744},
pmid = {26284037}
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@article{lin390313,
title = {Hybrid bioinorganic approach to solar-to-chemical conversion.},
author = {Nichols EM, Gallagher JJ, Liu C, Su Y, Resasco J, Yu Y, Sun Y, Yang P, Chang MC, Chang CJ.},
journal = {Proc Natl Acad Sci U S A},
year = {2015},
doi = {10.1073/pnas.1508075112},
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@article{lin390128,
title = {Transposase interaction with the beta sliding clamp: effects on insertion sequence proliferation and transposition rate.},
author = {Diaz-Maldonado H, Gomez MJ, Moreno-Paz M, San Martin-Uriz P, Amils R, Parro V, Lopez de Saro FJ.},
journal = {Sci Rep},
year = {2015},
doi = {10.1038/srep13329},
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@article{lin390010,
title = {Genetic, Genomic, and Transcriptomic Studies of Pyruvate Metabolism in Methanosarcina barkeri Fusaro.},
author = {Lopez Munoz MM, Schonheit P, Metcalf WW.},
journal = {J Bacteriol},
year = {2015},
doi = {10.1128/jb.00551-15},
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@article{lin390416,
title = {Evolutionary History of the Photolyase/Cryptochrome Superfamily in Eukaryotes.},
author = {Mei Q, Dvornyk V.},
journal = {PLoS One},
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@article{lin181481,
title = {The complete genome sequence of the rumen methanogen Methanosarcina barkeri CM1.},
author = {Lambie SC, Kelly WJ, Leahy SC, Li D, Reilly K, McAllister TA, Valle ER, Attwood GT, Altermann E.},
journal = {Stand Genomic Sci},
year = {2015},
doi = {10.1186/s40793-015-0038-5},
pmid = {26413197}
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@article{lin390192,
title = {Co-occurrence of Methanosarcina mazei and Geobacteraceae in an iron (III)-reducing enrichment culture.},
author = {Zheng S, Zhang H, Li Y, Zhang H, Wang O, Zhang J, Liu F.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00941},
pmid = {26441876}
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@article{lin390649,
title = {Identification of two mutations increasing the methanol tolerance of Corynebacterium glutamicum.},
author = {Lessmeier L, Wendisch VF.},
journal = {BMC Microbiol},
year = {2015},
doi = {10.1186/s12866-015-0558-6},
pmid = {26474849}
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title = {Carboxydotrophic growth of Geobacter sulfurreducens.},
author = {Geelhoed JS, Henstra AM, Stams AJ.},
journal = {Appl Microbiol Biotechnol},
year = {2016},
doi = {10.1007/s00253-015-7033-z},
pmid = {26481622}
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title = {Laboratory-scale bioaugmentation relieves acetate accumulation and stimulates methane production in stalled anaerobic digesters.},
author = {Town JR, Dumonceaux TJ.},
journal = {Appl Microbiol Biotechnol},
year = {2016},
doi = {10.1007/s00253-015-7058-3},
pmid = {26481626}
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@article{lin390113,
title = {Lysine-acetylation as a fundamental regulator of Ran function: Implications for signaling of proteins of the Ras-superfamily.},
author = {Knyphausen P, Kuhlmann N, de Boor S, Lammers M.},
journal = {Small GTPases},
year = {2015},
doi = {10.1080/21541248.2015.1103399},
pmid = {26507377}
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@article{lin390032,
title = {A Ferredoxin Disulfide Reductase Delivers Electrons to the Methanosarcina barkeri Class III Ribonucleotide Reductase.},
author = {Wei Y, Li B, Prakash D, Ferry JG, Elliott SJ, Stubbe J.},
journal = {Biochemistry},
year = {2015},
doi = {10.1021/acs.biochem.5b01092},
pmid = {26536144}
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@article{lin389864,
title = {Enhanced Radiation Resistance of Methanosarcina soligelidi SMA-21, a New Methanogenic Archaeon Isolated from a Siberian Permafrost-Affected Soil in Direct Comparison to Methanosarcina barkeri.},
author = {Morozova D, Moeller R, Rettberg P, Wagner D.},
journal = {Astrobiology},
year = {2015},
doi = {10.1089/ast.2015.1319},
pmid = {26544020}
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@article{lin390547,
title = {Modelling extracellular limitations for mediated versus direct interspecies electron transfer.},
author = {Storck T, Virdis B, Batstone DJ.},
journal = {ISME J},
year = {2016},
doi = {10.1038/ismej.2015.139},
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title = {Non-Standard Genetic Codes Define New Concepts for Protein Engineering.},
author = {Bezerra AR, Guimaraes AR, Santos MA.},
journal = {Life (Basel)},
year = {2015},
doi = {10.3390/life5041610},
pmid = {26569314}
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@article{lin390486,
title = {Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities.},
author = {Sanli K, Bengtsson-Palme J, Nilsson RH, Kristiansson E, Alm Rosenblad M, Blanck H, Eriksson KM.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.01192},
pmid = {26579098}
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@article{lin390155,
title = {Complete genome sequence of Methanospirillum hungatei type strain JF1.},
author = {Gunsalus RP, Cook LE, Crable B, Rohlin L, McDonald E, Mouttaki H, Sieber JR, Poweleit N, Zhou H, Lapidus AL, Daligault HE, Land M, Gilna P, Ivanova N, Kyrpides N, Culley DE, McInerney MJ.},
journal = {Stand Genomic Sci},
year = {2016},
doi = {10.1186/s40793-015-0124-8},
pmid = {26744606}
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title = {Methanogens rapidly transition from methane production to iron reduction.},
author = {Sivan O, Shusta SS, Valentine DL.},
journal = {Geobiology},
year = {2016},
doi = {10.1111/gbi.12172},
pmid = {26762691}
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@article{lin390527,
title = {Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process.},
author = {Koch S, Benndorf D, Fronk K, Reichl U, Klamt S.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0429-x},
pmid = {26807149}
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@article{lin390667,
title = {Biomethane potential of industrial paper wastes and investigation of the methanogenic communities involved.},
author = {Walter A, Silberberger S, Juarez MF, Insam H, Franke-Whittle IH.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0435-z},
pmid = {26819629}
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@article{lin390583,
title = {CO Metabolism in the Thermophilic Acetogen Thermoanaerobacter kivui.},
author = {Weghoff MC, Muller V.},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/aem.00122-16},
pmid = {26850300}
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@article{lin390548,
title = {pNEB193-derived suicide plasmids for gene deletion and protein expression in the methane-producing archaeon, Methanosarcina acetivorans.},
author = {Shea MT, Walter ME, Duszenko N, Ducluzeau AL, Aldridge J, King SK, Buan NR.},
journal = {Plasmid},
year = {2016},
doi = {10.1016/j.plasmid.2016.02.003},
pmid = {26876941}
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@article{lin390195,
title = {Complementary Microorganisms in Highly Corrosive Biofilms from an Offshore Oil Production Facility.},
author = {Vigneron A, Alsop EB, Chambers B, Lomans BP, Head IM, Tsesmetzis N.},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/aem.03842-15},
pmid = {26896143}
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@article{lin390577,
title = {Carbon Isotope Fractionation during Catabolism and Anabolism in Acetogenic Bacteria Growing on Different Substrates.},
author = {Freude C, Blaser M.},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/aem.03502-15},
pmid = {26921422}
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@article{lin390135,
title = {Incorporation of Amino Acids with Long-Chain Terminal Olefins into Proteins.},
author = {Exner MP, Kohling S, Rivollier J, Gosling S, Srivastava P, Palyancheva ZI, Herdewijn P, Heck MP, Rademann J, Budisa N.},
journal = {Molecules},
year = {2016},
doi = {10.3390/molecules21030287},
pmid = {26938510}
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@article{lin389987,
title = {Expanding the Diet for DIET: Electron Donors Supporting Direct Interspecies Electron Transfer (DIET) in Defined Co-Cultures.},
author = {Wang LY, Nevin KP, Woodard TL, Mu BZ, Lovley DR.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.00236},
pmid = {26973614}
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@article{lin390542,
title = {Recombinant thiopeptides containing noncanonical amino acids.},
author = {Luo X, Zambaldo C, Liu T, Zhang Y, Xuan W, Wang C, Reed SA, Yang PY, Wang RE, Javahishvili T, Schultz PG, Young TS.},
journal = {Proc Natl Acad Sci U S A},
year = {2016},
doi = {10.1073/pnas.1602733113},
pmid = {26976568}
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@article{lin390339,
title = {Site-specific Acetylation of Histone H3 Decreases Polymerase beta Activity on Nucleosome Core Particles in Vitro.},
author = {Rodriguez Y, Hinz JM, Laughery MF, Wyrick JJ, Smerdon MJ.},
journal = {J Biol Chem},
year = {2016},
doi = {10.1074/jbc.m116.725788},
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@article{lin389852,
title = {Physicochemical analysis of initial adhesion and biofilm formation of Methanosarcina barkeri on polymer support material.},
author = {Nguyen V, Karunakaran E, Collins G, Biggs CA.},
journal = {Colloids Surf B Biointerfaces},
year = {2016},
doi = {10.1016/j.colsurfb.2016.03.042},
pmid = {27038917}
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@article{lin390033,
title = {Identification of syntrophic acetate-oxidizing bacteria in anaerobic digesters by combined protein-based stable isotope probing and metagenomics.},
author = {Mosbaek F, Kjeldal H, Mulat DG, Albertsen M, Ward AJ, Feilberg A, Nielsen JL.},
journal = {ISME J},
year = {2016},
doi = {10.1038/ismej.2016.39},
pmid = {27128991}
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@article{lin390282,
title = {Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol.},
author = {Duin EC, Wagner T, Shima S, Prakash D, Cronin B, Yanez-Ruiz DR, Duval S, Rumbeli R, Stemmler RT, Thauer RK, Kindermann M.},
journal = {Proc Natl Acad Sci U S A},
year = {2016},
doi = {10.1073/pnas.1600298113},
pmid = {27140643}
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@article{lin390173,
title = {F420H2 Is Required for Phthiocerol Dimycocerosate Synthesis in Mycobacteria.},
author = {Purwantini E, Daniels L, Mukhopadhyay B.},
journal = {J Bacteriol},
year = {2016},
doi = {10.1128/jb.01035-15},
pmid = {27185825}
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@article{lin390106,
title = {Genetically Directed Production of Recombinant, Isosteric and Nonhydrolysable Ubiquitin Conjugates.},
author = {Stanley M, Virdee S.},
journal = {Chembiochem},
year = {2016},
doi = {10.1002/cbic.201600138},
pmid = {27197715}
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@article{lin390653,
title = {Selenite Reduction by Anaerobic Microbial Aggregates: Microbial Community Structure, and Proteins Associated to the Produced Selenium Spheres.},
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title = {Using genetically incorporated unnatural amino acids to control protein functions in mammalian cells.},
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title = {Genetically Encoded Protein Tyrosine Nitration in Mammalian Cells.},
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title = {Expanding the Zebrafish Genetic Code through Site-Specific Introduction of Azido-lysine, Bicyclononyne-lysine, and Diazirine-lysine.},
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title = {Effect of proximal ligand substitutions on the carbene and nitrene transferase activity of myoglobin.},
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title = {Augmenting Biogas Process Modeling by Resolving Intracellular Metabolic Activity.},
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title = {Kinetic modeling of Stickland reactions-coupled methanogenesis for a methanogenic culture.},
author = {Sangavai C, Bharathi M, Ganesh SP, Chellapandi P.},
journal = {AMB Express},
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title = {Light-activation of Cre recombinase in zebrafish embryos through genetic code expansion.},
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journal = {Methods Enzymol},
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title = {Microbial carbon use efficiency predicted from genome-scale metabolic models.},
author = {Saifuddin M, Bhatnagar JM, Segre D, Finzi AC.},
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title = {Distinct Modified Nucleosides in tRNATrp from the Hyperthermophilic Archaeon Thermococcus kodakarensis and Requirement of tRNA m2G10/m22G10 Methyltransferase (Archaeal Trm11) for Survival at High Temperatures.},
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journal = {J Bacteriol},
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title = {Engineering a Polyspecific Pyrrolysyl-tRNA Synthetase by a High Throughput FACS Screen.},
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title = {A new family of uncultivated bacteria involved in methanogenesis from the ubiquitous osmolyte glycine betaine in coastal saltmarsh sediments.},
author = {Jones HJ, Krober E, Stephenson J, Mausz MA, Jameson E, Millard A, Purdy KJ, Chen Y.},
journal = {Microbiome},
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title = {Pseudomonas spp. are key players in agricultural biogas substrate degradation.},
author = {Buettner C, von Bergen M, Jehmlich N, Noll M.},
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title = {Bioorthogonal protein-DNA conjugation methods for force spectroscopy.},
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title = {Metatranscriptomic Evidence for Magnetite Nanoparticle-Stimulated Acetoclastic Methanogenesis under Continuous Agitation.},
author = {Inaba R, Nagoya M, Kouzuma A, Watanabe K.},
journal = {Appl Environ Microbiol},
year = {2019},
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title = {X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.},
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title = {The streptothricin acetyltransferase (sat) gene as a positive selectable marker for methanogenic archaea.},
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title = {Energy-converting hydrogenases: the link between H2 metabolism and energy conservation.},
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journal = {Cell Mol Life Sci},
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title = {Site-specific acylation of a bacterial virulence regulator attenuates infection.},
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@article{lin390419,
title = {Examination of the Glycine Betaine-Dependent Methylotrophic Methanogenesis Pathway: Insights Into Anaerobic Quaternary Amine Methylotrophy.},
author = {Creighbaum AJ, Ticak T, Shinde S, Wang X, Ferguson DJ.},
journal = {Front Microbiol},
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@article{lin390267,
title = {Structure and function of an unusual flavodoxin from the domain Archaea.},
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title = {CRISPR-Cas3 induces broad and unidirectional genome editing in human cells.},
author = {Morisaka H, Yoshimi K, Okuzaki Y, Gee P, Kunihiro Y, Sonpho E, Xu H, Sasakawa N, Naito Y, Nakada S, Yamamoto T, Sano S, Hotta A, Takeda J, Mashimo T.},
journal = {Nat Commun},
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title = {Metabolic Modeling Elucidates the Transactions in the Rumen Microbiome and the Shifts Upon Virome Interactions.},
author = {Islam MM, Fernando SC, Saha R.},
journal = {Front Microbiol},
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doi = {10.3389/fmicb.2019.02412},
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title = {Energy conservation involving 2 respiratory circuits.},
author = {Schoelmerich MC, Katsyv A, Donig J, Hackmann TJ, Muller V.},
journal = {Proc Natl Acad Sci U S A},
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title = {Responses of Methanosarcina barkeri to acetate stress.},
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journal = {Biotechnol Biofuels},
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@article{lin389961,
title = {Methanogenic Archaea Can Produce Methane in Deliquescence-Driven Mars Analog Environments.},
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title = {A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index.},
author = {Barco RA, Garrity GM, Scott JJ, Amend JP, Nealson KH, Emerson D.},
journal = {mBio},
year = {2020},
doi = {10.1128/mbio.02475-19},
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@article{lin181478,
title = {Extracellular electron uptake in Methanosarcinales is independent of multiheme c-type cytochromes.},
author = {Yee MO, Rotaru AE.},
journal = {Sci Rep},
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title = {Chimeric Interaction of Nitrogenase-Like Reductases with the MoFe Protein of Nitrogenase.},
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journal = {Chembiochem},
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title = {Efficient Site-Specific Prokaryotic and Eukaryotic Incorporation of Halotyrosine Amino Acids into Proteins.},
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@article{lin389876,
title = {Direct Interspecies Electron Transfer Mediated by Graphene Oxide-Based Materials.},
author = {Igarashi K, Miyako E, Kato S.},
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title = {Site-Specific Protein Labeling with Fluorophores as a Tool To Monitor Protein Turnover.},
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@article{lin390200,
title = {Methanogenic response to long-term permafrost thaw is determined by paleoenvironment.},
author = {Holm S, Walz J, Horn F, Yang S, Grigoriev MN, Wagner D, Knoblauch C, Liebner S.},
journal = {FEMS Microbiol Ecol},
year = {2020},
doi = {10.1093/femsec/fiaa021},
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title = {Functional Group Distribution of the Carrier Surface Influences Adhesion of Methanothermobacter thermautotrophicus.},
author = {Umetsu M, Sunouchi T, Fukuda Y, Takahashi H, Tada C.},
journal = {Archaea},
year = {2020},
doi = {10.1155/2020/9432803},
pmid = {32047361}
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title = {Characterization of variations within the rumen metaproteome of Holstein dairy cattle relative to morning feed offering.},
author = {Honan MC, Greenwood SL.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-59974-5},
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title = {Functional interactions between posttranslationally modified amino acids of methyl-coenzyme M reductase in Methanosarcina acetivorans.},
author = {Nayak DD, Liu A, Agrawal N, Rodriguez-Carerro R, Dong SH, Mitchell DA, Nair SK, Metcalf WW.},
journal = {PLoS Biol},
year = {2020},
doi = {10.1371/journal.pbio.3000507},
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title = {pH and Phosphate Induced Shifts in Carbon Flow and Microbial Community during Thermophilic Anaerobic Digestion.},
author = {Lackner N, Wagner AO, Markt R, Illmer P.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8020286},
pmid = {32093251}
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title = {A methylated lysine is a switch point for conformational communication in the chaperone Hsp90.},
author = {Rehn A, Lawatscheck J, Jokisch ML, Mader SL, Luo Q, Tippel F, Blank B, Richter K, Lang K, Kaila VRI, Buchner J.},
journal = {Nat Commun},
year = {2020},
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title = {Fully Productive Cell-Free Genetic Code Expansion by Structure-Based Engineering of Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetase.},
author = {Seki E, Yanagisawa T, Kuratani M, Sakamoto K, Yokoyama S.},
journal = {ACS Synth Biol},
year = {2020},
doi = {10.1021/acssynbio.9b00288},
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title = {Adaptation of Methanosarcina barkeri 227 as acetate scavenger for succinate fermentation by Actinobacillus succinogenes.},
author = {Kim SN, Cho YB, Park JW, Kim OB.},
journal = {Appl Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s00253-020-10494-2},
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title = {It does not always take two to tango: "Syntrophy" via hydrogen cycling in one bacterial cell.},
author = {Wiechmann A, Ciurus S, Oswald F, Seiler VN, Muller V.},
journal = {ISME J},
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title = {Formate Utilization by the Crenarchaeon Desulfurococcus amylolyticus.},
author = {Ergal I, Reischl B, Hasibar B, Manoharan L, Zipperle A, Bochmann G, Fuchs W, Rittmann SKR.},
journal = {Microorganisms},
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title = {Expanding the genetic code of the human hematopoietic system.},
author = {Shao S, Koh M, Schultz PG.},
journal = {Proc Natl Acad Sci U S A},
year = {2020},
doi = {10.1073/pnas.1914408117},
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@article{lin181474,
title = {Effect of nickel, cobalt, and iron on methanogenesis from methanol and cometabolic conversion of 1,2-dichloroethene by Methanosarcina barkeri.},
author = {Paulo LM, Hidayat MR, Moretti G, Stams AJM, Sousa DZ.},
journal = {Biotechnol Appl Biochem},
year = {2020},
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title = {Identification of a novel archaea virus, detected in hydrocarbon polluted Hungarian and Canadian samples.},
author = {Molnar J, Magyar B, Schneider G, Laczi K, Valappil SK, Kovacs AL, Nagy IK, Rakhely G, Kovacs T.},
journal = {PLoS One},
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doi = {10.1371/journal.pone.0231864},
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title = {Linker and N-Terminal Domain Engineering of Pyrrolysyl-tRNA Synthetase for Substrate Range Shifting and Activity Enhancement.},
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journal = {Front Bioeng Biotechnol},
year = {2020},
doi = {10.3389/fbioe.2020.00235},
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@article{lin390265,
title = {Microbial Resource Management for Ex Situ Biomethanation of Hydrogen at Alkaline pH.},
author = {Logrono W, Popp D, Kleinsteuber S, Strauber H, Harms H, Nikolausz M.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8040614},
pmid = {32344539}
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@article{lin390077,
title = {Thermodynamic modelling of synthetic communities predicts minimum free energy requirements for sulfate reduction and methanogenesis.},
author = {Delattre H, Chen J, Wade MJ, Soyer OS.},
journal = {J R Soc Interface},
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doi = {10.1098/rsif.2020.0053},
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@article{lin390437,
title = {Optical control of MAP kinase kinase 6 (MKK6) reveals that it has divergent roles in pro-apoptotic and anti-proliferative signaling.},
author = {Rahman SMT, Zhou W, Deiters A, Haugh JM.},
journal = {J Biol Chem},
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@article{lin389800,
title = {Formation of Zerovalent Iron in Iron-Reducing Cultures of Methanosarcina barkeri.},
author = {Shang H, Daye M, Sivan O, Borlina CS, Tamura N, Weiss BP, Bosak T.},
journal = {Environ Sci Technol},
year = {2020},
doi = {10.1021/acs.est.0c01595},
pmid = {32379434}
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@article{lin390368,
title = {Electrophysiology of the Facultative Autotrophic Bacterium Desulfosporosinus orientis.},
author = {Agostino V, Lenic A, Bardl B, Rizzotto V, Phan ANT, Blank LM, Rosenbaum MA.},
journal = {Front Bioeng Biotechnol},
year = {2020},
doi = {10.3389/fbioe.2020.00457},
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@article{lin390125,
title = {Overcoming Near-Cognate Suppression in a Release Factor 1-Deficient Host with an Improved Nitro-Tyrosine tRNA Synthetase.},
author = {Beyer JN, Hosseinzadeh P, Gottfried-Lee I, Van Fossen EM, Zhu P, Bednar RM, Karplus PA, Mehl RA, Cooley RB.},
journal = {J Mol Biol},
year = {2020},
doi = {10.1016/j.jmb.2020.06.014},
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title = {Chimeric design of pyrrolysyl-tRNA synthetase/tRNA pairs and canonical synthetase/tRNA pairs for genetic code expansion.},
author = {Ding W, Zhao H, Chen Y, Zhang B, Yang Y, Zang J, Wu J, Lin S.},
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title = {Structural insight into the formation of lipoprotein-beta-barrel complexes.},
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journal = {Nat Chem Biol},
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doi = {10.1038/s41589-020-0575-0},
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@article{lin181480,
title = {Efficient Photoelectron Capture by Ni Decoration in Methanosarcina barkeri-CdS Biohybrids for Enhanced Photocatalytic CO2-to-CH4 Conversion.},
author = {Ye J, Ren G, Kang L, Zhang Y, Liu X, Zhou S, He Z.},
journal = {iScience},
year = {2020},
doi = {10.1016/j.isci.2020.101287},
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title = {Thermophilic Biogas Upgrading via ex Situ Addition of H2 and CO2 Using Codigested Feedstocks of Cow Manure and the Organic Fraction of Solid Municipal Waste.},
author = {Sekoai PT, Engelbrecht N, du Preez SP, Bessarabov D.},
journal = {ACS Omega},
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doi = {10.1021/acsomega.0c01725},
pmid = {32715221}
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@article{lin390414,
title = {An evolutionary approach to systematic discovery of novel deubiquitinases, applied to Legionella.},
author = {Hermanns T, Woiwode I, Guerreiro RF, Vogt R, Lammers M, Hofmann K.},
journal = {Life Sci Alliance},
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doi = {10.26508/lsa.202000838},
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title = {Investigating the biological potential of galactic cosmic ray-induced radiation-driven chemical disequilibrium in the Martian subsurface environment.},
author = {Atri D.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-68715-7},
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title = {Methanobacterium formicicum as a target rumen methanogen for the development of new methane mitigation interventions: A review.},
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@article{lin389796,
title = {Substrate-dependent incorporation of carbon and hydrogen for lipid biosynthesis by Methanosarcina barkeri.},
author = {Wu W, Meador TB, Konneke M, Elvert M, Wegener G, Hinrichs KU.},
journal = {Environ Microbiol Rep},
year = {2020},
doi = {10.1111/1758-2229.12876},
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@article{lin390489,
title = {Emerging Methods for Efficient and Extensive Incorporation of Non-canonical Amino Acids Using Cell-Free Systems.},
author = {Wu Y, Wang Z, Qiao X, Li J, Shu X, Qi H.},
journal = {Front Bioeng Biotechnol},
year = {2020},
doi = {10.3389/fbioe.2020.00863},
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@article{lin390246,
title = {Exploiting Biological Nitrogen Fixation: A Route Towards a Sustainable Agriculture.},
author = {Soumare A, Diedhiou AG, Thuita M, Hafidi M, Ouhdouch Y, Gopalakrishnan S, Kouisni L.},
journal = {Plants (Basel)},
year = {2020},
doi = {10.3390/plants9081011},
pmid = {32796519}
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@article{lin390261,
title = {Systematic Analysis of Escherichia coli Isolates from Sheep and Cattle Suggests Adaption to the Rumen Niche.},
author = {Pang J, Liu Z, Zhang Q, Lu X, Qi Q.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.01417-20},
pmid = {32801187}
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@article{lin181476,
title = {The hydrogen threshold of obligately methyl-reducing methanogens.},
author = {Feldewert C, Lang K, Brune A.},
journal = {FEMS Microbiol Lett},
year = {2020},
doi = {10.1093/femsle/fnaa137},
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@article{lin390178,
title = {Metabolomics Comparison of Hanwoo (Bos taurus coreanae) Biofluids Using Proton Nuclear Magnetic Resonance Spectroscopy.},
author = {Eom JS, Lee SJ, Kim HS, Choi YY, Kim SH, Lee YG, Lee SS.},
journal = {Metabolites},
year = {2020},
doi = {10.3390/metabo10080333},
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@article{lin389798,
title = {Kinetic and substrate complex characterization of RamA, a corrinoid protein reductive activase from Methanosarcina barkeri.},
author = {Huening KA, Jiang R, Krzycki JA.},
journal = {FEMS Microbiol Lett},
year = {2020},
doi = {10.1093/femsle/fnaa128},
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@article{lin390239,
title = {Effect of Sub-Stoichiometric Fe(III) Amounts on LCFA Degradation by Methanogenic Communities.},
author = {Cavaleiro AJ, Guedes AP, Silva SA, Arantes AL, Sequeira JC, Salvador AF, Sousa DZ, Stams AJM, Alves MM.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8091375},
pmid = {32906848}
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@article{lin390201,
title = {Genetically Encoded Quinone Methides Enabling Rapid, Site-Specific, and Photocontrolled Protein Modification with Amine Reagents.},
author = {Liu J, Cheng R, Van Eps N, Wang N, Morizumi T, Ou WL, Klauser PC, Rozovsky S, Ernst OP, Wang L.},
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doi = {10.1021/jacs.0c06820},
pmid = {32915556}
}
@article{lin390101,
title = {Possible involvement of NMDA receptor in the anxiolytic-like effect of caffeic acid in mice model of maternal separation stress.},
author = {Lorigooini Z, Nasiri Boroujeni S, Balali-Dehkordi S, Ebrahimi L, Bijad E, Rahimi-Madiseh M, Amini-Khoei H.},
journal = {Heliyon},
year = {2020},
doi = {10.1016/j.heliyon.2020.e04833},
pmid = {32944669}
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@article{lin390054,
title = {Genetic code expansion in mammalian cells: A plasmid system comparison.},
author = {Zhou W, Wesalo JS, Liu J, Deiters A.},
journal = {Bioorg Med Chem},
year = {2020},
doi = {10.1016/j.bmc.2020.115772},
pmid = {33069552}
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@article{lin389910,
title = {Unveiling the Biodiversity of Hyperthermophilic Archaea in Jharia Coal Mines: Potential Threat to Methanogenesis?},
author = {Jha P, Singh J, Vidyarthi AS, Prasad R.},
journal = {Curr Genomics},
year = {2020},
doi = {10.2174/1389202921999200605151722},
pmid = {33093799}
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@article{lin390389,
title = {Methanosarcina acetivorans contains a functional ISC system for iron-sulfur cluster biogenesis.},
author = {Deere TM, Prakash D, Lessner FH, Duin EC, Lessner DJ.},
journal = {BMC Microbiol},
year = {2020},
doi = {10.1186/s12866-020-02014-z},
pmid = {33096982}
}
@article{lin389962,
title = {An Expanded Genetic Code Enables Trimethylamine Metabolism in Human Gut Bacteria.},
author = {Kivenson V, Giovannoni SJ.},
journal = {mSystems},
year = {2020},
doi = {10.1128/msystems.00413-20},
pmid = {33109749}
}
@article{lin390397,
title = {Sulfate Alters the Competition Among Microbiome Members of Sediments Chronically Exposed to Asphalt.},
author = {Michas A, Harir M, Lucio M, Vestergaard G, Himmelberg A, Schmitt-Kopplin P, Lueders T, Hatzinikolaou DG, Scholer A, Rabus R, Schloter M.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.556793},
pmid = {33133031}
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@article{lin389895,
title = {Influence of Liquid-to-Gas Ratio on the Syngas Fermentation Efficiency: An Experimental Approach.},
author = {Achinas S, Mulder SJ, Euverink GJW.},
journal = {Bioengineering (Basel)},
year = {2020},
doi = {10.3390/bioengineering7040138},
pmid = {33142703}
}
@article{lin389976,
title = {Pretreatments of Broussonetia papyrifera: in vitro assessment on gas and methane production, fermentation characteristic, and methanogenic archaea profile.},
author = {Dong L, Gao Y, Jing X, Guo H, Zhang H, Lai Q, Diao Q.},
journal = {Anim Biosci},
year = {2022},
doi = {10.5713/ajas.20.0503},
pmid = {33171029}
}
@article{lin390344,
title = {Branched Ubiquitination: Detection Methods, Biological Functions and Chemical Synthesis.},
author = {Wang YS, Wu KP, Jiang HK, Kurkute P, Chen RH.},
journal = {Molecules},
year = {2020},
doi = {10.3390/molecules25215200},
pmid = {33182242}
}
@article{lin390160,
title = {Catabolic Machinery of the Human Gut Microbes Bestow Resilience Against Vanillin Antimicrobial Nature.},
author = {Yadav M, Pandey R, Chauhan NS.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.588545},
pmid = {33193247}
}
@article{lin389885,
title = {Dual RNase and beta-lactamase Activity of a Single Enzyme Encoded in Archaea.},
author = {Diene SM, Pinault L, Armstrong N, Azza S, Keshri V, Khelaifia S, Chabriere E, Caetano-Anolles G, Rolain JM, Pontarotti P, Raoult D.},
journal = {Life (Basel)},
year = {2020},
doi = {10.3390/life10110280},
pmid = {33202677}
}
@article{lin390375,
title = {Photosensitive tyrosine analogues unravel site-dependent phosphorylation in TrkA initiated MAPK/ERK signaling.},
author = {Zhao S, Shi J, Yu G, Li D, Wang M, Yuan C, Zhou H, Parizadeh A, Li Z, Guan MX, Ye S.},
journal = {Commun Biol},
year = {2020},
doi = {10.1038/s42003-020-01396-0},
pmid = {33239753}
}
@article{lin390143,
title = {Advances and Applications of Clostridium Co-culture Systems in Biotechnology.},
author = {Du Y, Zou W, Zhang K, Ye G, Yang J, Yang J.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.560223},
pmid = {33312166}
}
@article{lin389911,
title = {Transferability of N-terminal mutations of pyrrolysyl-tRNA synthetase in one species to that in another species on unnatural amino acid incorporation efficiency.},
author = {Williams TL, Iskandar DJ, Nodling AR, Tan Y, Luk LYP, Tsai YH.},
journal = {Amino Acids},
year = {2021},
doi = {10.1007/s00726-020-02927-z},
pmid = {33331978}
}
@article{lin390070,
title = {Isolation and characterization of fast-growing green snow bacteria from coastal East Antarctica.},
author = {Smirnova M, Miamin U, Kohler A, Valentovich L, Akhremchuk A, Sidarenka A, Dolgikh A, Shapaval V.},
journal = {Microbiologyopen},
year = {2021},
doi = {10.1002/mbo3.1152},
pmid = {33377317}
}
@article{lin390300,
title = {Diversity analysis of thermophilic hydrogenogenic carboxydotrophs by carbon monoxide dehydrogenase amplicon sequencing using new primers.},
author = {Omae K, Oguro T, Inoue M, Fukuyama Y, Yoshida T, Sako Y.},
journal = {Extremophiles},
year = {2021},
doi = {10.1007/s00792-020-01211-y},
pmid = {33415441}
}
@article{lin390304,
title = {A Comprehensive Analysis of cis-Acting RNA Elements in the SARS-CoV-2 Genome by a Bioinformatics Approach.},
author = {Ahmed F, Sharma M, Al-Ghamdi AA, Al-Yami SM, Al-Salami AM, Refai MY, Warsi MK, Howladar SM, Baeshen MN.},
journal = {Front Genet},
year = {2020},
doi = {10.3389/fgene.2020.572702},
pmid = {33424918}
}
@article{lin389863,
title = {Anaerobic Production of Isoprene by Engineered Methanosarcina Species Archaea.},
author = {Aldridge J, Carr S, Weber KA, Buan NR.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.02417-20},
pmid = {33452028}
}
@article{lin390280,
title = {TK1211 Encodes an Amino Acid Racemase towards Leucine and Methionine in the Hyperthermophilic Archaeon Thermococcus kodakarensis.},
author = {Zheng RC, Lu XF, Tomita H, Hachisuka SI, Zheng YG, Atomi H.},
journal = {J Bacteriol},
year = {2021},
doi = {10.1128/jb.00617-20},
pmid = {33468590}
}
@article{lin390142,
title = {A short ORF-encoded transcriptional regulator.},
author = {Koh M, Ahmad I, Ko Y, Zhang Y, Martinez TF, Diedrich JK, Chu Q, Moresco JJ, Erb MA, Saghatelian A, Schultz PG, Bollong MJ.},
journal = {Proc Natl Acad Sci U S A},
year = {2021},
doi = {10.1073/pnas.2021943118},
pmid = {33468658}
}
@article{lin389869,
title = {Directed Evolution of the Methanosarcina barkeri Pyrrolysyl tRNA/aminoacyl tRNA Synthetase Pair for Rapid Evaluation of Sense Codon Reassignment Potential.},
author = {Schwark DG, Schmitt MA, Fisk JD.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22020895},
pmid = {33477414}
}
@article{lin390338,
title = {Glucose Metabolism and Acetate Switch in Archaea: the Enzymes in Haloferax volcanii.},
author = {Kuprat T, Ortjohann M, Johnsen U, Schonheit P.},
journal = {J Bacteriol},
year = {2021},
doi = {10.1128/jb.00690-20},
pmid = {33558390}
}
@article{lin389896,
title = {Effective methane production from the Japanese weed Gyougi-shiba (Cynodon dactylon) is accomplished by colocalization of microbial communities that assimilate water-soluble and -insoluble fractions.},
author = {Matsuda S, Ohtsuki T.},
journal = {FEMS Microbiol Lett},
year = {2021},
doi = {10.1093/femsle/fnab015},
pmid = {33587116}
}
@article{lin390348,
title = {Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts - A Genome-Centric Analysis.},
author = {Loh HQ, Herve V, Brune A.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.635786},
pmid = {33613473}
}
@article{lin390055,
title = {gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models.},
author = {Zimmermann J, Kaleta C, Waschina S.},
journal = {Genome Biol},
year = {2021},
doi = {10.1186/s13059-021-02295-1},
pmid = {33691770}
}
@article{lin390071,
title = {Exploring Structure and Function of Redox Intermediates in [NiFe]-Hydrogenases by an Advanced Experimental Approach for Solvated, Lyophilized and Crystallized Metalloenzymes.},
author = {Lorent C, Pelmenschikov V, Frielingsdorf S, Schoknecht J, Caserta G, Yoda Y, Wang H, Tamasaku K, Lenz O, Cramer SP, Horch M, Lauterbach L, Zebger I.},
journal = {Angew Chem Int Ed Engl},
year = {2021},
doi = {10.1002/anie.202100451},
pmid = {33783938}
}
@article{lin389879,
title = {Putative Extracellular Electron Transfer in Methanogenic Archaea.},
author = {Gao K, Lu Y.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.611739},
pmid = {33828536}
}
@article{lin390061,
title = {Genetic Encoding and Enzymatic Deprotection of a Latent Thiol Side Chain to Enable New Protein Bioconjugation Applications.},
author = {Reille-Seroussi M, Meyer-Ahrens P, Aust A, Feldberg AL, Mootz HD.},
journal = {Angew Chem Int Ed Engl},
year = {2021},
doi = {10.1002/anie.202102343},
pmid = {33844389}
}
@article{lin390475,
title = {An insight into the bioelectrochemical photoreduction of CO2 to value-added chemicals.},
author = {Gupta P, Noori MT, Nunez AE, Verma N.},
journal = {iScience},
year = {2021},
doi = {10.1016/j.isci.2021.102294},
pmid = {33851103}
}
@article{lin389804,
title = {Potential Role of Methanogens in Microbial Reductive Dechlorination of Organic Chlorinated Pollutants In Situ.},
author = {Yuan J, Li S, Cheng J, Guo C, Shen C, He J, Yang Y, Hu P, Xu J, He Y.},
journal = {Environ Sci Technol},
year = {2021},
doi = {10.1021/acs.est.0c08631},
pmid = {33856788}
}
@article{lin390220,
title = {An alternative resource allocation strategy in the chemolithoautotrophic archaeon Methanococcus maripaludis.},
author = {Muller AL, Gu W, Patsalo V, Deutzmann JS, Williamson JR, Spormann AM.},
journal = {Proc Natl Acad Sci U S A},
year = {2021},
doi = {10.1073/pnas.2025854118},
pmid = {33879571}
}
@article{lin389888,
title = {Structural Insights into the Methane-Generating Enzyme from a Methoxydotrophic Methanogen Reveal a Restrained Gallery of Post-Translational Modifications.},
author = {Kurth JM, Muller MC, Welte CU, Wagner T.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9040837},
pmid = {33919946}
}
@article{lin181555,
title = {Correlation of Key Physiological Properties of Methanosarcina Isolates with Environment of Origin.},
author = {Zhou J, Holmes DE, Tang HY, Lovley DR.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.00731-21},
pmid = {33931421}
}
@article{lin390140,
title = {Translational accuracy of a tethered ribosome.},
author = {Fabret C, Namy O.},
journal = {Nucleic Acids Res},
year = {2021},
doi = {10.1093/nar/gkab259},
pmid = {33950196}
}
@article{lin389968,
title = {Adenylyl Cyclase (AC) Mediates the Antidepressant-Like Effects of Tropisetron on a Mouse Model of Maternal Separation Stress.},
author = {Hosseinzadeh A, Boroujeni SN, Saghaei E, Loriooini Z, Dehkordi SH, Balali-Dehkordi S, Rahimi-Madiseh M, Amini-Khoei H.},
journal = {Depress Res Treat},
year = {2021},
doi = {10.1155/2021/5586119},
pmid = {33976935}
}
@article{lin181477,
title = {Data on the optimization of an archaea-specific probe-based qPCR assay.},
author = {Bomberg M, Miettinen H.},
journal = {Data Brief},
year = {2020},
doi = {10.1016/j.dib.2020.106610},
pmid = {34026962}
}
@article{lin390205,
title = {Combined Stochastic and Deterministic Processes Drive Community Assembly of Anaerobic Microbiomes During Granule Flotation.},
author = {Trego AC, McAteer PG, Nzeteu C, Mahony T, Abram F, Ijaz UZ, O'Flaherty V.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.666584},
pmid = {34054772}
}
@article{lin390599,
title = {Site-specific ubiquitylation acts as a regulator of linker histone H1.},
author = {Hollmuller E, Geigges S, Niedermeier ML, Kammer KM, Kienle SM, Rosner D, Scheffner M, Marx A, Stengel F.},
journal = {Nat Commun},
year = {2021},
doi = {10.1038/s41467-021-23636-5},
pmid = {34108453}
}
@article{lin389851,
title = {Transcriptional response to prolonged perchlorate exposure in the methanogen Methanosarcina barkeri and implications for Martian habitability.},
author = {Harris RL, Schuerger AC, Wang W, Tamama Y, Garvin ZK, Onstott TC.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-91882-0},
pmid = {34117335}
}
@article{lin390035,
title = {Methanogenic archaea use a bacteria-like methyltransferase system to demethoxylate aromatic compounds.},
author = {Kurth JM, Nobu MK, Tamaki H, de Jonge N, Berger S, Jetten MSM, Yamamoto K, Mayumi D, Sakata S, Bai L, Cheng L, Nielsen JL, Kamagata Y, Wagner T, Welte CU.},
journal = {ISME J},
year = {2021},
doi = {10.1038/s41396-021-01025-6},
pmid = {34145392}
}
@article{lin390249,
title = {Iron and sulfate reduction structure microbial communities in (sub-)Antarctic sediments.},
author = {Wunder LC, Aromokeye DA, Yin X, Richter-Heitmann T, Willis-Poratti G, Schnakenberg A, Otersen C, Dohrmann I, Romer M, Bohrmann G, Kasten S, Friedrich MW.},
journal = {ISME J},
year = {2021},
doi = {10.1038/s41396-021-01014-9},
pmid = {34155335}
}
@article{lin389939,
title = {The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis.},
author = {Fujishiro T, Ogawa S.},
journal = {Chem Sci},
year = {2021},
doi = {10.1039/d0sc05439a},
pmid = {34163982}
}
@article{lin390315,
title = {Dose-Response Effects of 3-Nitrooxypropanol Combined with Low- and High-Concentrate Feed Proportions in the Dairy Cow Ration on Fermentation Parameters in a Rumen Simulation Technique.},
author = {Schilde M, von Soosten D, Huther L, Kersten S, Meyer U, Zeyner A, Danicke S.},
journal = {Animals (Basel)},
year = {2021},
doi = {10.3390/ani11061784},
pmid = {34203718}
}
@article{lin390363,
title = {Early response of methanogenic archaea to H2 as evaluated by metagenomics and metatranscriptomics.},
author = {Kakuk B, Wirth R, Maroti G, Szuhaj M, Rakhely G, Laczi K, Kovacs KL, Bagi Z.},
journal = {Microb Cell Fact},
year = {2021},
doi = {10.1186/s12934-021-01618-y},
pmid = {34217274}
}
@article{lin390463,
title = {Examining Pathways of Iron and Sulfur Acquisition, Trafficking, Deployment, and Storage in Mineral-Grown Methanogen Cells.},
author = {Payne D, Shepard EM, Spietz RL, Steward K, Brumfield S, Young M, Bothner B, Broderick WE, Broderick JB, Boyd ES.},
journal = {J Bacteriol},
year = {2021},
doi = {10.1128/jb.00146-21},
pmid = {34251867}
}
@article{lin181475,
title = {Light-driven carbon dioxide reduction to methane by Methanosarcina barkeri in an electric syntrophic coculture.},
author = {Huang L, Liu X, Zhang Z, Ye J, Rensing C, Zhou S, Nealson KH.},
journal = {ISME J},
year = {2022},
doi = {10.1038/s41396-021-01078-7},
pmid = {34341507}
}
@article{lin390004,
title = {Diverse protein manipulations with genetically encoded glutamic acid benzyl ester.},
author = {Yang X, Miao H, Xiao R, Wang L, Zhao Y, Wu Q, Ji Y, Du J, Qin H, Xuan W.},
journal = {Chem Sci},
year = {2021},
doi = {10.1039/d1sc01882e},
pmid = {34349951}
}
@article{lin390471,
title = {Comparison of enteric methane yield and diversity of ruminal methanogens in cattle and buffaloes fed on the same diet.},
author = {Malik PK, Trivedi S, Mohapatra A, Kolte AP, Sejian V, Bhatta R, Rahman H.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0256048},
pmid = {34379691}
}
@article{lin389937,
title = {FISH-TAMB, a Fixation-Free mRNA Fluorescent Labeling Technique to Target Transcriptionally Active Members in Microbial Communities.},
author = {Harris RL, Vetter MCYL, van Heerden E, Cason E, Vermeulen JG, Taneja A, Kieft TL, DeCoste CJ, Laevsky GS, Onstott TC.},
journal = {Microb Ecol},
year = {2022},
doi = {10.1007/s00248-021-01809-5},
pmid = {34406445}
}
@article{lin390398,
title = {Non-canonical Amino Acid Substrates of E. coli Aminoacyl-tRNA Synthetases.},
author = {Hartman MCT.},
journal = {Chembiochem},
year = {2022},
doi = {10.1002/cbic.202100299},
pmid = {34416067}
}
@article{lin390180,
title = {Response of Methanogen Communities to the Elevation of Cathode Potentials in Bioelectrochemical Reactors Amended with Magnetite.},
author = {Gao K, Wang X, Huang J, Xia X, Lu Y.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.01488-21},
pmid = {34432490}
}
@article{lin390400,
title = {Designing efficient genetic code expansion in Bacillus subtilis to gain biological insights.},
author = {Stork DA, Squyres GR, Kuru E, Gromek KA, Rittichier J, Jog A, Burton BM, Church GM, Garner EC, Kunjapur AM.},
journal = {Nat Commun},
year = {2021},
doi = {10.1038/s41467-021-25691-4},
pmid = {34521822}
}
@article{lin389799,
title = {Microbial adaptation and response to high ammonia concentrations and precipitates during anaerobic digestion under psychrophilic and mesophilic conditions.},
author = {Quispe-Cardenas E, Rogers S.},
journal = {Water Res},
year = {2021},
doi = {10.1016/j.watres.2021.117596},
pmid = {34530226}
}
@article{lin390014,
title = {An Unnatural Amino Acid-Regulated Growth Controller Based on Informational Disturbance.},
author = {Kato Y.},
journal = {Life (Basel)},
year = {2021},
doi = {10.3390/life11090920},
pmid = {34575069}
}
@article{lin390138,
title = {Diversity and Metabolic Potential of the Terrestrial Mud Volcano Microbial Community with a High Abundance of Archaea Mediating the Anaerobic Oxidation of Methane.},
author = {Merkel AY, Chernyh NA, Pimenov NV, Bonch-Osmolovskaya EA, Slobodkin AI.},
journal = {Life (Basel)},
year = {2021},
doi = {10.3390/life11090953},
pmid = {34575103}
}
@article{lin390110,
title = {Pathogen Metagenomics Reveals Distinct Lung Microbiota Signatures Between Bacteriologically Confirmed and Negative Tuberculosis Patients.},
author = {Ding L, Liu Y, Wu X, Wu M, Luo X, Ouyang H, Xia J, Liu X, Ding T.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.708827},
pmid = {34589441}
}
@article{lin390065,
title = {Genetic Incorporation of Two Mutually Orthogonal Bioorthogonal Amino Acids That Enable Efficient Protein Dual-Labeling in Cells.},
author = {Bednar RM, Jana S, Kuppa S, Franklin R, Beckman J, Antony E, Cooley RB, Mehl RA.},
journal = {ACS Chem Biol},
year = {2021},
doi = {10.1021/acschembio.1c00649},
pmid = {34590824}
}
@article{lin390390,
title = {Mechanisms for Electron Uptake by Methanosarcina acetivorans during Direct Interspecies Electron Transfer.},
author = {Holmes DE, Zhou J, Ueki T, Woodard T, Lovley DR.},
journal = {mBio},
year = {2021},
doi = {10.1128/mbio.02344-21},
pmid = {34607451}
}
@article{lin390105,
title = {Microbiome signature and diversity regulates the level of energy production under anaerobic condition.},
author = {Rahman MS, Hoque MN, Puspo JA, Islam MR, Das N, Siddique MA, Hossain MA, Sultana M.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-99104-3},
pmid = {34611238}
}
@article{lin390385,
title = {The MttB superfamily member MtyB from the human gut symbiont Eubacterium limosum is a cobalamin-dependent gamma-butyrobetaine methyltransferase.},
author = {Ellenbogen JB, Jiang R, Kountz DJ, Zhang L, Krzycki JA.},
journal = {J Biol Chem},
year = {2021},
doi = {10.1016/j.jbc.2021.101327},
pmid = {34688665}
}
@article{lin390048,
title = {Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane.},
author = {McKay LJ, Smith HJ, Barnhart EP, Schweitzer HD, Malmstrom RR, Goudeau D, Fields MW.},
journal = {ISME J},
year = {2022},
doi = {10.1038/s41396-021-01139-x},
pmid = {34689183}
}
@article{lin389950,
title = {Global connectivity in genome-scale metabolic networks revealed by comprehensive FBA-based pathway analysis.},
author = {Gao Y, Yuan Q, Mao Z, Liu H, Ma H.},
journal = {BMC Microbiol},
year = {2021},
doi = {10.1186/s12866-021-02357-1},
pmid = {34696732}
}
@article{lin390090,
title = {Biogenic formation of amorphous carbon by anaerobic methanotrophs and select methanogens.},
author = {Allen KD, Wegener G, Matthew Sublett D, Bodnar RJ, Feng X, Wendt J, White RH.},
journal = {Sci Adv},
year = {2021},
doi = {10.1126/sciadv.abg9739},
pmid = {34705502}
}
@article{lin390217,
title = {Improved production of the non-native cofactor F420 in Escherichia coli.},
author = {Shah MV, Nazem-Bokaee H, Antoney J, Kang SW, Jackson CJ, Scott C.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-01224-3},
pmid = {34741069}
}
@article{lin390117,
title = {Visualizing an Allosteric Intermediate Using CuAAC Stabilization of an NMR Mixed Labeled Dimer.},
author = {Sapienza PJ, Currie MM, Lancaster NM, Li K, Aube J, Goldfarb D, Cloer EW, Major MB, Lee AL.},
journal = {ACS Chem Biol},
year = {2021},
doi = {10.1021/acschembio.1c00617},
pmid = {34784173}
}
@article{lin390066,
title = {A Novel Archaeal Lineage in Boiling Hot Springs around Oyasukyo Gorge (Akita, Japan).},
author = {Asamatsu K, Yoshitake K, Saito M, Prasitwuttisak W, Ishibashi JI, Tsutsumi A, Mustapha NA, Maeda T, Yanagawa K.},
journal = {Microbes Environ},
year = {2021},
doi = {10.1264/jsme2.me21048},
pmid = {34819404}
}
@article{lin390097,
title = {Does Addition of Phosphate and Ammonium Nutrients Affect Microbial Activity in Froth Treatment Affected Tailings?},
author = {Ramsay JA, de Lima E Silva MR, Tawadrous MAR, Ramsay BA.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9112224},
pmid = {34835351}
}
@article{lin389785,
title = {Influence of oxygen on the vinyl acetate elimination pathway and microbial community structure of methanogenic sludge.},
author = {Duran U, Monroy O, Gomez J, Ramirez F.},
journal = {Water Environ Res},
year = {2022},
doi = {10.1002/wer.1666},
pmid = {34837253}
}
@article{lin390016,
title = {Substrate Profiling of Mitochondrial Caseinolytic Protease P via a Site-Specific Photocrosslinking Approach.},
author = {Nguyen TA, Gronauer TF, Nast-Kolb T, Sieber SA, Lang K.},
journal = {Angew Chem Int Ed Engl},
year = {2022},
doi = {10.1002/anie.202111085},
pmid = {34847623}
}
@article{lin390426,
title = {Ferritin Conjugates With Multiple Clickable Amino Acids Encoded by C-Terminal Engineered Pyrrolysyl-tRNA Synthetase.},
author = {Wang YH, Jian ML, Chen PJ, Tsou JC, Truong LP, Wang YS.},
journal = {Front Chem},
year = {2021},
doi = {10.3389/fchem.2021.779976},
pmid = {34900939}
}
@article{lin390255,
title = {LigD: A Structural Guide to the Multi-Tool of Bacterial Non-Homologous End Joining.},
author = {Amare B, Mo A, Khan N, Sowa DJ, Warner MM, Tetenych A, Andres SN.},
journal = {Front Mol Biosci},
year = {2021},
doi = {10.3389/fmolb.2021.787709},
pmid = {34901162}
}
@article{lin390422,
title = {Biofilm Biology and Engineering of Geobacter and Shewanella spp. for Energy Applications.},
author = {Hu Y, Wang Y, Han X, Shan Y, Li F, Shi L.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.786416},
pmid = {34926431}
}
@article{lin390639,
title = {Towards a generic prototyping approach for therapeutically-relevant peptides and proteins in a cell-free translation system.},
author = {Wu Y, Cui Z, Huang YH, de Veer SJ, Aralov AV, Guo Z, Moradi SV, Hinton AO, Deuis JR, Guo S, Chen KE, Collins BM, Vetter I, Herzig V, Jones A, Cooper MA, King GF, Craik DJ, Alexandrov K, Mureev S.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-021-27854-9},
pmid = {35017494}
}
@article{lin390346,
title = {Synthetic riboswitches for the analysis of tRNA processing by eukaryotic RNase P enzymes.},
author = {Ender A, Grafl N, Kolberg T, Findeiss S, Stadler PF, Morl M.},
journal = {RNA},
year = {2022},
doi = {10.1261/rna.078814.121},
pmid = {35022261}
}
@article{lin390015,
title = {Biome-specific distribution of Ni-containing carbon monoxide dehydrogenases.},
author = {Inoue M, Omae K, Nakamoto I, Kamikawa R, Yoshida T, Sako Y.},
journal = {Extremophiles},
year = {2022},
doi = {10.1007/s00792-022-01259-y},
pmid = {35059858}
}
@article{lin390067,
title = {Efficient Amber Suppression via Ribosomal Skipping for In Situ Synthesis of Photoconditional Nanobodies.},
author = {Joest EF, Winter C, Wesalo JS, Deiters A, Tampe R.},
journal = {ACS Synth Biol},
year = {2022},
doi = {10.1021/acssynbio.1c00471},
pmid = {35060375}
}
@article{lin390107,
title = {Synergistic Effects of 3-Nitrooxypropanol with Fumarate in the Regulation of Propionate Formation and Methanogenesis in Dairy Cows In Vitro.},
author = {Liu Z, Wang K, Nan X, Cai M, Yang L, Xiong B, Zhao Y.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.01908-21},
pmid = {35080908}
}
@article{lin390293,
title = {Amino Acid Specificity of Ancestral Aminoacyl-tRNA Synthetase Prior to the Last Universal Common Ancestor Commonote commonote.},
author = {Furukawa R, Yokobori SI, Sato R, Kumagawa T, Nakagawa M, Katoh K, Yamagishi A.},
journal = {J Mol Evol},
year = {2022},
doi = {10.1007/s00239-021-10043-z},
pmid = {35084522}
}
@article{lin390131,
title = {Biochemical Properties of Black and Green Teas and Their Insoluble Residues as Natural Dietary Additives to Optimize In Vitro Rumen Degradability and Fermentation but Reduce Methane in Sheep.},
author = {Ramdani D, Jayanegara A, Chaudhry AS.},
journal = {Animals (Basel)},
year = {2022},
doi = {10.3390/ani12030305},
pmid = {35158629}
}
@article{lin390011,
title = {Novel Methanobacterium Strain Induces Severe Corrosion by Retrieving Electrons from Fe0 under a Freshwater Environment.},
author = {Hirano SI, Ihara S, Wakai S, Dotsuta Y, Otani K, Kitagaki T, Ueno F, Okamoto A.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10020270},
pmid = {35208725}
}
@article{lin181486,
title = {Physiological Effects of 2-Bromoethanesulfonate on Hydrogenotrophic Pure and Mixed Cultures.},
author = {Logrono W, Nikolausz M, Harms H, Kleinsteuber S.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10020355},
pmid = {35208809}
}
@article{lin390188,
title = {In-Silico Detection of Oral Prokaryotic Species With Highly Similar 16S rRNA Sequence Segments Using Different Primer Pairs.},
author = {Regueira-Iglesias A, Vazquez-Gonzalez L, Balsa-Castro C, Blanco-Pintos T, Martin-Biedma B, Arce VM, Carreira MJ, Tomas I.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.770668},
pmid = {35223533}
}
@article{lin390183,
title = {Soil Properties Interacting With Microbial Metagenome in Decreasing CH4 Emission From Seasonally Flooded Marshland Following Different Stages of Afforestation.},
author = {Zhang Q, Tang J, Angel R, Wang D, Hu X, Gao S, Zhang L, Tang Y, Zhang X, Koide RT, Yang H, Sun Q.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.830019},
pmid = {35283824}
}
@article{lin390202,
title = {Efficient Unnatural Protein Production by Pyrrolysyl-tRNA Synthetase With Genetically Fused Solubility Tags.},
author = {Koch NG, Baumann T, Budisa N.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.807438},
pmid = {35284428}
}
@article{lin389794,
title = {Self-replicating Biophotoelectrochemistry System for Sustainable CO Methanation.},
author = {Wang C, Yu J, Ren G, Hu A, Liu X, Chen Y, Ye J, Zhou S, He Z.},
journal = {Environ Sci Technol},
year = {2022},
doi = {10.1021/acs.est.1c08340},
pmid = {35290037}
}
@article{lin389793,
title = {Impacts of combined water-saving irrigation and controlled-release urea on CH4 emission and its associated microbial communities and function.},
author = {Ma C, Wu J, Li F.},
journal = {Sci Total Environ},
year = {2022},
doi = {10.1016/j.scitotenv.2022.154724},
pmid = {35331759}
}
@article{lin389985,
title = {Generation of Premature Termination Codon (PTC)-Harboring Pseudorabies Virus (PRV) via Genetic Code Expansion Technology.},
author = {Wang TY, Sang GJ, Wang Q, Leng CL, Tian ZJ, Peng JM, Wang SJ, Sun MX, Meng FD, Zheng H, Cai XH, Tang YD.},
journal = {Viruses},
year = {2022},
doi = {10.3390/v14030572},
pmid = {35336979}
}
@article{lin390075,
title = {Light-guided intrabodies for on-demand in situ target recognition in human cells.},
author = {Joest EF, Winter C, Wesalo JS, Deiters A, Tampe R.},
journal = {Chem Sci},
year = {2021},
doi = {10.1039/d1sc01331a},
pmid = {35342543}
}
@article{lin389953,
title = {Computational Network Inference for Bacterial Interactomics.},
author = {James K, Munoz-Munoz J.},
journal = {mSystems},
year = {2022},
doi = {10.1128/msystems.01456-21},
pmid = {35353009}
}
@article{lin390078,
title = {The hidden simplicity of metabolic networks is revealed by multireaction dependencies.},
author = {Kuken A, Langary D, Nikoloski Z.},
journal = {Sci Adv},
year = {2022},
doi = {10.1126/sciadv.abl6962},
pmid = {35353565}
}
@article{lin389881,
title = {An Archaea-specific c-type cytochrome maturation machinery is crucial for methanogenesis in Methanosarcina acetivorans.},
author = {Gupta D, Shalvarjian KE, Nayak DD.},
journal = {Elife},
year = {2022},
doi = {10.7554/elife.76970},
pmid = {35380107}
}
@article{lin389858,
title = {Exploration of Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetase Activity in Yeast.},
author = {Stieglitz JT, Lahiri P, Stout MI, Van Deventer JA.},
journal = {ACS Synth Biol},
year = {2022},
doi = {10.1021/acssynbio.2c00001},
pmid = {35417129}
}
@article{lin390081,
title = {Improvement of Direct Interspecies Electron Transfer via Adding Conductive Materials in Anaerobic Digestion: Mechanisms, Performances, and Challenges.},
author = {Chen L, Fang W, Chang J, Liang J, Zhang P, Zhang G.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.860749},
pmid = {35432222}
}
@article{lin390022,
title = {A Genome-Scale Metabolic Model of Methanoperedens nitroreducens: Assessing Bioenergetics and Thermodynamic Feasibility.},
author = {He B, Cai C, McCubbin T, Muriel JC, Sonnenschein N, Hu S, Yuan Z, Marcellin E.},
journal = {Metabolites},
year = {2022},
doi = {10.3390/metabo12040314},
pmid = {35448501}
}
@article{lin390262,
title = {The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism.},
author = {Zhang H, Gong X, Zhao Q, Mukai T, Vargas-Rodriguez O, Zhang H, Zhang Y, Wassel P, Amikura K, Maupin-Furlow J, Ren Y, Xu X, Wolf YI, Makarova KS, Koonin EV, Shen Y, Soll D, Fu X.},
journal = {Nucleic Acids Res},
year = {2022},
doi = {10.1093/nar/gkac271},
pmid = {35466371}
}
@article{lin390058,
title = {The effects of temperature shock on the treatment of high-concentration organic wastewater by an Fe0/GO-anaerobic system.},
author = {Wang X, Lin Y, Wang L, Yang D, Lan H.},
journal = {RSC Adv},
year = {2021},
doi = {10.1039/d1ra04773f},
pmid = {35479000}
}
@article{lin389894,
title = {Perspectives on Microbial Electron Transfer Networks for Environmental Biotechnology.},
author = {Zhou S, Song D, Gu JD, Yang Y, Xu M.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.845796},
pmid = {35495710}
}
@article{lin390141,
title = {Characterization of biochars derived from different materials and their effects on microbial dechlorination of pentachlorophenol in a consortium.},
author = {Zhang C, Zhang N, Xiao Z, Li Z, Zhang D.},
journal = {RSC Adv},
year = {2019},
doi = {10.1039/c8ra09410a},
pmid = {35517598}
}
@article{lin390303,
title = {Enhanced bioconversion of hydrogen and carbon dioxide to methane using a micro-nano sparger system: mass balance and energy consumption.},
author = {Liu Y, Wang Y, Wen X, Shimizu K, Lei Z, Kobayashi M, Zhang Z, Sumi I, Yao Y, Mogi Y.},
journal = {RSC Adv},
year = {2018},
doi = {10.1039/c8ra02924e},
pmid = {35541054}
}
@article{lin390072,
title = {Hydrogenotrophs-Based Biological Biogas Upgrading Technologies.},
author = {Antukh T, Lee I, Joo S, Kim H.},
journal = {Front Bioeng Biotechnol},
year = {2022},
doi = {10.3389/fbioe.2022.833482},
pmid = {35557857}
}
@article{lin389898,
title = {Mineralogical control on methylotrophic methanogenesis and implications for cryptic methane cycling in marine surface sediment.},
author = {Xiao KQ, Moore OW, Babakhani P, Curti L, Peacock CL.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-30422-4},
pmid = {35581283}
}
@article{lin389783,
title = {Metabolic Regulation of Mesophilic Methanosarcina barkeri to Ammonium Inhibition.},
author = {Duan H, He P, Zhang H, Shao L, Lu F.},
journal = {Environ Sci Technol},
year = {2022},
doi = {10.1021/acs.est.2c01212},
pmid = {35588324}
}
@article{lin181553,
title = {Investigating Abiotic and Biotic Mechanisms of Pyrite Reduction.},
author = {Spietz RL, Payne D, Kulkarni G, Metcalf WW, Roden EE, Boyd ES.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.878387},
pmid = {35615515}
}
@article{lin389912,
title = {Engineering nonphotosynthetic carbon fixation for production of bioplastics by methanogenic archaea.},
author = {Thevasundaram K, Gallagher JJ, Cherng F, Chang MCY.},
journal = {Proc Natl Acad Sci U S A},
year = {2022},
doi = {10.1073/pnas.2118638119},
pmid = {35639688}
}
@article{lin390006,
title = {Discovery and Genetic Code Expansion of a Polyethylene Terephthalate (PET) Hydrolase from the Human Saliva Metagenome for the Degradation and Bio-Functionalization of PET.},
author = {Eiamthong B, Meesawat P, Wongsatit T, Jitdee J, Sangsri R, Patchsung M, Aphicho K, Suraritdechachai S, Huguenin-Dezot N, Tang S, Suginta W, Paosawatyanyong B, Babu MM, Chin JW, Pakotiprapha D, Bhanthumnavin W, Uttamapinant C.},
journal = {Angew Chem Int Ed Engl},
year = {2022},
doi = {10.1002/anie.202203061},
pmid = {35656865}
}
@article{lin390657,
title = {A rapid and sensitive assay for quantifying the activity of both aerobic and anaerobic ribonucleotide reductases acting upon any or all substrates.},
author = {Levitz TS, Andree GA, Jonnalagadda R, Dawson CD, Bjork RE, Drennan CL.},
journal = {PLoS One},
year = {2022},
doi = {10.1371/journal.pone.0269572},
pmid = {35675376}
}
@article{lin390512,
title = {A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution.},
author = {Grau-Bove X, Navarrete C, Chiva C, Pribasnig T, Anto M, Torruella G, Galindo LJ, Lang BF, Moreira D, Lopez-Garcia P, Ruiz-Trillo I, Schleper C, Sabido E, Sebe-Pedros A.},
journal = {Nat Ecol Evol},
year = {2022},
doi = {10.1038/s41559-022-01771-6},
pmid = {35680998}
}
@article{lin390088,
title = {Stimulating Effect of Trichococcus flocculiformis on a Coculture of Syntrophomonas wolfei and Methanospirillum hungatei.},
author = {Doloman A, Boeren S, Miller CD, Sousa DZ.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.00391-22},
pmid = {35699440}
}
@article{lin389784,
title = {Metal-Free Semiconductor-Based Bio-Nano Hybrids for Sustainable CO2 -to-CH4 Conversion with High Quantum Yield.},
author = {Hu A, Ye J, Ren G, Qi Y, Chen Y, Zhou S.},
journal = {Angew Chem Int Ed Engl},
year = {2022},
doi = {10.1002/anie.202206508},
pmid = {35713977}
}
@article{lin389992,
title = {Photocatalytic Material-Microorganism Hybrid System and Its Application-A Review.},
author = {Song J, Lin H, Zhao G, Huang X.},
journal = {Micromachines (Basel)},
year = {2022},
doi = {10.3390/mi13060861},
pmid = {35744475}
}
@article{lin390139,
title = {Model-based driving mechanism analysis for butyric acid production in Clostridium tyrobutyricum.},
author = {Feng J, Guo X, Cai F, Fu H, Wang J.},
journal = {Biotechnol Biofuels Bioprod},
year = {2022},
doi = {10.1186/s13068-022-02169-z},
pmid = {35752796}
}
@article{lin390241,
title = {A purified energy-converting hydrogenase from Thermoanaerobacter kivui demonstrates coupled H+-translocation and reduction in vitro.},
author = {Katsyv A, Muller V.},
journal = {J Biol Chem},
year = {2022},
doi = {10.1016/j.jbc.2022.102216},
pmid = {35779632}
}
@article{lin390007,
title = {Growth rate-dependent coordination of catabolism and anabolism in the archaeon Methanococcus maripaludis under phosphate limitation.},
author = {Gu W, Muller AL, Deutzmann JS, Williamson JR, Spormann AM.},
journal = {ISME J},
year = {2022},
doi = {10.1038/s41396-022-01278-9},
pmid = {35780255}
}
@article{lin390019,
title = {Expanding the phylogenetic distribution of cytochrome b-containing methanogenic archaea sheds light on the evolution of methanogenesis.},
author = {Ou YF, Dong HP, Dong HP, McIlroy SJ, Crowe SA, Hallam SJ, Han P, Kallmeyer J, Simister RL, Vuillemin A, Leu AO, Liu Z, Zheng YL, Sun QL, Liu M, Tyson GW, Hou LJ.},
journal = {ISME J},
year = {2022},
doi = {10.1038/s41396-022-01281-0},
pmid = {35810262}
}
@article{lin389780,
title = {Anaerobic methane oxidation coupled to ferrihydrite reduction by Methanosarcina barkeri.},
author = {Yu L, He D, Yang L, Rensing C, Zeng RJ, Zhou S.},
journal = {Sci Total Environ},
year = {2022},
doi = {10.1016/j.scitotenv.2022.157235},
pmid = {35817105}
}
@article{lin389806,
title = {Theoretical characterisation of electron tunnelling from granular activated carbon to electron accepting organisms in direct interspecies electron transfer.},
author = {Rao R, Hu J, Lee PH.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-15606-8},
pmid = {35858919}
}
@article{lin389993,
title = {Proteomic Analysis of Methanococcus voltae Grown in the Presence of Mineral and Nonmineral Sources of Iron and Sulfur.},
author = {Steward KF, Payne D, Kincannon W, Johnson C, Lensing M, Fausset H, Nemeth B, Shepard EM, Broderick WE, Broderick JB, Dubois J, Bothner B.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.01893-22},
pmid = {35876569}
}
@article{lin181471,
title = {Sustained Biotic-Abiotic Hybrids Methanogenesis Enabled Using Metal-Free Black Phosphorus/Carbon Nitride.},
author = {Hu A, Fu T, Ren G, Zhuang M, Yuan W, Zhong S, Zhou S.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.957066},
pmid = {35903479}
}
@article{lin390328,
title = {Interaction of the gas vesicle proteins GvpA, GvpC, GvpN, and GvpO of Halobacterium salinarum.},
author = {Jost A, Pfeifer F.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.971917},
pmid = {35966690}
}
@article{lin181557,
title = {Promotion of Nitrogen Fixation of Diverse Heterotrophs by Solid-Phase Humin.},
author = {Dey S, Kasai T, Katayama A.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.853411},
pmid = {35992702}
}
@article{lin390130,
title = {Isolation, Physiological Characterization, and Antibiotic Susceptibility Testing of Fast-Growing Bacteria from the Sea-Affected Temporary Meltwater Ponds in the Thala Hills Oasis (Enderby Land, East Antarctica).},
author = {Akulava V, Miamin U, Akhremchuk K, Valentovich L, Dolgikh A, Shapaval V.},
journal = {Biology (Basel)},
year = {2022},
doi = {10.3390/biology11081143},
pmid = {36009770}
}
@article{lin390064,
title = {Influence of dietary carbohydrate profile on the dairy cow rumen meta-proteome.},
author = {Mulakala BK, Smith KM, Snider MA, Ayers A, Honan MC, Greenwood SL.},
journal = {J Dairy Sci},
year = {2022},
doi = {10.3168/jds.2022-21812},
pmid = {36028341}
}
@article{lin390221,
title = {Methane Production by Facultative Anaerobic Wood-Rot Fungi via a New Halomethane-Dependent Pathway.},
author = {Huang X, Liu X, Xue Y, Pan B, Xiao L, Wang S, Lever MA, Hinrichs KU, Inagaki F, Liu C.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.01700-22},
pmid = {36102652}
}
@article{lin390171,
title = {Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli.},
author = {Steinhilper R, Hoff G, Heider J, Murphy BJ.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-32831-x},
pmid = {36104349}
}
@article{lin390036,
title = {Ancestral archaea expanded the genetic code with pyrrolysine.},
author = {Guo LT, Amikura K, Jiang HK, Mukai T, Fu X, Wang YS, O'Donoghue P, Soll D, Tharp JM.},
journal = {J Biol Chem},
year = {2022},
doi = {10.1016/j.jbc.2022.102521},
pmid = {36152750}
}
@article{lin390030,
title = {Absence of oxygen effect on microbial structure and methane production during drying and rewetting events.},
author = {Liu T, Li X, Yekta SS, Bjorn A, Mu BZ, Masuda LSM, Schnurer A, Enrich-Prast A.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-20448-5},
pmid = {36195651}
}
@article{lin390053,
title = {Genetically encoded chemical crosslinking of carbohydrate.},
author = {Li S, Wang N, Yu B, Sun W, Wang L.},
journal = {Nat Chem},
year = {2023},
doi = {10.1038/s41557-022-01059-z},
pmid = {36216893}
}
@article{lin389986,
title = {Light-independent anaerobic microbial oxidation of manganese driven by an electrosyntrophic coculture.},
author = {Huang L, Liu X, Rensing C, Yuan Y, Zhou S, Nealson KH.},
journal = {ISME J},
year = {2023},
doi = {10.1038/s41396-022-01335-3},
pmid = {36261509}
}
@article{lin389959,
title = {Expression of divergent methyl/alkyl coenzyme M reductases from uncultured archaea.},
author = {Shao N, Fan Y, Chou CW, Yavari S, Williams RV, Amster IJ, Brown SM, Drake IJ, Duin EC, Whitman WB, Liu Y.},
journal = {Commun Biol},
year = {2022},
doi = {10.1038/s42003-022-04057-6},
pmid = {36266535}
}
@article{lin389951,
title = {Genetic Code Expansion in Pseudomonas putida KT2440.},
author = {He X, Gao T, Chen Y, Liu K, Guo J, Niu W.},
journal = {ACS Synth Biol},
year = {2022},
doi = {10.1021/acssynbio.2c00325},
pmid = {36287825}
}
@article{lin389929,
title = {Accelerated Bioconversion of Chemically Solubilized Lignite Solution to Methane by Methanogenic Consortium: Experimental Results and Their Application to the Subsurface Cultivation and Gasification Method.},
author = {Ueno A, Tamazawa S, Tamamura S, Murakami T, Kiyama T, Inomata H, Aramaki N, Yoshida K, Yamaguchi S, Aoyama H, Naganuma T, Igarashi T.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10101984},
pmid = {36296260}
}
@article{lin389781,
title = {Sustainable Conversion of Microplastics to Methane with Ultrahigh Selectivity by a Biotic-Abiotic Hybrid Photocatalytic System.},
author = {Ye J, Chen Y, Gao C, Wang C, Hu A, Dong G, Chen Z, Zhou S, Xiong Y.},
journal = {Angew Chem Int Ed Engl},
year = {2022},
doi = {10.1002/anie.202213244},
pmid = {36322457}
}
@article{lin181470,
title = {Solar-driven methanogenesis with ultrahigh selectivity by turning down H2 production at biotic-abiotic interface.},
author = {Ye J, Wang C, Gao C, Fu T, Yang C, Ren G, Lu J, Zhou S, Xiong Y.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-34423-1},
pmid = {36329056}
}
@article{lin389892,
title = {Generating Efficient Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetases for Structurally Diverse Non-Canonical Amino Acids.},
author = {Avila-Crump S, Hemshorn ML, Jones CM, Mbengi L, Meyer K, Griffis JA, Jana S, Petrina GE, Pagar VV, Karplus PA, Petersson EJ, Perona JJ, Mehl RA, Cooley RB.},
journal = {ACS Chem Biol},
year = {2022},
doi = {10.1021/acschembio.2c00639},
pmid = {36383641}
}
@article{lin389823,
title = {Structures of Methanomethylophilus alvus Pyrrolysine tRNA-Synthetases Support the Need for De Novo Selections When Altering the Substrate Specificity.},
author = {Gottfried-Lee I, Perona JJ, Karplus PA, Mehl RA, Cooley RB.},
journal = {ACS Chem Biol},
year = {2022},
doi = {10.1021/acschembio.2c00640},
pmid = {36395426}
}
@article{lin390040,
title = {A widespread group of large plasmids in methanotrophic Methanoperedens archaea.},
author = {Schoelmerich MC, Ouboter HT, Sachdeva R, Penev PI, Amano Y, West-Roberts J, Welte CU, Banfield JF.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-34588-9},
pmid = {36400771}
}
@article{lin389947,
title = {Comparative Transcriptomics Sheds Light on Remodeling of Gene Expression during Diazotrophy in the Thermophilic Methanogen Methanothermococcus thermolithotrophicus.},
author = {Maslac N, Sidhu C, Teeling H, Wagner T.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.02443-22},
pmid = {36409126}
}
@article{lin389921,
title = {Enhanced Electron Uptake and Methane Production by Corrosive Methanogens during Electromethanogenesis.},
author = {Mayer F, Sabel-Becker B, Holtmann D.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10112237},
pmid = {36422309}
}
@article{lin389902,
title = {Quantitative Analysis and Optimization of Site-Specific Protein Bioconjugation in Mammalian Cells.},
author = {Ryan A, Shade O, Bardhan A, Bartnik A, Deiters A.},
journal = {Bioconjug Chem},
year = {2022},
doi = {10.1021/acs.bioconjchem.2c00451},
pmid = {36459098}
}
@article{lin390050,
title = {A novel viral vaccine platform based on engineered transfer RNA.},
author = {Wang TY, Meng FD, Sang GJ, Zhang HL, Tian ZJ, Zheng H, Cai XH, Tang YD.},
journal = {Emerg Microbes Infect},
year = {2023},
doi = {10.1080/22221751.2022.2157339},
pmid = {36482724}
}
@article{lin390013,
title = {Response of soil microbial compositional and functional heterogeneity to grazing exclusion in alpine shrub and meadows in the Qinghai-Tibet Plateau.},
author = {Wang S, Abalori TA, Wang W, Deng X, Liu W, Wang J, Cao W.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1038805},
pmid = {36532507}
}
@article{lin389835,
title = {Insights into pyrrolysine function from structures of a trimethylamine methyltransferase and its corrinoid protein complex.},
author = {Li J, Kang PT, Jiang R, Lee JY, Soares JA, Krzycki JA, Chan MK.},
journal = {Commun Biol},
year = {2023},
doi = {10.1038/s42003-022-04397-3},
pmid = {36646841}
}
@article{lin390490,
title = {Structures of the sulfite detoxifying F420-dependent enzyme from Methanococcales.},
author = {Jespersen M, Pierik AJ, Wagner T.},
journal = {Nat Chem Biol},
year = {2023},
doi = {10.1038/s41589-022-01232-y},
pmid = {36658338}
}
@article{lin390219,
title = {A bio-orthogonal linear ubiquitin probe identifies STAT3 as a direct substrate of OTULIN in glioblastoma.},
author = {Du X, Pang J, Gu B, Si T, Chang Y, Li T, Wu M, Wang Z, Wang Y, Feng J, Wu N, Man J, Li H, Li A, Zhang T, Wang B, Duan X.},
journal = {Nucleic Acids Res},
year = {2023},
doi = {10.1093/nar/gkad002},
pmid = {36660824}
}
@article{lin389877,
title = {Chemically Acylated tRNAs are Functional in Zebrafish Embryos.},
author = {Brown W, Galpin JD, Rosenblum C, Tsang M, Ahern CA, Deiters A.},
journal = {J Am Chem Soc},
year = {2023},
doi = {10.1021/jacs.2c11452},
pmid = {36669466}
}
@article{lin389903,
title = {Role of biochar in anaerobic microbiome enrichment and methane production enhancement during olive mill wastewater biomethanization.},
author = {Abid N, Karray F, Kallel I, Slim M, Barakat A, Mhiri N, Chamkha M, Sayadi S.},
journal = {Front Bioeng Biotechnol},
year = {2022},
doi = {10.3389/fbioe.2022.1100533},
pmid = {36686251}
}
@article{lin389963,
title = {Methyl-Based Methanogenesis: an Ecological and Genomic Review.},
author = {Bueno de Mesquita CP, Wu D, Tringe SG.},
journal = {Microbiol Mol Biol Rev},
year = {2023},
doi = {10.1128/mmbr.00024-22},
pmid = {36692297}
}
@article{lin181464,
title = {A unified and simple medium for growing model methanogens.},
author = {Dzofou Ngoumelah D, Harnisch F, Sulheim S, Heggeset TMB, Aune IH, Wentzel A, Kretzschmar J.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1046260},
pmid = {36704566}
}
@article{lin390253,
title = {Biochar Facilitated Direct Interspecies Electron Transfer in Anaerobic Digestion to Alleviate Antibiotics Inhibition and Enhance Methanogenesis: A Review.},
author = {Zhang K, Deng Y, Liu Z, Feng Y, Hu C, Wang Z.},
journal = {Int J Environ Res Public Health},
year = {2023},
doi = {10.3390/ijerph20032296},
pmid = {36767663}
}
@article{lin181460,
title = {Thermodynamic restrictions determine ammonia tolerance of methanogenic pathways in Methanosarcina barkeri.},
author = {Yi Y, Dolfing J, Jin G, Fang X, Han W, Liu L, Tang Y, Cheng L.},
journal = {Water Res},
year = {2023},
doi = {10.1016/j.watres.2023.119664},
pmid = {36775717}
}
@article{lin390477,
title = {Site-specific encoding of photoactivity and photoreactivity into antibody fragments.},
author = {Bridge T, Wegmann U, Crack JC, Orman K, Shaikh SA, Farndon W, Martins C, Saalbach G, Sachdeva A.},
journal = {Nat Chem Biol},
year = {2023},
doi = {10.1038/s41589-022-01251-9},
pmid = {36797401}
}
@article{lin389816,
title = {Rapid shift in greenhouse forcing of emerging arctic peatlands.},
author = {Christensen TR, Scheller J, Scheel M, Rudd DA, Jackowicz-Korczynski M, Mastepanov M, Lopez-Blanco E.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-29859-4},
pmid = {36806215}
}
@article{lin389905,
title = {Anaerobic demethylation of guaiacyl-derived monolignols enabled by a designed artificial cobalamin methyltransferase fusion enzyme.},
author = {Grimm C, Pompei S, Egger K, Fuchs M, Kroutil W.},
journal = {RSC Adv},
year = {2023},
doi = {10.1039/d2ra08005b},
pmid = {36816070}
}
@article{lin390120,
title = {Aptamer-programmable adeno-associated viral vectors as a novel platform for cell-specific gene transfer.},
author = {Puzzo F, Zhang C, Powell Gray B, Zhang F, Sullenger BA, Kay MA.},
journal = {Mol Ther Nucleic Acids},
year = {2023},
doi = {10.1016/j.omtn.2023.01.007},
pmid = {36817723}
}
@article{lin389775,
title = {Physiological Responses of Methanosarcina barkeri under Ammonia Stress at the Molecular Level: The Unignorable Lipid Reprogramming.},
author = {Liu C, Zhang X, Chen C, Yin Y, Zhao G, Chen Y.},
journal = {Environ Sci Technol},
year = {2023},
doi = {10.1021/acs.est.2c09631},
pmid = {36820857}
}
@article{lin390169,
title = {Biological treatment of biowaste as an innovative source of CO-The role of composting process.},
author = {Sobieraj K, Stegenta-Dabrowska S, Luo G, Koziel JA, Bialowiec A.},
journal = {Front Bioeng Biotechnol},
year = {2023},
doi = {10.3389/fbioe.2023.1126737},
pmid = {36845185}
}
@article{lin390052,
title = {Cross-Feedings, Competition, and Positive and Negative Synergies in a Four-Species Synthetic Community for Anaerobic Degradation of Cellulose to Methane.},
author = {Wang D, Hunt KA, Candry P, Tao X, Wofford NQ, Zhou J, McInerney MJ, Stahl DA, Tanner RS, Zhou A, Winkler M, Pan C.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.03189-22},
pmid = {36847519}
}
@article{lin181492,
title = {The origin and evolution of methanogenesis and Archaea are intertwined.},
author = {Mei R, Kaneko M, Imachi H, Nobu MK.},
journal = {PNAS Nexus},
year = {2023},
doi = {10.1093/pnasnexus/pgad023},
pmid = {36874274}
}
@article{lin389990,
title = {Functional comparison of metabolic networks across species.},
author = {Ramon C, Stelling J.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-37429-5},
pmid = {36973280}
}
@article{lin389850,
title = {Crystal Structure of Pyrrolysyl-tRNA Synthetase from a Methanogenic Archaeon ISO4-G1 and Its Structure-Based Engineering for Highly-Productive Cell-Free Genetic Code Expansion with Non-Canonical Amino Acids.},
author = {Yanagisawa T, Seki E, Tanabe H, Fujii Y, Sakamoto K, Yokoyama S.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24076256},
pmid = {37047230}
}
@article{lin389971,
title = {Engineering mutually orthogonal PylRS/tRNA pairs for dual encoding of functional histidine analogues.},
author = {Taylor CJ, Hardy FJ, Burke AJ, Bednar RM, Mehl RA, Green AP, Lovelock SL.},
journal = {Protein Sci},
year = {2023},
doi = {10.1002/pro.4640},
pmid = {37051694}
}
@article{lin390085,
title = {Culture adaptation for enhanced biogas production from birch wood applying stable carbon isotope analysis to monitor changes in the microbial community.},
author = {Hashemi S, Solli L, Lien KM, Lamb JJ, Horn SJ.},
journal = {Biotechnol Biofuels Bioprod},
year = {2023},
doi = {10.1186/s13068-023-02328-w},
pmid = {37149601}
}
@article{lin389989,
title = {Minimizing the Anticodon-Recognized Loop of Methanococcus jannaschii Tyrosyl-tRNA Synthetase to Improve the Efficiency of Incorporating Noncanonical Amino Acids.},
author = {Hu Z, Liang J, Su T, Zhang D, Li H, Gao X, Yao W, Song X.},
journal = {Biomolecules},
year = {2023},
doi = {10.3390/biom13040610},
pmid = {37189358}
}
@article{lin390079,
title = {Two Distinct Thermodynamic Gradients for Cellular Metalation of Vitamin B12.},
author = {Young TR, Deery E, Foster AW, Martini MA, Osman D, Warren MJ, Robinson NJ.},
journal = {JACS Au},
year = {2023},
doi = {10.1021/jacsau.3c00119},
pmid = {37234125}
}
@article{lin390000,
title = {Molecular characterization of microorganisms with industrial potential for methane production in sludge from Kangemi sewage treatment plant, Nyeri county-Kenya.},
author = {Kimisto AK, Muia AW, Ong'ondo GO, Ndung'u KC.},
journal = {Heliyon},
year = {2023},
doi = {10.1016/j.heliyon.2023.e15715},
pmid = {37234610}
}
@article{lin390417,
title = {Expanding the substrate scope of pyrrolysyl-transfer RNA synthetase enzymes to include non-alpha-amino acids in vitro and in vivo.},
author = {Fricke R, Swenson CV, Roe LT, Hamlish NX, Shah B, Zhang Z, Ficaretta E, Ad O, Smaga S, Gee CL, Chatterjee A, Schepartz A.},
journal = {Nat Chem},
year = {2023},
doi = {10.1038/s41557-023-01224-y},
pmid = {37264106}
}
@article{lin390116,
title = {Optimizing Strategies for Bio-Based Ethanol Production Using Genome-Scale Metabolic Modeling of the Hyperthermophilic Archaeon, Pyrococcus furiosus.},
author = {Vailionis JL, Zhao W, Zhang K, Rodionov DA, Lipscomb GL, Tanwee TNN, O'Quinn HC, Bing RG, Kelly RM, Adams MWW, Zhang Y.},
journal = {Appl Environ Microbiol},
year = {2023},
doi = {10.1128/aem.00563-23},
pmid = {37289085}
}
@article{lin390031,
title = {Enrichment of rare methanogenic Archaea shows their important ecological role in natural high-CO2 terrestrial subsurface environments.},
author = {Jia Z, Lipus D, Burckhardt O, Bussert R, Sondermann M, Bartholomaus A, Wagner D, Kallmeyer J.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1105259},
pmid = {37293225}
}
@article{lin389934,
title = {Putative nucleotide-based second messengers in archaea.},
author = {van der Does C, Braun F, Ren H, Albers SV.},
journal = {Microlife},
year = {2023},
doi = {10.1093/femsml/uqad027},
pmid = {37305433}
}
@article{lin389932,
title = {Methane production by Methanothrix thermoacetophila via direct interspecies electron transfer with Geobacter metallireducens.},
author = {Zhou J, Smith JA, Li M, Holmes DE.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.00360-23},
pmid = {37306514}
}
@article{lin389919,
title = {McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly.},
author = {Chadwick GL, Joiner AMN, Ramesh S, Mitchell DA, Nayak DD.},
journal = {Proc Natl Acad Sci U S A},
year = {2023},
doi = {10.1073/pnas.2302815120},
pmid = {37307484}
}
@article{lin389832,
title = {Genetic and Physiological Probing of Cytoplasmic Bypasses for the Energy-Converting Methyltransferase Mtr in Methanosarcina acetivorans.},
author = {Schone C, Poehlein A, Rother M.},
journal = {Appl Environ Microbiol},
year = {2023},
doi = {10.1128/aem.02161-22},
pmid = {37347168}
}
@article{lin390018,
title = {Ultrafast Bioorthogonal Spin-Labeling and Distance Measurements in Mammalian Cells Using Small, Genetically Encoded Tetrazine Amino Acids.},
author = {Jana S, Evans EGB, Jang HS, Zhang S, Zhang H, Rajca A, Gordon SE, Zagotta WN, Stoll S, Mehl RA.},
journal = {J Am Chem Soc},
year = {2023},
doi = {10.1021/jacs.3c00967},
pmid = {37364003}
}
@article{lin389958,
title = {Origin, Diversity, and Multiple Roles of Enzymes with Metallo-beta-Lactamase Fold from Different Organisms.},
author = {Diene SM, Pontarotti P, Azza S, Armstrong N, Pinault L, Chabriere E, Colson P, Rolain JM, Raoult D.},
journal = {Cells},
year = {2023},
doi = {10.3390/cells12131752},
pmid = {37443786}
}
@article{lin390021,
title = {Carbon Monoxide Production during Bio-Waste Composting under Different Temperature and Aeration Regimes.},
author = {Sobieraj K, Stegenta-Dabrowska S, Zafiu C, Binner E, Bialowiec A.},
journal = {Materials (Basel)},
year = {2023},
doi = {10.3390/ma16134551},
pmid = {37444865}
}
@article{lin389918,
title = {Metapangenomic investigation provides insight into niche differentiation of methanogenic populations from the subsurface serpentinizing environment, Samail Ophiolite, Oman.},
author = {Thieringer PH, Boyd ES, Templeton AS, Spear JR.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1205558},
pmid = {37465028}
}
@article{lin390112,
title = {Regulation of IL-24/IL-20R2 complex formation using photocaged tyrosines and UV light.},
author = {Pham PN, Zahradnik J, Kolarova L, Schneider B, Fuertes G.},
journal = {Front Mol Biosci},
year = {2023},
doi = {10.3389/fmolb.2023.1214235},
pmid = {37484532}
}
@article{lin389867,
title = {Genetic Encoding of Arylazopyrazole Phenylalanine for Optical Control of Translation.},
author = {Janosko CP, Shade O, Courtney TM, Horst TJ, Liu M, Khare SD, Deiters A.},
journal = {ACS Omega},
year = {2023},
doi = {10.1021/acsomega.3c03512},
pmid = {37521667}
}
@article{lin390147,
title = {Influence of sulfide on diazotrophic growth of the methanogen Methanococcus maripaludis and its implications for the origin of nitrogenase.},
author = {Payne D, Spietz RL, Newell DL, Dijkstra P, Boyd ES.},
journal = {Commun Biol},
year = {2023},
doi = {10.1038/s42003-023-05163-9},
pmid = {37524775}
}
@article{lin181463,
title = {The reduction of environmentally abundant iron oxides by the methanogen Methanosarcina barkeri.},
author = {Eliani-Russak E, Tik Z, Uzi-Gavrilov S, Meijler MM, Sivan O.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1197299},
pmid = {37547683}
}
@article{lin389792,
title = {The Radical SAM Heme Synthase AhbD from Methanosarcina barkeri Contains Two Auxiliary [4Fe-4S] Clusters.},
author = {Fix I, Heidinger L, Friedrich T, Layer G.},
journal = {Biomolecules},
year = {2023},
doi = {10.3390/biom13081268},
pmid = {37627333}
}
@article{lin181472,
title = {Detrimental impact of the Geobacter metallireducens type VI secretion system on direct interspecies electron transfer.},
author = {Smith JA, Holmes DE, Woodard TL, Li Y, Liu X, Wang LY, Meier D, Schwarz IA, Lovley DR.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.00941-23},
pmid = {37650614}
}
@article{lin390087,
title = {Cuticular competing endogenous RNAs regulate insecticide penetration and resistance in a major agricultural pest.},
author = {Meng LW, Yuan GR, Chen ML, Zheng LS, Dou W, Peng Y, Bai WJ, Li ZY, Vontas J, Wang JJ.},
journal = {BMC Biol},
year = {2023},
doi = {10.1186/s12915-023-01694-z},
pmid = {37667263}
}
@article{lin389772,
title = {Revealing Co-N4 @Co-NP Bridge-Enabled Fast Charge Transfer and Active Intracellular Methanogenesis in Bio-Electrochemical CO2 -Conversion with Methanosarcina Barkeri.},
author = {Xia R, Cheng J, Chen Z, Zhang Z, Zhou X, Zhou J, Zhang M.},
journal = {Adv Mater},
year = {2023},
doi = {10.1002/adma.202304920},
pmid = {37689983}
}
@article{lin390002,
title = {Expression of V-nitrogenase and Fe-nitrogenase in Methanosarcina acetivorans is controlled by molybdenum, fixed nitrogen, and the expression of Mo-nitrogenase.},
author = {Chanderban M, Hill CA, Dhamad AE, Lessner DJ.},
journal = {Appl Environ Microbiol},
year = {2023},
doi = {10.1128/aem.01033-23},
pmid = {37695043}
}
@article{lin390165,
title = {Amber-codon suppression for spatial localization and in vivo photoaffinity capture of the interactome of the Pseudomonas aeruginosa rare lipoprotein A lytic transglycosylase.},
author = {Avila-Cobian LF, Hoshino H, Horsman ME, Nguyen VT, Qian Y, Feltzer R, Kim C, Hu DD, Champion MM, Fisher JF, Mobashery S.},
journal = {Protein Sci},
year = {2023},
doi = {10.1002/pro.4781},
pmid = {37703013}
}
@article{lin389884,
title = {Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases.},
author = {Fujishiro T, Takaoka K.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-41289-4},
pmid = {37709776}
}
@article{lin181469,
title = {Respiration-driven methanotrophic growth of diverse marine methanogens.},
author = {Yan Z, Du K, Yan Y, Huang R, Zhu F, Yuan X, Wang S, Ferry JG.},
journal = {Proc Natl Acad Sci U S A},
year = {2023},
doi = {10.1073/pnas.2303179120},
pmid = {37729205}
}
@article{lin389923,
title = {Nanomaterials for Advanced Photocatalytic Plastic Conversion.},
author = {Kim JY, Youn DH.},
journal = {Molecules},
year = {2023},
doi = {10.3390/molecules28186502},
pmid = {37764278}
}
@article{lin389907,
title = {Isoform-specific optical activation of kinase function reveals p38-ERK signaling crosstalk.},
author = {Zhou W, Ryan A, Janosko CP, Shoger KE, Haugh JM, Gottschalk RA, Deiters A.},
journal = {RSC Chem Biol},
year = {2023},
doi = {10.1039/d2cb00157h},
pmid = {37799579}
}
@article{lin389788,
title = {Methanogens acquire and bioaccumulate nickel during reductive dissolution of nickelian pyrite.},
author = {Spietz RL, Payne D, Boyd ES.},
journal = {Appl Environ Microbiol},
year = {2023},
doi = {10.1128/aem.00991-23},
pmid = {37830848}
}
@article{lin390276,
title = {An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter.},
author = {Casini I, McCubbin T, Esquivel-Elizondo S, Luque GG, Evseeva D, Fink C, Beblawy S, Youngblut ND, Aristilde L, Huson DH, Drager A, Ley RE, Marcellin E, Angenent LT, Molitor B.},
journal = {iScience},
year = {2023},
doi = {10.1016/j.isci.2023.108016},
pmid = {37854702}
}
@article{lin389994,
title = {Magnetite Alters the Metabolic Interaction between Methanogens and Sulfate-Reducing Bacteria.},
author = {Giangeri G, Tsapekos P, Gaspari M, Ghofrani-Isfahani P, Hong Lin MKT, Treu L, Kougias P, Campanaro S, Angelidaki I.},
journal = {Environ Sci Technol},
year = {2023},
doi = {10.1021/acs.est.3c05948},
pmid = {37862709}
}
@article{lin389973,
title = {Biological methane production and accumulation under sulfate-rich conditions at Cape Lookout Bight, NC.},
author = {Coon GR, Duesing PD, Paul R, Baily JA, Lloyd KG.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1268361},
pmid = {37869653}
}
@article{lin389991,
title = {Microbial drivers of DMSO reduction and DMS-dependent methanogenesis in saltmarsh sediments.},
author = {Tebbe DA, Gruender C, Dlugosch L, Lohmus K, Rolfes S, Konneke M, Chen Y, Engelen B, Schafer H.},
journal = {ISME J},
year = {2023},
doi = {10.1038/s41396-023-01539-1},
pmid = {37880542}
}
@article{lin181466,
title = {Rumen microbial degradation of bromoform from red seaweed (Asparagopsis taxiformis) and the impact on rumen fermentation and methanogenic archaea.},
author = {Romero P, Belanche A, Jimenez E, Hueso R, Ramos-Morales E, Salwen JK, Kebreab E, Yanez-Ruiz DR.},
journal = {J Anim Sci Biotechnol},
year = {2023},
doi = {10.1186/s40104-023-00935-z},
pmid = {37907951}
}
@article{lin390145,
title = {Dual stop codon suppression in mammalian cells with genomically integrated genetic code expansion machinery.},
author = {Meineke B, Heimgartner J, Caridha R, Block MF, Kimler KJ, Pires MF, Landreh M, Elsasser SJ.},
journal = {Cell Rep Methods},
year = {2023},
doi = {10.1016/j.crmeth.2023.100626},
pmid = {37935196}
}
@article{lin390029,
title = {Potential metabolic and genetic interaction among viruses, methanogen and methanotrophic archaea, and their syntrophic partners.},
author = {Wang L, Wang Y, Huang X, Ma R, Li J, Wang F, Jiao N, Zhang R.},
journal = {ISME Commun},
year = {2022},
doi = {10.1038/s43705-022-00135-2},
pmid = {37938729}
}
@article{lin389908,
title = {Methanomethylophilus alvi gen. nov., sp. nov., a Novel Hydrogenotrophic Methyl-Reducing Methanogenic Archaea of the Order Methanomassiliicoccales Isolated from the Human Gut and Proposal of the Novel Family Methanomethylophilaceae fam. nov.},
author = {Borrel G, Fadhlaoui K, Ben Hania W, Gaci N, Pehau-Arnaudet G, Chaudhary PP, Vandekerckove P, Ballet N, Alric M, O'Toole PW, Fardeau ML, Ollivier B, Brugere JF.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11112794},
pmid = {38004804}
}
@article{lin390149,
title = {Evolving understanding of rumen methanogen ecophysiology.},
author = {Khairunisa BH, Heryakusuma C, Ike K, Mukhopadhyay B, Susanti D.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1296008},
pmid = {38029083}
}
@article{lin389945,
title = {Truncation-Free Genetic Code Expansion with Tetrazine Amino Acids for Quantitative Protein Ligations.},
author = {Eddins AJ, Bednar RM, Jana S, Pung AH, Mbengi L, Meyer K, Perona JJ, Cooley RB, Karplus PA, Mehl RA.},
journal = {Bioconjug Chem},
year = {2023},
doi = {10.1021/acs.bioconjchem.3c00380},
pmid = {38047550}
}
@article{lin181462,
title = {Electrical current disrupts the electron transfer in defined consortia.},
author = {Yee MO, Ottosen LDM, Rotaru AE.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.14373},
pmid = {38070192}
}
@article{lin390009,
title = {Grazing exclusion alters soil methane flux and methanotrophic and methanogenic communities in alpine meadows on the Qinghai-Tibet Plateau.},
author = {Wang S, Chen X, Li W, Gong W, Wang Z, Cao W.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1293720},
pmid = {38164400}
}
@article{lin389820,
title = {Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments.},
author = {Tsola SL, Zhu Y, Chen Y, Sanders IA, Economou CK, Bruchert V, Eyice O.},
journal = {Microbiome},
year = {2024},
doi = {10.1186/s40168-023-01720-w},
pmid = {38172958}
}
@article{lin181552,
title = {A shift between mineral and nonmineral sources of iron and sulfur causes proteome-wide changes in Methanosarcina barkeri.},
author = {Fausset H, Spietz RL, Cox S, Cooper G, Spurzem S, Tokmina-Lukaszewska M, DuBois J, Broderick JB, Shepard EM, Boyd ES, Bothner B.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.00418-23},
pmid = {38179920}
}
@article{lin389842,
title = {- Invited Review - Ruminal ciliates as modulators of the rumen microbiome.},
author = {Park T.},
journal = {Anim Biosci},
year = {2024},
doi = {10.5713/ab.23.0309},
pmid = {38186255}
}
@article{lin390043,
title = {- Invited Review - Understanding the functionality of the rumen microbiota: searching for better opportunities for rumen microbial manipulation.},
author = {Qi W, Xue MY, Jia MH, Zhang S, Yan Q, Sun HZ.},
journal = {Anim Biosci},
year = {2024},
doi = {10.5713/ab.23.0308},
pmid = {38186256}
}
@article{lin389977,
title = {Selective trace elements significantly enhanced methane production in coal bed methane systems by stimulating microbial activity.},
author = {Chin K-J, Unal B, Sanderson M, Aboderin F, Nusslein K.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.03508-23},
pmid = {38236038}
}
@article{lin389916,
title = {Assessment of Potential Anti-Methanogenic and Antimicrobial Activity of Ethyl Nitroacetate, alpha-Lipoic Acid, Taurine and L-Cysteinesulfinic Acid In Vitro.},
author = {Levent G, Bozic A, Petrujkic BT, Callaway TR, Poole TL, Crippen TL, Harvey RB, Ochoa-Garcia P, Corral-Luna A, Yeater KM, Anderson RC.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms12010034},
pmid = {38257860}
}
@article{lin390194,
title = {Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions.},
author = {Xie F, Zhao S, Zhan X, Zhou Y, Li Y, Zhu W, Pope PB, Attwood GT, Jin W, Mao S.},
journal = {Genome Biol},
year = {2024},
doi = {10.1186/s13059-024-03167-0},
pmid = {38263062}
}
@article{lin390172,
title = {Organic Semiconducting Polymers for Augmenting Biosynthesis and Bioconversion.},
author = {Chen W, Lin H, Yu W, Huang Y, Lv F, Bai H, Wang S.},
journal = {JACS Au},
year = {2024},
doi = {10.1021/jacsau.3c00576},
pmid = {38274265}
}
@article{lin390001,
title = {DsrMKJOP is the terminal reductase complex in anaerobic sulfate respiration.},
author = {Barbosa ACC, Venceslau SS, Pereira IAC.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2313650121},
pmid = {38285932}
}
@article{lin389889,
title = {Genetically encoded lysine photocage for spatiotemporal control of TDP-43 nuclear import.},
author = {Shadish JA, Lee JC.},
journal = {Biophys Chem},
year = {2024},
doi = {10.1016/j.bpc.2024.107191},
pmid = {38290242}
}
@article{lin390152,
title = {Rat microbial biogeography and age-dependent lactic acid bacteria in healthy lungs.},
author = {Zhao L, Cunningham CM, Andruska AM, Schimmel K, Ali MK, Kim D, Gu S, Chang JL, Spiekerkoetter E, Nicolls MR.},
journal = {Lab Anim (NY)},
year = {2024},
doi = {10.1038/s41684-023-01322-x},
pmid = {38297075}
}
@article{lin389826,
title = {Pyruvate-dependent growth of Methanosarcina acetivorans.},
author = {Richter M, Sattler C, Schone C, Rother M.},
journal = {J Bacteriol},
year = {2024},
doi = {10.1128/jb.00363-23},
pmid = {38305193}
}
@article{lin389922,
title = {Probiotic performance of B. subtilis MS. 45 improves aquaculture of rainbow trout Oncorhynchus mykiss during acute hypoxia stress.},
author = {Neissi A, Majidi Zahed H, Roshan R.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-54380-7},
pmid = {38355704}
}
@article{lin390184,
title = {Bacteria employ lysine acetylation of transcriptional regulators to adapt gene expression to cellular metabolism.},
author = {Kremer M, Schulze S, Eisenbruch N, Nagel F, Vogt R, Berndt L, Dorre B, Palm GJ, Hoppen J, Girbardt B, Albrecht D, Sievers S, Delcea M, Baumann U, Schnetz K, Lammers M.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-46039-8},
pmid = {38395951}
}
@article{lin390060,
title = {The Complete Genome of a Novel Typical Species Thiocapsa bogorovii and Analysis of Its Central Metabolic Pathways.},
author = {Petushkova E, Khasimov M, Mayorova E, Delegan Y, Frantsuzova E, Bogun A, Galkina E, Tsygankov A.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12020391},
pmid = {38399794}
}
@article{lin390056,
title = {Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil.},
author = {Li X, Bei Q, Rabiei Nematabad M, Peng J, Liesack W.},
journal = {Microbiome},
year = {2024},
doi = {10.1186/s40168-023-01739-z},
pmid = {38409166}
}
@article{lin390096,
title = {A non-canonical nucleophile unlocks a new mechanistic pathway in a designed enzyme.},
author = {Hutton AE, Foster J, Crawshaw R, Hardy FJ, Johannissen LO, Lister TM, Gerard EF, Birch-Price Z, Obexer R, Hay S, Green AP.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-46123-z},
pmid = {38438341}
}
@article{lin181468,
title = {Effect of model methanogens on the electrochemical activity, stability, and microbial community structure of Geobacter spp. dominated biofilm anodes.},
author = {Dzofou Ngoumelah D, Heggeset TMB, Haugen T, Sulheim S, Wentzel A, Harnisch F, Kretzschmar J.},
journal = {NPJ Biofilms Microbiomes},
year = {2024},
doi = {10.1038/s41522-024-00490-z},
pmid = {38443373}
}
@article{lin389955,
title = {Ferrihydrite-mediated methanotrophic nitrogen fixation in paddy soil under hypoxia.},
author = {Yu L, Jia R, Liu S, Li S, Zhong S, Liu G, Zeng RJ, Rensing C, Zhou S.},
journal = {ISME Commun},
year = {2024},
doi = {10.1093/ismeco/ycae030},
pmid = {38524761}
}
@article{lin390012,
title = {Structural and mechanistic basis of the central energy-converting methyltransferase complex of methanogenesis.},
author = {Aziz I, Kayastha K, Kaltwasser S, Vonck J, Welsch S, Murphy BJ, Kahnt J, Wu D, Wagner T, Shima S, Ermler U.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2315568121},
pmid = {38530900}
}
@article{lin389789,
title = {PyCoMo: a python package for community metabolic model creation and analysis.},
author = {Predl M, Miesskes M, Rattei T, Zanghellini J.},
journal = {Bioinformatics},
year = {2024},
doi = {10.1093/bioinformatics/btae153},
pmid = {38532295}
}
@article{lin389880,
title = {Deciphering Microbial Communities and Distinct Metabolic Pathways in the Tangyin Hydrothermal Fields of Okinawa Trough through Metagenomic and Genomic Analyses.},
author = {Li J, Cheng H, Yin F, Liu J, Zhang XH, Yu M.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12030517},
pmid = {38543568}
}
@article{lin390041,
title = {Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem.},
author = {Lindsay MR, D'Angelo T, Munson-McGee JH, Saidi-Mehrabad A, Devlin M, McGonigle J, Goodell E, Herring M, Lubelczyk LC, Mascena C, Brown JM, Gavelis G, Liu J, Yousavich DJ, Hamilton-Brehm SD, Hedlund BP, Lang S, Treude T, Poulton NJ, Stepanauskas R, Moser DP, Emerson D, Orcutt BN.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2309636121},
pmid = {38573964}
}
@article{lin389809,
title = {An evolved pyrrolysyl-tRNA synthetase with polysubstrate specificity expands the toolbox for engineering enzymes with incorporation of noncanonical amino acids.},
author = {Liu K, Jiang L, Ma S, Song Z, Wang L, Zhang Q, Xu R, Yang L, Wu J, Yu H.},
journal = {Bioresour Bioprocess},
year = {2023},
doi = {10.1186/s40643-023-00712-w},
pmid = {38647798}
}
@article{lin389906,
title = {Enhancing biogas production from palm oil mill effluent through the synergistic application of surfactants and iron supplements.},
author = {Mekwichai P, Chutivisut P, Tuntiwiwattanapun N.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e29617},
pmid = {38660277}
}
@article{lin389795,
title = {Deciphering the microbial communities of alkaline hot spring in Panamik, Ladakh, India using a high-throughput sequencing approach.},
author = {Choudhary G, Kumari S, Anu K, Devi S.},
journal = {Braz J Microbiol},
year = {2024},
doi = {10.1007/s42770-024-01346-6},
pmid = {38662153}
}
@article{lin389925,
title = {Electronic isomerism in a heterometallic nickel-iron-sulfur cluster models substrate binding and cyanide inhibition of carbon monoxide dehydrogenase.},
author = {Lewis LC, Sanabria-Gracia JA, Lee Y, Jenkins AJ, Shafaat HS.},
journal = {Chem Sci},
year = {2024},
doi = {10.1039/d4sc00023d},
pmid = {38665523}
}
@article{lin389887,
title = {Click Chemistry with Cell-Permeable Fluorophores Expands the Choice of Bioorthogonal Markers for Two-Color Live-Cell STED Nanoscopy.},
author = {Gregor C, Grimm F, Rehman J, Wurm CA, Egner A.},
journal = {Cells},
year = {2024},
doi = {10.3390/cells13080683},
pmid = {38667298}
}
@article{lin181554,
title = {Resonance Raman analysis of intracellular vitamin B12 analogs in methanogenic archaea.},
author = {Kanno N, Kato S, Itoh T, Ohkuma M, Shigeto S.},
journal = {Anal Sci Adv},
year = {2022},
doi = {10.1002/ansa.202100042},
pmid = {38716123}
}
@article{lin389857,
title = {Transcriptomic evidence for an energetically advantageous relationship between Syntrophomonas wolfei and Methanothrix soehngenii.},
author = {Besteman MS, Doloman A, Sousa DZ.},
journal = {Environ Microbiol Rep},
year = {2024},
doi = {10.1111/1758-2229.13276},
pmid = {38733087}
}
@article{lin389948,
title = {Short-term dietary fiber interventions produce consistent gut microbiome responses across studies.},
author = {Rodriguez CI, Isobe K, Martiny JBH.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00133-24},
pmid = {38742890}
}
@article{lin389833,
title = {Mutational and structural studies of (betaalpha)8-barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism.},
author = {Gehl M, Demmer U, Ermler U, Shima S.},
journal = {Protein Sci},
year = {2024},
doi = {10.1002/pro.5018},
pmid = {38747406}
}
@article{lin389995,
title = {Dual-mode harvest solar energy for photothermal Cu2-xSe biomineralization and seawater desalination by biotic-abiotic hybrid.},
author = {Gong SL, Tian Y, Sheng GP, Tian LJ.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-48660-z},
pmid = {38778052}
}
@article{lin389810,
title = {Development of orthogonal aminoacyl-tRNA synthetase mutant for incorporating a non-canonical amino acid.},
author = {Lee D, Kim JG, Kim TW, Choi JI.},
journal = {AMB Express},
year = {2024},
doi = {10.1186/s13568-024-01706-3},
pmid = {38782816}
}
@article{lin389978,
title = {Electron Transfer in the Biogeochemical Sulfur Cycle.},
author = {Zhuang X, Wang S, Wu S.},
journal = {Life (Basel)},
year = {2024},
doi = {10.3390/life14050591},
pmid = {38792612}
}
@article{lin389954,
title = {Activation of GPR55 Ameliorates Maternal Separation-Induced Learning and Memory Deficits by Augmenting 5-HT Synthesis in the Dorsal Raphe Nucleus of Juvenile Mice.},
author = {Sun T, Du YY, Zhang YQ, Tian QQ, Li X, Yu JY, Guo YY, Liu QQ, Yang L, Wu YM, Yang Q, Zhao MG.},
journal = {ACS Omega},
year = {2024},
doi = {10.1021/acsomega.3c08934},
pmid = {38799363}
}
@article{lin389920,
title = {Incorporation of Multiple beta2-Hydroxy Acids into a Protein In Vivo Using an Orthogonal Aminoacyl-tRNA Synthetase.},
author = {Hamlish NX, Abramyan AM, Shah B, Zhang Z, Schepartz A.},
journal = {ACS Cent Sci},
year = {2024},
doi = {10.1021/acscentsci.3c01366},
pmid = {38799653}
}
@article{lin181461,
title = {The novel regulator HdrR controls the transcription of the heterodisulfide reductase operon hdrBCA in Methanosarcina barkeri.},
author = {Zhang S, Chen Y, Wang S, Yang Q, Leng H, Zhao P, Guo L, Dai L, Bai L, Cha G.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.00691-24},
pmid = {38809047}
}
@article{lin181467,
title = {Different outer membrane c-type cytochromes are involved in direct interspecies electron transfer to Geobacter or Methanosarcina species.},
author = {Holmes DE, Zhou J, Smith JA, Wang C, Liu X, Lovley DR.},
journal = {mLife},
year = {2022},
doi = {10.1002/mlf2.12037},
pmid = {38818222}
}
@article{lin389827,
title = {An efficient pyrrolysyl-tRNA synthetase for economical production of MeHis-containing enzymes.},
author = {Hutton AE, Foster J, Sanders JEJ, Taylor CJ, Hoffmann SA, Cai Y, Lovelock SL, Green AP.},
journal = {Faraday Discuss},
year = {2024},
doi = {10.1039/d4fd00019f},
pmid = {38847587}
}
@article{lin389967,
title = {Identification of two archaeal GDGT lipid-modifying proteins reveals diverse microbes capable of GMGT biosynthesis and modification.},
author = {Garcia AA, Chadwick GL, Liu XL, Welander PV.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2318761121},
pmid = {38885389}
}
@article{lin389829,
title = {Physiological and transcriptomic response to methyl-coenzyme M reductase limitation in Methanosarcina acetivorans.},
author = {Chadwick GL, Dury GA, Nayak DD.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.02220-23},
pmid = {38916294}
}
@article{lin389935,
title = {Redirecting electron flow in Acetobacterium woodii enables growth on CO and improves growth on formate.},
author = {Moon J, Poehlein A, Daniel R, Muller V.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-49680-5},
pmid = {38926344}
}
@article{lin390445,
title = {Noncanonical Amino Acids in Biocatalysis.},
author = {Birch-Price Z, Hardy FJ, Lister TM, Kohn AR, Green AP.},
journal = {Chem Rev},
year = {2024},
doi = {10.1021/acs.chemrev.4c00120},
pmid = {38959423}
}
@article{lin181465,
title = {Methanogenesis in the presence of oxygenic photosynthetic bacteria may contribute to global methane cycle.},
author = {Ye J, Zhuang M, Hong M, Zhang D, Ren G, Hu A, Yang C, He Z, Zhou S.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-50108-3},
pmid = {38971854}
}
@article{lin389969,
title = {Thg1 family 3'-5' RNA polymerases as tools for targeted RNA synthesis.},
author = {Jayasinghe MI, Patel KJ, Jackman JE.},
journal = {RNA},
year = {2024},
doi = {10.1261/rna.080156.124},
pmid = {38997129}
}
@article{lin181483,
title = {Electron bifurcation and fluoride efflux systems implicated in defluorination of perfluorinated unsaturated carboxylic acids by Acetobacterium spp.},
author = {Yu Y, Xu F, Zhao W, Thoma C, Che S, Richman JE, Jin B, Zhu Y, Xing Y, Wackett L, Men Y.},
journal = {Sci Adv},
year = {2024},
doi = {10.1126/sciadv.ado2957},
pmid = {39018407}
}
@article{lin389776,
title = {Impact of mineral and non-mineral sources of iron and sulfur on the metalloproteome of Methanosarcina barkeri.},
author = {Larson J, Tokmina-Lukaszewska M, Payne D, Spietz RL, Fausset H, Alam MG, Brekke BK, Pauley J, Hasenoehrl EJ, Shepard EM, Boyd ES, Bothner B.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.00516-24},
pmid = {39023267}
}
@article{lin389836,
title = {Methanomethylovorans are the dominant dimethylsulfide-degrading methanogens in gravel and sandy river sediment microcosms.},
author = {Tsola SL, Prevodnik AA, Sinclair LF, Sanders IA, Economou CK, Eyice O.},
journal = {Environ Microbiome},
year = {2024},
doi = {10.1186/s40793-024-00591-4},
pmid = {39033282}
}
@article{lin389774,
title = {Non-conductive silicon-containing materials improve methane production by pure cultures of methanogens.},
author = {Braga CSN, Martins G, Soares OSGP, Pereira MFR, Pereira IAC, Pereira L, Alves MM, Salvador AF.},
journal = {Bioresour Technol},
year = {2024},
doi = {10.1016/j.biortech.2024.131144},
pmid = {39043281}
}
@article{lin389824,
title = {Effects of temperature, chloride and perchlorate salt concentration on the metabolic activity of Deinococcus radiodurans.},
author = {Symeonidou E, Jorgensen UG, Madsen MB, Prieme A.},
journal = {Extremophiles},
year = {2024},
doi = {10.1007/s00792-024-01351-5},
pmid = {39044042}
}
@article{lin389766,
title = {Solar-Driven Methanogenesis through Microbial Ecosystem Engineering on Carbon Nitride.},
author = {Kalathil S, Rahaman M, Lam E, Augustin TL, Greer HF, Reisner E.},
journal = {Angew Chem Int Ed Engl},
year = {2024},
doi = {10.1002/anie.202409192},
pmid = {39091276}
}
@article{lin389786,
title = {The robustness of porin-cytochrome gene clusters from Geobacter metallireducens in extracellular electron transfer.},
author = {Zhuo S, Jiang Y, Qi L, Hu Y, Jiang Z, Dong Y, Shi L.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.00580-24},
pmid = {39092920}
}
@article{lin389817,
title = {Genome reduction in novel, obligately methyl-reducing Methanosarcinales isolated from arthropod guts (Methanolapillus gen. nov. and Methanimicrococcus).},
author = {Protasov E, Reeh H, Liu P, Poehlein A, Platt K, Heimerl T, Herve V, Daniel R, Brune A.},
journal = {FEMS Microbiol Ecol},
year = {2024},
doi = {10.1093/femsec/fiae111},
pmid = {39108084}
}
@article{lin389822,
title = {An unnatural amino acid dependent, conditional Pseudomonas vaccine prevents bacterial infection.},
author = {Pigula M, Lai YC, Koh M, Diercks CS, Rogers TF, Dik DA, Schultz PG.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-50843-7},
pmid = {39117651}
}
@article{lin389837,
title = {Trapping the substrate radical of heme synthase AhbD.},
author = {Heidinger L, Fix I, Friedrich T, Layer G.},
journal = {Front Chem},
year = {2024},
doi = {10.3389/fchem.2024.1430796},
pmid = {39119521}
}
@article{lin389839,
title = {Understanding the sources, function, and irreplaceable role of cobamides in organohalide-respiring bacteria.},
author = {Lu Y, Lu F, Zhang J, Tang Q, Yang D, Liu Y.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1435674},
pmid = {39139376}
}
@article{lin389899,
title = {Genetic Code Expansion in Shewanella oneidensis MR-1 Allows Site-Specific Incorporation of Bioorthogonal Functional Groups into a c-Type Cytochrome.},
author = {Lockwood CWJ, Nash BW, Newton-Payne SE, van Wonderen JH, Whiting KPS, Connolly A, Sutton-Cook AL, Crook A, Aithal AR, Edwards MJ, Clarke TA, Sachdeva A, Butt JN.},
journal = {ACS Synth Biol},
year = {2024},
doi = {10.1021/acssynbio.4c00248},
pmid = {39158169}
}
@article{lin389979,
title = {Phylogenetic diversity of putative nickel-containing carbon monoxide dehydrogenase-encoding prokaryotes in the human gut microbiome.},
author = {Katayama YA, Kamikawa R, Yoshida T.},
journal = {Microb Genom},
year = {2024},
doi = {10.1099/mgen.0.001285},
pmid = {39166974}
}
@article{lin389847,
title = {Engineering a non-oxidative glycolysis pathway in escherichia coli for high-level citramalate production.},
author = {Wang T, Ding L, Luo H, Huang H, Su X, Bai Y, Tu T, Wang Y, Qin X, Zhang H, Wang Y, Yao B, Zhang J, Wang X.},
journal = {Microb Cell Fact},
year = {2024},
doi = {10.1186/s12934-024-02505-y},
pmid = {39174991}
}
@article{lin390122,
title = {Cellular Site-Specific Incorporation of Noncanonical Amino Acids in Synthetic Biology.},
author = {Niu W, Guo J.},
journal = {Chem Rev},
year = {2024},
doi = {10.1021/acs.chemrev.3c00938},
pmid = {39207844}
}
@article{lin389803,
title = {Structural organization of pyruvate: ferredoxin oxidoreductase from the methanogenic archaeon Methanosarcina acetivorans.},
author = {Cossu M, Catlin D, Elliott SJ, Metcalf WW, Nair SK.},
journal = {Structure},
year = {2024},
doi = {10.1016/j.str.2024.08.011},
pmid = {39265575}
}
@article{lin390037,
title = {MecE, MecB, and MecC proteins orchestrate methyl group transfer during dichloromethane fermentation.},
author = {Soder-Walz JM, Deobald D, Vicent T, Marco-Urrea E, Adrian L.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.00978-24},
pmid = {39320083}
}
@article{lin389768,
title = {Enhanced Extracellular Electron Transfer in Magnetite-Mediated Anaerobic Oxidation of Methane Coupled to Humic Substances Reduction: The Pivotal Role of Membrane-Bound Electron Transfer Proteins.},
author = {Liang L, Jin Z, Tao Y, Li Y, Zhao Z, Zhang Y.},
journal = {Environ Sci Technol},
year = {2024},
doi = {10.1021/acs.est.4c05543},
pmid = {39323212}
}
@article{lin389825,
title = {Capturing a methanogenic carbon monoxide dehydrogenase/acetyl-CoA synthase complex via cryogenic electron microscopy.},
author = {Biester A, Grahame DA, Drennan CL.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2410995121},
pmid = {39361653}
}
@article{lin389980,
title = {Simple Porifera holobiont reveals complex interactions between the host, an archaeon, a bacterium, and a phage.},
author = {Garritano AN, Zhang Z, Jia Y, Allen MA, Hill LJ, Kuzhiumparambil U, Hinkley C, Raina JB, Peixoto RS, Thomas T.},
journal = {ISME J},
year = {2024},
doi = {10.1093/ismejo/wrae197},
pmid = {39375020}
}
@article{lin389771,
title = {Natural AIEgens as Ultraviolet Sunscreens and Photosynergists for Solar Fuel Production.},
author = {Gu W, Hu J, Li L, Hong M, Yang C, Ren G, Ye J, Zhou S.},
journal = {Environ Sci Technol},
year = {2024},
doi = {10.1021/acs.est.4c05605},
pmid = {39390730}
}
@article{lin389821,
title = {Sulfur-tetrazine as highly efficient visible-light activatable photo-trigger for designing photoactivatable fluorescence biomolecules.},
author = {Yang S, Zhang M, Loredo A, Soares D, Wu Y, Xiao H.},
journal = {J Mater Chem B},
year = {2024},
doi = {10.1039/d4tb01817f},
pmid = {39420843}
}
@article{lin389868,
title = {Comprehensive gut microbiota composition and microbial interactions among the three age groups.},
author = {Ma J, Yang X, He J.},
journal = {PLoS One},
year = {2024},
doi = {10.1371/journal.pone.0305583},
pmid = {39423213}
}
@article{lin181473,
title = {Ethane-oxidising archaea couple CO2 generation to F420 reduction.},
author = {Lemaire ON, Wegener G, Wagner T.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-53338-7},
pmid = {39433727}
}
@article{lin389762,
title = {Enrichment of Methanothrix species via riboflavin-loaded granular activated carbon in anaerobic digestion of high-concentration brewery wastewater amidst continuous inoculation of Methanosarcina barkeri.},
author = {He H, Zeng Y, Dong H, Cui P, Lu W, Xu H, Qiu B, Sun D, Ma J, Dang Y.},
journal = {Water Res},
year = {2025},
doi = {10.1016/j.watres.2024.122739},
pmid = {39504698}
}
@article{lin389930,
title = {Compiling a versatile toolbox for inducible gene expression in Methanosarcina mazei.},
author = {Huttermann J, Schmitz R.},
journal = {Microlife},
year = {2024},
doi = {10.1093/femsml/uqae019},
pmid = {39524023}
}
@article{lin389988,
title = {CalDAG-GEFI acts as a guanine nucleotide exchange factor for LRRK2 to regulate LRRK2 function and neurodegeneration.},
author = {Liu Q, Huang B, Guiberson NGL, Chen S, Zhu D, Ma G, Ma XM, Crittenden JR, Yu J, Graybiel AM, Dawson TM, Dawson VL, Xiong Y.},
journal = {Sci Adv},
year = {2024},
doi = {10.1126/sciadv.adn5417},
pmid = {39576856}
}
@article{lin389761,
title = {Humin accelerates interspecies electron transfer between Shewanella oneidensis MR-1 and Methanosarcina barkeri.},
author = {Zhou N, Chen D, Xiao Z.},
journal = {Sci Total Environ},
year = {2024},
doi = {10.1016/j.scitotenv.2024.177643},
pmid = {39577578}
}
@article{lin389915,
title = {Isolation and characterization of a novel methanogen Methanosarcina hadiensis sp. nov. from subsurface Boom Clay pore water.},
author = {Gimenez FJ, Peeters E, Honty M, Leys N, Mijnendonckx K.},
journal = {Environ Microbiol},
year = {2024},
doi = {10.1111/1462-2920.70004},
pmid = {39627874}
}
@article{lin389873,
title = {Acetate Shock Loads Enhance CO Uptake Rates of Anaerobic Microbiomes.},
author = {Robazza A, Raya I Garcia A, Baleeiro FCF, Kleinsteuber S, Neumann A.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.70063},
pmid = {39651844}
}
@article{lin389769,
title = {Evolutionary Transitions of DNA Replication Origins Between Archaea and Bacteria.},
author = {Saranya S, Prathiviraj R, Chellapandi P.},
journal = {J Basic Microbiol},
year = {2025},
doi = {10.1002/jobm.202400527},
pmid = {39663550}
}
@article{lin389787,
title = {Accelerated enumeration of extreme rays through a positive-definite elementarity test.},
author = {Mores W, Bhonsale SS, Logist F, Van Impe JFM.},
journal = {Bioinformatics},
year = {2024},
doi = {10.1093/bioinformatics/btae723},
pmid = {39705166}
}
@article{lin389865,
title = {Genetic and biochemical characterization of a radical SAM enzyme required for post-translational glutamine methylation of methyl-coenzyme M reductase.},
author = {Rodriguez Carrero RJ, Lloyd CT, Borkar J, Nath S, Mirica LM, Nair S, Booker SJ, Metcalf W.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.03546-24},
pmid = {39772843}
}
@article{lin389813,
title = {Predicting the polyspecificity of aminoacyl-tRNA synthetase for non-canonical amino acids using molecular dynamics simulation and MM/PBSA.},
author = {Lee D, Choi JI.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0316907},
pmid = {39792834}
}
@article{lin389767,
title = {Liquid Metal Nanobiohybrids for High-Performance Solar-Driven Methanogenesis via Multi-Interface Engineering.},
author = {Gu W, Hu J, Li L, Hong M, Zhang D, Chen J, Ye J, Zhou S.},
journal = {Angew Chem Int Ed Engl},
year = {2025},
doi = {10.1002/anie.202423336},
pmid = {39825039}
}
@article{lin389828,
title = {Structure and metabolic function of spatiotemporal pit mud microbiome.},
author = {Li Z, Zhao C, Mao Z, Zhang F, Dong L, Song C, Chen Y, Fu X, Ao Z, Xiong Y, Hui Q, Song W, Penttinen P, Zhang S.},
journal = {Environ Microbiome},
year = {2025},
doi = {10.1186/s40793-025-00668-8},
pmid = {39833926}
}
@article{lin389773,
title = {Hydrogenotrophic methanogenesis at 7-12 mbar by Methanosarcina barkeri under simulated martian atmospheric conditions.},
author = {Harris RL, Schuerger AC.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-86145-1},
pmid = {39843490}
}
@article{lin389814,
title = {Pyrrolysine Aminoacyl-tRNA Synthetase as a Tool for Expanding the Genetic Code.},
author = {Dakhnevich A, Kazakova A, Iliushin D, Ivanov RA.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms26020539},
pmid = {39859254}
}
@article{lin389763,
title = {Nature AND nurture: enabling formate-dependent growth in Methanosarcina acetivorans.},
author = {Bao J, Somvanshi T, Tian Y, Laird MG, Garcia PS, Schone C, Rother M, Borrel G, Scheller S.},
journal = {FEBS J},
year = {2025},
doi = {10.1111/febs.17409},
pmid = {39887878}
}
@article{lin389924,
title = {Substrate Trapping in Polyketide Synthase Thioesterase Domains: Structural Basis for Macrolactone Formation.},
author = {McCullough TM, Choudhary V, Akey DL, Skiba MA, Bernard SM, Kittendorf JD, Schmidt JJ, Sherman DH, Smith JL.},
journal = {ACS Catal},
year = {2024},
doi = {10.1021/acscatal.4c03637},
pmid = {39927088}
}
@article{lin389808,
title = {Metagenomic Analysis of Surface Waters and Wastewater in the Colombian Andean Highlands: Implications for Health and Disease.},
author = {Urrea V, Paez-Triana L, Velasquez-Ortiz N, Camargo M, Patino LH, Vega L, Ballesteros N, Hidalgo-Troya A, Galeano LA, Ramirez JD, Munoz M.},
journal = {Curr Microbiol},
year = {2025},
doi = {10.1007/s00284-024-04019-7},
pmid = {40021498}
}
@article{lin389764,
title = {Microbial adhesion behavior and participation of adhered and planktonic microorganisms in anaerobic digestion of leaf, epidermis, pith from corn stalk.},
author = {Wang L, Xu J, Li C, Hu X, Song C, Liu G, Chen C.},
journal = {Bioresour Technol},
year = {2025},
doi = {10.1016/j.biortech.2025.132346},
pmid = {40044053}
}
@article{lin389944,
title = {Bio-electrosynthesis of polyhydroxybutyrate and surfactants in microbial fuel cells: a preliminary study.},
author = {Nastro RA, Kuppam C, Toscanesi M, Trifuoggi M, Pietrelli A, Pasquale V, Avignone-Rossa C.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1372302},
pmid = {40071206}
}
@article{lin389933,
title = {Noncanonical amino acids as prophage inducers for protein regulation in bacteria-based delivery systems.},
author = {Liu H, Shen S, Xu Q, Wang Y, Qi K, Lu B, Tang B, Wu M, Gan F.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.03988-24},
pmid = {40084898}
}
@article{lin389844,
title = {One-pot dual protein labeling for simultaneous mechanical and fluorescent readouts in optical tweezers.},
author = {Silbermann LM, Fottner M, van der Meulen R, Migdad N, Lang K, Tych K.},
journal = {Protein Sci},
year = {2025},
doi = {10.1002/pro.70098},
pmid = {40099877}
}
@article{lin389811,
title = {The inclusion of insect meal from Hermetia illucens larvae in the diet of laying hens (Hy-line Brown) affects the caecal diversity of methanogenic archaea.},
author = {Mahayri TM, Mrazek J, Bovera F, Piccolo G, Murgia GA, Moniello G, Fliegerova KO.},
journal = {Poult Sci},
year = {2025},
doi = {10.1016/j.psj.2025.105037},
pmid = {40120250}
}
@article{lin389913,
title = {Metagenomic Exploration Uncovers Several Novel 'Candidatus' Species Involved in Acetate Metabolism in High-Ammonia Thermophilic Biogas Processes.},
author = {Cheng GB, Bongcam-Rudloff E, Schnurer A.},
journal = {Microb Biotechnol},
year = {2025},
doi = {10.1111/1751-7915.70133},
pmid = {40126889}
}
@article{lin389777,
title = {Metagenomic and physicochemical profiling reveal microbial functions in pit mud for Jiang-Nong Jianxiang Baijiu fermentation.},
author = {Cao L, Sun H, Xu Z, Xu X, Shi G, Zhang J, Liang C, Li T, Liu C, Wang M, Tian S, Li E.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-03884-x},
pmid = {40175903}
}
@article{lin389861,
title = {Powering the Future: Unveiling the Secrets of Semiconductor Biointerfaces in Biohybrids for Semiartificial Photosynthesis.},
author = {Burns C, Gibson EA, Fuller L, Kalathil S.},
journal = {Artif Photosynth},
year = {2025},
doi = {10.1021/aps.4c00008},
pmid = {40200990}
}
@article{lin389860,
title = {Peripheral CD4+ T cells mediate the destructive effects of maternal separation on prefrontal myelination and cognitive functions.},
author = {Xiong R, Hu Y, Wang M, Han T, Hu Y, Ma C, Li B.},
journal = {Proc Natl Acad Sci U S A},
year = {2025},
doi = {10.1073/pnas.2412995122},
pmid = {40238461}
}
@article{lin389891,
title = {Bilayer-Forming Lipids Enhance Archaeal Monolayer Membrane Stability.},
author = {Saracco M, Schaeffer P, Tourte M, Albers SV, Louis Y, Peters J, Deme B, Fontanay S, Oger PM.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms26073045},
pmid = {40243703}
}
@article{lin389765,
title = {Chemical mechanisms of biogas production from wastewater algal biomass via cobalt-catalysed pyrolysis and methanogenic co-digestion.},
author = {Zuo N, He J, Tan X.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0321364},
pmid = {40327643}
}
@article{lin389942,
title = {Efficient and selective energy transfer photoenzymes powered by visible light.},
author = {Crawshaw R, Smithson R, Hofer J, Hardy FJ, Roberts GW, Trimble JS, Kohn AR, Levy CW, Drost DA, Merten C, Heyes DJ, Obexer R, Bach T, Green AP.},
journal = {Nat Chem},
year = {2025},
doi = {10.1038/s41557-025-01820-0},
pmid = {40329013}
}
@article{lin389819,
title = {ModE Regulates Alternative Nitrogenase Expression in the Methanogen Methanosarcina acetivorans.},
author = {Chanderban M, Lessner DJ.},
journal = {Mol Microbiol},
year = {2025},
doi = {10.1111/mmi.15377},
pmid = {40353477}
}
@article{lin389853,
title = {Non-Respiratory Extracellular Electron Transfer Competes with Nitrogenase for Electrons in Rhodopseudomonas Palustris.},
author = {Liu X, Qi P, Fan W, Liu W, Li X, Nie Y, Wu XL.},
journal = {Adv Sci (Weinh)},
year = {2025},
doi = {10.1002/advs.202501376},
pmid = {40367360}
}
@article{lin389897,
title = {Triple Labeling Resolves a GPCR Intermediate State by Using Three-Color Single Molecule FRET.},
author = {Bonhomme L, Bilgen E, Clerte C, Pin JP, Rondard P, Margeat E, Lamb DC, Quast RB.},
journal = {J Am Chem Soc},
year = {2025},
doi = {10.1021/jacs.4c18364},
pmid = {40373293}
}
@article{lin390136,
title = {Recent Progress in Designing Nanomaterial Biohybrids for Artificial Photosynthesis.},
author = {Jeevanandham S, Ramasundaram S, Vijay N, Oh TH, Selvan ST.},
journal = {Nanomaterials (Basel)},
year = {2025},
doi = {10.3390/nano15100730},
pmid = {40423120}
}
@article{lin389983,
title = {Identification of key steps in the evolution of anaerobic methanotrophy in Candidatus Methanovorans (ANME-3) archaea.},
author = {Woods PH, Speth DR, Laso-Perez R, Utter DR, Ruff SE, Orphan VJ.},
journal = {Sci Adv},
year = {2025},
doi = {10.1126/sciadv.adq5232},
pmid = {40540566}
}
@article{lin389928,
title = {Expanded Diversity of Microbial Groups Capable of Anaerobic Pyrite Reduction and Assimilation of Dissolution Products.},
author = {Boyd ES, Payne D.},
journal = {Environ Microbiol},
year = {2025},
doi = {10.1111/1462-2920.70125},
pmid = {40544867}
}
@article{lin389770,
title = {Activated Carbon and Syntrophy Accelerate the Corrosion of Stainless Steel Under Strict Anaerobic Conditions by Methanosarcina barkeri.},
author = {Zhou C, Huang S, Li H, Dong H, Zhang H, Chen W, Dang Y.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13061278},
pmid = {40572165}
}
@article{lin389778,
title = {Methylations with methanol via bioinspired catalytic C-O bond cleavage.},
author = {Huang Q, Xiang Y, Wu Y, Zheng Y, Liao RZ, Xie Y.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-61200-7},
pmid = {40592918}
}
@article{lin389802,
title = {Effects of soil texture on microbial community composition and abundance under alternate wetting and drying in paddy soils of central Thailand.},
author = {Arunrat N, Sereenonchai S, Uttarotai T.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-09843-w},
pmid = {40619541}
}
@article{lin389815,
title = {A Genetically Encoded Homocysteine Precursor to Probe Protein Active Sites and to Addict Escherichia coli to a Noncanonical Amino Acid Directly Involved in Catalysis.},
author = {Dunker C, Mootz HD.},
journal = {Angew Chem Int Ed Engl},
year = {2025},
doi = {10.1002/anie.202509112},
pmid = {40627695}
}
@article{lin389957,
title = {Machine learning-guided evolution of pyrrolysyl-tRNA synthetase for improved incorporation efficiency of diverse noncanonical amino acids.},
author = {Zhang Q, Jiang L, Niu Y, Li Y, Chen W, Cheng J, Ding H, Chen B, Liu K, Cao J, Wang J, Ye S, Yang L, Wu J, Xu G, Lin J, Yu H.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-61952-2},
pmid = {40681550}
}
@article{lin389909,
title = {Cultivation and metabolic versatility of novel and ubiquitous chemolithoautotrophic Campylobacteria from mangrove sediments.},
author = {Cui L, Zhong Y, Li Y, Sievert SM, Huang Z, Wang W, Rubin-Blum M, Cao X, Wang Y, Shao Z, Lai Q, Wang S, Jiang L.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.00367-25},
pmid = {40698828}
}
@article{lin389854,
title = {Magnetite drives microbial community restructuring and stimulates aceticlastic methanogenesis of type II Methanosarcina in mangrove sediments.},
author = {Zhou J, Zhang CJ, Zou D, Gu C, Li M.},
journal = {Microbiome},
year = {2025},
doi = {10.1186/s40168-025-02157-z},
pmid = {40713905}
}
@article{lin389818,
title = {Isotopologue Ratios Identify 13C-Depleted Biomarkers in Environmental Samples Impacted by Methane Turnover.},
author = {Groninga J, Lipp J, Song M, Hinrichs KU.},
journal = {Rapid Commun Mass Spectrom},
year = {2025},
doi = {10.1002/rcm.10118},
pmid = {40762245}
}
@article{lin389941,
title = {Harnessing Engineered Microbial Consortia for Xenobiotic Bioremediation: Integrating Multi-Omics and AI for Next-Generation Wastewater Treatment.},
author = {Renganathan P, Gaysina LA, Garcia Gutierrez C, Rueda Puente EO, Sainz-Hernandez JC.},
journal = {J Xenobiot},
year = {2025},
doi = {10.3390/jox15040133},
pmid = {40863340}
}
@article{lin389862,
title = {Phylogenetically and metabolically diverse active carbon-fixing microbes reside in mangrove sediments.},
author = {Wang S, Zhao Z, Cheng R, Cui L, Wang J, Rubin-Blum M, Zhang Y, Liu B, Chen X, Baltar F, Cao X, Wen X, Alain K, Chen Z, Liao J, Jiang L, Shao Z.},
journal = {Microbiome},
year = {2025},
doi = {10.1186/s40168-025-02177-9},
pmid = {40890888}
}
@article{lin389791,
title = {Enhancement of direct interspecies electron transfer and methane production by co-culture of dual Methanosarcina species and Geobacter metallireducens.},
author = {Liu L, Li P, Dong H, Liu C, Li H, Ma Z, Li R, Dang Y.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1604265},
pmid = {40895471}
}
@article{lin389843,
title = {Modeling reveals a metabolic basis of competition among Dehalobacter strains during tandem chloroform and dichloromethane metabolism.},
author = {Bulka O, Edwards EA, Mahadevan R.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00847-25},
pmid = {40910777}
}
@article{lin389848,
title = {Genetic code expansion and enzymatic modifications as accessible methods for studying site-specific post-translational modifications of alpha-synuclein and tau.},
author = {Saleh IG, Shimogawa M, Ramirez J, Abakah B, Venkatesh Y, James HP, Li MH, Louie SA, Lougee MG, Chia WK, Brue C, Cooley RB, Mehl RA, Baumgart T, Mach RH, Eliezer D, Rhoades E, Petersson EJ.},
journal = {Protein Sci},
year = {2025},
doi = {10.1002/pro.70302},
pmid = {40944447}
}
@article{lin389883,
title = {Branched DNA processing by a thermostable CAS-Cas4 from Thermococcus onnurineus: Expanding biochemical landscape of nuclease activity.},
author = {Jain M, Pattnayak AK, Aggarwal S, Rai P, Kavya J, Chandrayan S, Goel M, Gaur V.},
journal = {J Biol Chem},
year = {2025},
doi = {10.1016/j.jbc.2025.110701},
pmid = {40945731}
}
@article{lin389790,
title = {Methanosarcina acetivorans requires methanol:coenzyme M methyltransferases for ethane formation from ethanol.},
author = {Somvanshi T, Tran MA, Bao J, Scheller S.},
journal = {Antonie Van Leeuwenhoek},
year = {2025},
doi = {10.1007/s10482-025-02165-x},
pmid = {40974455}
}
@article{lin389840,
title = {A robust platform streamlining aromatic noncanonical amino acid biosynthesis and genetic code expansion in Escherichia coli.},
author = {Zhang J, Yu K, Xu Y, Zhao W, Li Y, Wang Y, Seebeck FP, Chen XH, Liao C.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-63679-6},
pmid = {41022877}
}
@article{lin389797,
title = {Structural and Spectroscopic Insights into Catalytic Intermediates of a [NiFe]-hydrogenase from Group 3.},
author = {Jespersen M, Lorent C, Lemaire ON, Zebger I, Wagner T.},
journal = {Chembiochem},
year = {2025},
doi = {10.1002/cbic.202500692},
pmid = {41078086}
}
@article{lin389931,
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year = {2025},
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pmid = {41131054}
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title = {Methanogenic archaea encoding Pyrrolysine maintain ambiguous amber codon usage.},
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year = {2025},
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title = {Ultrastructure of Serratia liquefaciens Grown at 7 mbar Under Simulated Martian Conditions.},
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journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13112466},
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