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title = {Effect of acupuncture at Back-Shu points on gut microbiota in insomnia model rats based on metagenomic sequencing technology},
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title = {Inferring Metabolic Mechanisms of Interaction within a Defined Gut Microbiota.},
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title = {Adhesive Interactions Between Lactic Acid Bacteria and beta-Lactoglobulin: Specificity and Impact on Bacterial Location in Whey Protein Isolate.},
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journal = {Front Microbiol},
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doi = {10.3389/fmicb.2019.01512},
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title = {An Integrated Metagenome Catalog Reveals New Insights into the Murine Gut Microbiome.},
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title = {Bile acids drive the newborn's gut microbiota maturation.},
author = {van Best N, Rolle-Kampczyk U, Schaap FG, Basic M, Olde Damink SWM, Bleich A, Savelkoul PHM, von Bergen M, Penders J, Hornef MW.},
journal = {Nat Commun},
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@article{lin360050,
title = {Safety, environmental and technological characterization of beneficial autochthonous lactic bacteria, and their vaginal administration to pregnant cows for the design of homologous multi-strain probiotic formulas.},
author = {Miranda MH, Aristimuno Ficoseco C, Nader-Macias MEF.},
journal = {Braz J Microbiol},
year = {2021},
doi = {10.1007/s42770-021-00608-x},
pmid = {34505225}
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@article{lin360071,
title = {A standardized gnotobiotic mouse model harboring a minimal 15-member mouse gut microbiota recapitulates SOPF/SPF phenotypes.},
author = {Darnaud M, De Vadder F, Bogeat P, Boucinha L, Bulteau AL, Bunescu A, Couturier C, Delgado A, Dugua H, Elie C, Mathieu A, Novotna T, Ouattara DA, Planel S, Saliou A, Srutkova D, Yansouni J, Stecher B, Schwarzer M, Leulier F, Tamellini A.},
journal = {Nat Commun},
year = {2021},
doi = {10.1038/s41467-021-26963-9},
pmid = {34795236}
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@article{lin360074,
title = {The Mouse Gastrointestinal Bacteria Catalogue enables translation between the mouse and human gut microbiotas via functional mapping.},
author = {Beresford-Jones BS, Forster SC, Stares MD, Notley G, Viciani E, Browne HP, Boehmler DJ, Soderholm AT, Kumar N, Vervier K, Cross JR, Almeida A, Lawley TD, Pedicord VA.},
journal = {Cell Host Microbe},
year = {2022},
doi = {10.1016/j.chom.2021.12.003},
pmid = {34971560}
}
@article{lin360060,
title = {Closely related Salmonella Derby strains triggered distinct gut microbiota alteration.},
author = {Yuan X, Xue H, Xu X, Jiao X, Pan Z, Zhang Y.},
journal = {Gut Pathog},
year = {2022},
doi = {10.1186/s13099-022-00480-6},
pmid = {35078518}
}
@article{lin360077,
title = {Extracellular electron transfer increases fermentation in lactic acid bacteria via a hybrid metabolism.},
author = {Tejedor-Sanz S, Stevens ET, Li S, Finnegan P, Nelson J, Knoesen A, Light SH, Ajo-Franklin CM, Marco ML.},
journal = {Elife},
year = {2022},
doi = {10.7554/elife.70684},
pmid = {35147079}
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@article{lin360065,
title = {Efficacy of Probiotic Compounds in Relieving Constipation and Their Colonization in Gut Microbiota.},
author = {He Y, Zhu L, Chen J, Tang X, Pan M, Yuan W, Wang H.},
journal = {Molecules},
year = {2022},
doi = {10.3390/molecules27030666},
pmid = {35163930}
}
@article{lin360038,
title = {Detection of low-mineral- and high-salt responsible caecal indigenous bacteria in ICR mice.},
author = {Xia Y, Kuda T, Nakamura S, Takahashi H, Kimura B.},
journal = {3 Biotech},
year = {2022},
doi = {10.1007/s13205-022-03127-0},
pmid = {35186656}
}
@article{lin360058,
title = {The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut.},
author = {Wong EO, Brownlie EJE, Ng KM, Kathirgamanathan S, Yu FB, Merrill BD, Huang KC, Martin A, Tropini C, Navarre WW.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.02949-21},
pmid = {35266814}
}
@article{lin360067,
title = {Acids produced by lactobacilli inhibit the growth of commensal Lachnospiraceae and S24-7 bacteria.},
author = {Brownlie EJE, Chaharlangi D, Wong EO, Kim D, Navarre WW.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2022.2046452},
pmid = {35266847}
}
@article{lin171133,
title = {Does the Amniotic Fluid of Mice Contain a Viable Microbiota?},
author = {Winters AD, Romero R, Greenberg JM, Galaz J, Shaffer ZD, Garcia-Flores V, Kracht DJ, Gomez-Lopez N, Theis KR.},
journal = {Front Immunol},
year = {2022},
doi = {10.3389/fimmu.2022.820366},
pmid = {35296083}
}
@article{lin359970,
title = {Effects of fructooligosaccharides (FOS) on the composition of cecal and fecal microbiota and the quantitative detection of FOS-metabolizing bacteria using species-specific primers.},
author = {Gu J, Cui S, Tang X, Liu Z, Zhao J, Zhang H, Mao B, Chen W.},
journal = {J Sci Food Agric},
year = {2022},
doi = {10.1002/jsfa.11884},
pmid = {35312198}
}
@article{lin360022,
title = {Comparative Genomic Analysis Reveals Intestinal Habitat Adaptation of Ligilactobacillus equi Rich in Prophage and Degrading Cellulase},
author = {Li Y, Liu C, Liu Q, Liu W.},
journal = {Molecules},
year = {2022},
doi = {10.3390/molecules27061867},
pmid = {35335231}
}
@article{lin360056,
title = {Detection and isolation of typical gut indigenous bacteria in ICR mice fed wheat bran and wheat straw fibre.},
author = {Takei N, Kuda T, Handa N, Fujita S, Takahashi H, Kimura B.},
journal = {Food Chem (Oxf)},
year = {2022},
doi = {10.1016/j.fochms.2021.100071},
pmid = {35415683}
}
@article{lin360064,
title = {The influence of maternal unhealthy diet on maturation of offspring gut microbiota in rat.},
author = {Hasebe K, Kendig MD, Kaakoush NO, Tajaddini A, Westbrook RF, Morris MJ.},
journal = {Anim Microbiome},
year = {2022},
doi = {10.1186/s42523-022-00185-w},
pmid = {35551670}
}
@article{lin360068,
title = {The Impact of Probiotic Supplementation on Cognitive, Pathological and Metabolic Markers in a Transgenic Mouse Model of Alzheimer's Disease.},
author = {Webberley TS, Masetti G, Bevan RJ, Kerry-Smith J, Jack AA, Michael DR, Thomas S, Glymenaki M, Li J, McDonald JAK, John D, Morgan JE, Marchesi JR, Good MA, Plummer SF, Hughes TR.},
journal = {Front Neurosci},
year = {2022},
doi = {10.3389/fnins.2022.843105},
pmid = {35685773}
}
@article{lin360012,
title = {Histone Deacetylase Inhibition by Gut Microbe-Generated Short-Chain Fatty Acids Entrains Intestinal Epithelial Circadian Rhythms.},
author = {Fawad JA, Luzader DH, Hanson GF, Moutinho TJ, McKinney CA, Mitchell PG, Brown-Steinke K, Kumar A, Park M, Lee S, Bolick DT, Medlock GL, Zhao JY, Rosselot AE, Chou CJ, Eshleman EM, Alenghat T, Hong CI, Papin JA, Moore SR.},
journal = {Gastroenterology},
year = {2022},
doi = {10.1053/j.gastro.2022.07.051},
pmid = {35934064}
}
@article{lin360072,
title = {Vertical transmission of the gut microbiota influences glucose metabolism in offspring of mice with hyperglycaemia in pregnancy.},
author = {Xue C, Xie Q, Zhang C, Hu Y, Song X, Jia Y, Shi X, Chen Y, Liu Y, Zhao L, Huang F, Yuan H.},
journal = {Microbiome},
year = {2022},
doi = {10.1186/s40168-022-01318-8},
pmid = {35941695}
}
@article{lin360049,
title = {Resources to Facilitate Use of the Altered Schaedler Flora (ASF) Mouse Model to Study Microbiome Function.},
author = {Proctor A, Parvinroo S, Richie T, Jia X, Lee STM, Karp PD, Paley S, Kostic AD, Pierre JF, Wannemuehler MJ, Phillips GJ.},
journal = {mSystems},
year = {2022},
doi = {10.1128/msystems.00293-22},
pmid = {35968975}
}
@article{lin360063,
title = {D-Tryptophan suppresses enteric pathogen and pathobionts and prevents colitis by modulating microbial tryptophan metabolism.},
author = {Seki N, Kimizuka T, Gondo M, Yamaguchi G, Sugiura Y, Akiyama M, Yakabe K, Uchiyama J, Higashi S, Haneda T, Suematsu M, Hase K, Kim YG.},
journal = {iScience},
year = {2022},
doi = {10.1016/j.isci.2022.104838},
pmid = {35996581}
}
@article{lin359969,
title = {Dietary-protein sources modulate host susceptibility to Clostridioides difficile infection through the gut microbiota.},
author = {Yakabe K, Higashi S, Akiyama M, Mori H, Murakami T, Toyoda A, Sugiyama Y, Kishino S, Okano K, Hirayama A, Gotoh A, Li S, Mori T, Katayama T, Ogawa J, Fukuda S, Hase K, Kim YG.},
journal = {Cell Rep},
year = {2022},
doi = {10.1016/j.celrep.2022.111332},
pmid = {36103838}
}
@article{lin359998,
title = {Identification of bacterial lipopeptides as key players in IBS.},
author = {Petitfils C, Maurel S, Payros G, Hueber A, Agaiz B, Gazzo G, Marrocco R, Auvray F, Langevin G, Motta JP, Floch P, Tremblay-Franco M, Galano JM, Guy A, Durand T, Lachambre S, Durbec A, Hussein H, Decraecker L, Bertrand-Michel J, Saoudi A, Oswald E, Poisbeau P, Dietrich G, Melchior C, Boeckxstaens G, Serino M, Le Faouder P, Cenac N.},
journal = {Gut},
year = {2023},
doi = {10.1136/gutjnl-2022-328084},
pmid = {36241390}
}
@article{lin360042,
title = {Pathway Tools Management of Pathway/Genome Data for Microbial Communities.},
author = {Karp PD, Paley S, Krummenacker M, Kothari A, Wannemuehler MJ, Phillips GJ.},
journal = {Front Bioinform},
year = {2022},
doi = {10.3389/fbinf.2022.869150},
pmid = {36304298}
}
@article{lin360073,
title = {Lactobacillus reuteri tryptophan metabolism promotes host susceptibility to CNS autoimmunity.},
author = {Montgomery TL, Eckstrom K, Lile KH, Caldwell S, Heney ER, Lahue KG, D'Alessandro A, Wargo MJ, Krementsov DN.},
journal = {Microbiome},
year = {2022},
doi = {10.1186/s40168-022-01408-7},
pmid = {36419205}
}
@article{lin360011,
title = {Longitudinal Analysis of the Microbiome and Metabolome in the 5xfAD Mouse Model of Alzheimer's Disease.},
author = {Dunham SJB, McNair KA, Adams ED, Avelar-Barragan J, Forner S, Mapstone M, Whiteson KL.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.01794-22},
pmid = {36468884}
}
@article{lin359960,
title = {Breast Milk-Derived Limosilactobacillus reuteri Prevents Atopic Dermatitis in Mice via Activating Retinol Absorption and Metabolism in Peyer's Patches.},
author = {Qi C, Tu H, Zhao Y, Zhou J, Chen J, Hu H, Yu R, Sun J.},
journal = {Mol Nutr Food Res},
year = {2023},
doi = {10.1002/mnfr.202200444},
pmid = {36480309}
}
@article{lin360055,
title = {Heat-Killed Bifidobacterium bifidum B1628 May Alleviate Dextran Sulfate Sodium-Induced Colitis in Mice, and the Anti-Inflammatory Effect Is Associated with Gut Microbiota Modulation.},
author = {Feng C, Zhang W, Zhang T, He Q, Kwok LY, Tan Y, Zhang H.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14245233},
pmid = {36558391}
}
@article{lin360062,
title = {Orally Administrated Lactiplantibacillus plantarum BGAN8-Derived EPS-AN8 Ameliorates Cd Hazards in Rats.},
author = {Brdaric E, Popovic D, Sokovic Bajic S, Tucovic D, Mutic J, Cakic-Milosevic M, Durdic S, Tolinacki M, Aleksandrov AP, Golic N, Mirkov I, Zivkovic M.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24032845},
pmid = {36769176}
}
@article{lin359971,
title = {Ligilactobacillus murinus Strains Isolated from Mice Intestinal Tract: Molecular Characterization and Antagonistic Activity against Food-Borne Pathogens.},
author = {Sandoval-Mosqueda IL, Llorente-Bousquets A, Soto C, Marquez CM, Fadda S, Del Rio Garcia JC.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11040942},
pmid = {37110365}
}
@article{lin171136,
title = {Identification of food and nutrient components as predictors of Lactobacillus colonization.},
author = {Thompson SC, Ford AL, Moothedan EJ, Stafford LS, Garrett TJ, Dahl WJ, Conesa A, Gonzalez CF, Lorca GL.},
journal = {Front Nutr},
year = {2023},
doi = {10.3389/fnut.2023.1118679},
pmid = {37153913}
}
@article{lin360008,
title = {Diarrhea accompanies intestinal inflammation and intestinal mucosal microbiota dysbiosis during fatigue combined with a high-fat diet.},
author = {Liu J, Qiao B, Cai Y, Tan Z, Deng N.},
journal = {BMC Microbiol},
year = {2023},
doi = {10.1186/s12866-023-02896-9},
pmid = {37231328}
}
@article{lin359979,
title = {A multi-strain probiotic promoted recovery of puppies from gastroenteritis in a randomized, double-blind, placebo-controlled study.},
author = {Molina RA, Villar MD, Miranda MH, Maldonado NC, Vignolo GM, Nader-Macias MEF.},
journal = {Can Vet J},
year = {2023},
pmid = {37397694}
}
@article{lin360039,
title = {In vitro adhesion, pilus expression, and in vivo amelioration of antibiotic-induced microbiota disturbance by Bifidobacterium spp. strains from fecal donors.},
author = {Ronkainen A, Khan I, Krzyzewska-Dudek E, Hiippala K, Freitag TL, Satokari R.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2229944},
pmid = {37401755}
}
@article{lin360053,
title = {Chlamydia muridarum infection causes bronchointerstitial pneumonia in NOD.Cg-PrkdcscidIl2rgtm1Wjl/SzJ (NSG) mice.},
author = {St Jean SC, Ricart Arbona RJ, Mishkin N, Monette S, Wipf JRK, Henderson KS, Cheleuitte-Nieves C, Lipman NS, Carrasco SE.},
journal = {Vet Pathol},
year = {2024},
doi = {10.1177/03009858231183907},
pmid = {37434451}
}
@article{lin360041,
title = {Kombucha tea as an anti-hyperglycemic agent in humans with diabetes - a randomized controlled pilot investigation.},
author = {Mendelson C, Sparkes S, Merenstein DJ, Christensen C, Sharma V, Desale S, Auchtung JM, Kok CR, Hallen-Adams HE, Hutkins R.},
journal = {Front Nutr},
year = {2023},
doi = {10.3389/fnut.2023.1190248},
pmid = {37588049}
}
@article{lin360032,
title = {Understanding Age-Related Longitudinal Dynamics in Abundance and Diversity of Dominant Culturable Gut Lactic Acid Bacteria in Pastured Goats.},
author = {ElHadedy DE, Kim C, Yousuf AB, Wang Z, Ndegwa EN.},
journal = {Animals (Basel)},
year = {2023},
doi = {10.3390/ani13162669},
pmid = {37627460}
}
@article{lin360061,
title = {Equipment and Methods for Concurrently Housing Germfree and Gnotobiotic Mice in the Same Room.},
author = {Muino AF, Compo NR, Everett BM, Abrahams DF, Baldwin MK, James TN, Wanner SE, Perkins MJ, Parr CE, Wiltshire ND, Miedel EL, Engelman RW.},
journal = {J Am Assoc Lab Anim Sci},
year = {2023},
doi = {10.30802/aalas-jaalas-23-000019},
pmid = {37640503}
}
@article{lin360019,
title = {Sarcina sp. as a presumptive cause of fatal acute gastric dilation and gastric emphysema in rhesus macaques.},
author = {Lee LM, Owens LA, Krugner-Higby LA, Graham M, Simmons HA, Climans M, Brown K, Bennett AJ, Schaefer J, Meyer K, Goldberg TL.},
journal = {J Vet Diagn Invest},
year = {2023},
doi = {10.1177/10406387231193965},
pmid = {37646249}
}
@article{lin359954,
title = {Treatment with Ligilactobacillus murinus lowers blood pressure and intestinal permeability in spontaneously hypertensive rats.},
author = {Mukohda M, Yano T, Matsui T, Nakamura S, Miyamae J, Toyama K, Mitsui R, Mizuno R, Ozaki H.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-42377-7},
pmid = {37709803}
}
@article{lin360002,
title = {Understanding the "individual drug reaction" from the perspective of the interaction between probiotics and lovastatin in vitro and in vivo.},
author = {Shen S, Wang J, Ma C, Chen Y, Ding H, Zhang J.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01658-z},
pmid = {37749663}
}
@article{lin171131,
title = {An early-life microbiota metabolite protects against obesity by regulating intestinal lipid metabolism.},
author = {Shelton CD, Sing E, Mo J, Shealy NG, Yoo W, Thomas J, Fitz GN, Castro PR, Hickman TT, Torres TP, Foegeding NJ, Zieba JK, Calcutt MW, Codreanu SG, Sherrod SD, McLean JA, Peck SH, Yang F, Markham NO, Liu M, Byndloss MX.},
journal = {Cell Host Microbe},
year = {2023},
doi = {10.1016/j.chom.2023.09.002},
pmid = {37794592}
}
@article{lin359976,
title = {Renoprotective Effects of Solid-State Cultivated Antrodia cinnamomea in Juvenile Rats with Chronic Kidney Disease.},
author = {Tain YL, Chang-Chien GP, Lin S, Hou CY, Hsu CN.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15214626},
pmid = {37960279}
}
@article{lin360027,
title = {Vaginal microbial dynamics and pathogen colonization in a humanized microbiota mouse model.},
author = {Mejia ME, Mercado-Evans V, Zulk JJ, Ottinger S, Ruiz K, Ballard MB, Fowler SW, Britton RA, Patras KA.},
journal = {NPJ Biofilms Microbiomes},
year = {2023},
doi = {10.1038/s41522-023-00454-9},
pmid = {37985659}
}
@article{lin360054,
title = {Mycobacterium tuberculosis Rv1987 protein attenuates inflammatory response and consequently alters microbiota in mouse lung.},
author = {Liu Y, Zhang J, Leng G, Hu J, Wang W, Deng G, Ma Y, Sha S.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1256866},
pmid = {38029253}
}
@article{lin359984,
title = {Free lipoproteins from Bifidobacterium longum alleviate osteoarthritis through modulation of the gut microbiome.},
author = {Sane F, Piva F, Romond MB.},
journal = {Microbiome Res Rep},
year = {2023},
doi = {10.20517/mrr.2023.12},
pmid = {38046818}
}
@article{lin359983,
title = {Gut-Joint Axis: Impact of Bifidobacterial Cell Wall Lipoproteins on Arthritis Development.},
author = {Piva F, Gervois P, Karrout Y, Sane F, Romond MB.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15234861},
pmid = {38068720}
}
@article{lin359992,
title = {Bifidobacterium animalis subsp. lactis Probio-M8 alleviates abnormal behavior and regulates gut microbiota in a mouse model suffering from autism.},
author = {Miao Z, Chen L, Zhang Y, Zhang J, Zhang H.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.01013-23},
pmid = {38108654}
}
@article{lin360051,
title = {The impact of gut microbiota changes on the intestinal mucus barrier in burned mice: a study using 16S rRNA and metagenomic sequencing.},
author = {Zha X, Su S, Wu D, Zhang P, Wei Y, Fan S, Huang Q, Peng X.},
journal = {Burns Trauma},
year = {2023},
doi = {10.1093/burnst/tkad056},
pmid = {38130728}
}
@article{lin359981,
title = {Protective Role of Taurine on Rat Offspring Hypertension in the Setting of Maternal Chronic Kidney Disease.},
author = {Tain YL, Hou CY, Chang-Chien GP, Lin S, Hsu CN.},
journal = {Antioxidants (Basel)},
year = {2023},
doi = {10.3390/antiox12122059},
pmid = {38136178}
}
@article{lin359942,
title = {Distribution and roles of Ligilactobacillus murinus in hosts.},
author = {Chuandong Z, Hu J, Li J, Wu Y, Wu C, Lai G, Shen H, Wu F, Tao C, Liu S, Zhang W, Shao H.},
journal = {Microbiol Res},
year = {2024},
doi = {10.1016/j.micres.2024.127648},
pmid = {38367479}
}
@article{lin360020,
title = {Changes in HLA-B27 Transgenic Rat Fecal Microbiota Following Tofacitinib Treatment and Ileocecal Resection Surgery: Implications for Crohn's Disease Management.},
author = {Blondeaux A, Valibouze C, Speca S, Rousseaux C, Dubuquoy C, Blanquart H, Zerbib P, Desreumaux P, Foligne B, Titecat M.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25042164},
pmid = {38396840}
}
@article{lin359990,
title = {Parental Social Isolation during Adolescence Alters Gut Microbiome in Rat Male Offspring.},
author = {Siddi C, Cosentino S, Tamburini E, Concas L, Pisano MB, Ardu R, Deplano M, Follesa P, Maciocco E, Porcu P, Serra M, Pisu MG.},
journal = {Biomolecules},
year = {2024},
doi = {10.3390/biom14020172},
pmid = {38397408}
}
@article{lin359962,
title = {Effects of Varied Sulfamethazine Dosage and Exposure Durations on Offspring Mice.},
author = {Wang H, Dang D, Zhu L, Pan M, Zhu J, Lu W, Lu S, Zhao J.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12020381},
pmid = {38399785}
}
@article{lin359947,
title = {Neuroprotective effects of probiotics on anxiety- and depression-like disorders in stressed mice by modulating tryptophan metabolism and the gut microbiota.},
author = {Jia L, Xiao L, Fu Y, Shao Z, Jing Z, Yuan J, Xie Y, Guo J, Wang Y, Geng W.},
journal = {Food Funct},
year = {2024},
doi = {10.1039/d3fo03897a},
pmid = {38404190}
}
@article{lin360048,
title = {Metagenomic analysis of the intestinal microbiome reveals the potential mechanism involved in Bacillus amyloliquefaciens in treating schistosomiasis japonica in mice.},
author = {Chen H, Huang S, Zhao Y, Sun R, Wang J, Yao S, Huang J, Yu Z.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.03735-23},
pmid = {38441977}
}
@article{lin360036,
title = {A long journey to the colon: The role of the small intestine microbiota in intestinal disease.},
author = {Shealy NG, Baltagulov M, Byndloss MX.},
journal = {Mol Microbiol},
year = {2024},
doi = {10.1111/mmi.15270},
pmid = {38690771}
}
@article{lin360026,
title = {Fangyukangsuan granules ameliorate hyperuricemia and modulate gut microbiota in rats.},
author = {Zhang QZ, Zhang JR, Li X, Yin JL, Jin LM, Xun ZR, Xue H, Yang WQ, Zhang H, Qu J, Xing ZK, Wang XM.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1362642},
pmid = {38745649}
}
@article{lin360046,
title = {Spatial recovery of the murine gut microbiota after antibiotics perturbation.},
author = {Taguer M, Xiao J, Crawford R, Shi H, Cheng MP, Citron M, Hannigan GD, Kasper SH.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.00707-24},
pmid = {38832780}
}
@article{lin360059,
title = {Novel probiotic preparation with in vivo gluten-degrading activity and potential modulatory effects on the gut microbiota.},
author = {Nikoloudaki O, Celano G, Polo A, Cappello C, Granehall L, Costantini A, Vacca M, Speckmann B, Di Cagno R, Francavilla R, De Angelis M, Gobbetti M.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.03524-23},
pmid = {38860826}
}
@article{lin360047,
title = {Characterization of Ligilactobacillus salivarius CRISPR-Cas systems.},
author = {Roberts A, Spang D, Sanozky-Dawes R, Nethery MA, Barrangou R.},
journal = {mSphere},
year = {2024},
doi = {10.1128/msphere.00171-24},
pmid = {38990000}
}
@article{lin359974,
title = {Resveratrol Propionate Ester Supplement Exerts Antihypertensive Effect in Juvenile Rats Exposed to an Adenine Diet via Gut Microbiota Modulation.},
author = {Tain YL, Chang CI, Hou CY, Chang-Chien GP, Lin SF, Hsu CN.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16132131},
pmid = {38999878}
}
@article{lin360028,
title = {Effect of Probiotic Bacteria on the Gut Microbiome of Mice with Lipopolysaccharide-Induced Inflammation.},
author = {Gryaznova M, Burakova I, Smirnova Y, Morozova P, Chirkin E, Gureev A, Mikhaylov E, Korneeva O, Syromyatnikov M.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12071341},
pmid = {39065109}
}
@article{lin360000,
title = {Comparison of gnotobiotic communities reveals milk-adapted metabolic functions and unexpected amino acid metabolism by the pre-weaning microbiome.},
author = {Lubin JB, Silverman MA, Planet PJ.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2387875},
pmid = {39133869}
}
@article{lin360031,
title = {Spaceflight alters host-gut microbiota interactions.},
author = {Gonzalez E, Lee MD, Tierney BT, Lipieta N, Flores P, Mishra M, Beckett L, Finkelstein A, Mo A, Walton P, Karouia F, Barker R, Jansen RJ, Green SJ, Weging S, Kelliher J, Singh NK, Bezdan D, Galazska J, Brereton NJB.},
journal = {NPJ Biofilms Microbiomes},
year = {2024},
doi = {10.1038/s41522-024-00545-1},
pmid = {39209868}
}
@article{lin359943,
title = {Schizophyllum commune fruiting body polysaccharides inhibit glioma by mediating ARHI regulation of PI3K/AKT signalling pathway.},
author = {Zheng SX, Chen JP, Liang RS, Zhuang BB, Wang CH, Zhang GL, Shi SS, Chen J.},
journal = {Int J Biol Macromol},
year = {2024},
doi = {10.1016/j.ijbiomac.2024.135326},
pmid = {39236963}
}
@article{lin359995,
title = {Impact of ginsenoside Rb1 on gut microbiome and associated changes in pharmacokinetics in rats.},
author = {Chen Y, Zhang KX, Liu H, Zhu Y, Bu QY, Song SX, Li YC, Zou H, You XY, Zhao GP.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-72225-1},
pmid = {39256599}
}
@article{lin360025,
title = {Heat-Killed Lactobacillus acidophilus Promotes Growth by Modulating the Gut Microbiota Composition and Fecal Metabolites of Piglets.},
author = {Miao H, Liang J, Lan G, Wu Q, Huang Z.},
journal = {Animals (Basel)},
year = {2024},
doi = {10.3390/ani14172528},
pmid = {39272313}
}
@article{lin360016,
title = {Synergy between Lactobacillus murinus and anti-PcrV antibody delivered in the airways to boost protection against Pseudomonas aeruginosa.},
author = {Secher T, Cortes M, Boisseau C, Barba Goudiaby MT, Pitiot A, Parent C, Thomas M, Heuze-Vourc'h N.},
journal = {Mol Ther Methods Clin Dev},
year = {2024},
doi = {10.1016/j.omtm.2024.101330},
pmid = {39314638}
}
@article{lin360069,
title = {FMT rescues mice from DSS-induced colitis in a STING-dependent manner.},
author = {Pu D, Yao Y, Zhou C, Liu R, Wang Z, Liu Y, Wang D, Wang B, Wang Y, Liu Z, Zhang Z, Feng B.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2397879},
pmid = {39324491}
}
@article{lin360034,
title = {Intestinal Lactobacillus murinus-derived small RNAs target porcine polyamine metabolism.},
author = {Fan L, Liu B, Wang Y, Tang B, Xu T, Fu J, Wang C, Liu Y, Ge L, Wei H, Ren W.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2413241121},
pmid = {39361652}
}
@article{lin360009,
title = {Associations between intestinal lactic acid bacteria species and feeding habits of zoo animals.},
author = {Horie M, Ohno T, Iwahashi H, Umemura M, Murotomi K.},
journal = {Microbiome Res Rep},
year = {2024},
doi = {10.20517/mrr.2024.08},
pmid = {39421257}
}
@article{lin360005,
title = {Lactobacillaceae differentially impact butyrate-producing gut microbiota to drive CNS autoimmunity.},
author = {Montgomery TL, Toppen LC, Eckstrom K, Heney ER, Kennedy JJ, Scarborough MJ, Krementsov DN.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2418415},
pmid = {39462277}
}
@article{lin359964,
title = {Mice colonized with the defined microbial community OMM19.1 are susceptible to Clostridioides difficile infection without prior antibiotic treatment.},
author = {Chua M, Collins J.},
journal = {mSphere},
year = {2024},
doi = {10.1128/msphere.00718-24},
pmid = {39470217}
}
@article{lin359985,
title = {Gastric microbiome composition accompanied with the Helicobacter pylori related DNA methylation anomaly.},
author = {Shijimaya T, Tahara T, Shimogama T, Yamazaki J, Kobayashi S, Nakamura N, Takahashi Y, Tomiyama T, Fukui T, Naganuma M.},
journal = {Epigenomics},
year = {2024},
doi = {10.1080/17501911.2024.2418803},
pmid = {39492780}
}
@article{lin360030,
title = {Multi-omics reveals the alleviating effect of berberine on ulcerative colitis through modulating the gut microbiome and bile acid metabolism in the gut-liver axis.},
author = {Yu J, Zheng Y, Liu C, Xie Z, Liu Q, Yang S, Tian Q, Song C, Chen S.},
journal = {Front Pharmacol},
year = {2024},
doi = {10.3389/fphar.2024.1494210},
pmid = {39512826}
}
@article{lin359973,
title = {Crosstalk between gut microbiota and tumor: tumors could cause gut dysbiosis and metabolic imbalance.},
author = {Zhang S, Wen H, Chen Y, Ning J, Hu D, Dong Y, Yao C, Yuan B, Yang S.},
journal = {Mol Oncol},
year = {2025},
doi = {10.1002/1878-0261.13763},
pmid = {39592438}
}
@article{lin359948,
title = {Semen Trigonellae alleviates LPS-induced depressive behavior via enhancing the abundance of Ligilactobacillus spp.},
author = {Chang W, Guo J, Yang Y, Zou L, Fu Y, Li M, Li L, Li C, Wang X, Zhao X, Wu C.},
journal = {Food Sci Nutr},
year = {2024},
doi = {10.1002/fsn3.4475},
pmid = {39619956}
}
@article{lin360066,
title = {Defective Atg16l1 in intestinal epithelial cells links to altered fecal microbiota and metabolic shifts during pregnancy in mice.},
author = {Lopez-Agudelo VA, Falk-Paulsen M, Bharti R, Rehman A, Sommer F, Wacker EM, Ellinghaus D, Luzius A, Sievers LK, Liebeke M, Kaser A, Rosenstiel P.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2429267},
pmid = {39620359}
}
@article{lin360001,
title = {Mucosal Hub Bacteria as Potential Targets for Improving High-Fat Diet-Related Intestinal Barrier Injury.},
author = {Shao L, Zhang B, Song Y, Lyu Z, Zhang W, Yang W, Fu J, Li J, Shi J.},
journal = {Can J Infect Dis Med Microbiol},
year = {2024},
doi = {10.1155/cjid/3652740},
pmid = {39634324}
}
@article{lin360029,
title = {Probiotic Mixture Attenuates Colorectal Tumorigenesis in Murine AOM/DSS Model by Suppressing STAT3, Inducing Apoptotic p53 and Modulating Gut Microbiota.},
author = {Leung HKM, Lo EKK, Chen C, Zhang F, Felicianna, Ismaiah MJ, El-Nezami H.},
journal = {Probiotics Antimicrob Proteins},
year = {2025},
doi = {10.1007/s12602-024-10405-1},
pmid = {39641861}
}
@article{lin360045,
title = {Integrated Microbiome and Metabolomic to Explore the Mechanism of Coptisine in Alleviating Ulcerative Colitis.},
author = {Wu W, Sun Y, Niu S, Li X, Chen L, Xie S, Chang L, Wei S, Jing M, Li H, Zhao Y.},
journal = {Phytother Res},
year = {2025},
doi = {10.1002/ptr.8389},
pmid = {39648789}
}
@article{lin359940,
title = {The unique role of fluoxetine in alleviating depression and anxiety by regulating gut microbiota and the expression of vagus nerve-mediated serotonin and melanocortin-4 receptors.},
author = {Lee YB, Cho YJ, Kim JK.},
journal = {Biomed Pharmacother},
year = {2025},
doi = {10.1016/j.biopha.2024.117748},
pmid = {39671722}
}
@article{lin359959,
title = {Resveratrol Butyrate Esters Reduce Hypertension in a Juvenile Rat Model of Chronic Kidney Disease Exacerbated by Microplastics.},
author = {Huang YN, Hsu CN, Hou CY, Chen SY, Tain YL.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16234076},
pmid = {39683469}
}
@article{lin360010,
title = {Effect of composite yeast culture on the jejunal barrier function, inflammatory response, and microbial community structure of laying hens during the late stage of egg production.},
author = {Luo Q, Yang L, Tumenjargal B, Liu S, Ma J, Ning J, Yun Z, Zhang X, Wu Y, Lu Y, Wu X, Wang L, Demberel S, Liu D.},
journal = {Front Vet Sci},
year = {2024},
doi = {10.3389/fvets.2024.1524726},
pmid = {39744721}
}
@article{lin360043,
title = {Ramulus Mori (Sangzhi) alkaloids ameliorate high-fat diet induced obesity in rats by modulating gut microbiota and bile acid metabolism.},
author = {Shang X, Fu Y, Wang Y, Yan S.},
journal = {Front Endocrinol (Lausanne)},
year = {2024},
doi = {10.3389/fendo.2024.1506430},
pmid = {39758340}
}
@article{lin360015,
title = {Polyphenols and Microbiota Modulation: Insights from Swine and Other Animal Models for Human Therapeutic Strategies.},
author = {Anghel AC, Taranu I, Ortan A, Marcu Spinu S, Dragoi Cudalbeanu M, Rosu PM, Babeanu NE.},
journal = {Molecules},
year = {2024},
doi = {10.3390/molecules29246026},
pmid = {39770115}
}
@article{lin359997,
title = {Wild-Mouse-Derived Gut Microbiome Transplantation in Laboratory Mice Partly Alleviates House-Dust-Mite-Induced Allergic Airway Inflammation.},
author = {Islam MZ, Jozipovic D, Lopez PA, Krych L, Correia BSB, Bertram HC, Hansen AK, Hansen CHF.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12122499},
pmid = {39770703}
}
@article{lin360004,
title = {Impact of Edible Insect Polysaccharides on Mouse Gut Microbiota: A Study on White-Spotted Flower Chafer Larva (Protaetia brevitarsis seulensis) and Silkworm Pupa (Bombyx mori).},
author = {Lee JH, Son H, Subramaniyam S, Lim HJ, Park S, Choi RY, Kim IW, Seo M, Kweon HY, Kim Y, Kim SW, Choi JS, Shin Y.},
journal = {Foods},
year = {2024},
doi = {10.3390/foods14010006},
pmid = {39796296}
}
@article{lin360013,
title = {TSST-1 promotes colonization of Staphylococcus aureus within the vaginal tract by activation of CD8+ T cells.},
author = {Dufresne K, Al KF, Craig HC, Coleman CEM, Kasper KJ, Burton JP, McCormick JK.},
journal = {Infect Immun},
year = {2025},
doi = {10.1128/iai.00439-24},
pmid = {39840991}
}
@article{lin359965,
title = {Atg5 deficiency in basophils improves metabolism in lupus mice by regulating gut microbiota dysbiosis.},
author = {Chen J, Pan Q, Lu L, Huang X, Wang S, Liu X, Lun J, Xu X, Su H, Guo F, Yang L, You L, Xiao H, Luo W, Liu HF, Pan Q.},
journal = {Cell Commun Signal},
year = {2025},
doi = {10.1186/s12964-025-02041-1},
pmid = {39844180}
}
@article{lin359975,
title = {Seasonal Variations in the Structure and Function of the Gut Flora in Adult Male Rhesus Macaques Reared in Outdoor Colonies.},
author = {Lv L, Zhang F, Zhou H, Xiao W, Hu Y, Wang W, Zhu Z, Zhu F, Qin D, Hu X.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13010117},
pmid = {39858885}
}
@article{lin359950,
title = {Bacterial community assembly of specific pathogen-free neonatal mice.},
author = {Kennedy EA, Weagley JS, Kim AH, Antia A, DeVeaux AL, Baldridge MT.},
journal = {Microbiome},
year = {2025},
doi = {10.1186/s40168-025-02043-8},
pmid = {39920864}
}
@article{lin171129,
title = {Murine gut microbial interactions exert antihyperglycemic effects.},
author = {Guo L, Xu L, Nie Y, Liu L, Liu Z, Yang Y.},
journal = {ISME J},
year = {2025},
doi = {10.1093/ismejo/wraf028},
pmid = {39961020}
}
@article{lin360018,
title = {Bifidobacterium longum increases serum vitamin D metabolite levels and modulates intestinal flora to alleviate osteoporosis in mice.},
author = {Wang H, Tian G, Pei Z, Yu X, Wang Y, Xu F, Zhao J, Lu S, Lu W.},
journal = {mSphere},
year = {2025},
doi = {10.1128/msphere.01039-24},
pmid = {39982061}
}
@article{lin359957,
title = {Effects of Monascus pilosus SWM 008-Fermented Red Mold Rice and Its Functional Components on Gut Microbiota and Metabolic Health in Rats.},
author = {Yang PX, You CR, Lin YH, Wang CS, Hsu YW, Pan TM, Lee CL.},
journal = {Foods},
year = {2025},
doi = {10.3390/foods14040651},
pmid = {40002095}
}
@article{lin360044,
title = {2'-FL and cross-feeding bifidobacteria reshaped the gut microbiota of infants with atopic dermatitis ex vivo and prevented dermatitis in mice post-microbiota transplantation through retinol metabolism activation.},
author = {Qi C, Li Z, Tu H, Sun F, Guo W, Di C, He R, Ze X, Zhang L, Gao R, Hu P, Yang W, Li K, Liu J, Pan X, Jin Z, Sun J.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2474148},
pmid = {40025650}
}
@article{lin360035,
title = {Rhodococcus spp. interacts with human norovirus in clinical samples and impairs its replication on human intestinal enteroids.},
author = {Santiso-Bellon C, Randazzo W, Carmona-Vicente N, Pena-Gil N, Carcamo-Calvo R, Lopez-Navarro S, Navarro-Lleo N, Yebra MJ, Monedero V, Buesa J, Gozalbo-Rovira R, Rodriguez-Diaz J.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2469716},
pmid = {40032727}
}
@article{lin360014,
title = {Different intestinal ecological niches drive the divergent evolution of probiotics in the gut.},
author = {Han Z, Huang D, Liu X, Ma W, Cui W, Jiang S, Zhen D, Zhang J.},
journal = {ISME Commun},
year = {2025},
doi = {10.1093/ismeco/ycaf023},
pmid = {40041705}
}
@article{lin360007,
title = {Exploring the CDCA-Scd1 Axis: Molecular Mechanisms Linking the Colitis Microbiome to Neurological Deficits.},
author = {Du D, Li Q, Wei Z, Wang Z, Xu L.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms26052111},
pmid = {40076732}
}
@article{lin359991,
title = {Lactiplantibacillus plantarum GOLDGUT-HNU082 Alleviates CUMS-Induced Depressive-like Behaviors in Mice by Modulating the Gut Microbiota and Neurotransmitter Levels.},
author = {Li W, Xu M, Liu Y, Zhang S, Wang J, Zhang Z, Xiao G, Wang R, Zhang J, Xue H.},
journal = {Foods},
year = {2025},
doi = {10.3390/foods14050813},
pmid = {40077516}
}
@article{lin359946,
title = {Lactococcus garvieae aggravates cholestatic liver disease by increasing intestinal permeability and enhancing bile acid reabsorption.},
author = {Liu M, Ji YL, Hu YJ, Su YX, Yang J, Wang XY, Chu HY, Zhang X, Dong SJ, Yang H, Liu YH, Zhou SM, Guo LP, Ran Y, Li YN, Zhao JW, Zhang ZG, Piao MY, Zhou L.},
journal = {World J Gastroenterol},
year = {2025},
doi = {10.3748/wjg.v31.i10.101014},
pmid = {40093673}
}
@article{lin359987,
title = {Dextrose Prolotherapy's Impact on the Urinary Microbiome in Interstitial Cystitis/Bladder Pain Syndrome.},
author = {Chen LK, Chang SJ, Chen CL, Yan JH, Cherng JH, Fan GY, Meng E, Hsu YC.},
journal = {Int J Med Sci},
year = {2025},
doi = {10.7150/ijms.104028},
pmid = {40093799}
}
@article{lin360024,
title = {Altered Gut Microbiota Contributes to Acute-Respiratory-Distress-Syndrome-Related Depression through Microglial Neuroinflammation.},
author = {Zhu B, Gu Z, Hu H, Huang J, Zeng Z, Liang H, Yuan Z, Huang S, Qiu Y, Sun XD, Liu Y.},
journal = {Research (Wash D C)},
year = {2025},
doi = {10.34133/research.0636},
pmid = {40110391}
}
@article{lin359939,
title = {The murine lung microbiome is disbalanced by the human-pathogenic fungus Aspergillus fumigatus resulting in enrichment of anaerobic bacteria.},
author = {Nikitashina L, Chen X, Radosa L, Li K, Strassburger M, Seelbinder B, Bohnke W, Vielreicher S, Nietzsche S, Heinekamp T, Jacobsen ID, Panagiotou G, Brakhage AA.},
journal = {Cell Rep},
year = {2025},
doi = {10.1016/j.celrep.2025.115442},
pmid = {40111997}
}
@article{lin360040,
title = {Integrative metagenomics and metabolomics reveal age-associated gut microbiota and metabolite alterations in a hamster model of COVID-19.},
author = {Brito Rodrigues P, de Rezende Rodovalho V, Sencio V, Benech N, Creskey M, Silva Angulo F, Delval L, Robil C, Gosset P, Machelart A, Haas J, Descat A, Goosens JF, Beury D, Maurier F, Hot D, Wolowczuk I, Sokol H, Zhang X, Ramirez Vinolo MA, Trottein F.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2486511},
pmid = {40172215}
}
@article{lin359978,
title = {Reutericyclin, a specialized metabolite of Limosilactobacillus reuteri, mitigates risperidone-induced weight gain in mice.},
author = {Aboulalazm FA, Kazen AB, deLeon O, Muller S, Saravia FL, Lozada-Fernandez V, Hadiono MA, Keyes RF, Smith BC, Kellogg SL, Grobe JL, Kindel TL, Kirby JR.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2477819},
pmid = {40190120}
}
@article{lin359961,
title = {Agaricus bisporus stipe fed to dairy heifers: effects on growth performance, immunity and antioxidant capacity, and rumen microbiota.},
author = {Jia P, Lu C, Yang X, Jiang X, Lei H, Lu N, Xia D.},
journal = {Front Vet Sci},
year = {2025},
doi = {10.3389/fvets.2025.1556330},
pmid = {40191082}
}
@article{lin359982,
title = {Gut Microbiota Colonization in Early Life Influences Susceptibility to Adulthood Hepatic Lipid Accumulation in High-Fat-Diet-Fed Mice.},
author = {Zhu YY, Dong X, Zhou H, Li ZY, Wang B, Song YP, Liu ZB, Lu X, Zhang YH, Huang Y, Wang H, Xu DX.},
journal = {Adv Sci (Weinh)},
year = {2025},
doi = {10.1002/advs.202412827},
pmid = {40192057}
}
@article{lin359999,
title = {Comparative analyses of the gut microbiome of two sympatric rodent species, Myodes rufocanus and Apodemus peninsulae, in northeast China based on metagenome sequencing.},
author = {Cao J, Wang S, Ding R, Liu Y, Yuan B.},
journal = {PeerJ},
year = {2025},
doi = {10.7717/peerj.19260},
pmid = {40226542}
}
@article{lin360070,
title = {Enteric glia regulate Paneth cell secretion and intestinal microbial ecology.},
author = {Prochera A, Muppirala AN, Kuziel GA, Soualhi S, Shepherd A, Sun L, Issac B, Rosenberg HJ, Karim F, Perez K, Smith KH, Archibald TH, Rakoff-Nahoum S, Hagen SJ, Rao M.},
journal = {Elife},
year = {2025},
doi = {10.7554/elife.97144},
pmid = {40227232}
}
@article{lin359953,
title = {Antimicrobial Effects of Kelisha Capsule on Escherichia coli Induced Diarrhea in Mice.},
author = {Shi G, Lu X, Wang G, Qian K, Peng X, Zhu Y, Wu J, Ke H, Chen L, Zheng Y, Yang T, Shi X, Huang P.},
journal = {Drug Des Devel Ther},
year = {2025},
doi = {10.2147/dddt.s511158},
pmid = {40231195}
}
@article{lin359937,
title = {Arecoline Alleviates Depression via Gut-Brain Axis Modulation, Neurotransmitter Balance, Neuroplasticity Enhancement, and Inflammation Reduction in CUMS Mice.},
author = {Xu M, Li W, Hu X, Zhang J.},
journal = {J Agric Food Chem},
year = {2025},
doi = {10.1021/acs.jafc.4c11643},
pmid = {40257350}
}
@article{lin359958,
title = {Distinct Effects of Lactiplantibacillus plantarum HNU082 on Microbial Single-Nucleotide Variants in Large Intestine and Small Intestine.},
author = {Ma W, Han Z, Liu X, Cui W, Zhen D, Zhou X, Song Y, Jiang S.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13040731},
pmid = {40284568}
}
@article{lin360052,
title = {Efficacy of a postbiotic and its components in promoting colonic transit and alleviating chronic constipation in humans and mice.},
author = {Ma T, Li Y, Yang N, Wang H, Shi X, Liu Y, Jin H, Kwok LY, Sun Z, Zhang H.},
journal = {Cell Rep Med},
year = {2025},
doi = {10.1016/j.xcrm.2025.102093},
pmid = {40286792}
}
@article{lin359986,
title = {Co-variation of Host Gene Expression and Gut Microbiome in Intestine-Specific Spp1 Conditional Knockout Mice.},
author = {Li N, Gao G, Zhang T, Zhao C, Zhao Y, Zhang Y, Sun Z.},
journal = {Curr Microbiol},
year = {2025},
doi = {10.1007/s00284-025-04246-6},
pmid = {40327160}
}
@article{lin360023,
title = {Galactooligosaccharides Attenuate Behavioural, Haematological and Immunological Abnormalities and Influence Gut Microbiota in Rats with Amygdala Hyperactivation Induced by Electrical Stimulation.},
author = {Rucinski J, Kurowska-Rucinska E, Myslinska D, Grembecka B, Piekarczyk N, Necel A, Kosznik-Kwasnicka K, Majkutewicz I.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms26094353},
pmid = {40362590}
}
@article{lin359994,
title = {Chinese Sausage Simulates High Calorie-Induced Obesity In Vivo, Identifying the Potential Benefits of Weight Loss and Metabolic Syndrome of Resveratrol Butyrate Monomer Derivatives.},
author = {Huang PH, Chen YW, Shie CK, Chen SY, Lee BH, Yin LJ, Hou CY, Shih MK.},
journal = {J Nutr Metab},
year = {2025},
doi = {10.1155/jnme/8414627},
pmid = {40415762}
}
@article{lin359996,
title = {ACE2 shedding exacerbates sepsis-induced gut leak via loss of microbial metabolite 5-methoxytryptophan.},
author = {Gong J, Lu H, Li Y, Xu Q, Ma Y, Lou A, Cui W, Song W, Qu P, Chen Z, Quan L, Liu X, Meng Y, Li X.},
journal = {Microbiome},
year = {2025},
doi = {10.1186/s40168-025-02128-4},
pmid = {40442816}
}
@article{lin359938,
title = {Perfluorooctane sulfonic acid impairs spermatogenesis via the liver-gut microbiota-testis axis: a central role of chenodeoxycholic acid metabolism.},
author = {Yang W, Zou P, He S, Cui H, Yang Z, An H, Chen Q, Huang W, Guo H, Liu J, Ling X, Cao J, Ao L.},
journal = {J Adv Res},
year = {2025},
doi = {10.1016/j.jare.2025.06.037},
pmid = {40554061}
}
@article{lin360003,
title = {Effects of Periodic Short-Term Heat Stress on Biological Characteristics and Gut Bacteria of Spodoptera frugiperda.},
author = {Jia J, Liang M, Zhao Z, Huang W, Feng Q, Lin Z, Ji X.},
journal = {Insects},
year = {2025},
doi = {10.3390/insects16060584},
pmid = {40559014}
}
@article{lin359941,
title = {Dellaglioa kimchii sp. nov., a novel lactic acid bacterium isolated from kimchi.},
author = {Ko HI, Kim SR, Jeong CR, Yun M, Nam S, Eun JB, Kim TW.},
journal = {Int J Syst Evol Microbiol},
year = {2025},
doi = {10.1099/ijsem.0.006829},
pmid = {40587182}
}
@article{lin359988,
title = {Gut microbial Nordihydroguaiaretic acid suppresses macrophage pyroptosis to regulate epithelial homeostasis and inflammation.},
author = {Wang J, Tan H, Ye Z, Weng S, Shi Y, Xu J, Liu H, Li J, Huang L, Zhai L, Luo H, Lin Z, Zhong C, Tang J, Wang Z, Zhang H, Zhang B, Huang C.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2518338},
pmid = {40596758}
}
@article{lin359935,
title = {Effect of acupuncture at Back-Shu points on gut microbiota in insomnia model rats based on metagenomic sequencing technology.},
author = {Qi S, Qian J, Li Y, Li Y, Li W, Gao X.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1541958},
pmid = {40611959}
}
@article{lin359967,
title = {Metabolomics combined with metagenomics analysis reveals the potential mechanism of Zhejiang psyllium polysaccharides against hyperuricemia in rats.},
author = {Wu D, Niu J, Hu J, Wang H, Kuang H.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-09048-1},
pmid = {40624236}
}
@article{lin359968,
title = {A droplet microfluidic strategy for cultivation, investigation, and high-throughput isolation of mouse gut microbiome bacteria.},
author = {Hengoju S, Abdissa K, Boto ST, Samimi A, Martin K, Jacobsen ID, Rosenbaum MA.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.00695-25},
pmid = {40637405}
}
@article{lin359951,
title = {PD-L1 deficiency exacerbates colitis severity by remodeling gut microbiota in inflammatory bowel disease.},
author = {Ma Y, Suo J, Sheng S, Chen L.},
journal = {Front Immunol},
year = {2025},
doi = {10.3389/fimmu.2025.1622744},
pmid = {40661950}
}
@article{lin360006,
title = {A global perspective on autoinducer-2-mediated cell communication in prokaryotes.},
author = {Liu X, Wei Z, Yang M, Zhang X, Wang Z, Li S, Li C, Zhu L, Zhang L, Zhang X, Shen X.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.112908},
pmid = {40678516}
}
@article{lin171130,
title = {Ultra-sensitive metaproteomics redefines the dark metaproteome, uncovering host-microbiome interactions and drug targets in intestinal diseases.},
author = {Xian F, Brenek M, Krisp C, Urbauer E, Ravi Kumar RK, Aguanno D, Srikumar T, Liu Q, Barry AM, Ma B, Krieger J, Haller D, Schmidt M, Gomez-Varela D.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-61977-7},
pmid = {40681571}
}
@article{lin360017,
title = {Early life microbiome disbalance impacts neuroendocrine outcomes in pre-pubertal mice in a sexually dimorphic manner.},
author = {Nankova BB, Hu F, LaGamma EF.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1504513},
pmid = {40693139}
}
@article{lin359956,
title = {Ligilactobacillus Murinus and Lactobacillus Johnsonii Suppress Macrophage Pyroptosis in Atherosclerosis through Butyrate-GPR109A-GSDMD Axis.},
author = {Hua R, Ding N, Hua Y, Wang X, Xu Y, Qiao X, Shi X, Bai T, Xiong Y, Zhuo X, Fan C, Zhou J, Wu Y, Liu J, Yuan Z, Li T.},
journal = {Adv Sci (Weinh)},
year = {2025},
doi = {10.1002/advs.202501707},
pmid = {40726432}
}
@article{lin359989,
title = {Bifidobacterium longum subsp. infantis CCFM1426 enhances the anti-colitic effect of vitamin A via retinoic acid restoration and gut microbiota modulation in ulcerative colitis mice.},
author = {Yu X, Huang L, Wang Y, Li L, Lu W, Zhang Z, Wang H.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1644649},
pmid = {40777179}
}
@article{lin359955,
title = {Cutaneous UVB Irradiation Alters Gut Microbiota Independently of Skin Inflammation in SKH-1 Hairless Mice.},
author = {Lee E, Sim WJ, Lim TG.},
journal = {J Microbiol Biotechnol},
year = {2025},
doi = {10.4014/jmb.2507.07020},
pmid = {41016823}
}
@article{lin360057,
title = {Secretory IgA amplification during immune checkpoint blockade enhances the control of tumor growth by enterotropic T cells.},
author = {De Ponte Conti B, Marino R, Rezzonico-Jost T, Forcato M, Mangani D, Notario E, Gargari G, Carelli E, Rinaldi A, Raimondi A, Moro S, Marzano M, Visci G, Perruzza L, Raneri M, Dallavalle D, Mantegazza G, Montani L, Prisco F, Takur R, Geginat J, Seehusen F, Notarbartolo S, Pesole G, Bicciato S, Guglielmetti S, Grassi F.},
journal = {Sci Adv},
year = {2025},
doi = {10.1126/sciadv.aeb5308},
pmid = {41042869}
}
@article{lin359993,
title = {Prenatal depression-associated gut microbiota induces depressive-like behaviors and hippocampal neuroinflammation in germ-free mice.},
author = {Cao Y, Fan X, Zang T, Qiu T, Fang Q, Bai J, Liu Y.},
journal = {Transl Psychiatry},
year = {2025},
doi = {10.1038/s41398-025-03606-x},
pmid = {41052982}
}
@article{lin359963,
title = {Ginseng Polysaccharides Inhibit Aspergillus sydowii-Driven Lung Adenocarcinoma via Modulating Gut Microbiota-Bile Acid Metabolism Axis.},
author = {He J, Shu X, Pan H, Wang M, Song Y, Zhou F, Lian L, Chen L, Ma G, Zhao Y, Li R, Liu L.},
journal = {Cancers (Basel)},
year = {2025},
doi = {10.3390/cancers17193134},
pmid = {41097662}
}
@article{lin359944,
title = {Characterizing the microbiome of "sterile" organs in experimental mice and evidence of translocation of bacteria from the gut to other internal organs.},
author = {Xu M, Guan S, Zhong C, Ma M, Tao L, Huang G.},
journal = {Imeta},
year = {2025},
doi = {10.1002/imt2.70081},
pmid = {41112047}
}
@article{lin359945,
title = {On-tissue derivatization for mass spectrometry imaging reveals the distribution of short chain fatty acids in murine digestive tract.},
author = {Nakagawa K, Okamoto M, Nishida M, Terashima K, Kobayashi M, Teramoto K, Kubo A.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1584487},
pmid = {41112572}
}
@article{lin359933,
title = {Perillyl alcohol ameliorates high-fat diet-induced obesity in mice by modulating gut microbiota and activating IRF4-mediated brown fat thermogenesis.},
author = {Chen S, Chen S, Li W, Wang M, Pan R, Duan Y, Liao C, Zhang S.},
journal = {Phytomedicine},
year = {2025},
doi = {10.1016/j.phymed.2025.157400},
pmid = {41138577}
}
@article{lin359949,
title = {Maternal Fecal Microbiota Transplantation Mitigates Hypertension in Offspring Exposed to a High-Fructose Diet.},
author = {Hsu CN, Hou CY, Tzeng HT, Wu KLH, Lee WC, Chang-Chien GP, Lin SF, Tain YL.},
journal = {Antioxidants (Basel)},
year = {2025},
doi = {10.3390/antiox14101168},
pmid = {41154477}
}
@article{lin359980,
title = {Lacticaseibacillus paracasei JY062 Postbiotic Alleviated 3% DSS-Induced Colitis in Mice via Integrated Antioxidant, Barrier Repair, Immunomodulatory and Microbiota Modulation.},
author = {Guo J, Sun Y, Gao K, Zhao H, Su Y, Zhao Y, Zhang Y, Jiang Y.},
journal = {Antioxidants (Basel)},
year = {2025},
doi = {10.3390/antiox14101256},
pmid = {41154565}
}
@article{lin359934,
title = {Rosa roxburghii Tratt juice ameliorates fluoride exposure-induced bone metabolism disorders by modulating gut microbiota and serum metabolites.},
author = {Zhang Z, Zhong S, Zhang R, Zeng Q, Lei P, Qiu W, Chen W, Wang D, Wei X, Huang Q, Hu T, Luo P.},
journal = {Food Res Int},
year = {2025},
doi = {10.1016/j.foodres.2025.117359},
pmid = {41214999}
}
@article{lin359952,
title = {Intestinal Dysbiosis Caused by Epithelial Fabp6 Gene Disruption Exacerbates Gut Inflammatory Disease.},
author = {Kwon K, Kim M, Jung Y, Yoon MY, Lee JY, Yoon SS, Rho M, Chung YW, Ryu JH.},
journal = {Immune Netw},
year = {2025},
doi = {10.4110/in.2025.25.e35},
pmid = {41220843}
}
@article{lin359966,
title = {Whole-Genome Sequence Analysis and Subtractive Screening of Lactobacilli in the Searching for New Probiotics to Protect the Mammary Glands.},
author = {Bujnakova D, Galambosiova T, Karahutova L.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms262110809},
pmid = {41226844}
}
@article{lin360021,
title = {Metabolomics and metagenomics in mice reveal the role of the gut microbiota in tryptophan metabolism.},
author = {Leve M, Manghi P, Bredon M, Lefevre A, Manara S, Armanini F, Emond P, Planchais J, Rolhion N, Segata N, Sokol H.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.113751},
pmid = {41234773}
}
@article{lin359972,
title = {Investigation of ED4 supplementation on cardiovascular parameters in rats with elevated systemic TMAO.},
author = {Qiu YT, Huang PH, Chen YW, Shih MK, Lee BH, Sun PP, Hou CY, Chen SY.},
journal = {NPJ Sci Food},
year = {2025},
doi = {10.1038/s41538-025-00552-2},
pmid = {41271771}
}
@article{lin359932,
title = {Comparison of physicochemical properties of water- and alkaline-extracted polysaccharides from Schizophyllum commune and their anti-obesogenic effects in vivo.},
author = {Li C, Yin C, Li J, Wen J, Fan L, Ma H, Fan X, Shi D, Yu W, Qiu J, Gao H.},
journal = {Food Chem},
year = {2025},
doi = {10.1016/j.foodchem.2025.147220},
pmid = {41274143}
}