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title = {Identification and cloning of gusA, encoding a new beta-glucuronidase from Lactobacillus gasseri ADH.},
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journal = {Appl Environ Microbiol},
year = {2001},
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title = {AT oligonucleotides inducing B lymphocyte activation exist in probiotic Lactobacillus gasseri.},
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title = {A novel immunostimulating aspect of Lactobacillus gasseri: induction of "Gasserokine" as chemoattractants for macrophages.},
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journal = {Int J Food Microbiol},
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@article{lin170755,
title = {In vitro adhesion specificity of indigenous Lactobacilli within the avian intestinal tract.},
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journal = {Appl Environ Microbiol},
year = {2002},
doi = {10.1128/aem.68.10.5155-5159.2002},
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@article{lin16463,
title = {Pulsed-field gel electrophoretic analysis of the genome of Lactobacillus gasseri ATCC33323, and construction of a physical map.},
author = {Abs El-Osta YG, Hillier AJ, Davidson BE, Dobos M},
journal = {Electrophoresis},
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@article{lin170796,
title = {Contribution of aggregation-promoting factor to maintenance of cell shape in Lactobacillus gasseri 4B2.},
author = {Jankovic I, Ventura M, Meylan V, Rouvet M, Elli M, Zink R.},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/jb.185.11.3288-3296.2003},
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@article{lin170801,
title = {Detection and identification of Lactobacillus species in crops of broilers of different ages by using PCR-denaturing gradient gel electrophoresis and amplified ribosomal DNA restriction analysis.},
author = {Guan LL, Hagen KE, Tannock GW, Korver DR, Fasenko GM, Allison GE.},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/aem.69.11.6750-6757.2003},
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@article{lin170797,
title = {The genome sequence of the probiotic intestinal bacterium Lactobacillus johnsonii NCC 533.},
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journal = {Proc Natl Acad Sci U S A},
year = {2004},
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@article{lin170879,
title = {Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.},
author = {Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink R.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.5.3110-3121.2004},
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@article{lin170719,
title = {Transformation of folate-consuming Lactobacillus gasseri into a folate producer.},
author = {Wegkamp A, Starrenburg M, de Vos WM, Hugenholtz J, Sybesma W.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.5.3146-3148.2004},
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@article{lin170774,
title = {Quantitative analysis of diverse Lactobacillus species present in advanced dental caries.},
author = {Byun R, Nadkarni MA, Chhour KL, Martin FE, Jacques NA, Hunter N.},
journal = {J Clin Microbiol},
year = {2004},
doi = {10.1128/jcm.42.7.3128-3136.2004},
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@article{lin170845,
title = {Indigenous pulmonary Propionibacterium acnes primes the host in the development of sarcoid-like pulmonary granulomatosis in mice.},
author = {Nishiwaki T, Yoneyama H, Eishi Y, Matsuo N, Tatsumi K, Kimura H, Kuriyama T, Matsushima K.},
journal = {Am J Pathol},
year = {2004},
doi = {10.1016/s0002-9440(10)63327-5},
pmid = {15277236}
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@article{lin170798,
title = {Expression of a heterologous manganese superoxide dismutase gene in intestinal lactobacilli provides protection against hydrogen peroxide toxicity.},
author = {Bruno-Barcena JM, Andrus JM, Libby SL, Klaenhammer TR, Hassan HM.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.8.4702-4710.2004},
pmid = {15294805}
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@article{lin16462,
title = {Characterization of lytic enzyme activities of Lactobacillus gasseri with special reference to autolysis.},
author = {Yokoi KJ, Kawasaki K, Taketo A, Kodaira K},
journal = {Int J Food Microbiol},
year = {2004},
doi = {10.1016/j.ijfoodmicro.2004.03.021},
pmid = {15454317}
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@article{lin170818,
title = {Riboflavin production in Lactococcus lactis: potential for in situ production of vitamin-enriched foods.},
author = {Burgess C, O'connell-Motherway M, Sybesma W, Hugenholtz J, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.10.5769-5777.2004},
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@article{lin170836,
title = {Characterization of the groEL and groES loci in Bifidobacterium breve UCC 2003: genetic, transcriptional, and phylogenetic analyses.},
author = {Ventura M, Canchaya C, Zink R, Fitzgerald GF, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.10.6197-6209.2004},
pmid = {15466567}
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@article{lin170770,
title = {Molecular characterization of two lactate dehydrogenase genes with a novel structural organization on the genome of Lactobacillus sp. strain MONT4.},
author = {Weekes J, Yuksel GU.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.10.6290-6295.2004},
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@article{lin16461,
title = {Lactobacillus gasseri: effects on mouse intestinal flora enzyme activity and isoflavonoids in the caecum and plasma.},
author = {Tamura M, Ohnishi-Kameyama M, Shinohara K},
journal = {Br J Nutr},
year = {2004},
doi = {10.1079/bjn20041267},
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title = {Gene structure and transcriptional organization of the dnaK operon of Bifidobacterium breve UCC 2003 and application of the operon in bifidobacterial tracing.},
author = {Ventura M, Zink R, Fitzgerald GF, van Sinderen D.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.1.487-500.2005},
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@article{lin170881,
title = {A high-molecular-mass surface protein (Lsp) and methionine sulfoxide reductase B (MsrB) contribute to the ecological performance of Lactobacillus reuteri in the murine gut.},
author = {Walter J, Chagnaud P, Tannock GW, Loach DM, Dal Bello F, Jenkinson HF, Hammes WP, Hertel C.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.2.979-986.2005},
pmid = {15691956}
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title = {Molecular properties of the two-component cell lysis system encoded by prophage phigaY of Lactobacillus gasseri JCM 1131T: cloning, sequencing, and expression in Escherichia coli.},
author = {Yokoi KJ, Shinohara M, Kawahigashi N, Nakagawa K, Kawasaki K, Nakamura S, Taketo A, Kodaira K},
journal = {Int J Food Microbiol},
year = {2005},
doi = {10.1016/j.ijfoodmicro.2004.08.021},
pmid = {15808364}
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@article{lin170816,
title = {Microbes on the human vaginal epithelium.},
author = {Hyman RW, Fukushima M, Diamond L, Kumm J, Giudice LC, Davis RW.},
journal = {Proc Natl Acad Sci U S A},
year = {2005},
doi = {10.1073/pnas.0503236102},
pmid = {15911771}
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@article{lin170758,
title = {Survival of probiotic lactobacilli in acidic environments is enhanced in the presence of metabolizable sugars.},
author = {Corcoran BM, Stanton C, Fitzgerald GF, Ross RP.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.6.3060-3067.2005},
pmid = {15933002}
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@article{lin170867,
title = {Identification and molecular cloning of a novel glycoside hydrolase family of core 1 type O-glycan-specific endo-alpha-N-acetylgalactosaminidase from Bifidobacterium longum.},
author = {Fujita K, Oura F, Nagamine N, Katayama T, Hiratake J, Sakata K, Kumagai H, Yamamoto K.},
journal = {J Biol Chem},
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title = {Enzymatic characterization of a maltogenic amylase from Lactobacillus gasseri ATCC 33323 expressed in Escherichia coli.},
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title = {Ecological behavior of Lactobacillus reuteri 100-23 is affected by mutation of the luxS gene.},
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journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.12.8419-8425.2005},
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title = {High-Frequency Plasmid Transduction by Lactobacillus gasseri Bacteriophage phiadh.},
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title = {Bile salt hydrolase activity in probiotics.},
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journal = {Appl Environ Microbiol},
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title = {Predicting cis-acting elements of Lactobacillus plantarum by comparative genomics with different taxonomic subgroups.},
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title = {Comparative genomics and transcriptional analysis of prophages identified in the genomes of Lactobacillus gasseri, Lactobacillus salivarius, and Lactobacillus casei.},
author = {Ventura M, Canchaya C, Bernini V, Altermann E, Barrangou R, McGrath S, Claesson MJ, Li Y, Leahy S, Walker CD, Zink R, Neviani E, Steele J, Broadbent J, Klaenhammer TR, Fitzgerald GF, O'toole PW, van Sinderen D},
journal = {Appl Environ Microbiol},
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title = {In vitro fermentation of breast milk oligosaccharides by Bifidobacterium infantis and Lactobacillus gasseri.},
author = {Ward RE, Ninonuevo M, Mills DA, Lebrilla CB, German JB.},
journal = {Appl Environ Microbiol},
year = {2006},
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title = {Similarity and differences in the Lactobacillus acidophilus group identified by polyphasic analysis and comparative genomics.},
author = {Berger B, Pridmore RD, Barretto C, Delmas-Julien F, Schreiber K, Arigoni F, Brussow H.},
journal = {J Bacteriol},
year = {2007},
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@article{lin170841,
title = {Proteomic approach for characterization of hop-inducible proteins in Lactobacillus brevis.},
author = {Behr J, Israel L, Ganzle MG, Vogel RF.},
journal = {Appl Environ Microbiol},
year = {2007},
doi = {10.1128/aem.00124-07},
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@article{lin170846,
title = {Aspartate biosynthesis is essential for the growth of Streptococcus thermophilus in milk, and aspartate availability modulates the level of urease activity.},
author = {Arioli S, Monnet C, Guglielmetti S, Parini C, De Noni I, Hogenboom J, Halami PM, Mora D.},
journal = {Appl Environ Microbiol},
year = {2007},
doi = {10.1128/aem.00533-07},
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@article{lin16456,
title = {Mutational and biochemical analyses of the endolysin Lys(gaY) encoded by the Lactobacillus gasseri JCM 1131T phage phi gaY.},
author = {Sugahara K, Yokoi KJ, Nakamura Y, Nishino T, Yamakawa A, Taketo A, Kodaira K},
journal = {Gene},
year = {2007},
doi = {10.1016/j.gene.2007.08.023},
pmid = {17920212}
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@article{lin16455,
title = {Extracellular secretion of a maltogenic amylase from Lactobacillus gasseri ATCC33323 in Lactococcus lactis MG1363 and its application on the production of branched maltooligosaccharides.},
author = {Cho MH, Park SE, Lee MH, Ha SJ, Kim HY, Kim MJ, Lee SJ, Madsen SM, Park CS},
journal = {J Microbiol Biotechnol},
year = {2007},
pmid = {18062231}
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@article{lin16454,
title = {ClpL is essential for induction of thermotolerance and is potentially part of the HrcA regulon in Lactobacillus gasseri.},
author = {Suokko A, Poutanen M, Savijoki K, Kalkkinen N, Varmanen P},
journal = {Proteomics},
year = {2008},
doi = {10.1002/pmic.200700925},
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@article{lin16453,
title = {Inhibition of Neisseria gonorrhoeae epithelial cell interactions by vaginal Lactobacillus species.},
author = {Spurbeck RR, Arvidson CG},
journal = {Infect Immun},
year = {2008},
doi = {10.1128/IAI.00101-08},
pmid = {18411284}
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@article{lin170819,
title = {Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria.},
author = {Liu M, Nauta A, Francke C, Siezen RJ.},
journal = {Appl Environ Microbiol},
year = {2008},
doi = {10.1128/aem.00150-08},
pmid = {18539796}
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@article{lin16452,
title = {Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism.},
author = {Azcarate-Peril MA, Altermann E, Goh YJ, Tallon R, Sanozky-Dawes RB, Pfeiler EA, O'Flaherty S, Buck BL, Dobson A, Duong T, Miller MJ, Barrangou R, Klaenhammer TR},
journal = {Appl Environ Microbiol},
year = {2008},
doi = {10.1128/AEM.00054-08},
pmid = {18539810}
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@article{lin16451,
title = {Identification of five phospho-beta-glycosidases from Lactobacillus gasseri ATCC33323T cultured in lactose medium.},
author = {Nagaoka S, Honda H, Ohshima S, Kawai Y, Kitazawa H, Tateno Y, Yamazaki Y, Saito T},
journal = {Biosci Biotechnol Biochem},
year = {2008},
doi = {10.1271/bbb.80089},
pmid = {18603798}
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@article{lin16450,
title = {DNA sequencing and homologous expression of a small peptide conferring immunity to gassericin A, a circular bacteriocin produced by Lactobacillus gasseri LA39.},
author = {Kawai Y, Kusnadi J, Kemperman R, Kok J, Ito Y, Endo M, Arakawa K, Uchida H, Nishimura J, Kitazawa H, Saito T},
journal = {Appl Environ Microbiol},
year = {2008},
doi = {10.1128/AEM.02485-08},
pmid = {19114506}
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@article{lin16449,
title = {Characterization of temperate Lactobacillus gasseri phage LgaI and its impact as prophage on autolysis of its lysogenic host strains.},
author = {Ismail EA, Neve H, Geis A, Heller KJ},
journal = {Curr Microbiol},
year = {2009},
doi = {10.1007/s00284-009-9384-0},
pmid = {19296164}
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@article{lin170778,
title = {Cd1d-dependent regulation of bacterial colonization in the intestine of mice.},
author = {Nieuwenhuis EE, Matsumoto T, Lindenbergh D, Willemsen R, Kaser A, Simons-Oosterhuis Y, Brugman S, Yamaguchi K, Ishikawa H, Aiba Y, Koga Y, Samsom JN, Oshima K, Kikuchi M, Escher JC, Hattori M, Onderdonk AB, Blumberg RS.},
journal = {J Clin Invest},
year = {2009},
doi = {10.1172/jci36509},
pmid = {19349688}
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@article{lin170802,
title = {In silico prediction of horizontal gene transfer events in Lactobacillus bulgaricus and Streptococcus thermophilus reveals protocooperation in yogurt manufacturing.},
author = {Liu M, Siezen RJ, Nauta A.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.02898-08},
pmid = {19395564}
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@article{lin170810,
title = {Heme and menaquinone induced electron transport in lactic acid bacteria.},
author = {Brooijmans R, Smit B, Santos F, van Riel J, de Vos WM, Hugenholtz J.},
journal = {Microb Cell Fact},
year = {2009},
doi = {10.1186/1475-2859-8-28},
pmid = {19480672}
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@article{lin170825,
title = {Allelic variation of bile salt hydrolase genes in Lactobacillus salivarius does not determine bile resistance levels.},
author = {Fang F, Li Y, Bumann M, Raftis EJ, Casey PG, Cooney JC, Walsh MA, O'Toole PW.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00506-09},
pmid = {19592587}
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@article{lin16448,
title = {Conjugative plasmid from Lactobacillus gasseri LA39 that carries genes for production of and immunity to the circular bacteriocin gassericin A.},
author = {Ito Y, Kawai Y, Arakawa K, Honme Y, Sasaki T, Saito T},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/AEM.00195-09},
pmid = {19666732}
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@article{lin16447,
title = {Immunomodulation in gut-associated lymphoid tissue of neonatal chicks by immunobiotic diets.},
author = {Sato K, Takahashi K, Tohno M, Miura Y, Kamada T, Ikegami S, Kitazawa H},
journal = {Poult Sci},
year = {2009},
doi = {10.3382/ps.2009-00291},
pmid = {19903951}
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@article{lin16446,
title = {Inulin and levan synthesis by probiotic Lactobacillus gasseri strains: characterization of three novel fructansucrase enzymes and their fructan products.},
author = {Anwar MA, Kralj S, Pique AV, Leemhuis H, van der Maarel MJEC, Dijkhuizen L},
journal = {Microbiology (Reading)},
year = {2010},
doi = {10.1099/mic.0.036616-0},
pmid = {20075040}
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@article{lin170820,
title = {The proteolytic system of lactic acid bacteria revisited: a genomic comparison.},
author = {Liu M, Bayjanov JR, Renckens B, Nauta A, Siezen RJ.},
journal = {BMC Genomics},
year = {2010},
doi = {10.1186/1471-2164-11-36},
pmid = {20078865}
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@article{lin16445,
title = {The PTS transporters of Lactobacillus gasseri ATCC 33323.},
author = {Francl AL, Thongaram T, Miller MJ},
journal = {BMC Microbiol},
year = {2010},
doi = {10.1186/1471-2180-10-77},
pmid = {20226062}
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title = {Genome sequence and comparative genome analysis of Lactobacillus casei: insights into their niche-associated evolution.},
author = {Cai H, Thompson R, Budinich MF, Broadbent JR, Steele JL.},
journal = {Genome Biol Evol},
year = {2009},
doi = {10.1093/gbe/evp019},
pmid = {20333194}
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@article{lin170794,
title = {Origin of the putrescine-producing ability of the coagulase-negative bacterium Staphylococcus epidermidis 2015B.},
author = {Coton E, Mulder N, Coton M, Pochet S, Trip H, Lolkema JS.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.00441-10},
pmid = {20581187}
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@article{lin170752,
title = {Oxalate-degrading activity in Bifidobacterium animalis subsp. lactis: impact of acidic conditions on the transcriptional levels of the oxalyl coenzyme A (CoA) decarboxylase and formyl-CoA transferase genes.},
author = {Turroni S, Bendazzoli C, Dipalo SC, Candela M, Vitali B, Gotti R, Brigidi P.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.00844-10},
pmid = {20601517}
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@article{lin170842,
title = {Characterization of Lactococcus lactis phage 949 and comparison with other lactococcal phages.},
author = {Samson JE, Moineau S.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.00796-10},
pmid = {20802084}
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@article{lin16444,
title = {Characterization of a novel Lactobacillus species closely related to Lactobacillus johnsonii using a combination of molecular and comparative genomics methods.},
author = {Sarmiento-Rubiano LA, Berger B, Moine D, Zuniga M, Perez-Martinez G, Yebra MJ},
journal = {BMC Genomics},
year = {2010},
doi = {10.1186/1471-2164-11-504},
pmid = {20849602}
}
@article{lin170880,
title = {Molecular cloning and characterization of a beta-L-Arabinobiosidase in Bifidobacterium longum that belongs to a novel glycoside hydrolase family.},
author = {Fujita K, Sakamoto S, Ono Y, Wakao M, Suda Y, Kitahara K, Suganuma T.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m110.190512},
pmid = {21149454}
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@article{lin170815,
title = {Phylogenomic reconstruction of lactic acid bacteria: an update.},
author = {Zhang ZG, Ye ZQ, Yu L, Shi P.},
journal = {BMC Evol Biol},
year = {2011},
doi = {10.1186/1471-2148-11-1},
pmid = {21194491}
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@article{lin170826,
title = {Probiotics genomics.},
author = {Siezen RJ, Wilson G.},
journal = {Microb Biotechnol},
year = {2010},
doi = {10.1111/j.1751-7915.2009.00159.x},
pmid = {21255300}
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@article{lin170812,
title = {Complete sequencing and pan-genomic analysis of Lactobacillus delbrueckii subsp. bulgaricus reveal its genetic basis for industrial yogurt production.},
author = {Hao P, Zheng H, Yu Y, Ding G, Gu W, Chen S, Yu Z, Ren S, Oda M, Konno T, Wang S, Li X, Ji ZS, Zhao G.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0015964},
pmid = {21264216}
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@article{lin170763,
title = {Evolutionary history of the OmpR/IIIA family of signal transduction two component systems in Lactobacillaceae and Leuconostocaceae.},
author = {Zuniga M, Gomez-Escoin CL, Gonzalez-Candelas F.},
journal = {BMC Evol Biol},
year = {2011},
doi = {10.1186/1471-2148-11-34},
pmid = {21284862}
}
@article{lin170727,
title = {Construction of vectors for inducible and constitutive gene expression in Lactobacillus.},
author = {Duong T, Miller MJ, Barrangou R, Azcarate-Peril MA, Klaenhammer TR.},
journal = {Microb Biotechnol},
year = {2011},
doi = {10.1111/j.1751-7915.2010.00200.x},
pmid = {21375708}
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@article{lin170785,
title = {Comparative genomics of Lactobacillus.},
author = {Kant R, Blom J, Palva A, Siezen RJ, de Vos WM.},
journal = {Microb Biotechnol},
year = {2011},
doi = {10.1111/j.1751-7915.2010.00215.x},
pmid = {21375712}
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@article{lin170847,
title = {Influence of antimicrobial feed additives on broiler commensal posthatch gut microbiota development and performance.},
author = {Torok VA, Allison GE, Percy NJ, Ophel-Keller K, Hughes RJ.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.02300-10},
pmid = {21441326}
}
@article{lin170833,
title = {The genome of Erysipelothrix rhusiopathiae, the causative agent of swine erysipelas, reveals new insights into the evolution of firmicutes and the organism's intracellular adaptations.},
author = {Ogawa Y, Ooka T, Shi F, Ogura Y, Nakayama K, Hayashi T, Shimoji Y.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.01500-10},
pmid = {21478354}
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@article{lin16443,
title = {Group-specific comparison of four lactobacilli isolated from human sources using differential blast analysis.},
author = {Altermann E, Klaenhammer TR},
journal = {Genes Nutr},
year = {2010},
doi = {10.1007/s12263-010-0191-9},
pmid = {21484153}
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@article{lin170619,
title = {Hydrolytic fate of deoxynivalenol-3-glucoside during digestion.},
author = {Berthiller F, Krska R, Domig KJ, Kneifel W, Juge N, Schuhmacher R, Adam G.},
journal = {Toxicol Lett},
year = {2011},
doi = {10.1016/j.toxlet.2011.08.006},
pmid = {21878373}
}
@article{lin170694,
title = {Assessment of Lactobacillus gasseri as a candidate oral vaccine vector.},
author = {Stoeker L, Nordone S, Gunderson S, Zhang L, Kajikawa A, LaVoy A, Miller M, Klaenhammer TR, Dean GA.},
journal = {Clin Vaccine Immunol},
year = {2011},
doi = {10.1128/cvi.05277-11},
pmid = {21900526}
}
@article{lin170876,
title = {Characterization of a novel beta-L-Arabinofuranosidase in Bifidobacterium longum: functional elucidation of A DUF1680 family member.},
author = {Fujita K, Takashi Y, Obuchi E, Kitahara K, Suganuma T.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m111.248690},
pmid = {21914802}
}
@article{lin170617,
title = {The hsp 16 gene of the probiotic Lactobacillus acidophilus is differently regulated by salt, high temperature and acidic stresses, as revealed by reverse transcription quantitative PCR (qRT-PCR) analysis.},
author = {Capozzi V, Arena MP, Crisetti E, Spano G, Fiocco D.},
journal = {Int J Mol Sci},
year = {2011},
doi = {10.3390/ijms12085390},
pmid = {21954366}
}
@article{lin170811,
title = {Enhancing the stress responses of probiotics for a lifestyle from gut to product and back again.},
author = {Mills S, Stanton C, Fitzgerald GF, Ross RP.},
journal = {Microb Cell Fact},
year = {2011},
doi = {10.1186/1475-2859-10-s1-s19},
pmid = {21995734}
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@article{lin170824,
title = {Genetic screening of functional properties of lactic acid bacteria in a fermented pearl millet slurry and in the metagenome of fermented starchy foods.},
author = {Turpin W, Humblot C, Guyot JP.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.05988-11},
pmid = {22003019}
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@article{lin170831,
title = {Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera.},
author = {Lukjancenko O, Ussery DW, Wassenaar TM.},
journal = {Microb Ecol},
year = {2012},
doi = {10.1007/s00248-011-9948-y},
pmid = {22031452}
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@article{lin170807,
title = {Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut.},
author = {Ventura M, Turroni F, van Sinderen D.},
journal = {Bioeng Bugs},
year = {2012},
doi = {10.4161/bbug.18540},
pmid = {22095053}
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@article{lin170769,
title = {Evidence of two functionally distinct ornithine decarboxylation systems in lactic acid bacteria.},
author = {Romano A, Trip H, Lonvaud-Funel A, Lolkema JS, Lucas PM.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.07161-11},
pmid = {22247134}
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@article{lin170832,
title = {Lactobacillus adhesion to mucus.},
author = {Van Tassell ML, Miller MJ.},
journal = {Nutrients},
year = {2011},
doi = {10.3390/nu3050613},
pmid = {22254114}
}
@article{lin16442,
title = {Identification of lactose phosphotransferase systems in Lactobacillus gasseri ATCC 33323 required for lactose utilization.},
author = {Francl AL, Hoeflinger JL, Miller MJ},
journal = {Microbiology (Reading)},
year = {2012},
doi = {10.1099/mic.0.052928-0},
pmid = {22282520}
}
@article{lin170764,
title = {High efficiency recombineering in lactic acid bacteria.},
author = {van Pijkeren JP, Britton RA.},
journal = {Nucleic Acids Res},
year = {2012},
doi = {10.1093/nar/gks147},
pmid = {22328729}
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@article{lin170784,
title = {Tracing lifestyle adaptation in prokaryotic genomes.},
author = {Altermann E.},
journal = {Front Microbiol},
year = {2012},
doi = {10.3389/fmicb.2012.00048},
pmid = {22363326}
}
@article{lin170748,
title = {Molecular profiling of oral microbiota in jawbone samples of bisphosphonate-related osteonecrosis of the jaw.},
author = {Wei X, Pushalkar S, Estilo C, Wong C, Farooki A, Fornier M, Bohle G, Huryn J, Li Y, Doty S, Saxena D.},
journal = {Oral Dis},
year = {2012},
doi = {10.1111/j.1601-0825.2012.01916.x},
pmid = {22443347}
}
@article{lin16441,
title = {Purification and characterization of two phospho-beta-galactosidases, LacG1 and LacG2, from Lactobacillus gasseri ATCC33323(T).},
author = {Honda H, Nagaoka S, Kawai Y, Kemperman R, Kok J, Yamazaki Y, Tateno Y, Kitazawa H, Saito T},
journal = {J Gen Appl Microbiol},
year = {2012},
doi = {10.2323/jgam.58.11},
pmid = {22449746}
}
@article{lin170843,
title = {Optimizing read mapping to reference genomes to determine composition and species prevalence in microbial communities.},
author = {Martin J, Sykes S, Young S, Kota K, Sanka R, Sheth N, Orvis J, Sodergren E, Wang Z, Weinstock GM, Mitreva M.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0036427},
pmid = {22719831}
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@article{lin170623,
title = {Evaluation of 16S rDNA-based community profiling for human microbiome research.},
author = {Jumpstart Consortium Human Microbiome Project Data Generation Working Group.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0039315},
pmid = {22720093}
}
@article{lin170863,
title = {Brevibacterium ammoniilyticum sp. nov., an ammonia-degrading bacterium isolated from sludge of a wastewater treatment plant.},
author = {Kim J, Srinivasan S, You T, Bang JJ, Park S, Lee SS.},
journal = {Int J Syst Evol Microbiol},
year = {2013},
doi = {10.1099/ijs.0.039305-0},
pmid = {22729022}
}
@article{lin170850,
title = {Metabolism of oligosaccharides and starch in lactobacilli: a review.},
author = {Ganzle MG, Follador R.},
journal = {Front Microbiol},
year = {2012},
doi = {10.3389/fmicb.2012.00340},
pmid = {23055996}
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@article{lin170612,
title = {The application of genetics methods to differentiation of three Lactobacillus species of human origin.},
author = {Gosiewski T, Chmielarczyk A, Strus M, Brzychczy-Wloch M, Heczko PB.},
journal = {Ann Microbiol},
year = {2012},
doi = {10.1007/s13213-011-0395-2},
pmid = {23144638}
}
@article{lin170756,
title = {Phylogenetic identification of bacterial MazF toxin protein motifs among probiotic strains and foodborne pathogens and potential implications of engineered probiotic intervention in food.},
author = {Yan X, Gurtler JB, Fratamico PM, Hu J, Juneja VK.},
journal = {Cell Biosci},
year = {2012},
doi = {10.1186/2045-3701-2-39},
pmid = {23186337}
}
@article{lin170861,
title = {Lactobacillus curieae sp. nov., isolated from stinky tofu brine.},
author = {Lei X, Sun G, Xie J, Wei D.},
journal = {Int J Syst Evol Microbiol},
year = {2013},
doi = {10.1099/ijs.0.041830-0},
pmid = {23223818}
}
@article{lin170862,
title = {Lactobacillus hokkaidonensis sp. nov., isolated from subarctic timothy grass (Phleum pratense L.) silage.},
author = {Tohno M, Kitahara M, Uegaki R, Irisawa T, Ohkuma M, Tajima K.},
journal = {Int J Syst Evol Microbiol},
year = {2013},
doi = {10.1099/ijs.0.047027-0},
pmid = {23223820}
}
@article{lin170830,
title = {Methods of combinatorial optimization to reveal factors affecting gene length.},
author = {Bolshoy A, Tatarinova T.},
journal = {Bioinform Biol Insights},
year = {2012},
doi = {10.4137/bbi.s10525},
pmid = {23300345}
}
@article{lin170780,
title = {Influence of the vaginal microbiota on toxic shock syndrome toxin 1 production by Staphylococcus aureus.},
author = {MacPhee RA, Miller WL, Gloor GB, McCormick JK, Hammond JA, Burton JP, Reid G.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.02908-12},
pmid = {23315732}
}
@article{lin170776,
title = {Genome sequence and analysis of Lactobacillus helveticus.},
author = {Cremonesi P, Chessa S, Castiglioni B.},
journal = {Front Microbiol},
year = {2012},
doi = {10.3389/fmicb.2012.00435},
pmid = {23335916}
}
@article{lin16440,
title = {Characterization of a Lactobacillus gasseri JCM 1131T lipoteichoic acid with a novel glycolipid anchor structure.},
author = {Shiraishi T, Yokota S, Morita N, Fukiya S, Tomita S, Tanaka N, Okada S, Yokota A},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/AEM.00243-13},
pmid = {23503311}
}
@article{lin384913,
title = {Spontaneous mutation reveals influence of exopolysaccharide on Lactobacillus johnsonii surface characteristics.},
author = {Horn N, Wegmann U, Dertli E, Mulholland F, Collins SR, Waldron KW, Bongaerts RJ, Mayer MJ, Narbad A.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0059957},
pmid = {23544114}
}
@article{lin170837,
title = {Relevance and application of sortase and sortase-dependent proteins in lactic acid bacteria.},
author = {Call EK, Klaenhammer TR.},
journal = {Front Microbiol},
year = {2013},
doi = {10.3389/fmicb.2013.00073},
pmid = {23579319}
}
@article{lin170767,
title = {Catabolic flexibility of mammalian-associated lactobacilli.},
author = {O'Donnell MM, O'Toole PW, Ross RP.},
journal = {Microb Cell Fact},
year = {2013},
doi = {10.1186/1475-2859-12-48},
pmid = {23680304}
}
@article{lin170828,
title = {The highly autoaggregative and adhesive phenotype of the vaginal Lactobacillus plantarum strain CMPG5300 is sortase dependent.},
author = {Malik S, Petrova MI, Claes IJ, Verhoeven TL, Busschaert P, Vaneechoutte M, Lievens B, Lambrichts I, Siezen RJ, Balzarini J, Vanderleyden J, Lebeer S.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.00926-13},
pmid = {23709503}
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@article{lin170751,
title = {Characterization of the genome of the dairy Lactobacillus helveticus bacteriophage {Phi}AQ113.},
author = {Zago M, Scaltriti E, Rossetti L, Guffanti A, Armiento A, Fornasari ME, Grolli S, Carminati D, Brini E, Pavan P, Felsani A, D'Urzo A, Moles A, Claude JB, Grandori R, Ramoni R, Giraffa G.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.00620-13},
pmid = {23728811}
}
@article{lin170806,
title = {pH gradient and distribution of streptococci, lactobacilli, prevotellae, and fusobacteria in carious dentine.},
author = {Kianoush N, Nguyen KA, Browne GV, Simonian M, Hunter N.},
journal = {Clin Oral Investig},
year = {2014},
doi = {10.1007/s00784-013-1009-0},
pmid = {23771212}
}
@article{lin170822,
title = {Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform.},
author = {Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.01043-13},
pmid = {23793624}
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@article{lin170604,
title = {Characterization and in vitro properties of oral lactobacilli in breastfed infants.},
author = {Vestman NR, Timby N, Holgerson PL, Kressirer CA, Claesson R, Domellof M, Ohman C, Tanner AC, Hernell O, Johansson I.},
journal = {BMC Microbiol},
year = {2013},
doi = {10.1186/1471-2180-13-193},
pmid = {23945215}
}
@article{lin170680,
title = {Draft Genome Sequence of Lactobacillus gasseri Strain 2016.},
author = {Karlyshev AV, Melnikov VG, Kosarev IV, Khlebnikov VC, Sukhikh GT, Abramov VM.},
journal = {Genome Announc},
year = {2013},
doi = {10.1128/genomea.00624-13},
pmid = {23969051}
}
@article{lin170821,
title = {Fate of ingested Clostridium difficile spores in mice.},
author = {Howerton A, Patra M, Abel-Santos E.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0072620},
pmid = {24023628}
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@article{lin170738,
title = {Comparative Analysis of two Component Signal Transduction Systems of the Lactobacillus Acidophilus Group.},
author = {Cui Y, Qu X.},
journal = {Braz J Microbiol},
year = {2011},
doi = {10.1590/s1517-83822011000100019},
pmid = {24031616}
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@article{lin170813,
title = {Abilities of the mCP Agar method and CRENAME alpha toxin-specific real-time PCR assay to detect Clostridium perfringens spores in drinking water.},
author = {Maheux AF, Berube E, Boudreau DK, Villeger R, Cantin P, Boissinot M, Bissonnette L, Bergeron MG.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.02791-13},
pmid = {24077714}
}
@article{lin170737,
title = {Molecular identification of Lactobacillus spp. associated with puba, a Brazilian fermented cassava food.},
author = {Crispim SM, Nascimento AM, Costa PS, Moreira JL, Nunes AC, Nicoli JR, Lima FL, Mota VT, Nardi RM.},
journal = {Braz J Microbiol},
year = {2013},
doi = {10.1590/s1517-83822013005000007},
pmid = {24159278}
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@article{lin170705,
title = {Evaluation of phytate-degrading Lactobacillus culture administration to broiler chickens.},
author = {Askelson TE, Campasino A, Lee JT, Duong T.},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.03155-13},
pmid = {24271165}
}
@article{lin170878,
title = {Characterization of a novel beta-L-arabinofuranosidase in Bifidobacterium longum: functional elucidation of a DUF1680 protein family member.},
author = {Fujita K, Takashi Y, Obuchi E, Kitahara K, Suganuma T.},
journal = {J Biol Chem},
year = {2014},
doi = {10.1074/jbc.m113.528711},
pmid = {24385433}
}
@article{lin384936,
title = {Lipoteichoic acids, phosphate-containing polymers in the envelope of gram-positive bacteria.},
author = {Schneewind O, Missiakas D.},
journal = {J Bacteriol},
year = {2014},
doi = {10.1128/jb.01155-13},
pmid = {24415723}
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@article{lin16438,
title = {Lactobacillus rodentium sp. nov., from the digestive tract of wild rodents.},
author = {Killer J, Havlik J, Vlkova E, Rada V, Pechar R, Benada O, Kopecny J, Kofronova O, Sechovcova H},
journal = {Int J Syst Evol Microbiol},
year = {2014},
doi = {10.1099/ijs.0.054924-0},
pmid = {24478214}
}
@article{lin170757,
title = {Comparative functional genomics of Lactobacillus spp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment.},
author = {Mendes-Soares H, Suzuki H, Hickey RJ, Forney LJ.},
journal = {J Bacteriol},
year = {2014},
doi = {10.1128/jb.01439-13},
pmid = {24488312}
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@article{lin16437,
title = {Sustained delivery of commensal bacteria from pod-intravaginal rings.},
author = {Gunawardana M, Mullen M, Yoo J, Webster P, Moss JA, Baum MM},
journal = {Antimicrob Agents Chemother},
year = {2014},
doi = {10.1128/AAC.02542-13},
pmid = {24492360}
}
@article{lin170788,
title = {Polyethylene glycol-based hydrogels for controlled release of the antimicrobial subtilosin for prophylaxis of bacterial vaginosis.},
author = {Sundara Rajan S, Cavera VL, Zhang X, Singh Y, Chikindas ML, Sinko PJ.},
journal = {Antimicrob Agents Chemother},
year = {2014},
doi = {10.1128/aac.02446-14},
pmid = {24566190}
}
@article{lin170789,
title = {Comparative genomics analysis of Lactobacillus species associated with weight gain or weight protection.},
author = {Drissi F, Merhej V, Angelakis E, El Kaoutari A, Carriere F, Henrissat B, Raoult D.},
journal = {Nutr Diabetes},
year = {2014},
doi = {10.1038/nutd.2014.6},
pmid = {24567124}
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@article{lin170753,
title = {Experimental approaches to investigating the vaginal biofilm microbiome.},
author = {Baum MM, Gunawardana M, Webster P.},
journal = {Methods Mol Biol},
year = {2014},
doi = {10.1007/978-1-4939-0467-9_7},
pmid = {24664828}
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@article{lin16436,
title = {Spontaneously induced prophages in Lactobacillus gasseri contribute to horizontal gene transfer.},
author = {Baugher JL, Durmaz E, Klaenhammer TR},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/AEM.04092-13},
pmid = {24682298}
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@article{lin170844,
title = {Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.},
author = {Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.},
journal = {Genes (Basel)},
year = {2011},
doi = {10.3390/genes2040869},
pmid = {24710297}
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@article{lin170866,
title = {Crystallization and preliminary X-ray diffraction analysis of a novel beta-L-arabinofuranosidase (HypBA1) from Bifidobacterium longum.},
author = {Zhu Z, He M, Huang CH, Ko TP, Zeng YF, Huang YN, Jia S, Lu F, Liu JR, Guo RT.},
journal = {Acta Crystallogr F Struct Biol Commun},
year = {2014},
doi = {10.1107/s2053230x14001812},
pmid = {24817727}
}
@article{lin16435,
title = {Development of an integration mutagenesis system in Lactobacillus gasseri.},
author = {Selle K, Goh YJ, O'Flaherty S, Klaenhammer TR},
journal = {Gut Microbes},
year = {2014},
doi = {10.4161/gmic.29101},
pmid = {24837903}
}
@article{lin170800,
title = {A recently transferred cluster of bacterial genes in Trichomonas vaginalis--lateral gene transfer and the fate of acquired genes.},
author = {Strese A, Backlund A, Alsmark C.},
journal = {BMC Evol Biol},
year = {2014},
doi = {10.1186/1471-2148-14-119},
pmid = {24898731}
}
@article{lin170808,
title = {Benzylidene acylhydrazides inhibit chlamydial growth in a type III secretion- and iron chelation-independent manner.},
author = {Bao X, Gylfe A, Sturdevant GL, Gong Z, Xu S, Caldwell HD, Elofsson M, Fan H.},
journal = {J Bacteriol},
year = {2014},
doi = {10.1128/jb.01677-14},
pmid = {24914180}
}
@article{lin170664,
title = {Improved Draft Genome Sequence of Probiotic Strain Lactobacillus gasseri K7.},
author = {Treven P, Trmcic A, Bogovic Matijasic B, Rogelj I.},
journal = {Genome Announc},
year = {2014},
doi = {10.1128/genomea.00725-14},
pmid = {25059871}
}
@article{lin170724,
title = {Functional genomics of lactic acid bacteria: from food to health.},
author = {Douillard FP, de Vos WM.},
journal = {Microb Cell Fact},
year = {2014},
doi = {10.1186/1475-2859-13-s1-s8},
pmid = {25186768}
}
@article{lin170766,
title = {Lactobacillus rossiae, a vitamin B12 producer, represents a metabolically versatile species within the Genus Lactobacillus.},
author = {De Angelis M, Bottacini F, Fosso B, Kelleher P, Calasso M, Di Cagno R, Ventura M, Picardi E, van Sinderen D, Gobbetti M.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0107232},
pmid = {25264826}
}
@article{lin170840,
title = {Metagenome-wide association of microbial determinants of host phenotype in Drosophila melanogaster.},
author = {Chaston JM, Newell PD, Douglas AE.},
journal = {mBio},
year = {2014},
doi = {10.1128/mbio.01631-14},
pmid = {25271286}
}
@article{lin170616,
title = {Rapid species-level identification of vaginal and oral lactobacilli using MALDI-TOF MS analysis and 16S rDNA sequencing.},
author = {Anderson AC, Sanunu M, Schneider C, Clad A, Karygianni L, Hellwig E, Al-Ahmad A.},
journal = {BMC Microbiol},
year = {2014},
doi = {10.1186/s12866-014-0312-5},
pmid = {25495549}
}
@article{lin16434,
title = {Sortase-deficient lactobacilli: effect on immunomodulation and gut retention.},
author = {Call EK, Goh YJ, Selle K, Klaenhammer TR, O'Flaherty S},
journal = {Microbiology (Reading)},
year = {2014},
doi = {10.1099/mic.0.000007},
pmid = {25500495}
}
@article{lin16433,
title = {Lactobacillus gasseri requires peptides, not proteins or free amino acids, for growth in milk.},
author = {Arakawa K, Matsunaga K, Takihiro S, Moritoki A, Ryuto S, Kawai Y, Masuda T, Miyamoto T},
journal = {J Dairy Sci},
year = {2014},
doi = {10.3168/jds.2014-8860},
pmid = {25529420}
}
@article{lin170728,
title = {Polyunsaturated fatty acids modify expression of TGF-beta in a co-culture model ultilising human colorectal cells and human peripheral blood mononuclear cells exposed to Lactobacillus gasseri, Escherichia coli and Staphylococcus aureus.},
author = {Bentley-Hewitt KL, De Guzman CE, Ansell J, Mandimika T, Narbad A, Lund EK.},
journal = {Eur J Lipid Sci Technol},
year = {2014},
doi = {10.1002/ejlt.201300337},
pmid = {25598698}
}
@article{lin170771,
title = {Engineered commensal bacteria reprogram intestinal cells into glucose-responsive insulin-secreting cells for the treatment of diabetes.},
author = {Duan FF, Liu JH, March JC.},
journal = {Diabetes},
year = {2015},
doi = {10.2337/db14-0635},
pmid = {25626737}
}
@article{lin170835,
title = {Lactobacillus species as biomarkers and agents that can promote various aspects of vaginal health.},
author = {Petrova MI, Lievens E, Malik S, Imholz N, Lebeer S.},
journal = {Front Physiol},
year = {2015},
doi = {10.3389/fphys.2015.00081},
pmid = {25859220}
}
@article{lin170787,
title = {Molecular Assay for Detection of Genetic Markers Associated with Decreased Susceptibility to Cephalosporins in Neisseria gonorrhoeae.},
author = {Peterson SW, Martin I, Demczuk W, Bharat A, Hoang L, Wylie J, Allen V, Lefebvre B, Tyrrell G, Horsman G, Haldane D, Garceau R, Wong T, Mulvey MR.},
journal = {J Clin Microbiol},
year = {2015},
doi = {10.1128/jcm.00493-15},
pmid = {25878350}
}
@article{lin170765,
title = {Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260(T), a psychrotrophic lactic acid bacterium isolated from silage.},
author = {Tanizawa Y, Tohno M, Kaminuma E, Nakamura Y, Arita M.},
journal = {BMC Genomics},
year = {2015},
doi = {10.1186/s12864-015-1435-2},
pmid = {25879859}
}
@article{lin16432,
title = {Lactobacillus gasseri SBT2055 suppresses fatty acid release through enlargement of fat emulsion size in vitro and promotes fecal fat excretion in healthy Japanese subjects.},
author = {Ogawa A, Kobayashi T, Sakai F, Kadooka Y, Kawasaki Y},
journal = {Lipids Health Dis},
year = {2015},
doi = {10.1186/s12944-015-0019-0},
pmid = {25884980}
}
@article{lin16431,
title = {A Moonlighting Enolase from Lactobacillus gasseri does not Require Enzymatic Activity to Inhibit Neisseria gonorrhoeae Adherence to Epithelial Cells.},
author = {Spurbeck RR, Harris PT, Raghunathan K, Arvidson DN, Arvidson CG},
journal = {Probiotics Antimicrob Proteins},
year = {2015},
doi = {10.1007/s12602-015-9192-8},
pmid = {25917402}
}
@article{lin170792,
title = {Lengths of Orthologous Prokaryotic Proteins Are Affected by Evolutionary Factors.},
author = {Tatarinova T, Salih B, Dien Bard J, Cohen I, Bolshoy A.},
journal = {Biomed Res Int},
year = {2015},
doi = {10.1155/2015/786861},
pmid = {26114113}
}
@article{lin170739,
title = {Estimation of bacterial hydrogen sulfide production in vitro.},
author = {Basic A, Blomqvist S, Carlen A, Dahlen G.},
journal = {J Oral Microbiol},
year = {2015},
doi = {10.3402/jom.v7.28166},
pmid = {26130377}
}
@article{lin170829,
title = {Novel riboswitch-binding flavin analog that protects mice against Clostridium difficile infection without inhibiting cecal flora.},
author = {Blount KF, Megyola C, Plummer M, Osterman D, O'Connell T, Aristoff P, Quinn C, Chrusciel RA, Poel TJ, Schostarez HJ, Stewart CA, Walker DP, Wuts PG, Breaker RR.},
journal = {Antimicrob Agents Chemother},
year = {2015},
doi = {10.1128/aac.01282-15},
pmid = {26169403}
}
@article{lin170749,
title = {CpG DNA analysis of bacterial STDs.},
author = {Singer M, de Waaij DJ, Morre SA, Ouburg S.},
journal = {BMC Infect Dis},
year = {2015},
doi = {10.1186/s12879-015-1016-7},
pmid = {26179610}
}
@article{lin170760,
title = {Adaptation of the cecal bacterial microbiome of growing pigs in response to resistant starch type 4.},
author = {Metzler-Zebeli BU, Schmitz-Esser S, Mann E, Grull D, Molnar T, Zebeli Q.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.02756-15},
pmid = {26431973}
}
@article{lin170731,
title = {Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes.},
author = {Wang M, Doak TG, Ye Y.},
journal = {Genome Biol},
year = {2015},
doi = {10.1186/s13059-015-0804-0},
pmid = {26527161}
}
@article{lin170793,
title = {FN-Identify: Novel Restriction Enzymes-Based Method for Bacterial Identification in Absence of Genome Sequencing.},
author = {Awad M, Ouda O, El-Refy A, El-Feky FA, Mosa KA, Helmy M.},
journal = {Adv Bioinformatics},
year = {2015},
doi = {10.1155/2015/303605},
pmid = {26880910}
}
@article{lin170856,
title = {A Lactobacillus mutant capable of accumulating long-chain polyphosphates that enhance intestinal barrier function.},
author = {Saiki A, Ishida Y, Segawa S, Hirota R, Nakamura T, Kuroda A.},
journal = {Biosci Biotechnol Biochem},
year = {2016},
doi = {10.1080/09168451.2015.1135041},
pmid = {26966939}
}
@article{lin170781,
title = {Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system.},
author = {Schloss PD, Jenior ML, Koumpouras CC, Westcott SL, Highlander SK.},
journal = {PeerJ},
year = {2016},
doi = {10.7717/peerj.1869},
pmid = {27069806}
}
@article{lin170743,
title = {High-fat diet-induced obesity Rat model: a comparison between Wistar and Sprague-Dawley Rat.},
author = {Marques C, Meireles M, Norberto S, Leite J, Freitas J, Pestana D, Faria A, Calhau C.},
journal = {Adipocyte},
year = {2016},
doi = {10.1080/21623945.2015.1061723},
pmid = {27144092}
}
@article{lin170874,
title = {Reconstruction of Bacterial and Viral Genomes from Multiple Metagenomes.},
author = {Gupta A, Kumar S, Prasoodanan VP, Harish K, Sharma AK, Sharma VK.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.00469},
pmid = {27148174}
}
@article{lin170875,
title = {Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study.},
author = {Odamaki T, Kato K, Sugahara H, Hashikura N, Takahashi S, Xiao JZ, Abe F, Osawa R.},
journal = {BMC Microbiol},
year = {2016},
doi = {10.1186/s12866-016-0708-5},
pmid = {27220822}
}
@article{lin170809,
title = {Multivalent Chromosomal Expression of the Clostridium botulinum Serotype A Neurotoxin Heavy-Chain Antigen and the Bacillus anthracis Protective Antigen in Lactobacillus acidophilus.},
author = {O'Flaherty S, Klaenhammer TR.},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/aem.01533-16},
pmid = {27496774}
}
@article{lin170773,
title = {Safety profile of solid lipid nanoparticles loaded with rosmarinic acid for oral use: in vitro and animal approaches.},
author = {Madureira AR, Nunes S, Campos DA, Fernandes JC, Marques C, Zuzarte M, Zuzarte M, Gullon B, Rodriguez-Alcala LM, Calhau C, Sarmento B, Gomes AM, Pintado MM, Reis F.},
journal = {Int J Nanomedicine},
year = {2016},
doi = {10.2147/ijn.s104623},
pmid = {27536103}
}
@article{lin16428,
title = {Prophylactic Effect of Lactobacillus pentosus strain S-PT84 on Candida Infection and Gastric Inflammation in a Murine Gastrointestinal Candidiasis Model.},
author = {Maekawa T, Ishijima AS, Ida M, Izumo T, Ono Y, Shibata H, Abe S},
journal = {Med Mycol J},
year = {2016},
doi = {10.3314/mmj.16-00012},
pmid = {27904056}
}
@article{lin16427,
title = {Prophylactic Effect of Lactobacillus pentosus strain S-PT84 on Candida Infection and Gastric Inflammation in a Murine Gastrointestinal Candidiasis Model [Errata].},
author = {Maekawa T, Ishijima AS, Ida M, Izumo T, Ono Y, Shibata H, Abe S},
journal = {Med Mycol J},
year = {2016},
doi = {10.3314/mmj.16-00012E},
pmid = {27904074}
}
@article{lin170655,
title = {Lactobacillus gasseri PA-3 Uses the Purines IMP, Inosine and Hypoxanthine and Reduces their Absorption in Rats.},
author = {Yamada N, Saito-Iwamoto C, Nakamura M, Soeda M, Chiba Y, Kano H, Asami Y.},
journal = {Microorganisms},
year = {2017},
doi = {10.3390/microorganisms5010010},
pmid = {28282902}
}
@article{lin170700,
title = {Protective effects and functional mechanisms of Lactobacillus gasseri SBT2055 against oxidative stress.},
author = {Kobatake E, Nakagawa H, Seki T, Miyazaki T.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0177106},
pmid = {28493927}
}
@article{lin170877,
title = {The first crystal structure of a family 129 glycoside hydrolase from a probiotic bacterium reveals critical residues and metal cofactors.},
author = {Sato M, Liebschner D, Yamada Y, Matsugaki N, Arakawa T, Wills SS, Hattie M, Stubbs KA, Ito T, Senda T, Ashida H, Fushinobu S.},
journal = {J Biol Chem},
year = {2017},
doi = {10.1074/jbc.m117.777391},
pmid = {28546425}
}
@article{lin170804,
title = {Insight into Potential Probiotic Markers Predicted in Lactobacillus pentosus MP-10 Genome Sequence.},
author = {Abriouel H, Perez Montoro B, Casimiro-Soriguer CS, Perez Pulido AJ, Knapp CW, Caballero Gomez N, Castillo-Gutierrez S, Estudillo-Martinez MD, Galvez A, Benomar N.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00891},
pmid = {28588563}
}
@article{lin170701,
title = {Characterization of Bile Salt Hydrolase from Lactobacillus gasseri FR4 and Demonstration of Its Substrate Specificity and Inhibitory Mechanism Using Molecular Docking Analysis.},
author = {Rani RP, Anandharaj M, Ravindran AD.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.01004},
pmid = {28620369}
}
@article{lin384916,
title = {Effect of Soy Isoflavones on Growth of Representative Bacterial Species from the Human Gut.},
author = {Vazquez L, Florez AB, Guadamuro L, Mayo B.},
journal = {Nutrients},
year = {2017},
doi = {10.3390/nu9070727},
pmid = {28698467}
}
@article{lin170716,
title = {Gemini Cationic Amphiphiles Control Biofilm Formation by Bacterial Vaginosis Pathogens.},
author = {Algburi A, Zhang Y, Weeks R, Comito N, Zehm S, Pinto J, Uhrich KE, Chikindas ML.},
journal = {Antimicrob Agents Chemother},
year = {2017},
doi = {10.1128/aac.00650-17},
pmid = {28893789}
}
@article{lin384930,
title = {Designing primers and evaluation of the efficiency of propidium monoazide - Quantitative polymerase chain reaction for counting the viable cells of Lactobacillus gasseri and Lactobacillus salivarius.},
author = {Lai CH, Wu SR, Pang JC, Ramireddy L, Chiang YC, Lin CK, Tsen HY.},
journal = {J Food Drug Anal},
year = {2017},
doi = {10.1016/j.jfda.2016.10.004},
pmid = {28911639}
}
@article{lin170750,
title = {Genetic Tools for the Enhancement of Probiotic Properties.},
author = {Ortiz-Velez L, Britton R.},
journal = {Microbiol Spectr},
year = {2017},
doi = {10.1128/microbiolspec.bad-0018-2016},
pmid = {28936946}
}
@article{lin16426,
title = {Revealing the genomic differences between two subgroups in Lactobacillus gasseri.},
author = {Tada I, Tanizawa Y, Endo A, Tohno M, Arita M},
journal = {Biosci Microbiota Food Health},
year = {2017},
doi = {10.12938/bmfh.17-006},
pmid = {29038772}
}
@article{lin170621,
title = {Aligner optimization increases accuracy and decreases compute times in multi-species sequence data.},
author = {Robinson KM, Hawkins AS, Santana-Cruz I, Adkins RS, Shetty AC, Nagaraj S, Sadzewicz L, Tallon LJ, Rasko DA, Fraser CM, Mahurkar A, Silva JC, Dunning Hotopp JC.},
journal = {Microb Genom},
year = {2017},
doi = {10.1099/mgen.0.000122},
pmid = {29114401}
}
@article{lin170718,
title = {A concurrent subtractive assembly approach for identification of disease associated sub-metagenomes.},
author = {Han W, Wang M, Ye Y.},
journal = {Res Comput Mol Biol},
year = {2017},
doi = {10.1007/978-3-319-56970-3_2},
pmid = {29177251}
}
@article{lin170786,
title = {Role of Lactobacilli and Lactoferrin in the Mucosal Cervicovaginal Defense.},
author = {Valenti P, Rosa L, Capobianco D, Lepanto MS, Schiavi E, Cutone A, Paesano R, Mastromarino P.},
journal = {Front Immunol},
year = {2018},
doi = {10.3389/fimmu.2018.00376},
pmid = {29545798}
}
@article{lin16424,
title = {Lipoteichoic acids are embedded in cell walls during logarithmic phase, but exposed on membrane vesicles in Lactobacillus gasseri JCM 1131(T).},
author = {Shiraishi T, Yokota S, Sato Y, Ito T, Fukiya S, Yamamoto S, Sato T, Yokota A},
journal = {Benef Microbes},
year = {2018},
doi = {10.3920/BM2017.0124},
pmid = {29633638}
}
@article{lin170768,
title = {The lactose operon from Lactobacillus casei is involved in the transport and metabolism of the human milk oligosaccharide core-2 N-acetyllactosamine.},
author = {Bidart GN, Rodriguez-Diaz J, Perez-Martinez G, Yebra MJ.},
journal = {Sci Rep},
year = {2018},
doi = {10.1038/s41598-018-25660-w},
pmid = {29740087}
}
@article{lin170706,
title = {A Comprehensive Genome Survey Provides Novel Insights into Bile Salt Hydrolase (BSH) in Lactobacillaceae.},
author = {Liang L, Yi Y, Lv Y, Qian J, Lei X, Zhang G.},
journal = {Molecules},
year = {2018},
doi = {10.3390/molecules23051157},
pmid = {29751655}
}
@article{lin170709,
title = {Gut Microbiota Confers Resistance of Albino Oxford Rats to the Induction of Experimental Autoimmune Encephalomyelitis.},
author = {Stanisavljevic S, Dinic M, Jevtic B, Dedovic N, Momcilovic M, Dokic J, Golic N, Mostarica Stojkovic M, Miljkovic D.},
journal = {Front Immunol},
year = {2018},
doi = {10.3389/fimmu.2018.00942},
pmid = {29770137}
}
@article{lin170651,
title = {A Cell Surface Aggregation-Promoting Factor from Lactobacillus gasseri Contributes to Inhibition of Trichomonas vaginalis Adhesion to Human Vaginal Ectocervical Cells.},
author = {Phukan N, Brooks AES, Simoes-Barbosa A.},
journal = {Infect Immun},
year = {2018},
doi = {10.1128/iai.00907-17},
pmid = {29784856}
}
@article{lin170665,
title = {The Lactobacillus Bile Salt Hydrolase Repertoire Reveals Niche-Specific Adaptation.},
author = {O'Flaherty S, Briner Crawley A, Theriot CM, Barrangou R.},
journal = {mSphere},
year = {2018},
doi = {10.1128/msphere.00140-18},
pmid = {29848760}
}
@article{lin16423,
title = {The membrane phospholipid cardiolipin plays a pivotal role in bile acid adaptation by Lactobacillus gasseri JCM1131(T).},
author = {Kato S, Tobe H, Matsubara H, Sawada M, Sasaki Y, Fukiya S, Morita N, Yokota A},
journal = {Biochim Biophys Acta Mol Cell Biol Lipids},
year = {2018},
doi = {10.1016/j.bbalip.2018.06.004},
pmid = {29883797}
}
@article{lin170730,
title = {A Small Molecule-Screening Pipeline to Evaluate the Therapeutic Potential of 2-Aminoimidazole Molecules Against Clostridium difficile.},
author = {Thanissery R, Zeng D, Doyle RG, Theriot CM.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01206},
pmid = {29928268}
}
@article{lin170732,
title = {Using glycolysis enzyme sequences to inform Lactobacillus phylogeny.},
author = {Brandt K, Barrangou R.},
journal = {Microb Genom},
year = {2018},
doi = {10.1099/mgen.0.000187},
pmid = {29932393}
}
@article{lin170762,
title = {Comparative Genomic and Phenotypic Analysis of the Vaginal Probiotic Lactobacillus rhamnosus GR-1.},
author = {Petrova MI, Macklaim JM, Wuyts S, Verhoeven T, Vanderleyden J, Gloor GB, Lebeer S, Reid G.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01278},
pmid = {29963028}
}
@article{lin170746,
title = {Conserved Genome Organization and Core Transcriptome of the Lactobacillus acidophilus Complex.},
author = {Crawley AB, Barrangou R.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01834},
pmid = {30150974}
}
@article{lin16422,
title = {Lactobacillus paragasseri sp. nov., a sister taxon of Lactobacillus gasseri, based on whole-genome sequence analyses.},
author = {Tanizawa Y, Tada I, Kobayashi H, Endo A, Maeno S, Toyoda A, Arita M, Nakamura Y, Sakamoto M, Ohkuma M, Tohno M},
journal = {Int J Syst Evol Microbiol},
year = {2018},
doi = {10.1099/ijsem.0.003020},
pmid = {30226464}
}
@article{lin170673,
title = {Selective Inhibition of Neisseria gonorrhoeae by a Dithiazoline in Mixed Infections with Lactobacillus gasseri.},
author = {Lenz JD, Shirk KA, Jolicoeur A, Dillard JP.},
journal = {Antimicrob Agents Chemother},
year = {2018},
doi = {10.1128/aac.00826-18},
pmid = {30275084}
}
@article{lin170741,
title = {Engineering Components of the Lactobacillus S-Layer for Biotherapeutic Applications.},
author = {Klotz C, Barrangou R.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02264},
pmid = {30333802}
}
@article{lin170722,
title = {Evaluation of a Novel Stool Antigen Rapid Test Kit for Detection of Helicobacter pylori Infection.},
author = {Kakiuchi T, Okuda M, Hashiguchi K, Imamura I, Nakayama A, Matsuo M.},
journal = {J Clin Microbiol},
year = {2019},
doi = {10.1128/jcm.01825-18},
pmid = {30567746}
}
@article{lin170747,
title = {Exploiting Prophage-Mediated Lysis for Biotherapeutic Release by Lactobacillus reuteri.},
author = {Alexander LM, Oh JH, Stapleton DS, Schueler KL, Keller MP, Attie AD, van Pijkeren JP.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.02335-18},
pmid = {30683744}
}
@article{lin170699,
title = {Axiom Microbiome Array, the next generation microarray for high-throughput pathogen and microbiome analysis.},
author = {Thissen JB, Be NA, McLoughlin K, Gardner S, Rack PG, Shapero MH, Rowland RRR, Slezak T, Jaing CJ.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0212045},
pmid = {30735540}
}
@article{lin16421,
title = {Lactobacillus gasseri APC 678 Reduces Shedding of the Pathogen Clostridium difficile in a Murine Model.},
author = {Quigley L, Coakley M, Alemayehu D, Rea MC, Casey PG, O'Sullivan O, Murphy E, Kiely B, Cotter PD, Hill C, Ross RP},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.00273},
pmid = {30842760}
}
@article{lin170745,
title = {Core Fucosylation of Maternal Milk N-Glycan Evokes B Cell Activation by Selectively Promoting the l-Fucose Metabolism of Gut Bifidobacterium spp. and Lactobacillus spp.},
author = {Li M, Bai Y, Zhou J, Huang W, Yan J, Tao J, Fan Q, Liu Y, Mei D, Yan Q, Yuan J, Malard P, Wang Z, Gu J, Tanigchi N, Li W.},
journal = {mBio},
year = {2019},
doi = {10.1128/mbio.00128-19},
pmid = {30940702}
}
@article{lin170838,
title = {ANCHOR: a 16S rRNA gene amplicon pipeline for microbial analysis of multiple environmental samples.},
author = {Gonzalez E, Pitre FE, Brereton NJB.},
journal = {Environ Microbiol},
year = {2019},
doi = {10.1111/1462-2920.14632},
pmid = {30990927}
}
@article{lin170870,
title = {Efficient Phytase Secretion and Phytate Degradation by Recombinant Bifidobacterium longum JCM 1217.},
author = {Sun Z, Yue Z, Yang X, Hao X, Song M, Li L, Chen C, Chu C, Li C.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.00796},
pmid = {31040837}
}
@article{lin170865,
title = {Characterization of genomic DNA of lactic acid bacteria for activation of plasmacytoid dendritic cells.},
author = {Horie A, Tomita Y, Ohshio K, Fujiwara D, Fujii T.},
journal = {BMC Microbiol},
year = {2019},
doi = {10.1186/s12866-019-1458-y},
pmid = {31060586}
}
@article{lin170696,
title = {Viability and Composition Validation of Commercial Probiotic Products by Selective Culturing Combined with Next-Generation Sequencing.},
author = {Ullah M, Raza A, Ye L, Yu Z.},
journal = {Microorganisms},
year = {2019},
doi = {10.3390/microorganisms7070188},
pmid = {31261869}
}
@article{lin170795,
title = {P40 and P75 Are Singular Functional Muramidases Present in the Lactobacillus casei /paracasei/rhamnosus Taxon.},
author = {Bauerl C, Abitayeva G, Sosa-Carrillo S, Mencher-Beltran A, Navarro-Lleo N, Coll-Marques JM, Zuniga-Cabrera M, Shaikhin S, Perez-Martinez G.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.01420},
pmid = {31297099}
}
@article{lin170670,
title = {Offline Next Generation Metagenomics Sequence Analysis Using MinION Detection Software (MINDS).},
author = {Deshpande SV, Reed TM, Sullivan RF, Kerkhof LJ, Beigel KM, Wade MM.},
journal = {Genes (Basel)},
year = {2019},
doi = {10.3390/genes10080578},
pmid = {31366182}
}
@article{lin170666,
title = {Putative Adhesion Factors in Vaginal Lactobacillus gasseri DSM 14869: Functional Characterization.},
author = {Zeng Z, Zuo F, Marcotte H.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.00800-19},
pmid = {31420338}
}
@article{lin170740,
title = {Effects of Electrospinning on the Viability of Ten Species of Lactic Acid Bacteria in Poly(Ethylene Oxide) Nanofibers.},
author = {Zupancic S, Skrlec K, Kocbek P, Kristl J, Berlec A.},
journal = {Pharmaceutics},
year = {2019},
doi = {10.3390/pharmaceutics11090483},
pmid = {31540399}
}
@article{lin170759,
title = {The Potential Impact of Probiotics on the Gut Microbiome of Athletes.},
author = {Wosinska L, Cotter PD, O'Sullivan O, Guinane C.},
journal = {Nutrients},
year = {2019},
doi = {10.3390/nu11102270},
pmid = {31546638}
}
@article{lin170698,
title = {Cationic amphiphiles against Gardnerella vaginalis resistant strains and bacterial vaginosis-associated pathogens.},
author = {Weeks RM, Moretti A, Song S, Uhrich KE, Karlyshev AV, Chikindas ML.},
journal = {Pathog Dis},
year = {2019},
doi = {10.1093/femspd/ftz059},
pmid = {31603505}
}
@article{lin170686,
title = {Development of a Mucoadhesive in Situ Gelling Formulation for the Delivery of Lactobacillus gasseri into Vaginal Cavity.},
author = {Vigani B, Faccendini A, Rossi S, Sandri G, Bonferoni MC, Grisoli P, Ferrari F.},
journal = {Pharmaceutics},
year = {2019},
doi = {10.3390/pharmaceutics11100511},
pmid = {31623341}
}
@article{lin170754,
title = {Unravelling the diversity of glycoside hydrolase family 13 alpha-amylases from Lactobacillus plantarum WCFS1.},
author = {Plaza-Vinuesa L, Hernandez-Hernandez O, Moreno FJ, de Las Rivas B, Munoz R.},
journal = {Microb Cell Fact},
year = {2019},
doi = {10.1186/s12934-019-1237-3},
pmid = {31655584}
}
@article{lin170726,
title = {A Robust Metatranscriptomic Technology for Population-Scale Studies of Diet, Gut Microbiome, and Human Health.},
author = {Hatch A, Horne J, Toma R, Twibell BL, Somerville KM, Pelle B, Canfield KP, Genkin M, Banavar G, Perlina A, Messier H, Klitgord N, Vuyisich M.},
journal = {Int J Genomics},
year = {2019},
doi = {10.1155/2019/1718741},
pmid = {31662956}
}
@article{lin170703,
title = {Unique Microbial Catabolic Pathway for the Human Core N-Glycan Constituent Fucosyl-alpha-1,6-N-Acetylglucosamine-Asparagine.},
author = {Becerra JE, Rodriguez-Diaz J, Gozalbo-Rovira R, Palomino-Schatzlein M, Zuniga M, Monedero V, Yebra MJ.},
journal = {mBio},
year = {2020},
doi = {10.1128/mbio.02804-19},
pmid = {31937642}
}
@article{lin170791,
title = {The Application of Pollen as a Functional Food and Feed Ingredient-The Present and Perspectives.},
author = {Kostic AZ, Milincic DD, Barac MB, Ali Shariati M, Tesic ZL, Pesic MB.},
journal = {Biomolecules},
year = {2020},
doi = {10.3390/biom10010084},
pmid = {31948037}
}
@article{lin170622,
title = {Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease.},
author = {Fornelos N, Franzosa EA, Bishai J, Annand JW, Oka A, Lloyd-Price J, Arthur TD, Garner A, Avila-Pacheco J, Haiser HJ, Tolonen AC, Porter JA, Clish CB, Sartor RB, Huttenhower C, Vlamakis H, Xavier RJ.},
journal = {Nat Microbiol},
year = {2020},
doi = {10.1038/s41564-019-0655-7},
pmid = {31959971}
}
@article{lin170618,
title = {Competitive Exclusion Is a Major Bioprotective Mechanism of Lactobacilli against Fungal Spoilage in Fermented Milk Products.},
author = {Siedler S, Rau MH, Bidstrup S, Vento JM, Aunsbjerg SD, Bosma EF, McNair LM, Beisel CL, Neves AR.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.02312-19},
pmid = {32005739}
}
@article{lin170685,
title = {Comparative analysis of Lactobacillus gasseri from Chinese subjects reveals a new species-level taxa.},
author = {Zhou X, Yang B, Stanton C, Ross RP, Zhao J, Zhang H, Chen W.},
journal = {BMC Genomics},
year = {2020},
doi = {10.1186/s12864-020-6527-y},
pmid = {32013858}
}
@article{lin384933,
title = {Comparative Analysis of Lactobacillus gasseri and Lactobacillus crispatus Isolated From Human Urogenital and Gastrointestinal Tracts.},
author = {Pan M, Hidalgo-Cantabrana C, Goh YJ, Sanozky-Dawes R, Barrangou R.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.03146},
pmid = {32038579}
}
@article{lin170803,
title = {Do you cov me? Effect of coverage reduction on metagenome shotgun sequencing studies.},
author = {Cattonaro F, Spadotto A, Radovic S, Marroni F.},
journal = {F1000Res},
year = {2018},
doi = {10.12688/f1000research.16804.4},
pmid = {32185014}
}
@article{lin170653,
title = {Genome-based species-specific primers for rapid identification of six species of Lactobacillus acidophilus group using multiplex PCR.},
author = {You I, Kim EB.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0230550},
pmid = {32196527}
}
@article{lin170687,
title = {Introducing a bioelectrochemical method for highly selective enumeration of magnetotactic bacteria.},
author = {Memarpoor-Yazdi M, Haghighatian S, Doroodmand MM, Derakhshandeh A, Moezzi MS.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-65499-8},
pmid = {32444683}
}
@article{lin170868,
title = {Crystal structure of beta-L-arabinobiosidase belonging to glycoside hydrolase family 121.},
author = {Saito K, Viborg AH, Sakamoto S, Arakawa T, Yamada C, Fujita K, Fushinobu S.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0231513},
pmid = {32479540}
}
@article{lin170735,
title = {Oral Supplements of Combined Bacillus licheniformis Zhengchangsheng® and Xylooligosaccharides Improve High-Fat Diet-Induced Obesity and Modulate the Gut Microbiota in Rats.},
author = {Li Y, Liu M, Liu H, Wei X, Su X, Li M, Yuan J.},
journal = {Biomed Res Int},
year = {2020},
doi = {10.1155/2020/9067821},
pmid = {32509874}
}
@article{lin170729,
title = {Simulating transmission of ESKAPE pathogens plus C. difficile in relevant clinical scenarios.},
author = {Weber KL, LeSassier DS, Kappell AD, Schulte KQ, Westfall N, Albright NC, Godbold GD, Palsikar V, Acevedo CA, Ternus KL, Hewitt FC.},
journal = {BMC Infect Dis},
year = {2020},
doi = {10.1186/s12879-020-05121-4},
pmid = {32532220}
}
@article{lin170614,
title = {Oral Microbiota Display Profound Differential Metabolic Kinetics and Community Shifts upon Incubation with Sucrose, Trehalose, Kojibiose, and Xylitol.},
author = {Onyango SO, De Clercq N, Beerens K, Van Camp J, Desmet T, Van de Wiele T.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.01170-20},
pmid = {32561577}
}
@article{lin170691,
title = {Developing standards for the microbiome field.},
author = {Amos GCA, Logan A, Anwar S, Fritzsche M, Mate R, Bleazard T, Rijpkema S.},
journal = {Microbiome},
year = {2020},
doi = {10.1186/s40168-020-00856-3},
pmid = {32591016}
}
@article{lin170779,
title = {Large-scale metabolic interaction network of the mouse and human gut microbiota.},
author = {Lim R, Cabatbat JJT, Martin TLP, Kim H, Kim S, Sung J, Ghim CM, Kim PJ.},
journal = {Sci Data},
year = {2020},
doi = {10.1038/s41597-020-0516-5},
pmid = {32591517}
}
@article{lin170869,
title = {Low cell surface hydrophobicity is one of the key factors for high butanol tolerance of Lactic acid bacteria.},
author = {Petrova P, Tsvetanova F, Petrov K.},
journal = {Eng Life Sci},
year = {2019},
doi = {10.1002/elsc.201800141},
pmid = {32624995}
}
@article{lin16419,
title = {Metabolically engineered Lactobacillus gasseri JCM 1131 as a novel producer of optically pure L- and D-lactate.},
author = {Zunar B, Trontel A, Svetec Miklenic M, Prah JL, Stafa A, Mardetko N, Novak M, Santek B, Svetec IK},
journal = {World J Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s11274-020-02887-2},
pmid = {32656603}
}
@article{lin170615,
title = {The impact of Lactobacillus on group B streptococcal interactions with cells of the extraplacental membranes.},
author = {Shiroda M, Aronoff DM, Gaddy JA, Manning SD.},
journal = {Microb Pathog},
year = {2020},
doi = {10.1016/j.micpath.2020.104463},
pmid = {32828901}
}
@article{lin384925,
title = {Development of Real-Time PCR Assay to Specifically Detect 22 Bifidobacterium Species and Subspecies Using Comparative Genomics.},
author = {Kim HB, Kim E, Yang SM, Lee S, Kim MJ, Kim HY.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.02087},
pmid = {33013760}
}
@article{lin170777,
title = {Akkermansia muciniphila promotes type H vessel formation and bone fracture healing by reducing gut permeability and inflammation.},
author = {Liu JH, Yue T, Luo ZW, Cao J, Yan ZQ, Jin L, Wan TF, Shuai CJ, Wang ZG, Zhou Y, Xu R, Xie H.},
journal = {Dis Model Mech},
year = {2020},
doi = {10.1242/dmm.043620},
pmid = {33033107}
}
@article{lin384927,
title = {Identification of sulfur components enhancing the anti-Candida effect of Lactobacillus rhamnosus Lcr35.},
author = {Dausset C, Bornes S, Miquel S, Kondjoyan N, Angenieux M, Nakusi L, Veisseire P, Alaterre E, Bermudez-Humaran LG, Langella P, Engel E, Forestier C, Nivoliez A.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-74027-7},
pmid = {33051479}
}
@article{lin170725,
title = {Integrated Phenotypic-Genotypic Analysis of Candidate Probiotic Weissella Cibaria Strains Isolated from Dairy Cows in Kuwait.},
author = {Patrone V, Al-Surrayai T, Romaniello F, Fontana A, Milani G, Sagheddu V, Puglisi E, Callegari ML, Al-Mansour H, Kishk MW, Morelli L.},
journal = {Probiotics Antimicrob Proteins},
year = {2021},
doi = {10.1007/s12602-020-09715-x},
pmid = {33085038}
}
@article{lin384923,
title = {Identification and Monitoring of Lactobacillus delbrueckii Subspecies Using Pangenomic-Based Novel Genetic Markers.},
author = {Kim E, Cho EJ, Yang SM, Kim HY.},
journal = {J Microbiol Biotechnol},
year = {2021},
doi = {10.4014/jmb.2009.09034},
pmid = {33144553}
}
@article{lin16418,
title = {Effects of a Potential Probiotic Strain Lactobacillus gasseri ATCC 33323 on Helicobacter pylori-Induced Inflammatory Response and Gene Expression in Coinfected Gastric Epithelial Cells.},
author = {Yarmohammadi M, Yadegar A, Ebrahimi MT, Zali MR},
journal = {Probiotics Antimicrob Proteins},
year = {2020},
doi = {10.1007/s12602-020-09721-z},
pmid = {33206342}
}
@article{lin170607,
title = {Fermentation by Probiotic Lactobacillus gasseri Strains Enhances the Carotenoid and Fibre Contents of Carrot Juice.},
author = {Xu Y, Hlaing MM, Glagovskaia O, Augustin MA, Terefe NS.},
journal = {Foods},
year = {2020},
doi = {10.3390/foods9121803},
pmid = {33291830}
}
@article{lin16416,
title = {Portable CRISPR-Cas9(N) System for Flexible Genome Engineering in Lactobacillus acidophilus, Lactobacillus gasseri, and Lactobacillus paracasei.},
author = {Goh YJ, Barrangou R},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/AEM.02669-20},
pmid = {33397707}
}
@article{lin170782,
title = {Transkingdom interactions between Lactobacilli and hepatic mitochondria attenuate western diet-induced diabetes.},
author = {Rodrigues RR, Gurung M, Li Z, Garcia-Jaramillo M, Greer R, Gaulke C, Bauchinger F, You H, Pederson JW, Vasquez-Perez S, White KD, Frink B, Philmus B, Jump DB, Trinchieri G, Berry D, Sharpton TJ, Dzutsev A, Morgun A, Shulzhenko N.},
journal = {Nat Commun},
year = {2021},
doi = {10.1038/s41467-020-20313-x},
pmid = {33397942}
}
@article{lin170859,
title = {Adhesion mechanisms of Bifidobacterium animalis subsp. lactis JCM 10602 to dietary fiber.},
author = {Taniguchi M, Nambu M, Katakura Y, Yamasaki-Yashiki S.},
journal = {Biosci Microbiota Food Health},
year = {2021},
doi = {10.12938/bmfh.2020-003},
pmid = {33520570}
}
@article{lin170669,
title = {Lactobacillus bile salt hydrolase substrate specificity governs bacterial fitness and host colonization.},
author = {Foley MH, O'Flaherty S, Allen G, Rivera AJ, Stewart AK, Barrangou R, Theriot CM.},
journal = {Proc Natl Acad Sci U S A},
year = {2021},
doi = {10.1073/pnas.2017709118},
pmid = {33526676}
}
@article{lin170689,
title = {Biological Control and Mitigation of Aflatoxin Contamination in Commodities.},
author = {Peles F, Sipos P, Kovacs S, Gyori Z, Pocsi I, Pusztahelyi T.},
journal = {Toxins (Basel)},
year = {2021},
doi = {10.3390/toxins13020104},
pmid = {33535580}
}
@article{lin170708,
title = {Information Theoretic Metagenome Assembly Allows the Discovery of Disease Biomarkers in Human Microbiome.},
author = {Nalbantoglu OU.},
journal = {Entropy (Basel)},
year = {2021},
doi = {10.3390/e23020187},
pmid = {33540903}
}
@article{lin170772,
title = {A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community.},
author = {Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA.},
journal = {mSystems},
year = {2021},
doi = {10.1128/msystems.01222-20},
pmid = {33563782}
}
@article{lin170742,
title = {Akkermansia muciniphila Improves Host Defense Against Influenza Virus Infection.},
author = {Hu X, Zhao Y, Yang Y, Gong W, Sun X, Yang L, Zhang Q, Jin M.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.586476},
pmid = {33603716}
}
@article{lin170667,
title = {Reduced metagenome sequencing for strain-resolution taxonomic profiles.},
author = {Snipen L, Angell IL, Rognes T, Rudi K.},
journal = {Microbiome},
year = {2021},
doi = {10.1186/s40168-021-01019-8},
pmid = {33781324}
}
@article{lin170654,
title = {Draft genome sequence of Lactobacillus delbrueckii subsp. bulgaricus LBP UFSC 2230: a tool for preliminary identification of enzymes involved in CLA metabolism.},
author = {Kuhl GC, Mazzon RR, Duarte RTD, De Dea Lindner J.},
journal = {Braz J Microbiol},
year = {2021},
doi = {10.1007/s42770-021-00479-2},
pmid = {33891284}
}
@article{lin170775,
title = {Acceptive Immunity: The Role of Fucosylated Glycans in Human Host-Microbiome Interactions.},
author = {Kononova S, Litvinova E, Vakhitov T, Skalinskaya M, Sitkin S.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22083854},
pmid = {33917768}
}
@article{lin429921,
title = {Four Types of TiO2 Reduced the Growth of Selected Lactic Acid Bacteria Strains.},
author = {Baranowska-Wojcik E, Gustaw K, Szwajgier D, Oleszczuk P, Pawlikowska-Pawlega B, Pawelec J, Kapral-Piotrowska J.},
journal = {Foods},
year = {2021},
doi = {10.3390/foods10050939},
pmid = {33923019}
}
@article{lin170683,
title = {Analytical Performance Characteristics of a New Transcription-Mediated Amplification Assay for Treponema pallidum.},
author = {Getman D, Lin M, Barakat N, Skvoretz R, Godornes C, Swenson P, Nenninger A, Golden MR, Lukehart SA.},
journal = {J Clin Microbiol},
year = {2021},
doi = {10.1128/jcm.00511-21},
pmid = {33980645}
}
@article{lin170676,
title = {Influence of Human Milk on Very Preterms' Gut Microbiota and Alkaline Phosphatase Activity.},
author = {Morais J, Marques C, Faria A, Teixeira D, Barreiros-Mota I, Durao C, Araujo J, Ismael S, Brito S, Cardoso M, Macedo I, Pereira E, Tome T, Calhau C.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13051564},
pmid = {34066473}
}
@article{lin16414,
title = {Identification of Bile Salt Hydrolase and Bile Salt Resistance in a Probiotic Bacterium Lactobacillus gasseri JCM1131(T).},
author = {Kusada H, Morinaga K, Tamaki H},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9051011},
pmid = {34066735}
}
@article{lin170613,
title = {Quantitative Detection of Bifidobacterium longum Strains in Feces Using Strain-Specific Primers.},
author = {Xiao Y, Wang C, Zhao J, Zhang H, Chen W, Zhai Q.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9061159},
pmid = {34071208}
}
@article{lin170761,
title = {In Vitro Framework to Assess the Anti-Helicobacter pylori Potential of Lactic Acid Bacteria Secretions as Alternatives to Antibiotics.},
author = {Whiteside SA, Mohiuddin MM, Shlimon S, Chahal J, MacPherson CW, Jass J, Tompkins TA, Creuzenet C.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22115650},
pmid = {34073352}
}
@article{lin170690,
title = {Impact of Phlorotannin Extracts from Fucus vesiculosus on Human Gut Microbiota.},
author = {Catarino MD, Marcal C, Bonifacio-Lopes T, Campos D, Mateus N, Silva AMS, Pintado MM, Cardoso SM.},
journal = {Mar Drugs},
year = {2021},
doi = {10.3390/md19070375},
pmid = {34209623}
}
@article{lin170697,
title = {Challenges in the production and use of probiotics as therapeuticals in cancer treatment or prevention.},
author = {Mejia-Caballero A, Salas-Villagran VA, Jimenez-Serna A, Farres A.},
journal = {J Ind Microbiol Biotechnol},
year = {2021},
doi = {10.1093/jimb/kuab052},
pmid = {34427674}
}
@article{lin16413,
title = {Oligosaccharide Metabolism and Lipoteichoic Acid Production in Lactobacillus gasseri and Lactobacillus paragasseri.},
author = {Shiraishi T, Maeno S, Kishi S, Fujii T, Tanno H, Hirano K, Tochio T, Tanizawa Y, Arita M, Yokota SI, Endo A},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9081590},
pmid = {34442669}
}
@article{lin170693,
title = {Competitive growth kinetics of Campylobacter jejuni, Escherichia coli O157:H7 and Listeria monocytogenes with enteric microflora in a small-intestine model.},
author = {Fuchisawa Y, Abe H, Koyama K, Koseki S.},
journal = {J Appl Microbiol},
year = {2022},
doi = {10.1111/jam.15294},
pmid = {34498377}
}
@article{lin170799,
title = {Identification of Biomarkers for Systemic Distribution of Nanovesicles From Lactobacillus johnsonii N6.2.},
author = {Harrison NA, Gardner CL, da Silva DR, Gonzalez CF, Lorca GL.},
journal = {Front Immunol},
year = {2021},
doi = {10.3389/fimmu.2021.723433},
pmid = {34531870}
}
@article{lin384924,
title = {Differentiation of Lacticaseibacillus zeae Using Pan-Genome Analysis and Real-Time PCR Method Targeting a Unique Gene.},
author = {Kim E, Yang SM, Kim HY.},
journal = {Foods},
year = {2021},
doi = {10.3390/foods10092112},
pmid = {34574222}
}
@article{lin170872,
title = {Identification of difructose dianhydride I synthase/hydrolase from an oral bacterium establishes a novel glycoside hydrolase family.},
author = {Kashima T, Okumura K, Ishiwata A, Kaieda M, Terada T, Arakawa T, Yamada C, Shimizu K, Tanaka K, Kitaoka M, Ito Y, Fujita K, Fushinobu S.},
journal = {J Biol Chem},
year = {2021},
doi = {10.1016/j.jbc.2021.101324},
pmid = {34688653}
}
@article{lin170677,
title = {A Novel Developed Bioactive Composite Resin Containing Silver/Zinc Oxide (Ag/ZnO) Nanoparticles as an Antimicrobial Material against Streptococcus mutans, Lactobacillus, and Candida albicans.},
author = {Kachoei M, Divband B, Rahbar M, Esmaeilzadeh M, Ghanizadeh M, Alam M.},
journal = {Evid Based Complement Alternat Med},
year = {2021},
doi = {10.1155/2021/4743411},
pmid = {34697547}
}
@article{lin16412,
title = {Comparison of 16S rRNA Gene Based Microbial Profiling Using Five Next-Generation Sequencers and Various Primers.},
author = {Park C, Kim SB, Choi SH, Kim S},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.715500},
pmid = {34721319}
}
@article{lin170681,
title = {High-quality whole-genome sequence analysis of Lactobacillus paragasseri UBLG-36 reveals oxalate-degrading potential of the strain.},
author = {Mehra Y, Viswanathan P.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0260116},
pmid = {34797858}
}
@article{lin170684,
title = {Impact of vaginal douching products on vaginal Lactobacillus, Escherichia coli and epithelial immune responses.},
author = {Hesham H, Mitchell AJ, Bergerat A, Hung K, Mitchell CM.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-02426-5},
pmid = {34845288}
}
@article{lin384928,
title = {Molecular Identification and Selection of Probiotic Strains Able to Reduce the Serum TMAO Level in Mice Challenged with Choline.},
author = {Ramireddy L, Tsen HY, Chiang YC, Hung CY, Wu SR, Young SL, Lin JS, Huang CH, Chiu SH, Chen CC, Chen CC.},
journal = {Foods},
year = {2021},
doi = {10.3390/foods10122931},
pmid = {34945482}
}
@article{lin16411,
title = {Engineering of Vaginal Lactobacilli to Express Fluorescent Proteins Enables the Analysis of Their Mixture in Nanofibers.},
author = {Stojanov S, Plavec TV, Kristl J, Zupancic S, Berlec A},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms222413631},
pmid = {34948426}
}
@article{lin170645,
title = {[Isolation, identification and safety evaluation of Lactobacillus gasseri strain LGV03 isolated from the vagina of healthy women].},
author = {Su B, Cao L, Zheng J, Zhang L, Zhang Z, Qiu F.},
journal = {Nan Fang Yi Ke Da Xue Xue Bao},
year = {2021},
doi = {10.12122/j.issn.1673-4254.2021.12.08},
pmid = {35012912}
}
@article{lin170733,
title = {Human Microbiome and Its Medical Applications.},
author = {Zhang Y, Zhou L, Xia J, Dong C, Luo X.},
journal = {Front Mol Biosci},
year = {2021},
doi = {10.3389/fmolb.2021.703585},
pmid = {35096962}
}
@article{lin170682,
title = {In Silico Characterisation of Putative Prophages in Lactobacillaceae Used in Probiotics for Vaginal Health.},
author = {Happel AU, Kullin BR, Gamieldien H, Jaspan HB, Varsani A, Martin D, Passmore JS, Froissart R.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10020214},
pmid = {35208669}
}
@article{lin170650,
title = {Genome Sequence and Assessment of Safety and Potential Probiotic Traits of Lactobacillus johnsonii CNCM I-4884.},
author = {Boucard AS, Florent I, Polack B, Langella P, Bermudez-Humaran LG.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10020273},
pmid = {35208728}
}
@article{lin170734,
title = {Transkingdom Analysis of the Female Reproductive Tract Reveals Bacteriophages form Communities.},
author = {Madere FS, Sohn M, Winbush AK, Barr B, Grier A, Palumbo C, Java J, Meiring T, Williamson AL, Bekker LG, Adler DH, Monaco CL.},
journal = {Viruses},
year = {2022},
doi = {10.3390/v14020430},
pmid = {35216023}
}
@article{lin170858,
title = {Evaluation of Modulatory Activities of Lactobacillus crispatus Strains in the Context of the Vaginal Microbiota.},
author = {Argentini C, Fontana F, Alessandri G, Lugli GA, Mancabelli L, Ossiprandi MC, van Sinderen D, Ventura M, Milani C, Turroni F.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02733-21},
pmid = {35266820}
}
@article{lin170609,
title = {Anti-Microbial Activity of Phytocannabinoids and Endocannabinoids in the Light of Their Physiological and Pathophysiological Roles.},
author = {Sionov RV, Steinberg D.},
journal = {Biomedicines},
year = {2022},
doi = {10.3390/biomedicines10030631},
pmid = {35327432}
}
@article{lin170611,
title = {Sweet Immunity Aspects during Levan Oligosaccharide-Mediated Priming in Rocket against Botrytis cinerea.},
author = {Versluys M, Van den Ende W.},
journal = {Biomolecules},
year = {2022},
doi = {10.3390/biom12030370},
pmid = {35327562}
}
@article{lin170711,
title = {Microbiome therapeutics: exploring the present scenario and challenges.},
author = {Yadav M, Chauhan NS.},
journal = {Gastroenterol Rep (Oxf)},
year = {2022},
doi = {10.1093/gastro/goab046},
pmid = {35382166}
}
@article{lin170744,
title = {Evaluation of Microbial-Fructo-Oligosaccharides Metabolism by Human Gut Microbiota Fermentation as Compared to Commercial Inulin-Derived Oligosaccharides.},
author = {Roupar D, Coelho MC, Goncalves DA, Silva SP, Coelho E, Silva S, Coimbra MA, Pintado M, Teixeira JA, Nobre C.},
journal = {Foods},
year = {2022},
doi = {10.3390/foods11070954},
pmid = {35407041}
}
@article{lin384935,
title = {Probiotics, Their Extracellular Vesicles and Infectious Diseases.},
author = {Dominguez Rubio AP, D'Antoni CL, Piuri M, Perez OE.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.864720},
pmid = {35432276}
}
@article{lin170620,
title = {The Evaluation of the Effects of Two Probiotic Strains on the Oral Ecosystem: A Randomized Clinical Trial.},
author = {Volgenant CMC, van der Waal SV, Brandt BW, Buijs MJ, van der Veen MH, Rosema NAM, Fiebich BL, Rose T, Schmitter T, Gajfulin M, Crielaard W, Zaura E.},
journal = {Front Oral Health},
year = {2022},
doi = {10.3389/froh.2022.825017},
pmid = {35434705}
}
@article{lin170661,
title = {A Cationic Amphipathic Tilapia Piscidin 4 Peptide-Based Antimicrobial Formulation Promotes Eradication of Bacterial Vaginosis-Associated Bacterial Biofilms.},
author = {Lin WC, Chen YR, Chuang CM, Chen JY.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.806654},
pmid = {35444633}
}
@article{lin170717,
title = {The Chitosan-Based System with Scutellariae baicalensis radix Extract for the Local Treatment of Vaginal Infections.},
author = {Chanaj-Kaczmarek J, Rosiak N, Szymanowska D, Rajewski M, Wender-Ozegowska E, Cielecka-Piontek J.},
journal = {Pharmaceutics},
year = {2022},
doi = {10.3390/pharmaceutics14040740},
pmid = {35456574}
}
@article{lin170712,
title = {Effect of Probiotic-Assisted Eradication of cagA+/vacA s1m1 Helicobacter pylori on Intestinal Flora.},
author = {He C, Kong F, Chai X, Zou C, Zhu X, Zhao D.},
journal = {Biomed Res Int},
year = {2022},
doi = {10.1155/2022/8607671},
pmid = {35528160}
}
@article{lin170635,
title = {Draft Genome Sequence of a Lactobacillus gasseri Strain Isolated from the Catheterized Urine of a Healthy Postmenopausal Woman.},
author = {Johnson JA, Modliszewski JL, Siddiqui NY, Sysoeva TA.},
journal = {Microbiol Resour Announc},
year = {2022},
doi = {10.1128/mra.00021-22},
pmid = {35532533}
}
@article{lin384921,
title = {Comparison of Real-Time PCR and Droplet Digital PCR for the Quantitative Detection of Lactiplantibacillus plantarum subsp. plantarum},
author = {Choi CH, Kim E, Yang SM, Kim DS, Suh SM, Lee GY, Kim HY.},
journal = {Foods},
year = {2022},
doi = {10.3390/foods11091331},
pmid = {35564054}
}
@article{lin170646,
title = {Characterizing the mucin-degrading capacity of the human gut microbiota.},
author = {Glover JS, Ticer TD, Engevik MA.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-11819-z},
pmid = {35589783}
}
@article{lin170715,
title = {Screening and Characterization of Some Lactobacillaceae for Detection of Cholesterol-Lowering Activities.},
author = {Frappier M, Auclair J, Bouasker S, Gunaratnam S, Diarra C, Millette M.},
journal = {Probiotics Antimicrob Proteins},
year = {2022},
doi = {10.1007/s12602-022-09959-9},
pmid = {35704269}
}
@article{lin170671,
title = {Influence of Excipient Composition on Survival of Vaginal Lactobacilli in Electrospun Nanofibers.},
author = {Stojanov S, Kristl J, Zupancic S, Berlec A.},
journal = {Pharmaceutics},
year = {2022},
doi = {10.3390/pharmaceutics14061155},
pmid = {35745728}
}
@article{lin384934,
title = {Comparison of probiotic Lactobacillus strains isolated from dairy and Iranian traditional food products with those from human source on intestinal microbiota using BALB/C mice model.},
author = {Hatami S, Yavarmanesh M, Sankian M, Issazadeh SA.},
journal = {Braz J Microbiol},
year = {2022},
doi = {10.1007/s42770-022-00790-6},
pmid = {35781865}
}
@article{lin57295,
title = {Goji Ferment Ameliorated Acetaminophen-Induced Liver Injury in vitro and in vivo.},
author = {Yang CM, Chien MY, Wang LY, Chuang CH, Chen CH},
journal = {Probiotics Antimicrob Proteins},
year = {2022},
doi = {10.1007/s12602-022-09956-y},
pmid = {35796949}
}
@article{lin57294,
title = {Lactobacilli displacement and Candida albicans inhibition on initial adhesion assays: a probiotic analysis.},
author = {Rodriguez-Arias RJ, Guachi-Alvarez BO, Montalvo-Vivero DE, Machado A},
journal = {BMC Res Notes},
year = {2022},
doi = {10.1186/s13104-022-06114-z},
pmid = {35799214}
}
@article{lin170857,
title = {Lactobacillus paragasseri OLL2809 Improves Depression-Like Behavior and Increases Beneficial Gut Microbes in Mice.},
author = {Hashikawa-Hobara N, Otsuka A, Okujima C, Hashikawa N.},
journal = {Front Neurosci},
year = {2022},
doi = {10.3389/fnins.2022.918953},
pmid = {35837127}
}
@article{lin170710,
title = {Discovery of Novel Iminosugar Compounds Produced by Lactobacillus paragasseri MJM60645 and Their Anti-Biofilm Activity against Streptococcus mutans.},
author = {Gu M, Cheng J, Lee YG, Cho JH, Suh JW.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.01122-22},
pmid = {35863019}
}
@article{lin384915,
title = {Acne, Microbiome, and Probiotics: The Gut-Skin Axis.},
author = {Sanchez-Pellicer P, Navarro-Moratalla L, Nunez-Delegido E, Ruzafa-Costas B, Aguera-Santos J, Navarro-Lopez V.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10071303},
pmid = {35889022}
}
@article{lin170641,
title = {Colon specific delivery of miR-155 inhibitor alleviates estrogen deficiency related phenotype via microbiota remodeling.},
author = {Zhao L, Zhou T, Chen J, Cai W, Shi R, Duan Y, Yuan L, Xing C.},
journal = {Drug Deliv},
year = {2022},
doi = {10.1080/10717544.2022.2108163},
pmid = {35938574}
}
@article{lin170864,
title = {Promotion of Nitrogen Fixation of Diverse Heterotrophs by Solid-Phase Humin.},
author = {Dey S, Kasai T, Katayama A.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.853411},
pmid = {35992702}
}
@article{lin384926,
title = {Lacticaseibacillus rhamnosus Lcr35 Stimulates Epithelial Vaginal Defenses upon Gardnerella vaginalis Infection.},
author = {Miquel S, Verlaguet J, Garcin S, Bertran T, Evrard B, Forestier C, Vareille-Delarbre M.},
journal = {Infect Immun},
year = {2022},
doi = {10.1128/iai.00309-22},
pmid = {36000874}
}
@article{lin170652,
title = {Development and Evaluation of a Thermosensitive In Situ Gel Formulation for Intravaginal Delivery of Lactobacillus gasseri.},
author = {Zhao Y, Wang T, Chen Z, Ren H, Song P, Zhu Y, Liang S, Tzeng C.},
journal = {Pharmaceutics},
year = {2022},
doi = {10.3390/pharmaceutics14091934},
pmid = {36145685}
}
@article{lin429920,
title = {SERS-PLSR Analysis of Vaginal Microflora: Towards the Spectral Library of Microorganisms.},
author = {Berus SM, Adamczyk-Poplawska M, Gozdzik K, Przedpelska G, Szymborski TR, Stepanenko Y, Kaminska A.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms232012576},
pmid = {36293436}
}
@article{lin57292,
title = {Anti-Helicobacter pylori activity of potential probiotic Lactiplantibacillus pentosus SLC13.},
author = {Thuy TTD, Kuo PY, Lin SM, Kao CY},
journal = {BMC Microbiol},
year = {2022},
doi = {10.1186/s12866-022-02701-z},
pmid = {36411410}
}
@article{lin384920,
title = {Apoptosis-Inducing Effects of Short-Chain Fatty Acids-Rich Fermented Pistachio Milk in Human Colon Carcinoma Cells.},
author = {Lim SJ, Kwon HC, Shin DM, Choi YJ, Han SG, Kim YJ, Han SG.},
journal = {Foods},
year = {2023},
doi = {10.3390/foods12010189},
pmid = {36613403}
}
@article{lin170714,
title = {Exploration of the Main Antibiofilm Substance of Lactobacillus plantarum ATCC 14917 and Its Effect against Streptococcus mutans.},
author = {Liang J, Zhou Y, Tang G, Wu R, Lin H.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24031986},
pmid = {36768304}
}
@article{lin170713,
title = {A Healthy Vaginal Microbiota Remains Stable during Oral Probiotic Supplementation: A Randomised Controlled Trial.},
author = {Lyra A, Ala-Jaakkola R, Yeung N, Datta N, Evans K, Hibberd A, Lehtinen MJ, Forssten SD, Ibarra A, Pesonen T, Junnila J, Ouwehand AC, Baranowski K, Maukonen J, Crawford G, Lehtoranta L.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11020499},
pmid = {36838464}
}
@article{lin170723,
title = {Synthetic biology-inspired cell engineering in diagnosis, treatment, and drug development.},
author = {Zhao N, Song Y, Xie X, Zhu Z, Duan C, Nong C, Wang H, Bao R.},
journal = {Signal Transduct Target Ther},
year = {2023},
doi = {10.1038/s41392-023-01375-x},
pmid = {36906608}
}
@article{lin170783,
title = {Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut.},
author = {Foley MH, Walker ME, Stewart AK, O'Flaherty S, Gentry EC, Patel S, Beaty VV, Allen G, Pan M, Simpson JB, Perkins C, Vanhoy ME, Dougherty MK, McGill SK, Gulati AS, Dorrestein PC, Baker ES, Redinbo MR, Barrangou R, Theriot CM.},
journal = {Nat Microbiol},
year = {2023},
doi = {10.1038/s41564-023-01337-7},
pmid = {36914755}
}
@article{lin170610,
title = {A systematically biosynthetic investigation of lactic acid bacteria reveals diverse antagonistic bacteriocins that potentially shape the human microbiome.},
author = {Zhang D, Zhang J, Kalimuthu S, Liu J, Song ZM, He BB, Cai P, Zhong Z, Feng C, Neelakantan P, Li YX.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01540-y},
pmid = {37101246}
}
@article{lin170702,
title = {Modulation of the Gut Microbiota by Tomato Flours Obtained after Conventional and Ohmic Heating Extraction and Its Prebiotic Properties.},
author = {Coelho MC, Costa C, Roupar D, Silva S, Rodrigues AS, Teixeira JA, Pintado ME.},
journal = {Foods},
year = {2023},
doi = {10.3390/foods12091920},
pmid = {37174457}
}
@article{lin170675,
title = {Engineering bacteria to modulate host metabolism.},
author = {Ciocan D, Elinav E.},
journal = {Acta Physiol (Oxf)},
year = {2023},
doi = {10.1111/apha.14001},
pmid = {37222395}
}
@article{lin170629,
title = {Probiotic Properties and Antioxidant Activity In Vitro of Lactic Acid Bacteria.},
author = {Vougiouklaki D, Tsironi T, Tsantes AG, Tsakali E, Van Impe JFM, Houhoula D.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11051264},
pmid = {37317238}
}
@article{lin170663,
title = {Dual 6Pbeta-Galactosidase/6Pbeta-Glucosidase GH1 Family for Lactose Metabolism in the Probiotic Bacterium Lactiplantibacillus plantarum WCFS1.},
author = {Plaza-Vinuesa L, Sanchez-Arroyo A, Moreno FJ, de Las Rivas B, Munoz R.},
journal = {J Agric Food Chem},
year = {2023},
doi = {10.1021/acs.jafc.3c01158},
pmid = {37409693}
}
@article{lin170649,
title = {Comparison of the effects of probiotic strains (Lactobacillus gasseri, Lactiplantibacillus plantarum, Lactobacillus acidophilus, and Limosilactobacillus fermentum) isolated from human and food products on the immune response of CT26 tumor-bearing mice.},
author = {Hatami S, Yavarmanesh M, Sankian M.},
journal = {Braz J Microbiol},
year = {2023},
doi = {10.1007/s42770-023-01060-9},
pmid = {37430135}
}
@article{lin170695,
title = {Host-bacteriome transplants of the schistosome snail host Biomphalaria glabrata reflect species-specific associations.},
author = {Schols R, Vanoverberghe I, Huyse T, Decaestecker E.},
journal = {FEMS Microbiol Ecol},
year = {2023},
doi = {10.1093/femsec/fiad101},
pmid = {37632232}
}
@article{lin170674,
title = {Bioluminescent monitoring of recombinant lactic acid bacteria and their products.},
author = {Choi IY, Oh J-H, Wang Z, van Pijkeren J-P.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.01197-23},
pmid = {37668408}
}
@article{lin170644,
title = {Promising application of probiotic microorganisms as Pickering emulsions stabilizers.},
author = {Nejadmansouri M, Eskandari MH, Yousefi GH, Riazi M, Hosseini SMH.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-43087-w},
pmid = {37741896}
}
@article{lin170668,
title = {Under conditions closely mimicking vaginal fluid, Lactobacillus jensenii strain 62B produces a bacteriocin-like inhibitory substance that targets and eliminates Gardnerella species.},
author = {Navarro S, Abla H, Colmer-Hamood JA, Ventolini G, Hamood AN.},
journal = {Microbiology (Reading)},
year = {2023},
doi = {10.1099/mic.0.001409},
pmid = {37909284}
}
@article{lin170688,
title = {Genomic and transcriptomic analysis of Ligilactobacillus salivarius IBB3154-in search of new promoters for vaccine construction.},
author = {Kobierecka P, Wyszynska A, Aleksandrzak-Piekarczyk T, Salanska A, Gawor J, Bardowski J, Jagusztyn Krynicka KE.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.02844-23},
pmid = {37982628}
}
@article{lin170633,
title = {Selective utilization of gluco-oligosaccharides by lactobacilli: A mechanism study revealing the impact of glycosidic linkages and degree of polymerization on their utilization.},
author = {Zeng M, Oh JH, van Pijkeren JP, Pan X.},
journal = {J Food Sci},
year = {2024},
doi = {10.1111/1750-3841.16851},
pmid = {38010727}
}
@article{lin170605,
title = {Detection and absolute quantification of Lactiplantibacillus plantarum ATCC 202195 by quantitative real-time PCR.},
author = {Shawon J, Pell LG, Kabir M, Evans K, Hasan M, Li G, Qamar H, Starke CWE, Kurukulasuriya S, Al Mahmud A, Sherman PM, Sarker SA, Roth DE, Haque R.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.02711-23},
pmid = {38018977}
}
@article{lin384932,
title = {A simple method that enhances minority species detection in the microbiota: 16S metagenome-DRIP (Deeper Resolution using an Inhibitory Primer).},
author = {Nakajima A, Yoshida K, Gotoh A, Katoh T, Ojima MN, Sakanaka M, Xiao JZ, Odamaki T, Katayama T.},
journal = {Microbiome Res Rep},
year = {2022},
doi = {10.20517/mrr.2022.08},
pmid = {38046362}
}
@article{lin170625,
title = {The modulatory effect of Lactobacillus gasseri ATCC 33323 on autophagy induced by extracellular vesicles of Helicobacter pylori in gastric epithelial cells in vitro.},
author = {Sadeghloo Z, Saffarian P, Hakemi-Vala M, Sadeghi A, Yadegar A.},
journal = {Microb Pathog},
year = {2024},
doi = {10.1016/j.micpath.2024.106559},
pmid = {38272328}
}
@article{lin170692,
title = {Vaginal community state types (CSTs) alter environmental cues and production of the Staphylococcus aureus toxic shock syndrome toxin-1 (TSST-1).},
author = {Maduta CS, McCormick JK, Dufresne K.},
journal = {J Bacteriol},
year = {2024},
doi = {10.1128/jb.00447-23},
pmid = {38334326}
}
@article{lin384919,
title = {Evaluation of purine-nucleoside degrading ability and in vivo uric acid lowering of Streptococcus thermophilus IDCC 2201, a novel antiuricemia strain.},
author = {Kim D, Moon JS, Kim JE, Jang YJ, Choi HS, Oh I.},
journal = {PLoS One},
year = {2024},
doi = {10.1371/journal.pone.0293378},
pmid = {38386624}
}
@article{lin170660,
title = {Effect of Blueberry Supplementation on a Diet-Induced Rat Model of Prediabetes-Focus on Hepatic Lipid Deposition, Endoplasmic Stress Response and Autophagy.},
author = {Ferreira G, Vieira P, Alves A, Nunes S, Preguica I, Martins-Marques T, Ribeiro T, Girao H, Figueirinha A, Salgueiro L, Pintado M, Gomes P, Viana S, Reis F.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16040513},
pmid = {38398840}
}
@article{lin170603,
title = {Exploring the Possible Impact of Oral Nutritional Supplements on Children's Oral Health: An In Vitro Investigation.},
author = {Anticona C, Hansson L, Johansson I, Lif Holgerson P.},
journal = {Dent J (Basel)},
year = {2024},
doi = {10.3390/dj12030078},
pmid = {38534302}
}
@article{lin170854,
title = {RNA-Based Anti-Inflammatory Effects of Membrane Vesicles Derived from Lactiplantibacillus plantarum.},
author = {Yamasaki-Yashiki S, Kawashima F, Saika A, Hosomi R, Kunisawa J, Katakura Y.},
journal = {Foods},
year = {2024},
doi = {10.3390/foods13060967},
pmid = {38540957}
}
@article{lin170855,
title = {Multifactorial inhibition of Candida albicans by combinations of lactobacilli and probiotic Saccharomyces cerevisiae CNCM I-3856.},
author = {Spacova I, Allonsius CN, De Boeck I, Oerlemans E, Tuyaerts I, Van de Vliet N, van den Broek MFL, Jimenez L, Boyer M, Rodriguez B, Ballet N, Lebeer S.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-59869-9},
pmid = {38654026}
}
@article{lin170608,
title = {Ethanolamine metabolism through two genetically distinct loci enables Klebsiella pneumoniae to bypass nutritional competition in the gut.},
author = {Barnes AJ, Bennett EF, Vezina B, Hudson AW, Hernandez GE, Nutter NA, Bray AS, Nagpal R, Wyres KL, Zafar MA.},
journal = {PLoS Pathog},
year = {2024},
doi = {10.1371/journal.ppat.1012189},
pmid = {38713723}
}
@article{lin384918,
title = {Phenylacetic acid, an anti-vaginitis metabolite produced by the vaginal symbiotic bacterium Chryseobacterium gleum.},
author = {Kwon KM, Kim EH, Sim KH, Lee YJ, Kang EJ, Han KH, Jin JS, Kim DK, Ahn JH, Hwang IH.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-62947-7},
pmid = {38806600}
}
@article{lin170720,
title = {The Yin and Yang of pathogens and probiotics: interplay between Salmonella enterica sv. Typhimurium and Bifidobacterium infantis during co-infection.},
author = {Shaw C, Weimer BC, Gann R, Desai PT, Shah JD.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1387498},
pmid = {38812689}
}
@article{lin170643,
title = {Discovery of an antivirulence compound that targets the Staphylococcus aureus SaeRS two-component system to inhibit toxic shock syndrome toxin-1 production.},
author = {Dufresne K, DiMaggio DA, Maduta CS, Brinsmade SR, McCormick JK.},
journal = {J Biol Chem},
year = {2024},
doi = {10.1016/j.jbc.2024.107455},
pmid = {38852884}
}
@article{lin170642,
title = {Intestinal microbiota imbalance resulted by anti-Toxoplasma gondii immune responses aggravate gut and brain injury.},
author = {Chen J, Zhang C, Yang Z, Wu W, Zou W, Xin Z, Zheng S, Liu R, Yang L, Peng H.},
journal = {Parasit Vectors},
year = {2024},
doi = {10.1186/s13071-024-06349-8},
pmid = {38956725}
}
@article{lin170648,
title = {Development and Evaluation of Microencapsulated Oregano Essential Oil as an Alternative Treatment for Candida albicans Infections.},
author = {Fernandes L, Barco-Tejada A, Blazquez E, Araujo D, Ribeiro A, Silva S, Cusso L, Costa-de-Oliveira S, Rodrigues ME, Henriques M.},
journal = {ACS Appl Mater Interfaces},
year = {2024},
doi = {10.1021/acsami.4c07413},
pmid = {39067028}
}
@article{lin384929,
title = {Contributions of Gamma-Aminobutyric Acid (GABA) Produced by Lactic Acid Bacteria on Food Quality and Human Health: Current Applications and Future Prospects.},
author = {Icer MA, Sarikaya B, Kocyigit E, Atabilen B, Celik MN, Capasso R, Agagunduz D, Budan F.},
journal = {Foods},
year = {2024},
doi = {10.3390/foods13152437},
pmid = {39123629}
}
@article{lin384917,
title = {Hydrolysis of oligosaccharides in the gastrointestinal tract alters their prebiotic effects on probiotic strains.},
author = {Lee WM, Song YB, Han KS, Sim WS, Lee BH.},
journal = {Food Sci Biotechnol},
year = {2024},
doi = {10.1007/s10068-023-01474-z},
pmid = {39130657}
}
@article{lin170640,
title = {Vaginal Lactobacillus fatty acid response mechanisms reveal a metabolite-targeted strategy for bacterial vaginosis treatment.},
author = {Zhu M, Frank MW, Radka CD, Jeanfavre S, Xu J, Tse MW, Pacheco JA, Kim JS, Pierce K, Deik A, Hussain FA, Elsherbini J, Hussain S, Xulu N, Khan N, Pillay V, Mitchell CM, Dong KL, Ndung'u T, Clish CB, Rock CO, Blainey PC, Bloom SM, Kwon DS.},
journal = {Cell},
year = {2024},
doi = {10.1016/j.cell.2024.07.029},
pmid = {39163861}
}
@article{lin170851,
title = {Disclosing alpha-lactalbumin impact on the intestinal and vaginal microbiota of women suffering from polycystic ovary syndrome.},
author = {Alessandri G, Mancabelli L, Fontana F, Lepore E, Forte G, Burratti M, Ventura M, Turroni F.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.14540},
pmid = {39364592}
}
@article{lin170672,
title = {Exploring the Probiotic Potential of Bacteroides spp. Within One Health Paradigm.},
author = {Tufail MA, Schmitz RA.},
journal = {Probiotics Antimicrob Proteins},
year = {2025},
doi = {10.1007/s12602-024-10370-9},
pmid = {39377977}
}
@article{lin170704,
title = {Nutritional and Microbial Strategies for Treating Acne, Alopecia, and Atopic Dermatitis.},
author = {Borrego-Ruiz A, Borrego JJ.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16203559},
pmid = {39458553}
}
@article{lin170853,
title = {Lactic acid bacteria derived extracellular vesicles: emerging bioactive nanoparticles in modulating host health.},
author = {Li M, Mao B, Tang X, Zhang Q, Zhao J, Chen W, Cui S.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2427311},
pmid = {39538968}
}
@article{lin170627,
title = {Enhancement of gamma-aminobutyric acid in fermented cucumbers.},
author = {Moore JF, Johanningsmeier SD, Perez-Diaz IM.},
journal = {J Food Sci},
year = {2024},
doi = {10.1111/1750-3841.17542},
pmid = {39617748}
}
@article{lin170606,
title = {Effects of fermentation conditions (salt concentration, temperature, and pH) on Lactobacillus strains for induction of interleukin-12 in the exposed murine splenocytes.},
author = {Hadinia N, Yavarmanesh M, Edalatian Dovom MR.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e39837},
pmid = {39619592}
}
@article{lin170634,
title = {Modified vaginal lactobacilli expressing fluorescent and luminescent proteins for more effective monitoring of their release from nanofibers, safety and cell adhesion.},
author = {Stojanov S, Plavec TV, Zupancic S, Berlec A.},
journal = {Microb Cell Fact},
year = {2024},
doi = {10.1186/s12934-024-02612-w},
pmid = {39696572}
}
@article{lin170678,
title = {Genome Mining and Characterization of Two Novel Lacticaseibacillus rhamnosus Probiotic Candidates with Bile Salt Hydrolase Activity.},
author = {Agolino G, Cristofolini M, Vaccalluzzo A, Tagliazucchi D, Cattivelli A, Pino A, Caggia C, Solieri L, Randazzo CL.},
journal = {Biomolecules},
year = {2025},
doi = {10.3390/biom15010086},
pmid = {39858480}
}
@article{lin384931,
title = {Evidence for the Worldwide Distribution of a Bile Salt Hydrolase Gene in Enterococcus faecium Through Horizontal Gene Transfer.},
author = {Kusada H, Tamaki H.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms26020612},
pmid = {39859326}
}
@article{lin384912,
title = {Microencapsulation of Probiotics for Enhanced Stability and Health Benefits in Dairy Functional Foods: A Focus on Pasta Filata Cheese.},
author = {D'Amico V, Cavaliere M, Ivone M, Lacassia C, Celano G, Vacca M, la Forgia FM, Fontana S, De Angelis M, Denora N, Lopedota AA.},
journal = {Pharmaceutics},
year = {2025},
doi = {10.3390/pharmaceutics17020185},
pmid = {40006552}
}
@article{lin384922,
title = {Deciphering the anti-obesity mechanisms of pharmabiotic probiotics through advanced multiomics analysis.},
author = {Kim YR, Choi TR, Jo SH, Song WS, Kim T, Kim MG, Baek JH, Kwon SY, Choi BG, Seo SW, Jang CS, Yang YH, Kim YG.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.111890},
pmid = {40017507}
}
@article{lin170679,
title = {Metabolic engineering of Lactobacilli spp. for disease treatment.},
author = {Yang Y, Yu P, Huang Y, Zhang W, Nie Y, Gao C.},
journal = {Microb Cell Fact},
year = {2025},
doi = {10.1186/s12934-025-02682-4},
pmid = {40050843}
}
@article{lin170630,
title = {The insertion of the inverted repeat of an insertion sequence (IS) element from Lacticaseibacillus rhamnosus changes the host range and stability of pGK12, a shuttle vector for lactic acid bacteria.},
author = {Xie Z, Jin Y-S, Klaenhammer TR, Miller MJ.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.01908-24},
pmid = {40084891}
}
@article{lin170707,
title = {Vaginal host immune-microbiome-metabolite interactions associated with spontaneous preterm birth in a predominantly white cohort.},
author = {Cavanagh M, Amabebe E, Kulkarni NS, Papageorgiou MD, Walker H, Wyles MD, Anumba DO.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00671-4},
pmid = {40140683}
}
@article{lin170624,
title = {Variability of Lactic Acid Bacteria in Curcumin Metabolism and Its Biological Implications.},
author = {Luo M, Han Y, Sun Y, Wu Y, Bechtel TD, Wong S, Shen P, Du H, Gibbons JG, Xiao H.},
journal = {J Agric Food Chem},
year = {2025},
doi = {10.1021/acs.jafc.4c08726},
pmid = {40170465}
}
@article{lin170658,
title = {Host-dependent alteration of the gut microbiota: the role of luminal microRNAs.},
author = {Cuinat C, Pan J, Comelli EM.},
journal = {Microbiome Res Rep},
year = {2025},
doi = {10.20517/mrr.2024.46},
pmid = {40207285}
}
@article{lin170657,
title = {Nanobiotechnology Unveils the Power of Probiotics: A Comprehensive Review on the Synergistic Role of Probiotics and Advanced Nanotechnology in Enhancing Geriatric Health.},
author = {Kadam O, Dalai S, Chauhan B, Guru RR, Mitra S, Raytekar N, Kumar R.},
journal = {Cureus},
year = {2025},
doi = {10.7759/cureus.80478},
pmid = {40225478}
}
@article{lin170626,
title = {Probiotic treatment induces sex-dependent neuroprotection and gut microbiome shifts after traumatic brain injury.},
author = {Holcomb M, Marshall AG, Flinn H, Lozano-Cavazos M, Soriano S, Gomez-Pinilla F, Treangen TJ, Villapol S.},
journal = {J Neuroinflammation},
year = {2025},
doi = {10.1186/s12974-025-03419-1},
pmid = {40254574}
}
@article{lin170632,
title = {Development of a highly efficient base editing system for Lactobacilli to improve probiotics and dissect essential functions.},
author = {Mitsunobu H, Kita Y, Nambu-Nishida Y, Miyazaki S, Nakajima K, Taoka KI, Kondo A, Nishida K.},
journal = {Appl Microbiol Biotechnol},
year = {2025},
doi = {10.1007/s00253-025-13489-z},
pmid = {40261411}
}
@article{lin170662,
title = {Calcium modulates growth and biofilm formation of Lactobacillus acidophilus ATCC 4356 and Lactiplantibacillus plantarum ATCC 14917.},
author = {Huynh U, King J, Zastrow ML.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-98577-w},
pmid = {40274962}
}
@article{lin170659,
title = {The Obesity-Epigenetics-Microbiome Axis: Strategies for Therapeutic Intervention.},
author = {Nohesara S, Mostafavi Abdolmaleky H, Pirani A, Pettinato G, Thiagalingam S.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17091564},
pmid = {40362873}
}
@article{lin384914,
title = {Bacterial Species in Engineered Living Materials: Strategies and Future Directions.},
author = {Wang H, Li C, Wang Y, Zhang H.},
journal = {Microb Biotechnol},
year = {2025},
doi = {10.1111/1751-7915.70164},
pmid = {40407296}
}
@article{lin170647,
title = {Inhibitory effects of Levilactobacillus brevis IBRC-M10790 on apoptosis and inflammation induced by Clostridioides difficile culture supernatant in vitro.},
author = {Azimirad M, Noori M, Emami Meibodi A, Alipour S, Salehi T, Zali MR, Yadegar A.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-04975-5},
pmid = {40514400}
}
@article{lin170631,
title = {Oral delivery of GLP-1 peptide using recombinant Lactobacillus gasseri for the treatment of type 2 diabetes mellitus.},
author = {Ke Z, Ma Q, Ye X, Jin Y, Wang Y, Zhao X, Su Z.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.02828-24},
pmid = {40530879}
}
@article{lin170852,
title = {Late-onset sepsis treatment in very preterm infants alters longitudinal microbiome trajectory with lower abundance of Bifidobacterium despite probiotic supplementation.},
author = {Healy DB, Wang S, Patangia D, Grimaud G, Ross RP, Stanton C, Dempsey EM.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2523808},
pmid = {40618372}
}
@article{lin170636,
title = {Differential modulation of post-antibiotic colonization resistance to Clostridioides difficile by two probiotic Lactobacillus strains.},
author = {Foley MH, McMillan AS, O'Flaherty S, Thanissery R, Vanhoy ME, Fuller MG, Barrangou R, Theriot CM.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.01468-25},
pmid = {40689613}
}
@article{lin170639,
title = {Beyond antibiotics: probiotics as a promising ally against Helicobacter pylori.},
author = {Yuan L, Yang C, Han Y, Yang F, Tu H.},
journal = {Front Pharmacol},
year = {2025},
doi = {10.3389/fphar.2025.1620870},
pmid = {40717984}
}
@article{lin170638,
title = {Screening and evaluation of purines-degrading lactic acid bacteria isolated from traditional fermented foods in Yunnan Province and their uric acid-lowering effects in vivo.},
author = {Liu Z, Zou XY, Yue J, Li S, Ou X, Huang C, Liu CJ, Li XR.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1627956},
pmid = {40756207}
}
@article{lin384911,
title = {Synbiotic yogurt with nanoparticle entrapped rice straw hemicellulose for immediate probiotic support and prebiotic delivery.},
author = {Ismail SA, Fayed B, El-Sayed HS, Taie HAA, Hassan AA.},
journal = {NPJ Sci Food},
year = {2025},
doi = {10.1038/s41538-025-00539-z},
pmid = {40825779}
}
@article{lin170637,
title = {Emerging Roles of the Gut Microbiome in Musculoskeletal Injury and Repair.},
author = {Roberts JL, Park CC.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13092193},
pmid = {41011526}
}
@article{lin170628,
title = {Vapor phase of white thyme essential oil: effect on Candida albicans and preservation of Lactobacillus species in the context of vulvovaginal candidiasis.},
author = {Fernandes L, Silva I, Araujo D, Costa R, Silva S, Mira NP, Costa-de-Oliveira S, Henriques M, Rodrigues ME.},
journal = {BMC Complement Med Ther},
year = {2025},
doi = {10.1186/s12906-025-05067-7},
pmid = {41053752}
}
@article{lin170656,
title = {Natural Molecules, Nutraceuticals, and Engineered Nanosystems: A Comprehensive Strategy for Combating Gardnerella vaginalis-Induced Bacterial Vaginosis.},
author = {Dalabehera M, Alhudhaibi AM, Abdallah EM, Taha TH, Chaudhari S, Kumari A, Subudhi RN, Rathore C.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13102411},
pmid = {41156869}
}