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title = {Evidence for a lineage of virulent bacteriophages that target Campylobacter.},
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title = {Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins.},
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title = {Molecular evolution of urea amidolyase and urea carboxylase in fungi.},
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journal = {BMC Evol Biol},
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title = {Rapid identification and quantification of Campylobacter coli and Campylobacter jejuni by real-time PCR in pure cultures and in complex samples.},
author = {Leblanc-Maridor M, Beaudeau F, Seegers H, Denis M, Belloc C.},
journal = {BMC Microbiol},
year = {2011},
doi = {10.1186/1471-2180-11-113},
pmid = {21600037}
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@article{lin165655,
title = {Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction.},
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journal = {BMC Microbiol},
year = {2012},
doi = {10.1186/1471-2180-12-21},
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title = {The zinc-ribbon domain of Helicobacter pylori HP0958: requirement for RpoN accumulation and possible roles of homologs in other bacteria.},
author = {Pereira LE, Tsang J, Mrazek J, Hoover TR.},
journal = {Microb Inform Exp},
year = {2011},
doi = {10.1186/2042-5783-1-8},
pmid = {22408721}
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title = {Xer recombinase and genome integrity in Helicobacter pylori, a pathogen without topoisomerase IV.},
author = {Debowski AW, Carnoy C, Verbrugghe P, Nilsson HO, Gauntlett JC, Fulurija A, Camilleri T, Berg DE, Marshall BJ, Benghezal M.},
journal = {PLoS One},
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@article{lin165667,
title = {Deamination of 6-aminodeoxyfutalosine in menaquinone biosynthesis by distantly related enzymes.},
author = {Goble AM, Toro R, Li X, Ornelas A, Fan H, Eswaramoorthy S, Patskovsky Y, Hillerich B, Seidel R, Sali A, Shoichet BK, Almo SC, Swaminathan S, Tanner ME, Raushel FM.},
journal = {Biochemistry},
year = {2013},
doi = {10.1021/bi400750a},
pmid = {23972005}
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@article{lin165632,
title = {The ha72 core gene of baculovirus is essential for budded virus production and occlusion-derived virus embedding, and amino acid K22 plays an important role in its function.},
author = {Huang H, Wang M, Deng F, Hou D, Arif BM, Wang H, Hu Z.},
journal = {J Virol},
year = {2014},
doi = {10.1128/jvi.02281-13},
pmid = {24089571}
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@article{lin165621,
title = {Refined NrfA phylogeny improves PCR-based nrfA gene detection.},
author = {Welsh A, Chee-Sanford JC, Connor LM, Loffler FE, Sanford RA.},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.03443-13},
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@article{lin165620,
title = {Presence and analysis of plasmids in human and animal associated arcobacter species.},
author = {Douidah L, De Zutter L, Van Nieuwerburgh F, Deforce D, Ingmer H, Vandenberg O, Van den Abeele AM, Houf K.},
journal = {PLoS One},
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@article{lin165676,
title = {Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.},
author = {Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.},
journal = {Genes (Basel)},
year = {2011},
doi = {10.3390/genes2040869},
pmid = {24710297}
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@article{lin165633,
title = {hypD as a marker for [NiFe]-hydrogenases in microbial communities of surface waters.},
author = {Beimgraben C, Gutekunst K, Opitz F, Appel J.},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.00690-14},
pmid = {24727276}
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@article{lin165641,
title = {Helical shape of Helicobacter pylori requires an atypical glutamine as a zinc ligand in the carboxypeptidase Csd4.},
author = {Chan AC, Blair KM, Liu Y, Frirdich E, Gaynor EC, Tanner ME, Salama NR, Murphy ME.},
journal = {J Biol Chem},
year = {2015},
doi = {10.1074/jbc.m114.624734},
pmid = {25505267}
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@article{lin165627,
title = {Pan-genome analysis of human gastric pathogen H. pylori: comparative genomics and pathogenomics approaches to identify regions associated with pathogenicity and prediction of potential core therapeutic targets.},
author = {Ali A, Naz A, Soares SC, Bakhtiar M, Tiwari S, Hassan SS, Hanan F, Ramos R, Pereira U, Barh D, Figueiredo HC, Ussery DW, Miyoshi A, Silva A, Azevedo V.},
journal = {Biomed Res Int},
year = {2015},
doi = {10.1155/2015/139580},
pmid = {25705648}
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@article{lin165618,
title = {Recent Origin of the Methacrylate Redox System in Geobacter sulfurreducens AM-1 through Horizontal Gene Transfer.},
author = {Arkhipova OV, Meer MV, Mikoulinskaia GV, Zakharova MV, Galushko AS, Akimenko VK, Kondrashov FA.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0125888},
pmid = {25962149}
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@article{lin165707,
title = {Helicobacteraceae in Bulk Tank Milk of Dairy Herds from Northern Italy.},
author = {Bianchini V, Recordati C, Borella L, Gualdi V, Scanziani E, Selvatico E, Luini M.},
journal = {Biomed Res Int},
year = {2015},
doi = {10.1155/2015/639521},
pmid = {26090429}
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@article{lin165623,
title = {Diversity of the Epsilonproteobacteria Dsb (disulfide bond) systems.},
author = {Bocian-Ostrzycka KM, Grzeszczuk MJ, Dziewit L, Jagusztyn-Krynicka EK.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00570},
pmid = {26106374}
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@article{lin165628,
title = {Distribution and Genetic Diversity of Bacteriocin Gene Clusters in Rumen Microbial Genomes.},
author = {Azevedo AC, Bento CB, Ruiz JC, Queiroz MV, Mantovani HC.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.01223-15},
pmid = {26253660}
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@article{lin165625,
title = {Biosynthesis of selenium nanoparticles by Azoarcus sp. CIB.},
author = {Fernandez-Llamosas H, Castro L, Blazquez ML, Diaz E, Carmona M.},
journal = {Microb Cell Fact},
year = {2016},
doi = {10.1186/s12934-016-0510-y},
pmid = {27301452}
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@article{lin165666,
title = {Novel Immunomodulatory Flagellin-Like Protein FlaC in Campylobacter jejuni and Other Campylobacterales.},
author = {Faber E, Gripp E, Maurischat S, Kaspers B, Tedin K, Menz S, Zuraw A, Kershaw O, Yang I, Rautenschlein S, Josenhans C.},
journal = {mSphere},
year = {2016},
doi = {10.1128/msphere.00028-15},
pmid = {27303676}
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@article{lin165672,
title = {The novel regulatory ncRNA, NfiS, optimizes nitrogen fixation via base pairing with the nitrogenase gene nifK mRNA in Pseudomonas stutzeri A1501.},
author = {Zhan Y, Yan Y, Deng Z, Chen M, Lu W, Lu C, Shang L, Yang Z, Zhang W, Wang W, Li Y, Ke Q, Lu J, Xu Y, Zhang L, Xie Z, Cheng Q, Elmerich C, Lin M.},
journal = {Proc Natl Acad Sci U S A},
year = {2016},
doi = {10.1073/pnas.1604514113},
pmid = {27407147}
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@article{lin165686,
title = {An In Silico Approach for Identification of the Pathogenic Species, Helicobacter pylori and Its Relatives.},
author = {Puri A, Rai A, Dhanaraj PS, Lal R, Patel DD, Kaicker A, Verma M.},
journal = {Indian J Microbiol},
year = {2016},
doi = {10.1007/s12088-016-0575-7},
pmid = {27407291}
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@article{lin165622,
title = {Unique and Universal Features of Epsilonproteobacterial Origins of Chromosome Replication and DnaA-DnaA Box Interactions.},
author = {Jaworski P, Donczew R, Mielke T, Thiel M, Oldziej S, Weigel C, Zawilak-Pawlik A.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.01555},
pmid = {27746772}
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@article{lin165619,
title = {Model-based quantification of metabolic interactions from dynamic microbial-community data.},
author = {Hanemaaijer M, Olivier BG, Roling WF, Bruggeman FJ, Teusink B.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0173183},
pmid = {28278266}
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@article{lin165616,
title = {Whole genome-based phylogeny of reptile-associated Helicobacter indicates independent niche adaptation followed by diversification in a poikilothermic host.},
author = {Gilbert MJ, Duim B, Timmerman AJ, Zomer AL, Wagenaar JA.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-09091-7},
pmid = {28827684}
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@article{lin165615,
title = {Evolution of higher torque in Campylobacter-type bacterial flagellar motors.},
author = {Chaban B, Coleman I, Beeby M.},
journal = {Sci Rep},
year = {2018},
doi = {10.1038/s41598-017-18115-1},
pmid = {29311627}
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@article{lin165626,
title = {Investigating the Campylobacter jejuni Transcriptional Response to Host Intestinal Extracts Reveals the Involvement of a Widely Conserved Iron Uptake System.},
author = {Liu MM, Boinett CJ, Chan ACK, Parkhill J, Murphy MEP, Gaynor EC.},
journal = {mBio},
year = {2018},
doi = {10.1128/mbio.01347-18},
pmid = {30087169}
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@article{lin165642,
title = {Role of Mitochondria in Regulating Lutein and Chlorophyll Biosynthesis in Chlorella pyrenoidosa under Heterotrophic Conditions.},
author = {Liu ZH, Li T, He QY, Sun Z, Jiang Y.},
journal = {Mar Drugs},
year = {2018},
doi = {10.3390/md16100354},
pmid = {30274203}
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@article{lin165613,
title = {In silico Analysis Suggests Common Appearance of scaRNAs in Type II Systems and Their Association With Bacterial Virulence.},
author = {Guzina J, Chen WH, Stankovic T, Djordjevic M, Zdobnov E, Djordjevic M.},
journal = {Front Genet},
year = {2018},
doi = {10.3389/fgene.2018.00474},
pmid = {30386377}
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@article{lin165612,
title = {Diverse hydrogen production and consumption pathways influence methane production in ruminants.},
author = {Greening C, Geier R, Wang C, Woods LC, Morales SE, McDonald MJ, Rushton-Green R, Morgan XC, Koike S, Leahy SC, Kelly WJ, Cann I, Attwood GT, Cook GM, Mackie RI.},
journal = {ISME J},
year = {2019},
doi = {10.1038/s41396-019-0464-2},
pmid = {31243332}
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@article{lin165614,
title = {Regulation of Respiratory Pathways in Campylobacterota: A Review.},
author = {van der Stel AX, Wosten MMSM.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.01719},
pmid = {31417516}
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@article{lin165617,
title = {Characterization of variations within the rumen metaproteome of Holstein dairy cattle relative to morning feed offering.},
author = {Honan MC, Greenwood SL.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-59974-5},
pmid = {32081893}
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@article{lin165675,
title = {Information theoretic perspective on genome clustering.},
author = {Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.},
journal = {Saudi J Biol Sci},
year = {2021},
doi = {10.1016/j.sjbs.2020.12.039},
pmid = {33732074}
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@article{lin165685,
title = {Comparative Genomic Analysis of the DUF34 Protein Family Suggests Role as a Metal Ion Chaperone or Insertase.},
author = {Reed CJ, Hutinet G, de Crecy-Lagard V.},
journal = {Biomolecules},
year = {2021},
doi = {10.3390/biom11091282},
pmid = {34572495}
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@article{lin165629,
title = {Effect of Temperature and Cell Viability on Uranium Biomineralization by the Uranium Mine Isolate Penicillium simplicissimum.},
author = {Schaefer S, Steudtner R, Hubner R, Krawczyk-Barsch E, Merroun ML.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.802926},
pmid = {35003034}
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@article{lin165624,
title = {Single-stranded DNA recruitment mechanism in replication origin unwinding by DnaA initiator protein and HU, an evolutionary ubiquitous nucleoid protein.},
author = {Yoshida R, Ozaki S, Kawakami H, Katayama T.},
journal = {Nucleic Acids Res},
year = {2023},
doi = {10.1093/nar/gkad389},
pmid = {37178000}
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@article{lin165610,
title = {FlgV forms a flagellar motor ring that is required for optimal motility of Helicobacter pylori.},
author = {Botting JM, Tachiyama S, Gibson KH, Liu J, Starai VJ, Hoover TR.},
journal = {PLoS One},
year = {2023},
doi = {10.1371/journal.pone.0287514},
pmid = {37976320}
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@article{lin165611,
title = {- Invited Review - Hydrogen production and hydrogen utilization in the rumen: key to mitigating enteric methane production.},
author = {Mackie RI, Kim H, Kim NK, Cann I.},
journal = {Anim Biosci},
year = {2024},
doi = {10.5713/ab.23.0294},
pmid = {38186257}
}