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title = {Site-directed mutagenesis and halophilicity of dihydrolipoamide dehydrogenase from the halophilic archaeon, Haloferax volcanii.},
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journal = {Glycobiology},
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@article{lin411754,
title = {Structural features of halophilicity derived from the crystal structure of dihydrofolate reductase from the Dead Sea halophilic archaeon, Haloferax volcanii.},
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journal = {Structure},
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@article{lin411718,
title = {Mechanosensitive ion channels of the archaeon Haloferax volcanii.},
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title = {Aminoacyl-tRNA synthesis in Archaea.},
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journal = {Nucleic Acids Symp Ser},
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@article{lin411695,
title = {Operation of glyoxylate cycle in halophilic archaea: presence of malate synthase and isocitrate lyase in Haloferax volcanii.},
author = {Serrano JA, Camacho M, Bonete MJ.},
journal = {FEBS Lett},
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@article{lin162880,
title = {Phylogenetic analysis of nonthermophilic members of the kingdom crenarchaeota and their diversity and abundance in soils },
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journal = {Appl Environ Microbiol},
year = {1998},
doi = {10.1128/aem.64.11.4333-4339.1998},
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@article{lin411740,
title = {Gentisate 1,2-dioxygenase from Haloferax sp. D1227.},
author = {Fu W, Oriel P.},
journal = {Extremophiles},
year = {1998},
doi = {10.1007/s007920050090},
pmid = {9827334}
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@article{lin411694,
title = {Extensive proteolysis inhibits high-level production of eukaryal G protein-coupled receptors in the archaeon Haloferax volcanii.},
author = {Patenge N, Soppa J.},
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@article{lin411699,
title = {Heterologous expression in the Archaea: transcription from Pyrococcus furiosus gdh and mlrA promoters in Haloferax volcanii.},
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journal = {Extremophiles},
year = {1999},
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title = {Expression, reactivation, and purification of enzymes from Haloferax volcanii in Escherichia coli.},
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@article{lin411690,
title = {Expression and heat-responsive regulation of a TFIIB homologue from the archaeon Haloferax volcanii.},
author = {Thompson DK, Palmer JR, Daniels CJ.},
journal = {Mol Microbiol},
year = {1999},
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@article{lin411693,
title = {Unique recognition style of tRNA(Leu) by Haloferax volcanii leucyl-tRNA synthetase.},
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journal = {J Mol Biol},
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@article{lin411642,
title = {The extremely halophilic archaeon Haloferax volcanii has two very different dihydrofolate reductases.},
author = {Ortenberg R, Rozenblatt-Rosen O, Mevarech M.},
journal = {Mol Microbiol},
year = {2000},
doi = {10.1046/j.1365-2958.2000.01815.x},
pmid = {10760149}
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@article{lin411731,
title = {Molecular cloning of A1-ATPase gene from extremely halophilic archaeon Haloarcula japonica strain TR-1.},
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journal = {Nucleic Acids Symp Ser},
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@article{lin411682,
title = {The cell surface glycoprotein layer of the extreme halophile Halobacterium salinarum and its relation to Haloferax volcanii: cryo-electron tomography of freeze-substituted cells and projection studies of negatively stained envelopes.},
author = {Trachtenberg S, Pinnick B, Kessel M.},
journal = {J Struct Biol},
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pmid = {10806087}
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@article{lin411663,
title = {Evidence for post-translational membrane insertion of the integral membrane protein bacterioopsin expressed in the heterologous halophilic archaeon Haloferax volcanii.},
author = {Ortenberg R, Mevarech M.},
journal = {J Biol Chem},
year = {2000},
doi = {10.1074/jbc.m908916199},
pmid = {10807928}
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@article{lin411652,
title = {Characterization of acetohydroxy acid synthase activity in the archaeon Haloferax volcanii.},
author = {Vyazmensky M, Barak Z, Chipman DM, Eichler J.},
journal = {Comp Biochem Physiol B Biochem Mol Biol},
year = {2000},
doi = {10.1016/s0305-0491(99)00170-4},
pmid = {10817907}
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@article{lin411665,
title = {Identities and phylogenetic comparisons of posttranscriptional modifications in 16 S ribosomal RNA from Haloferax volcanii.},
author = {Kowalak JA, Bruenger E, Crain PF, McCloskey JA.},
journal = {J Biol Chem},
year = {2000},
doi = {10.1074/jbc.m002153200},
pmid = {10818097}
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@article{lin411643,
title = {Novel glycoproteins of the halophilic archaeon Haloferax volcanii.},
author = {Eichler J.},
journal = {Arch Microbiol},
year = {2000},
doi = {10.1007/s002030000152},
pmid = {10896226}
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@article{lin411727,
title = {Importance of the anticodon sequence in the aminoacylation of tRNAs by methionyl-tRNA synthetase and by valyl-tRNA synthetase in an Archaebacterium.},
author = {Ramesh V, RajBhandary UL.},
journal = {J Biol Chem},
year = {2001},
doi = {10.1074/jbc.m008206200},
pmid = {11058596}
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@article{lin411630,
title = {A new simvastatin (mevinolin)-resistance marker from Haloarcula hispanica and a new Haloferax volcanii strain cured of plasmid pHV2.},
author = {Wendoloski D, Ferrer C, Dyall-Smith ML.},
journal = {Microbiology (Reading)},
year = {2001},
doi = {10.1099/00221287-147-4-959},
pmid = {11283291}
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@article{lin411791,
title = {Use of a halobacterial bgaH reporter gene to analyse the regulation of gene expression in halophilic archaea.},
author = {Gregor D, Pfeifer F.},
journal = {Microbiology (Reading)},
year = {2001},
doi = {10.1099/00221287-147-7-1745},
pmid = {11429452}
}
@article{lin411638,
title = {Post-translational modification of the S-layer glycoprotein occurs following translocation across the plasma membrane of the haloarchaeon Haloferax volcanii.},
author = {Eichler J.},
journal = {Eur J Biochem},
year = {2001},
doi = {10.1046/j.1432-1327.2001.02361.x},
pmid = {11488933}
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@article{lin411606,
title = {Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.},
author = {Serrano JA, Bonete MJ.},
journal = {Biochim Biophys Acta},
year = {2001},
doi = {10.1016/s0167-4781(01)00263-9},
pmid = {11513957}
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@article{lin411742,
title = {Characterization of RNase P holoenzymes from Methanococcus jannaschii and Methanothermobacter thermoautotrophicus.},
author = {Andrews AJ, Hall TA, Brown JW.},
journal = {Biol Chem},
year = {2001},
doi = {10.1515/bc.2001.147},
pmid = {11592398}
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@article{lin411608,
title = {Characterization of inverted membrane vesicles from the halophilic archaeon Haloferax volcanii.},
author = {Ring G, Eichler J.},
journal = {J Membr Biol},
year = {2001},
doi = {10.1007/s00232-001-0067-4},
pmid = {11696861}
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@article{lin411593,
title = {tRNA 3' end maturation in archaea has eukaryotic features: the RNase Z from Haloferax volcanii.},
author = {Schierling K, Rosch S, Rupprecht R, Schiffer S, Marchfelder A.},
journal = {J Mol Biol},
year = {2002},
doi = {10.1006/jmbi.2001.5395},
pmid = {11884130}
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@article{lin411735,
title = {Regulation of gas vesicle formation in halophilic archaea.},
author = {Pfeifer F, Gregor D, Hofacker A, Plosser P, Zimmermann P.},
journal = {J Mol Microbiol Biotechnol},
year = {2002},
pmid = {11931543}
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@article{lin411607,
title = {NADP-dependent isocitrate dehydrogenase from the halophilic archaeon Haloferax volcanii: cloning, sequence determination and overexpression in Escherichia coli.},
author = {Camacho M, Rodriguez-Arnedo A, Bonete MJ.},
journal = {FEMS Microbiol Lett},
year = {2002},
doi = {10.1111/j.1574-6968.2002.tb11125.x},
pmid = {12007799}
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@article{lin411581,
title = {Protein glycosylation in Haloferax volcanii: partial characterization of a 98-kDa glycoprotein.},
author = {Konrad Z, Eichler J.},
journal = {FEMS Microbiol Lett},
year = {2002},
doi = {10.1111/j.1574-6968.2002.tb11131.x},
pmid = {12007805}
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@article{lin411776,
title = {Haloferax alexandrinus sp. nov., an extremely halophilic canthaxanthin-producing archaeon from a solar saltern in Alexandria (Egypt).},
author = {Asker D, Ohta Y.},
journal = {Int J Syst Evol Microbiol},
year = {2002},
doi = {10.1099/00207713-52-3-729},
pmid = {12054232}
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@article{lin411662,
title = {A bZIP protein from halophilic archaea: structural features and dimer formation of cGvpE from Halobacterium salinarum.},
author = {Plosser P, Pfeifer F.},
journal = {Mol Microbiol},
year = {2002},
doi = {10.1046/j.1365-2958.2002.03031.x},
pmid = {12123460}
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@article{lin411739,
title = {The sequence of the major gas vesicle protein, GvpA, influences the width and strength of halobacterial gas vesicles.},
author = {Beard SJ, Hayes PK, Pfeifer F, Walsby AE.},
journal = {FEMS Microbiol Lett},
year = {2002},
doi = {10.1111/j.1574-6968.2002.tb11299.x},
pmid = {12167531}
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@article{lin411611,
title = {The effect of salts on the activity and stability of Escherichia coli and Haloferax volcanii dihydrofolate reductases.},
author = {Wright DB, Banks DD, Lohman JR, Hilsenbeck JL, Gloss LM.},
journal = {J Mol Biol},
year = {2002},
doi = {10.1016/s0022-2836(02)00916-6},
pmid = {12381324}
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@article{lin411728,
title = {Genetic evidence for a novel thymidylate synthase in the halophilic archaeon Halobacterium salinarum and in Campylobacter jejuni.},
author = {Giladi M, Bitan-Banin G, Mevarech M, Ortenberg R.},
journal = {FEMS Microbiol Lett},
year = {2002},
doi = {10.1111/j.1574-6968.2002.tb11422.x},
pmid = {12423760}
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@article{lin411547,
title = {Properties of the chaperonin complex from the halophilic archaeon Haloferax volcanii.},
author = {Large AT, Kovacs E, Lund PA.},
journal = {FEBS Lett},
year = {2002},
doi = {10.1016/s0014-5793(02)03685-2},
pmid = {12482584}
}
@article{lin411775,
title = {Taxonomic characterization of Haloferax sp. (" H. alicantei") strain Aa 2.2: description of Haloferax lucentensis sp. nov.},
author = {Gutierrez MC, Kamekura M, Holmes ML, Dyall-Smith ML, Ventosa A.},
journal = {Extremophiles},
year = {2002},
doi = {10.1007/s00792-002-0282-7},
pmid = {12486456}
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@article{lin411565,
title = {Post-translational secretion of fusion proteins in the halophilic archaea Haloferax volcanii.},
author = {Irihimovitch V, Eichler J.},
journal = {J Biol Chem},
year = {2003},
doi = {10.1074/jbc.m210762200},
pmid = {12566448}
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@article{lin411579,
title = {Differential expression of genes influenced by changing salinity using RNA arbitrarily primed PCR in the archaeal halophile Haloferax volcanii.},
author = {Bidle KA.},
journal = {Extremophiles},
year = {2003},
doi = {10.1007/s00792-002-0289-0},
pmid = {12579374}
}
@article{lin411538,
title = {Isolation of fusion proteins containing SecY and SecE, components of the protein translocation complex from the halophilic archaeon Haloferax volcanii.},
author = {Irihimovitch V, Ring G, Elkayam T, Konrad Z, Eichler J.},
journal = {Extremophiles},
year = {2003},
doi = {10.1007/s00792-002-0297-0},
pmid = {12579382}
}
@article{lin411629,
title = {Effect of amino acid starvation on glucose transport in two archaeal organisms.},
author = {Scoarughi GL, Santino I, Sessa R, Cimmino C, Donini P.},
journal = {FEMS Microbiol Lett},
year = {2003},
doi = {10.1111/j.1574-6968.2003.tb11496.x},
pmid = {12583896}
}
@article{lin411723,
title = {Characterization of a novel plasmid from extremely halophilic Archaea: nucleotide sequence and function analysis.},
author = {Ye X, Ou J, Ni L, Shi W, Shen P.},
journal = {FEMS Microbiol Lett},
year = {2003},
doi = {10.1016/s0378-1097(03)00175-7},
pmid = {12694910}
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@article{lin411559,
title = {Construction and usage of a onefold-coverage shotgun DNA microarray to characterize the metabolism of the archaeon Haloferax volcanii.},
author = {Zaigler A, Schuster SC, Soppa J.},
journal = {Mol Microbiol},
year = {2003},
doi = {10.1046/j.1365-2958.2003.03497.x},
pmid = {12753198}
}
@article{lin411720,
title = {The chaperonins: perspectives from the Archaea.},
author = {Lund PA, Large AT, Kapatai G.},
journal = {Biochem Soc Trans},
year = {2003},
doi = {10.1042/bst0310681},
pmid = {12773182}
}
@article{lin411522,
title = {Genetic analysis of homologous recombination in Archaea: Haloferax volcanii as a model organism.},
author = {Allers T, Ngo HP.},
journal = {Biochem Soc Trans},
year = {2003},
doi = {10.1042/bst0310706},
pmid = {12773188}
}
@article{lin411764,
title = {Recognition of tRNA by aminoacyl-tRNA synthetase from hyperthermophilic archaea, Aeropyrum pernix K1.},
author = {Yokozawa J, Nagaoka Y, Umehara T, Iwaki J, Kawarabayasi Y, Koyama Y, Sako Y, Wakagi T, Kuno A, Hasegawa T.},
journal = {Nucleic Acids Res Suppl},
year = {2001},
doi = {10.1093/nass/1.1.117},
pmid = {12836292}
}
@article{lin411711,
title = {Threonyl-tRNA synthetase of archaea: importance of the discriminator base in the aminoacylation of threonine tRNA.},
author = {Ishikura H, Nagaoka Y, Yokozawa J, Umehara T, Kuno A, Hasegawa T.},
journal = {Nucleic Acids Symp Ser},
year = {2000},
doi = {10.1093/nass/44.1.83},
pmid = {12903279}
}
@article{lin411785,
title = {Cloning and sequencing of ftsZ homolog from extremely halophilic archaeon Haloarcula japonica strain TR-1.},
author = {Kazumichi O, Yatsunami R, Nakamura S.},
journal = {Nucleic Acids Symp Ser},
year = {2000},
doi = {10.1093/nass/44.1.155},
pmid = {12903315}
}
@article{lin411558,
title = {Novel polar lipids of halophilic eubacterium Planococcus H8 and archaeon Haloferax volcanii.},
author = {Sprott GD, Larocque S, Cadotte N, Dicaire CJ, McGee M, Brisson JR.},
journal = {Biochim Biophys Acta},
year = {2003},
doi = {10.1016/j.bbalip.2003.08.001},
pmid = {14499737}
}
@article{lin411582,
title = {The 492-bp RM07 DNA fragment from the halophilic Archaea confers promoter activity in all three domains of life.},
author = {Yang Y, Huang YP, Shen P.},
journal = {Curr Microbiol},
year = {2003},
doi = {10.1007/s00284-003-4034-4},
pmid = {14669915}
}
@article{lin411713,
title = {In vivo studies on putative Shine-Dalgarno sequences of the halophilic archaeon Halobacterium salinarum.},
author = {Sartorius-Neef S, Pfeifer F.},
journal = {Mol Microbiol},
year = {2004},
doi = {10.1046/j.1365-2958.2003.03858.x},
pmid = {14756795}
}
@article{lin411518,
title = {Membrane binding of SRP pathway components in the halophilic archaea Haloferax volcanii.},
author = {Lichi T, Ring G, Eichler J.},
journal = {Eur J Biochem},
year = {2004},
doi = {10.1111/j.1432-1033.2004.04050.x},
pmid = {15030489}
}
@article{lin411514,
title = {Membrane binding of ribosomes occurs at SecYE-based sites in the Archaea Haloferax volcanii.},
author = {Ring G, Eichler J.},
journal = {J Mol Biol},
year = {2004},
doi = {10.1016/j.jmb.2004.01.008},
pmid = {15037064}
}
@article{lin162862,
title = {Survey of archaeal diversity reveals an abundance of halophilic Archaea in a low-salt, sulfide- and sulfur-rich spring.},
author = {Elshahed MS, Najar FZ, Roe BA, Oren A, Dewers TA, Krumholz LR.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.4.2230-2239.2004},
pmid = {15066817}
}
@article{lin411530,
title = {Liposome adjuvants prepared from the total polar lipids of Haloferax volcanii, Planococcus spp. and Bacillus firmus differ in ability to elicit and sustain immune responses.},
author = {Sprott GD, Dicaire CJ, Gurnani K, Deschatelets LA, Krishnan L.},
journal = {Vaccine},
year = {2004},
doi = {10.1016/j.vaccine.2003.11.054},
pmid = {15149772}
}
@article{lin411708,
title = {GvpE- and GvpD-mediated transcription regulation of the p-gvp genes encoding gas vesicles in Halobacterium salinarum.},
author = {Hofacker A, Schmitz KM, Cichonczyk A, Sartorius-Neef S, Pfeifer F.},
journal = {Microbiology (Reading)},
year = {2004},
doi = {10.1099/mic.0.27078-0},
pmid = {15184569}
}
@article{lin411501,
title = {Salt-dependent studies of NADP-dependent isocitrate dehydrogenase from the halophilic archaeon Haloferax volcanii.},
author = {Madern D, Camacho M, Rodriguez-Arnedo A, Bonete MJ, Zaccai G.},
journal = {Extremophiles},
year = {2004},
doi = {10.1007/s00792-004-0398-z},
pmid = {15221656}
}
@article{lin411605,
title = {Sequential 2'-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA.},
author = {Singh SK, Gurha P, Tran EJ, Maxwell ES, Gupta R.},
journal = {J Biol Chem},
year = {2004},
doi = {10.1074/jbc.m408868200},
pmid = {15347671}
}
@article{lin411507,
title = {In the Archaea Haloferax volcanii, membrane protein biogenesis and protein synthesis rates are affected by decreased ribosomal binding to the translocon.},
author = {Ring G, Eichler J.},
journal = {J Biol Chem},
year = {2004},
doi = {10.1074/jbc.m410590200},
pmid = {15475349}
}
@article{lin411549,
title = {An alternative pathway for reduced folate biosynthesis in bacteria and halophilic archaea.},
author = {Levin I, Giladi M, Altman-Price N, Ortenberg R, Mevarech M.},
journal = {Mol Microbiol},
year = {2004},
doi = {10.1111/j.1365-2958.2004.04339.x},
pmid = {15554970}
}
@article{lin411486,
title = {Improvement of two-dimensional gel electrophoresis proteome maps of the haloarchaeon Haloferax volcanii.},
author = {Karadzic IM, Maupin-Furlow JA.},
journal = {Proteomics},
year = {2005},
doi = {10.1002/pmic.200400950},
pmid = {15627962}
}
@article{lin411686,
title = {In vivo analyses of constitutive and regulated promoters in halophilic archaea.},
author = {Gregor D, Pfeifer F.},
journal = {Microbiology (Reading)},
year = {2005},
doi = {10.1099/mic.0.27541-0},
pmid = {15632422}
}
@article{lin411752,
title = {Recombinant production of Zymomonas mobilis pyruvate decarboxylase in the haloarchaeon Haloferax volcanii.},
author = {Kaczowka SJ, Reuter CJ, Talarico LA, Maupin-Furlow JA.},
journal = {Archaea},
year = {2005},
doi = {10.1155/2005/325738},
pmid = {15876566}
}
@article{lin411672,
title = {Expression of acetylcholine (ACh) and ACh-synthesizing activity in Archaea.},
author = {Yamada T, Fujii T, Kanai T, Amo T, Imanaka T, Nishimasu H, Wakagi T, Shoun H, Kamekura M, Kamagata Y, Kato T, Kawashima K.},
journal = {Life Sci},
year = {2005},
doi = {10.1016/j.lfs.2005.01.026},
pmid = {15936779}
}
@article{lin411561,
title = {From replication to cultivation: hot news from Haloarchaea.},
author = {Soppa J.},
journal = {Curr Opin Microbiol},
year = {2005},
doi = {10.1016/j.mib.2005.10.012},
pmid = {16253545}
}
@article{lin411479,
title = {Complete reversal of coenzyme specificity of isocitrate dehydrogenase from Haloferax volcanii.},
author = {Rodriguez-Arnedo A, Camacho M, Llorca F, Bonete MJ.},
journal = {Protein J},
year = {2005},
doi = {10.1007/s10930-005-6746-8},
pmid = {16284723}
}
@article{lin411730,
title = {Genetic and biochemical analysis of the twin-arginine translocation pathway in halophilic archaea.},
author = {Dilks K, Gimenez MI, Pohlschroder M.},
journal = {J Bacteriol},
year = {2005},
doi = {10.1128/jb.187.23.8104-8113.2005},
pmid = {16291683}
}
@article{lin162885,
title = {Detection and cultivation of soil verrucomicrobia.},
author = {Sangwan P, Kovac S, Davis KE, Sait M, Janssen PH.},
journal = {Appl Environ Microbiol},
year = {2005},
doi = {10.1128/aem.71.12.8402-8410.2005},
pmid = {16332828}
}
@article{lin411460,
title = {Haloferax volcanii PitA: an example of functional interaction between the Pfam chlorite dismutase and antibiotic biosynthesis monooxygenase families?},
author = {Bab-Dinitz E, Shmuely H, Maupin-Furlow J, Eichler J, Shaanan B.},
journal = {Bioinformatics},
year = {2006},
doi = {10.1093/bioinformatics/btk043},
pmid = {16403788}
}
@article{lin411471,
title = {ATP- and NAD+-dependent DNA ligases share an essential function in the halophilic archaeon Haloferax volcanii.},
author = {Zhao A, Gray FC, MacNeill SA.},
journal = {Mol Microbiol},
year = {2006},
doi = {10.1111/j.1365-2958.2005.04975.x},
pmid = {16420348}
}
@article{lin411660,
title = {Translation initiation with GUC codon in the archaeon Halobacterium salinarum: implications for translation of leaderless mRNA and strict correlation between translation initiation and presence of mRNA.},
author = {Srinivasan G, Krebs MP, RajBhandary UL.},
journal = {Mol Microbiol},
year = {2006},
doi = {10.1111/j.1365-2958.2005.04992.x},
pmid = {16420368}
}
@article{lin411492,
title = {Trizol-based method for sample preparation and isoelectric focusing of halophilic proteins.},
author = {Kirkland PA, Busby J, Stevens S, Maupin-Furlow JA.},
journal = {Anal Biochem},
year = {2006},
doi = {10.1016/j.ab.2006.01.017},
pmid = {16473320}
}
@article{lin411569,
title = {From genomes to function: haloarchaea as model organisms.},
author = {Soppa J.},
journal = {Microbiology (Reading)},
year = {2006},
doi = {10.1099/mic.0.28504-0},
pmid = {16514139}
}
@article{lin411532,
title = {Interactions of RadB, a DNA repair protein in archaea, with DNA and ATP.},
author = {Guy CP, Haldenby S, Brindley A, Walsh DA, Briggs GS, Warren MJ, Allers T, Bolt EL.},
journal = {J Mol Biol},
year = {2006},
doi = {10.1016/j.jmb.2006.02.010},
pmid = {16516228}
}
@article{lin162887,
title = {Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil.},
author = {Sait M, Davis KE, Janssen PH.},
journal = {Appl Environ Microbiol},
year = {2006},
doi = {10.1128/aem.72.3.1852-1857.2006},
pmid = {16517631}
}
@article{lin162881,
title = {Viral contribution to dissolved DNA in the marine environment as determined by differential centrifugation and kingdom probing.},
author = {Jiang SC, Paul JH.},
journal = {Appl Environ Microbiol},
year = {1995},
doi = {10.1128/aem.61.1.317-325.1995},
pmid = {16534913}
}
@article{lin411489,
title = {[Analysis of promoter sequence and its activity of homologues gene rad25 of eukaryotes from halophilic archaea].},
author = {Zhu JY, Hu YH, Liu J, Huang YP, Shen P.},
journal = {Wei Sheng Wu Xue Bao},
year = {2006},
pmid = {16736575}
}
@article{lin411467,
title = {Protein N-glycosylation in Archaea: defining Haloferax volcanii genes involved in S-layer glycoprotein glycosylation.},
author = {Abu-Qarn M, Eichler J.},
journal = {Mol Microbiol},
year = {2006},
doi = {10.1111/j.1365-2958.2006.05252.x},
pmid = {16762024}
}
@article{lin411469,
title = {All three chaperonin genes in the archaeon Haloferax volcanii are individually dispensable.},
author = {Kapatai G, Large A, Benesch JL, Robinson CV, Carrascosa JL, Valpuesta JM, Gowrinathan P, Lund PA.},
journal = {Mol Microbiol},
year = {2006},
doi = {10.1111/j.1365-2958.2006.05324.x},
pmid = {16968228}
}
@article{lin411451,
title = {HMG-CoA reductase is regulated by salinity at the level of transcription in Haloferax volcanii.},
author = {Bidle KA, Hanson TE, Howell K, Nannen J.},
journal = {Extremophiles},
year = {2007},
doi = {10.1007/s00792-006-0008-3},
pmid = {16969709}
}
@article{lin411562,
title = {The lysogenic region of virus phiCh1: identification of a repressor-operator system and determination of its activity in halophilic Archaea.},
author = {Iro M, Klein R, Galos B, Baranyi U, Rossler N, Witte A.},
journal = {Extremophiles},
year = {2007},
doi = {10.1007/s00792-006-0040-3},
pmid = {17123129}
}
@article{lin411793,
title = {Biochemical characterisation of LigN, an NAD+-dependent DNA ligase from the halophilic euryarchaeon Haloferax volcanii that displays maximal in vitro activity at high salt concentrations.},
author = {Poidevin L, MacNeill SA.},
journal = {BMC Mol Biol},
year = {2006},
doi = {10.1186/1471-2199-7-44},
pmid = {17132163}
}
@article{lin411425,
title = {Protein biogenesis in Archaea: addressing translation initiation using an in vitro protein synthesis system for Haloferax volcanii.},
author = {Ring G, Londei P, Eichler J.},
journal = {FEMS Microbiol Lett},
year = {2007},
doi = {10.1111/j.1574-6968.2007.00649.x},
pmid = {17286573}
}
@article{lin411599,
title = {GvpD-induced breakdown of the transcriptional activator GvpE of halophilic archaea requires a functional p-loop and an arginine-rich region of GvpD.},
author = {Scheuch S, Pfeifer F.},
journal = {Microbiology (Reading)},
year = {2007},
doi = {10.1099/mic.0.2006/004499-0},
pmid = {17379705}
}
@article{lin411414,
title = {The 2-oxoacid dehydrogenase multienzyme complex of Haloferax volcanii.},
author = {Al-Mailem DM, Hough DW, Danson MJ.},
journal = {Extremophiles},
year = {2008},
doi = {10.1007/s00792-007-0091-0},
pmid = {17571210}
}
@article{lin411431,
title = {Effect of proteasome inhibitor clasto-lactacystin-beta-lactone on the proteome of the haloarchaeon Haloferax volcanii.},
author = {Kirkland PA, Reuter CJ, Maupin-Furlow JA.},
journal = {Microbiology (Reading)},
year = {2007},
doi = {10.1099/mic.0.2007/005769-0},
pmid = {17600071}
}
@article{lin411644,
title = {Structure in an extreme environment: NMR at high salt.},
author = {Binbuga B, Boroujerdi AF, Young JK.},
journal = {Protein Sci},
year = {2007},
doi = {10.1110/ps.072950407},
pmid = {17656587}
}
@article{lin411438,
title = {Transcriptional linkage of Haloferax volcanii proteasomal genes with non-proteasomal gene neighbours including RNase P, MOSC domain and SAM-methyltransferase homologues.},
author = {Gil MA, Sherwood KE, Maupin-Furlow JA.},
journal = {Microbiology (Reading)},
year = {2007},
doi = {10.1099/mic.0.2007/008177-0},
pmid = {17768244}
}
@article{lin411419,
title = {Three 2-oxoacid dehydrogenase operons in Haloferax volcanii: expression, deletion mutants and evolution.},
author = {van Ooyen J, Soppa J.},
journal = {Microbiology (Reading)},
year = {2007},
doi = {10.1099/mic.0.2007/008508-0},
pmid = {17906130}
}
@article{lin411412,
title = {Characterization of a tightly controlled promoter of the halophilic archaeon Haloferax volcanii and its use in the analysis of the essential cct1 gene.},
author = {Large A, Stamme C, Lange C, Duan Z, Allers T, Soppa J, Lund PA.},
journal = {Mol Microbiol},
year = {2007},
doi = {10.1111/j.1365-2958.2007.05980.x},
pmid = {17973910}
}
@article{lin411525,
title = {The heterodimeric primase from the euryarchaeon Pyrococcus abyssi: a multifunctional enzyme for initiation and repair?},
author = {Le Breton M, Henneke G, Norais C, Flament D, Myllykallio H, Querellou J, Raffin JP.},
journal = {J Mol Biol},
year = {2007},
doi = {10.1016/j.jmb.2007.10.015},
pmid = {17991487}
}
@article{lin411418,
title = {Haloferax volcanii AglB and AglD are involved in N-glycosylation of the S-layer glycoprotein and proper assembly of the surface layer.},
author = {Abu-Qarn M, Yurist-Doutsch S, Giordano A, Trauner A, Morris HR, Hitchen P, Medalia O, Dell A, Eichler J.},
journal = {J Mol Biol},
year = {2007},
doi = {10.1016/j.jmb.2007.10.042},
pmid = {17996897}
}
@article{lin411406,
title = {Haloferax volcanii twin-arginine translocation substates include secreted soluble, C-terminally anchored and lipoproteins.},
author = {Gimenez MI, Dilks K, Pohlschroder M.},
journal = {Mol Microbiol},
year = {2007},
doi = {10.1111/j.1365-2958.2007.06034.x},
pmid = {18045386}
}
@article{lin411411,
title = {Kinetic folding of Haloferax volcanii and Escherichia coli dihydrofolate reductases: haloadaptation by unfolded state destabilization at high ionic strength.},
author = {Gloss LM, Topping TB, Binder AK, Lohman JR.},
journal = {J Mol Biol},
year = {2008},
doi = {10.1016/j.jmb.2007.12.056},
pmid = {18207162}
}
@article{lin411410,
title = {Glucose inhibits the formation of gas vesicles in Haloferax volcanii transformants.},
author = {Hechler T, Frech M, Pfeifer F.},
journal = {Environ Microbiol},
year = {2008},
doi = {10.1111/j.1462-2920.2007.01426.x},
pmid = {18211264}
}
@article{lin411762,
title = {Identification of AglE, a second glycosyltransferase involved in N glycosylation of the Haloferax volcanii S-layer glycoprotein.},
author = {Abu-Qarn M, Giordano A, Battaglia F, Trauner A, Hitchen PG, Morris HR, Dell A, Eichler J.},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/jb.00056-08},
pmid = {18310347}
}
@article{lin411443,
title = {Two archaeal tRNase Z enzymes: similar but different.},
author = {Spath B, Schubert S, Lieberoth A, Settele F, Schutz S, Fischer S, Marchfelder A.},
journal = {Arch Microbiol},
year = {2008},
doi = {10.1007/s00203-008-0368-4},
pmid = {18437358}
}
@article{lin411712,
title = {Proteomic analysis of Haloferax volcanii reveals salinity-mediated regulation of the stress response protein PspA.},
author = {Bidle KA, Kirkland PA, Nannen JL, Maupin-Furlow JA.},
journal = {Microbiology (Reading)},
year = {2008},
doi = {10.1099/mic.0.2007/015586-0},
pmid = {18451052}
}
@article{lin411384,
title = {Characterization of a Haloferax volcanii member of the enolase superfamily: deletion mutant construction, expression analysis, and transcriptome comparison.},
author = {Dambeck M, Soppa J.},
journal = {Arch Microbiol},
year = {2008},
doi = {10.1007/s00203-008-0379-1},
pmid = {18493744}
}
@article{lin411499,
title = {Genomics and functional genomics with haloarchaea.},
author = {Soppa J, Baumann A, Brenneis M, Dambeck M, Hering O, Lange C.},
journal = {Arch Microbiol},
year = {2008},
doi = {10.1007/s00203-008-0376-4},
pmid = {18493745}
}
@article{lin411373,
title = {Optimized generation of vectors for the construction of Haloferax volcanii deletion mutants.},
author = {Hammelmann M, Soppa J.},
journal = {J Microbiol Methods},
year = {2008},
doi = {10.1016/j.mimet.2008.05.029},
pmid = {18582505}
}
@article{lin411394,
title = {AglF, aglG and aglI, novel members of a gene island involved in the N-glycosylation of the Haloferax volcanii S-layer glycoprotein.},
author = {Yurist-Doutsch S, Abu-Qarn M, Battaglia F, Morris HR, Hitchen PG, Dell A, Eichler J.},
journal = {Mol Microbiol},
year = {2008},
doi = {10.1111/j.1365-2958.2008.06352.x},
pmid = {18631242}
}
@article{lin411639,
title = {Box C/D RNA-guided 2'-O methylations and the intron of tRNATrp are not essential for the viability of Haloferax volcanii.},
author = {Joardar A, Gurha P, Skariah G, Gupta R.},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/jb.00820-08},
pmid = {18757532}
}
@article{lin411710,
title = {Shotgun proteomics of the haloarchaeon Haloferax volcanii.},
author = {Kirkland PA, Humbard MA, Daniels CJ, Maupin-Furlow JA.},
journal = {J Proteome Res},
year = {2008},
doi = {10.1021/pr800517a},
pmid = {18816081}
}
@article{lin411375,
title = {NMR-derived folate-bound structure of dihydrofolate reductase 1 from the halophile Haloferax volcanii.},
author = {Boroujerdi AF, Young JK.},
journal = {Biopolymers},
year = {2009},
doi = {10.1002/bip.21096},
pmid = {18825778}
}
@article{lin411757,
title = {Defining the topology of the N-glycosylation pathway in the halophilic archaeon Haloferax volcanii.},
author = {Plavner N, Eichler J.},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/jb.01200-08},
pmid = {18931126}
}
@article{lin411416,
title = {Anaerobiosis inhibits gas vesicle formation in halophilic Archaea.},
author = {Hechler T, Pfeifer F.},
journal = {Mol Microbiol},
year = {2009},
doi = {10.1111/j.1365-2958.2008.06517.x},
pmid = {19007418}
}
@article{lin411534,
title = {Lipids of the ultra-thin square halophilic archaeon Haloquadratum walsbyi.},
author = {Lobasso S, Lopalco P, Mascolo G, Corcelli A.},
journal = {Archaea},
year = {2008},
doi = {10.1155/2008/870191},
pmid = {19054744}
}
@article{lin411677,
title = {Genetic evidence for the importance of protein acetylation and protein deacetylation in the halophilic archaeon Haloferax volcanii.},
author = {Altman-Price N, Mevarech M.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.01252-08},
pmid = {19114494}
}
@article{lin411490,
title = {Chaperones and protein folding in the archaea.},
author = {Large AT, Goldberg MD, Lund PA.},
journal = {Biochem Soc Trans},
year = {2009},
doi = {10.1042/bst0370046},
pmid = {19143600}
}
@article{lin411459,
title = {The haloarchaeal chromosome replication machinery.},
author = {MacNeill SA.},
journal = {Biochem Soc Trans},
year = {2009},
doi = {10.1042/bst0370108},
pmid = {19143612}
}
@article{lin411372,
title = {Small RNAs of the halophilic archaeon Haloferax volcanii.},
author = {Soppa J, Straub J, Brenneis M, Jellen-Ritter A, Heyer R, Fischer S, Granzow M, Voss B, Hess WR, Tjaden B, Marchfelder A.},
journal = {Biochem Soc Trans},
year = {2009},
doi = {10.1042/bst0370133},
pmid = {19143617}
}
@article{lin411719,
title = {Manual annotation, transcriptional analysis, and protein expression studies reveal novel genes in the agl cluster responsible for N glycosylation in the halophilic archaeon Haloferax volcanii.},
author = {Yurist-Doutsch S, Eichler J.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.01838-08},
pmid = {19251857}
}
@article{lin411513,
title = {Stabilization of an archaeal DNA-sliding clamp protein, PCNA, by proteasome-activating nucleotidase gene knockout in Haloferax volcanii.},
author = {Kirkland PA, Maupin-Furlow JA.},
journal = {FEMS Microbiol Lett},
year = {2009},
doi = {10.1111/j.1574-6968.2009.01547.x},
pmid = {19284414}
}
@article{lin411393,
title = {Small RNAs in haloarchaea: identification, differential expression and biological function.},
author = {Straub J, Brenneis M, Jellen-Ritter A, Heyer R, Soppa J, Marchfelder A.},
journal = {RNA Biol},
year = {2009},
doi = {10.4161/rna.6.3.8357},
pmid = {19333006}
}
@article{lin411729,
title = {Glycerol-mediated repression of glucose metabolism and glycerol kinase as the sole route of glycerol catabolism in the haloarchaeon Haloferax volcanii.},
author = {Sherwood KE, Cano DJ, Maupin-Furlow JA.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00131-09},
pmid = {19411322}
}
@article{lin411657,
title = {A Gateway platform for functional genomics in Haloferax volcanii: deletion of three tRNA modification genes.},
author = {El Yacoubi B, Phillips G, Blaby IK, Haas CE, Cruz Y, Greenberg J, de Crecy-Lagard V.},
journal = {Archaea},
year = {2009},
doi = {10.1155/2009/428489},
pmid = {19478918}
}
@article{lin411546,
title = {Identification and characterization of gshA, a gene encoding the glutamate-cysteine ligase in the halophilic archaeon Haloferax volcanii.},
author = {Malki L, Yanku M, Borovok I, Cohen G, Mevarech M, Aharonowitz Y.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00297-09},
pmid = {19525351}
}
@article{lin411733,
title = {Mre11-Rad50 promotes rapid repair of DNA damage in the polyploid archaeon Haloferax volcanii by restraining homologous recombination.},
author = {Delmas S, Shunburne L, Ngo HP, Allers T.},
journal = {PLoS Genet},
year = {2009},
doi = {10.1371/journal.pgen.1000552},
pmid = {19593371}
}
@article{lin411681,
title = {Identification of the polyhydroxyalkanoate (PHA)-specific acetoacetyl coenzyme A reductase among multiple FabG paralogs in Haloarcula hispanica and reconstruction of the PHA biosynthetic pathway in Haloferax volcanii.},
author = {Han J, Lu Q, Zhou L, Liu H, Xiang H.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.00938-09},
pmid = {19648370}
}
@article{lin411667,
title = {Structural insights into the adaptation of proliferating cell nuclear antigen (PCNA) from Haloferax volcanii to a high-salt environment.},
author = {Morgunova E, Gray FC, Macneill SA, Ladenstein R.},
journal = {Acta Crystallogr D Biol Crystallogr},
year = {2009},
doi = {10.1107/s0907444909029321},
pmid = {19770505}
}
@article{lin411659,
title = {Hydrophobic carboxy-terminal residues dramatically reduce protein levels in the haloarchaeon Haloferax volcanii.},
author = {Reuter CJ, Uthandi S, Puentes JA, Maupin-Furlow JA.},
journal = {Microbiology (Reading)},
year = {2010},
doi = {10.1099/mic.0.032995-0},
pmid = {19850616}
}
@article{lin411349,
title = {A 2-oxoacid dehydrogenase complex of Haloferax volcanii is essential for growth on isoleucine but not on other branched-chain amino acids.},
author = {Sisignano M, Morbitzer D, Gatgens J, Oldiges M, Soppa J.},
journal = {Microbiology (Reading)},
year = {2010},
doi = {10.1099/mic.0.033449-0},
pmid = {19910413}
}
@article{lin411786,
title = {LccA, an archaeal laccase secreted as a highly stable glycoprotein into the extracellular medium by Haloferax volcanii.},
author = {Uthandi S, Saad B, Humbard MA, Maupin-Furlow JA.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.01757-09},
pmid = {19966030}
}
@article{lin411458,
title = {Interaction of transcription activator GvpE with TATA-box-binding proteins of Halobacterium salinarum.},
author = {Teufel K, Pfeifer F.},
journal = {Arch Microbiol},
year = {2010},
doi = {10.1007/s00203-009-0537-0},
pmid = {20049418}
}
@article{lin411650,
title = {Improved strains and plasmid vectors for conditional overexpression of His-tagged proteins in Haloferax volcanii.},
author = {Allers T, Barak S, Liddell S, Wardell K, Mevarech M.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.02670-09},
pmid = {20097827}
}
@article{lin411385,
title = {Tantalizing evidence for caspase-like protein expression and activity in the cellular stress response of Archaea.},
author = {Bidle KA, Haramaty L, Baggett N, Nannen J, Bidle KD.},
journal = {Environ Microbiol},
year = {2010},
doi = {10.1111/j.1462-2920.2010.02157.x},
pmid = {20132282}
}
@article{lin411341,
title = {AglP is a S-adenosyl-L-methionine-dependent methyltransferase that participates in the N-glycosylation pathway of Haloferax volcanii.},
author = {Magidovich H, Yurist-Doutsch S, Konrad Z, Ventura VV, Dell A, Hitchen PG, Eichler J.},
journal = {Mol Microbiol},
year = {2010},
doi = {10.1111/j.1365-2958.2010.07090.x},
pmid = {20149102}
}
@article{lin411437,
title = {Discovery of a putative acetoin dehydrogenase complex in the hyperthermophilic archaeon Sulfolobus solfataricus.},
author = {Payne KA, Hough DW, Danson MJ.},
journal = {FEBS Lett},
year = {2010},
doi = {10.1016/j.febslet.2010.02.037},
pmid = {20171216}
}
@article{lin411353,
title = {SufS protein from Haloferax volcanii involved in Fe-S cluster assembly in haloarchaea.},
author = {Zafrilla B, Martinez-Espinosa RM, Esclapez J, Perez-Pomares F, Bonete MJ.},
journal = {Biochim Biophys Acta},
year = {2010},
doi = {10.1016/j.bbapap.2010.03.001},
pmid = {20226884}
}
@article{lin162871,
title = {The complete genome sequence of Haloferax volcanii DS2, a model archaeon.},
author = {Hartman AL, Norais C, Badger JH, Delmas S, Haldenby S, Madupu R, Robinson J, Khouri H, Ren Q, Lowe TM, Maupin-Furlow J, Pohlschroder M, Daniels C, Pfeiffer F, Allers T, Eisen JA.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0009605},
pmid = {20333302}
}
@article{lin14981,
title = {Identification of polyhydroxyalkanoates in Halococcus and other haloarchaeal species.},
author = {Legat A, Gruber C, Zangger K, Wanner G, Stan-Lotter H},
journal = {Appl Microbiol Biotechnol},
year = {2010},
doi = {10.1007/s00253-010-2611-6},
pmid = {20437233}
}
@article{lin411319,
title = {Different glycosyltransferases are involved in lipid glycosylation and protein N-glycosylation in the halophilic archaeon Haloferax volcanii.},
author = {Naparstek S, Vinagradov E, Eichler J.},
journal = {Arch Microbiol},
year = {2010},
doi = {10.1007/s00203-010-0581-9},
pmid = {20458469}
}
@article{lin411340,
title = {N-glycosylation in Archaea: on the coordinated actions of Haloferax volcanii AglF and AglM.},
author = {Yurist-Doutsch S, Magidovich H, Ventura VV, Hitchen PG, Dell A, Eichler J.},
journal = {Mol Microbiol},
year = {2010},
doi = {10.1111/j.1365-2958.2009.07045.x},
pmid = {20487296}
}
@article{lin411602,
title = {Identification of residues important for the activity of Haloferax volcanii AglD, a component of the archaeal N-glycosylation pathway.},
author = {Kaminski L, Eichler J.},
journal = {Archaea},
year = {2010},
doi = {10.1155/2010/315108},
pmid = {20585355}
}
@article{lin411617,
title = {Towards glycoengineering in archaea: replacement of Haloferax volcanii AglD with homologous glycosyltransferases from other halophilic archaea.},
author = {Calo D, Eilam Y, Lichtenstein RG, Eichler J.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.00681-10},
pmid = {20601508}
}
@article{lin411321,
title = {The archaeal Xpf/Mus81/FANCM homolog Hef and the Holliday junction resolvase Hjc define alternative pathways that are essential for cell viability in Haloferax volcanii.},
author = {Lestini R, Duan Z, Allers T.},
journal = {DNA Repair (Amst)},
year = {2010},
doi = {10.1016/j.dnarep.2010.06.012},
pmid = {20667794}
}
@article{lin411678,
title = {Phosphorylation and methylation of proteasomal proteins of the haloarcheon Haloferax volcanii.},
author = {Humbard MA, Reuter CJ, Zuobi-Hasona K, Zhou G, Maupin-Furlow JA.},
journal = {Archaea},
year = {2010},
doi = {10.1155/2010/481725},
pmid = {20671954}
}
@article{lin411620,
title = {Archaea signal recognition particle shows the way.},
author = {Zwieb C, Bhuiyan S.},
journal = {Archaea},
year = {2010},
doi = {10.1155/2010/485051},
pmid = {20672053}
}
@article{lin411610,
title = {AglJ adds the first sugar of the N-linked pentasaccharide decorating the Haloferax volcanii S-layer glycoprotein.},
author = {Kaminski L, Abu-Qarn M, Guan Z, Naparstek S, Ventura VV, Raetz CR, Hitchen PG, Dell A, Eichler J.},
journal = {J Bacteriol},
year = {2010},
doi = {10.1128/jb.00705-10},
pmid = {20802039}
}
@article{lin411705,
title = {GlpR represses fructose and glucose metabolic enzymes at the level of transcription in the haloarchaeon Haloferax volcanii.},
author = {Rawls KS, Yacovone SK, Maupin-Furlow JA.},
journal = {J Bacteriol},
year = {2010},
doi = {10.1128/jb.00827-10},
pmid = {20935102}
}
@article{lin411704,
title = {Archaeal ubiquitin-like proteins: functional versatility and putative ancestral involvement in tRNA modification revealed by comparative genomic analysis.},
author = {Makarova KS, Koonin EV.},
journal = {Archaea},
year = {2010},
doi = {10.1155/2010/710303},
pmid = {20936112}
}
@article{lin411430,
title = {Peptide synthesis catalysed by a haloalkaliphilic serine protease from the archaeon Natrialba magadii (Nep).},
author = {Ruiz DM, Iannuci NB, Cascone O, De Castro RE.},
journal = {Lett Appl Microbiol},
year = {2010},
doi = {10.1111/j.1472-765x.2010.02955.x},
pmid = {21039670}
}
@article{lin411698,
title = {Distinct glycan-charged phosphodolichol carriers are required for the assembly of the pentasaccharide N-linked to the Haloferax volcanii S-layer glycoprotein.},
author = {Guan Z, Naparstek S, Kaminski L, Konrad Z, Eichler J.},
journal = {Mol Microbiol},
year = {2010},
doi = {10.1111/j.1365-2958.2010.07405.x},
pmid = {21091511}
}
@article{lin411415,
title = {The information transfer system of halophilic archaea.},
author = {Capes MD, Coker JA, Gessler R, Grinblat-Huse V, DasSarma SL, Jacob CG, Kim JM, DasSarma P, DasSarma S.},
journal = {Plasmid},
year = {2011},
doi = {10.1016/j.plasmid.2010.11.005},
pmid = {21094181}
}
@article{lin411314,
title = {Crystal structure of ubiquitin-like small archaeal modifier protein 1 (SAMP1) from Haloferax volcanii.},
author = {Jeong YJ, Jeong BC, Song HK.},
journal = {Biochem Biophys Res Commun},
year = {2011},
doi = {10.1016/j.bbrc.2011.01.004},
pmid = {21216237}
}
@article{lin411618,
title = {Towards a systems approach in the genetic analysis of archaea: Accelerating mutant construction and phenotypic analysis in Haloferax volcanii.},
author = {Blaby IK, Phillips G, Blaby-Haas CE, Gulig KS, El Yacoubi B, de Crecy-Lagard V.},
journal = {Archaea},
year = {2010},
doi = {10.1155/2010/426239},
pmid = {21234384}
}
@article{lin411307,
title = {Regulatory RNAs in Haloferax volcanii.},
author = {Fischer S, Benz J, Spath B, Jellen-Ritter A, Heyer R, Dorr M, Maier LK, Menzel-Hobeck C, Lehr M, Jantzer K, Babski J, Soppa J, Marchfelder A.},
journal = {Biochem Soc Trans},
year = {2011},
doi = {10.1042/bst0390159},
pmid = {21265765}
}
@article{lin411502,
title = {In vivo characterization of the homing endonuclease within the polB gene in the halophilic archaeon Haloferax volcanii.},
author = {Naor A, Lazary R, Barzel A, Papke RT, Gophna U.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0015833},
pmid = {21283796}
}
@article{lin411420,
title = {Overexpression and purification of halophilic proteins in Haloferax volcanii.},
author = {Allers T.},
journal = {Bioeng Bugs},
year = {2010},
doi = {10.4161/bbug.1.4.11794},
pmid = {21327063}
}
@article{lin411294,
title = {Gene conversion results in the equalization of genome copies in the polyploid haloarchaeon Haloferax volcanii.},
author = {Lange C, Zerulla K, Breuert S, Soppa J.},
journal = {Mol Microbiol},
year = {2011},
doi = {10.1111/j.1365-2958.2011.07600.x},
pmid = {21338422}
}
@article{lin411563,
title = {Glyco-engineering in Archaea: differential N-glycosylation of the S-layer glycoprotein in a transformed Haloferax volcanii strain.},
author = {Calo D, Guan Z, Eichler J.},
journal = {Microb Biotechnol},
year = {2011},
doi = {10.1111/j.1751-7915.2011.00250.x},
pmid = {21338478}
}
@article{lin411697,
title = {E1- and ubiquitin-like proteins provide a direct link between protein conjugation and sulfur transfer in archaea.},
author = {Miranda HV, Nembhard N, Su D, Hepowit N, Krause DJ, Pritz JR, Phillips C, Soll D, Maupin-Furlow JA.},
journal = {Proc Natl Acad Sci U S A},
year = {2011},
doi = {10.1073/pnas.1018151108},
pmid = {21368171}
}
@article{lin411379,
title = {Biosynthesis and function of tRNA modifications in Archaea.},
author = {Phillips G, de Crecy-Lagard V.},
journal = {Curr Opin Microbiol},
year = {2011},
doi = {10.1016/j.mib.2011.03.001},
pmid = {21470902}
}
@article{lin411788,
title = {A 5-formyltetrahydrofolate cycloligase paralog from all domains of life: comparative genomic and experimental evidence for a cryptic role in thiamin metabolism.},
author = {Pribat A, Blaby IK, Lara-Nunez A, Jeanguenin L, Fouquet R, Frelin O, Gregory JF, Philmus B, Begley TP, de Crecy-Lagard V, Hanson AD.},
journal = {Funct Integr Genomics},
year = {2011},
doi = {10.1007/s10142-011-0224-5},
pmid = {21538139}
}
@article{lin162860,
title = {Crystal structures of a halophilic archaeal malate synthase from Haloferax volcanii and comparisons with isoforms A and G.},
author = {Bracken CD, Neighbor AM, Lamlenn KK, Thomas GC, Schubert HL, Whitby FG, Howard BR.},
journal = {BMC Struct Biol},
year = {2011},
doi = {10.1186/1472-6807-11-23},
pmid = {21569248}
}
@article{lin411647,
title = {2'-O-methylation of the wobble residue of elongator pre-tRNA(Met) in Haloferax volcanii is guided by a box C/D RNA containing unique features.},
author = {Joardar A, Malliahgari SR, Skariah G, Gupta R.},
journal = {RNA Biol},
year = {2011},
doi = {10.4161/rna.8.5.16015},
pmid = {21654217}
}
@article{lin411279,
title = {Phenotyping in the archaea: optimization of growth parameters and analysis of mutants of Haloferax volcanii.},
author = {Jantzer K, Zerulla K, Soppa J.},
journal = {FEMS Microbiol Lett},
year = {2011},
doi = {10.1111/j.1574-6968.2011.02341.x},
pmid = {21692831}
}
@article{lin411296,
title = {Bioinformatic prediction and experimental verification of sRNAs in the haloarchaeon Haloferax volcanii.},
author = {Babski J, Tjaden B, Voss B, Jellen-Ritter A, Marchfelder A, Hess WR, Soppa J.},
journal = {RNA Biol},
year = {2011},
doi = {10.4161/rna.8.5.16039},
pmid = {21712649}
}
@article{lin411732,
title = {Activity and transcriptional regulation of bacterial protein-like glycerol-3-phosphate dehydrogenase of the haloarchaea in Haloferax volcanii.},
author = {Rawls KS, Martin JH, Maupin-Furlow JA.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.00276-11},
pmid = {21725010}
}
@article{lin411539,
title = {Different routes to the same ending: comparing the N-glycosylation processes of Haloferax volcanii and Haloarcula marismortui, two halophilic archaea from the Dead Sea.},
author = {Calo D, Guan Z, Naparstek S, Eichler J.},
journal = {Mol Microbiol},
year = {2011},
doi = {10.1111/j.1365-2958.2011.07781.x},
pmid = {21815949}
}
@article{lin411312,
title = {N-linked glycosylation in Archaea: two paths to the same glycan.},
author = {Guerry P.},
journal = {Mol Microbiol},
year = {2011},
doi = {10.1111/j.1365-2958.2011.07782.x},
pmid = {21848800}
}
@article{lin411371,
title = {Archaea-based microbial fuel cell operating at high ionic strength conditions.},
author = {Abrevaya XC, Sacco N, Mauas PJ, Corton E.},
journal = {Extremophiles},
year = {2011},
doi = {10.1007/s00792-011-0394-z},
pmid = {21894491}
}
@article{lin411380,
title = {Characterization of alcohol dehydrogenase (ADH12) from Haloarcula marismortui, an extreme halophile from the Dead Sea.},
author = {Timpson LM, Alsafadi D, Mac Donnchadha C, Liddell S, Sharkey MA, Paradisi F.},
journal = {Extremophiles},
year = {2012},
doi = {10.1007/s00792-011-0405-0},
pmid = {22015539}
}
@article{lin411541,
title = {Protein glycosylation as an adaptive response in Archaea: growth at different salt concentrations leads to alterations in Haloferax volcanii S-layer glycoprotein N-glycosylation.},
author = {Guan Z, Naparstek S, Calo D, Eichler J.},
journal = {Environ Microbiol},
year = {2012},
doi = {10.1111/j.1462-2920.2011.02625.x},
pmid = {22029420}
}
@article{lin411281,
title = {Comparative survival analysis of Deinococcus radiodurans and the haloarchaea Natrialba magadii and Haloferax volcanii exposed to vacuum ultraviolet irradiation.},
author = {Abrevaya XC, Paulino-Lima IG, Galante D, Rodrigues F, Mauas PJ, Corton E, Lage Cde A.},
journal = {Astrobiology},
year = {2011},
doi = {10.1089/ast.2011.0607},
pmid = {22165956}
}
@article{lin411272,
title = {tRNA-like elements in Haloferax volcanii.},
author = {Holzle A, Stoll B, Schnattinger T, Schoning U, Tjaden B, Marchfelder A.},
journal = {Biochimie},
year = {2012},
doi = {10.1016/j.biochi.2011.12.002},
pmid = {22178322}
}
@article{lin411760,
title = {Functional genomic and advanced genetic studies reveal novel insights into the metabolism, regulation, and biology of Haloferax volcanii.},
author = {Soppa J.},
journal = {Archaea},
year = {2011},
doi = {10.1155/2011/602408},
pmid = {22190865}
}
@article{lin411676,
title = {The core and unique proteins of haloarchaea.},
author = {Capes MD, DasSarma P, DasSarma S.},
journal = {BMC Genomics},
year = {2012},
doi = {10.1186/1471-2164-13-39},
pmid = {22272718}
}
@article{lin411595,
title = {Assigning a function to a conserved archaeal metallo-beta-lactamase from Haloferax volcanii.},
author = {Fischer S, John von Freyend S, Sabag-Daigle A, Daniels CJ, Allers T, Marchfelder A.},
journal = {Extremophiles},
year = {2012},
doi = {10.1007/s00792-012-0433-4},
pmid = {22350204}
}
@article{lin411674,
title = {Halophilic enzyme activation induced by salts.},
author = {Ortega G, Lain A, Tadeo X, Lopez-Mendez B, Castano D, Millet O.},
journal = {Sci Rep},
year = {2011},
doi = {10.1038/srep00006},
pmid = {22355525}
}
@article{lin411560,
title = {Fructose degradation in the haloarchaeon Haloferax volcanii involves a bacterial type phosphoenolpyruvate-dependent phosphotransferase system, fructose-1-phosphate kinase, and class II fructose-1,6-bisphosphate aldolase.},
author = {Pickl A, Johnsen U, Schonheit P.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.00200-12},
pmid = {22493022}
}
@article{lin411252,
title = {A comparison of two novel alcohol dehydrogenase enzymes (ADH1 and ADH2) from the extreme halophile Haloferax volcanii.},
author = {Timpson LM, Liliensiek AK, Alsafadi D, Cassidy J, Sharkey MA, Liddell S, Allers T, Paradisi F.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-012-4074-4},
pmid = {22526808}
}
@article{lin411356,
title = {Overexpression in a non-native halophilic host and biotechnological potential of NAD+-dependent glutamate dehydrogenase from Halobacterium salinarum strain NRC-36014.},
author = {Munawar N, Engel PC.},
journal = {Extremophiles},
year = {2012},
doi = {10.1007/s00792-012-0446-z},
pmid = {22527040}
}
@article{lin411782,
title = {Recombinogenic properties of Pyrococcus furiosus strain COM1 enable rapid selection of targeted mutants.},
author = {Farkas J, Stirrett K, Lipscomb GL, Nixon W, Scott RA, Adams MW, Adams MW, Westpheling J.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.00936-12},
pmid = {22544252}
}
@article{lin411496,
title = {Chemical cross-linking, mass spectrometry, and in silico modeling of proteasomal 20S core particles of the haloarchaeon Haloferax volcanii.},
author = {Karadzic I, Maupin-Furlow J, Humbard M, Prunetti L, Singh P, Goodlett DR.},
journal = {Proteomics},
year = {2012},
doi = {10.1002/pmic.201100260},
pmid = {22623373}
}
@article{lin411282,
title = {The only exoribonuclease present in Haloferax volcanii has an unique response to temperature changes.},
author = {Matos RG, Lopez-Vinas E, Gomez-Puertas P, Arraiano CM.},
journal = {Biochim Biophys Acta},
year = {2012},
doi = {10.1016/j.bbagen.2012.06.009},
pmid = {22705677}
}
@article{lin411646,
title = {Genetic and Biochemical Identification of a Novel Single-Stranded DNA-Binding Complex in Haloferax volcanii.},
author = {Stroud A, Liddell S, Allers T.},
journal = {Front Microbiol},
year = {2012},
doi = {10.3389/fmicb.2012.00224},
pmid = {22719738}
}
@article{lin411765,
title = {N-glycosylation of Haloferax volcanii flagellins requires known Agl proteins and is essential for biosynthesis of stable flagella.},
author = {Tripepi M, You J, Temel S, Onder O, Brisson D, Pohlschroder M.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.00731-12},
pmid = {22730124}
}
@article{lin411287,
title = {Low species barriers in halophilic archaea and the formation of recombinant hybrids.},
author = {Naor A, Lapierre P, Mevarech M, Papke RT, Gophna U.},
journal = {Curr Biol},
year = {2012},
doi = {10.1016/j.cub.2012.05.056},
pmid = {22748314}
}
@article{lin411536,
title = {AglR is required for addition of the final mannose residue of the N-linked glycan decorating the Haloferax volcanii S-layer glycoprotein.},
author = {Kaminski L, Guan Z, Abu-Qarn M, Konrad Z, Eichler J.},
journal = {Biochim Biophys Acta},
year = {2012},
doi = {10.1016/j.bbagen.2012.06.014},
pmid = {22750201}
}
@article{lin411689,
title = {Enhanced archaeal laccase production in recombinant Escherichia coli by modification of N-terminal propeptide and twin arginine translocation motifs.},
author = {Uthandi S, Prunetti L, De Vera IM, Fanucci GE, Angerhofer A, Maupin-Furlow JA.},
journal = {J Ind Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s10295-012-1152-7},
pmid = {22752793}
}
@article{lin411592,
title = {High throughput sequencing reveals a plethora of small RNAs including tRNA derived fragments in Haloferax volcanii.},
author = {Heyer R, Dorr M, Jellen-Ritter A, Spath B, Babski J, Jaschinski K, Soppa J, Marchfelder A.},
journal = {RNA Biol},
year = {2012},
doi = {10.4161/rna.20826},
pmid = {22767255}
}
@article{lin162875,
title = {An archaeal immune system can detect multiple protospacer adjacent motifs (PAMs) to target invader DNA.},
author = {Fischer S, Maier LK, Stoll B, Brendel J, Fischer E, Pfeiffer F, Dyall-Smith M, Marchfelder A.},
journal = {J Biol Chem},
year = {2012},
doi = {10.1074/jbc.m112.377002},
pmid = {22767603}
}
@article{lin411512,
title = {Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux.},
author = {Lynch EA, Langille MG, Darling A, Wilbanks EG, Haltiner C, Shao KS, Starr MO, Teiling C, Harkins TT, Edwards RA, Eisen JA, Facciotti MT.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0041389},
pmid = {22848480}
}
@article{lin411392,
title = {A genetic investigation of the KEOPS complex in halophilic Archaea.},
author = {Naor A, Thiaville PC, Altman-Price N, Cohen-Or I, Allers T, de Crecy-Lagard V, Gophna U.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0043013},
pmid = {22927945}
}
@article{lin411621,
title = {DNA binding in high salt: analysing the salt dependence of replication protein A3 from the halophile Haloferax volcanii.},
author = {Winter JA, Patoli B, Bunting KA.},
journal = {Archaea},
year = {2012},
doi = {10.1155/2012/719092},
pmid = {22973163}
}
@article{lin411289,
title = {A dual promoter region with overlapping activator sequences drives the expression of gas vesicle protein genes in haloarchaea.},
author = {Marschaus L, Pfeifer F.},
journal = {Microbiology (Reading)},
year = {2012},
doi = {10.1099/mic.0.060178-0},
pmid = {22997463}
}
@article{lin162872,
title = {Synthetic archaeosome vaccines containing triglycosylarchaeols can provide additive and long-lasting immune responses that are enhanced by archaetidylserine.},
author = {Sprott GD, Yeung A, Dicaire CJ, Yu SH, Whitfield DM.},
journal = {Archaea},
year = {2012},
doi = {10.1155/2012/513231},
pmid = {23055819}
}
@article{lin14980,
title = {Biofilm formation by haloarchaea.},
author = {Frols S, Dyall-Smith M, Pfeifer F},
journal = {Environ Microbiol},
year = {2012},
doi = {10.1111/j.1462-2920.2012.02895.x},
pmid = {23057712}
}
@article{lin411531,
title = {AglS, a novel component of the Haloferax volcanii N-glycosylation pathway, is a dolichol phosphate-mannose mannosyltransferase.},
author = {Cohen-Rosenzweig C, Yurist-Doutsch S, Eichler J.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.01716-12},
pmid = {23086206}
}
@article{lin411268,
title = {Prospects for robust biocatalysis: engineering of novel specificity in a halophilic amino acid dehydrogenase.},
author = {Munawar N, Engel PC.},
journal = {Extremophiles},
year = {2013},
doi = {10.1007/s00792-012-0491-7},
pmid = {23104166}
}
@article{lin411551,
title = {DNA damage induces nucleoid compaction via the Mre11-Rad50 complex in the archaeon Haloferax volcanii.},
author = {Delmas S, Duggin IG, Allers T.},
journal = {Mol Microbiol},
year = {2013},
doi = {10.1111/mmi.12091},
pmid = {23145964}
}
@article{lin162876,
title = {Quantifying homologous replacement of loci between haloarchaeal species.},
author = {Williams D, Gogarten JP, Papke RT.},
journal = {Genome Biol Evol},
year = {2012},
doi = {10.1093/gbe/evs098},
pmid = {23160063}
}
@article{lin411225,
title = {Effect of organic solvents on the activity and stability of halophilic alcohol dehydrogenase (ADH2) from Haloferax volcanii.},
author = {Alsafadi D, Paradisi F.},
journal = {Extremophiles},
year = {2013},
doi = {10.1007/s00792-012-0498-0},
pmid = {23179592}
}
@article{lin411439,
title = {Lipid modification gives rise to two distinct Haloferax volcanii S-layer glycoprotein populations.},
author = {Kandiba L, Guan Z, Eichler J.},
journal = {Biochim Biophys Acta},
year = {2013},
doi = {10.1016/j.bbamem.2012.11.023},
pmid = {23201543}
}
@article{lin411456,
title = {Chromatin is an ancient innovation conserved between Archaea and Eukarya.},
author = {Ammar R, Torti D, Tsui K, Gebbia M, Durbic T, Bader GD, Giaever G, Nislow C.},
journal = {Elife},
year = {2012},
doi = {10.7554/elife.00078},
pmid = {23240084}
}
@article{lin411506,
title = {tRNA-derived fragments target the ribosome and function as regulatory non-coding RNA in Haloferax volcanii.},
author = {Gebetsberger J, Zywicki M, Kunzi A, Polacek N.},
journal = {Archaea},
year = {2012},
doi = {10.1155/2012/260909},
pmid = {23326205}
}
@article{lin411240,
title = {Effect of an overproduction of accessory Gvp proteins on gas vesicle formation in Haloferax volcanii.},
author = {Tavlaridou S, Faist K, Weitzel K, Pfeifer F.},
journal = {Extremophiles},
year = {2013},
doi = {10.1007/s00792-013-0515-y},
pmid = {23338749}
}
@article{lin411326,
title = {The ring of confidence: a haloarchaeal CRISPR/Cas system.},
author = {Maier LK, Stoll B, Brendel J, Fischer S, Pfeiffer F, Dyall-Smith M, Marchfelder A.},
journal = {Biochem Soc Trans},
year = {2013},
doi = {10.1042/bst20120263},
pmid = {23356314}
}
@article{lin411320,
title = {Hot and sweet: protein glycosylation in Crenarchaeota.},
author = {Meyer BH, Albers SV.},
journal = {Biochem Soc Trans},
year = {2013},
doi = {10.1042/bst20120296},
pmid = {23356316}
}
@article{lin411224,
title = {Add salt, add sugar: N-glycosylation in Haloferax volcanii.},
author = {Kaminski L, Naparstek S, Kandiba L, Cohen-Rosenzweig C, Arbiv A, Konrad Z, Eichler J.},
journal = {Biochem Soc Trans},
year = {2013},
doi = {10.1042/bst20120142},
pmid = {23356324}
}
@article{lin411684,
title = {The immune system of halophilic archaea.},
author = {Maier LK, Fischer S, Stoll B, Brendel J, Pfeiffer F, Dyall-Smith M, Marchfelder A.},
journal = {Mob Genet Elements},
year = {2012},
doi = {10.4161/mge.22530},
pmid = {23446883}
}
@article{lin411264,
title = {Cu-NirK from Haloferax mediterranei as an example of metalloprotein maturation and exportation via Tat system.},
author = {Esclapez J, Zafrilla B, Martinez-Espinosa RM, Bonete MJ.},
journal = {Biochim Biophys Acta},
year = {2013},
doi = {10.1016/j.bbapap.2013.03.002},
pmid = {23499847}
}
@article{lin162873,
title = {Amino acid substitutions in cold-adapted proteins from Halorubrum lacusprofundi, an extremely halophilic microbe from antarctica.},
author = {DasSarma S, Capes MD, Karan R, DasSarma P.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0058587},
pmid = {23536799}
}
@article{lin411400,
title = {Specificity of archaeal caspase activity in the extreme halophile Haloferax volcanii.},
author = {Seth-Pasricha M, Bidle KA, Bidle KD.},
journal = {Environ Microbiol Rep},
year = {2013},
doi = {10.1111/1758-2229.12010},
pmid = {23565123}
}
@article{lin162879,
title = {PH1: an archaeovirus of Haloarcula hispanica related to SH1 and HHIV-2.},
author = {Porter K, Tang SL, Chen CP, Chiang PW, Hong MJ, Dyall-Smith M.},
journal = {Archaea},
year = {2013},
doi = {10.1155/2013/456318},
pmid = {23585730}
}
@article{lin411246,
title = {Use of GFP-GvpE fusions to quantify the GvpD-mediated reduction of the transcriptional activator GvpE in haloarchaea.},
author = {Schmidt I, Pfeifer F.},
journal = {Arch Microbiol},
year = {2013},
doi = {10.1007/s00203-013-0885-7},
pmid = {23589224}
}
@article{lin411586,
title = {Essential requirements for the detection and degradation of invaders by the Haloferax volcanii CRISPR/Cas system I-B.},
author = {Maier LK, Lange SJ, Stoll B, Haas KA, Fischer S, Fischer E, Duchardt-Ferner E, Wohnert J, Backofen R, Marchfelder A.},
journal = {RNA Biol},
year = {2013},
doi = {10.4161/rna.24282},
pmid = {23594992}
}
@article{lin411245,
title = {Heterologous overexpression, purification and characterisation of an alcohol dehydrogenase (ADH2) from Halobacterium sp. NRC-1.},
author = {Liliensiek AK, Cassidy J, Gucciardo G, Whitely C, Paradisi F.},
journal = {Mol Biotechnol},
year = {2013},
doi = {10.1007/s12033-013-9666-4},
pmid = {23645073}
}
@article{lin411236,
title = {Haloferax volcanii archaeosortase is required for motility, mating, and C-terminal processing of the S-layer glycoprotein.},
author = {Abdul Halim MF, Pfeiffer F, Zou J, Frisch A, Haft D, Wu S, Tolic N, Brewer H, Payne SH, Pasa-Tolic L, Pohlschroder M.},
journal = {Mol Microbiol},
year = {2013},
doi = {10.1111/mmi.12248},
pmid = {23651326}
}
@article{lin411543,
title = {Expression in Haloferax volcanii of 3-hydroxy-3-methylglutaryl coenzyme A synthase facilitates isolation and characterization of the active form of a key enzyme required for polyisoprenoid cell membrane biosynthesis in halophilic archaea.},
author = {VanNice JC, Skaff DA, Wyckoff GJ, Miziorko HM.},
journal = {J Bacteriol},
year = {2013},
doi = {10.1128/jb.00485-13},
pmid = {23794621}
}
@article{lin411664,
title = {Novel archaeal adhesion pilins with a conserved N terminus.},
author = {Esquivel RN, Xu R, Pohlschroder M.},
journal = {J Bacteriol},
year = {2013},
doi = {10.1128/jb.00572-13},
pmid = {23794623}
}
@article{lin411337,
title = {Ionic strength-dependent conformations of a ubiquitin-like small archaeal modifier protein (SAMP1) from Haloferax volcanii.},
author = {Ye K, Liao S, Zhang W, Fan K, Zhang X, Zhang J, Xu C, Tu X.},
journal = {Protein Sci},
year = {2013},
doi = {10.1002/pro.2302},
pmid = {23818097}
}
@article{lin411553,
title = {Crystal structure of the ubiquitin-like small archaeal modifier protein 2 from Haloferax volcanii.},
author = {Li Y, Maciejewski MW, Martin J, Jin K, Zhang Y, Maupin-Furlow JA, Hao B.},
journal = {Protein Sci},
year = {2013},
doi = {10.1002/pro.2305},
pmid = {23821306}
}
@article{lin411382,
title = {Ionic strength-dependent conformations of a ubiquitin-like small archaeal modifier protein (SAMP2) from Haloferax volcanii.},
author = {Liao S, Zhang W, Fan K, Ye K, Zhang X, Zhang J, Xu C, Tu X.},
journal = {Sci Rep},
year = {2013},
doi = {10.1038/srep02136},
pmid = {23823798}
}
@article{lin411215,
title = {L-Arabinose degradation pathway in the haloarchaeon Haloferax volcanii involves a novel type of L-arabinose dehydrogenase.},
author = {Johnsen U, Sutter JM, Zaiss H, Schonheit P.},
journal = {Extremophiles},
year = {2013},
doi = {10.1007/s00792-013-0572-2},
pmid = {23949136}
}
@article{lin411552,
title = {Haloferax volcanii cells lacking the flagellin FlgA2 are hypermotile.},
author = {Tripepi M, Esquivel RN, Wirth R, Pohlschroder M.},
journal = {Microbiology (Reading)},
year = {2013},
doi = {10.1099/mic.0.069617-0},
pmid = {23989184}
}
@article{lin411303,
title = {Mapping of active replication origins in vivo in thaum- and euryarchaeal replicons.},
author = {Pelve EA, Martens-Habbena W, Stahl DA, Bernander R.},
journal = {Mol Microbiol},
year = {2013},
doi = {10.1111/mmi.12382},
pmid = {23991938}
}
@article{lin411230,
title = {A halocin-H4 mutant Haloferax mediterranei strain retains the ability to inhibit growth of other halophilic archaea.},
author = {Naor A, Yair Y, Gophna U.},
journal = {Extremophiles},
year = {2013},
doi = {10.1007/s00792-013-0579-8},
pmid = {24037372}
}
@article{lin411544,
title = {Intracellular dynamics of archaeal FANCM homologue Hef in response to halted DNA replication.},
author = {Lestini R, Laptenok SP, Kuhn J, Hink MA, Schanne-Klein MC, Liebl U, Myllykallio H.},
journal = {Nucleic Acids Res},
year = {2013},
doi = {10.1093/nar/gkt816},
pmid = {24049073}
}
@article{lin411188,
title = {Covalent immobilization of alcohol dehydrogenase (ADH2) from Haloferax volcanii: how to maximize activity and optimize performance of halophilic enzymes.},
author = {Alsafadi D, Paradisi F.},
journal = {Mol Biotechnol},
year = {2014},
doi = {10.1007/s12033-013-9701-5},
pmid = {24062264}
}
@article{lin411715,
title = {High level of intergenera gene exchange shapes the evolution of haloarchaea in an isolated Antarctic lake.},
author = {DeMaere MZ, Williams TJ, Allen MA, Brown MV, Gibson JA, Rich J, Lauro FM, Dyall-Smith M, Davenport KW, Woyke T, Kyrpides NC, Tringe SG, Cavicchioli R.},
journal = {Proc Natl Acad Sci U S A},
year = {2013},
doi = {10.1073/pnas.1307090110},
pmid = {24082106}
}
@article{lin162861,
title = {Archaeal ubiquitin-like SAMP3 is isopeptide-linked to proteins via a UbaA-dependent mechanism.},
author = {Miranda HV, Antelmann H, Hepowit N, Chavarria NE, Krause DJ, Pritz JR, Basell K, Becher D, Humbard MA, Brocchieri L, Maupin-Furlow JA.},
journal = {Mol Cell Proteomics},
year = {2014},
doi = {10.1074/mcp.m113.029652},
pmid = {24097257}
}
@article{lin411634,
title = {Accelerated growth in the absence of DNA replication origins.},
author = {Hawkins M, Malla S, Blythe MJ, Nieduszynski CA, Allers T.},
journal = {Nature},
year = {2013},
doi = {10.1038/nature12650},
pmid = {24185008}
}
@article{lin411481,
title = {Two distinct N-glycosylation pathways process the Haloferax volcanii S-layer glycoprotein upon changes in environmental salinity.},
author = {Kaminski L, Guan Z, Yurist-Doutsch S, Eichler J.},
journal = {mBio},
year = {2013},
doi = {10.1128/mbio.00716-13},
pmid = {24194539}
}
@article{lin411749,
title = {Substrate promiscuity: AglB, the archaeal oligosaccharyltransferase, can process a variety of lipid-linked glycans.},
author = {Cohen-Rosenzweig C, Guan Z, Shaanan B, Eichler J.},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.03191-13},
pmid = {24212570}
}
@article{lin411474,
title = {AglQ is a novel component of the Haloferax volcanii N-glycosylation pathway.},
author = {Arbiv A, Yurist-Doutsch S, Guan Z, Eichler J.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0081782},
pmid = {24236216}
}
@article{lin411635,
title = {A comprehensive analysis of the importance of translation initiation factors for Haloferax volcanii applying deletion and conditional depletion mutants.},
author = {Gabel K, Schmitt J, Schulz S, Nather DJ, Soppa J.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0077188},
pmid = {24244275}
}
@article{lin411242,
title = {Requirements for a successful defence reaction by the CRISPR-Cas subtype I-B system.},
author = {Stoll B, Maier LK, Lange SJ, Brendel J, Fischer S, Backofen R, Marchfelder A.},
journal = {Biochem Soc Trans},
year = {2013},
doi = {10.1042/bst20130098},
pmid = {24256235}
}
@article{lin411598,
title = {Conserved substitution patterns around nucleosome footprints in eukaryotes and Archaea derive from frequent nucleosome repositioning through evolution.},
author = {Warnecke T, Becker EA, Facciotti MT, Nislow C, Lehner B.},
journal = {PLoS Comput Biol},
year = {2013},
doi = {10.1371/journal.pcbi.1003373},
pmid = {24278010}
}
@article{lin411495,
title = {Structural and biochemical properties of an extreme 'salt-loving' proteasome activating nucleotidase from the archaeon Haloferax volcanii.},
author = {Prunetti L, Reuter CJ, Hepowit NL, Wu Y, Barrueto L, Miranda HV, Kelly K, Maupin-Furlow JA.},
journal = {Extremophiles},
year = {2014},
doi = {10.1007/s00792-013-0615-8},
pmid = {24343376}
}
@article{lin411494,
title = {Identification in Haloferax volcanii of phosphomevalonate decarboxylase and isopentenyl phosphate kinase as catalysts of the terminal enzyme reactions in an archaeal alternate mevalonate pathway.},
author = {Vannice JC, Skaff DA, Keightley A, Addo JK, Wyckoff GJ, Miziorko HM.},
journal = {J Bacteriol},
year = {2014},
doi = {10.1128/jb.01230-13},
pmid = {24375100}
}
@article{lin411504,
title = {Dihydroxyacetone metabolism in Haloferax volcanii.},
author = {Ouellette M, Makkay AM, Papke RT.},
journal = {Front Microbiol},
year = {2013},
doi = {10.3389/fmicb.2013.00376},
pmid = {24379808}
}
@article{lin411391,
title = {N-glycosylation in Haloferax volcanii: adjusting the sweetness.},
author = {Eichler J, Arbiv A, Cohen-Rosenzweig C, Kaminski L, Kandiba L, Konrad Z.},
journal = {Front Microbiol},
year = {2013},
doi = {10.3389/fmicb.2013.00403},
pmid = {24399998}
}
@article{lin411206,
title = {The LonB protease controls membrane lipids composition and is essential for viability in the extremophilic haloarchaeon Haloferax volcanii.},
author = {Cerletti M, Martinez MJ, Gimenez MI, Sastre DE, Paggi RA, De Castro RE.},
journal = {Environ Microbiol},
year = {2014},
doi = {10.1111/1462-2920.12385},
pmid = {24428705}
}
@article{lin411661,
title = {A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in Haloferax volcanii.},
author = {Brendel J, Stoll B, Lange SJ, Sharma K, Lenz C, Stachler AE, Maier LK, Richter H, Nickel L, Schmitz RA, Randau L, Allers T, Urlaub H, Backofen R, Marchfelder A.},
journal = {J Biol Chem},
year = {2014},
doi = {10.1074/jbc.m113.508184},
pmid = {24459147}
}
@article{lin411654,
title = {A rhomboid protease gene deletion affects a novel oligosaccharide N-linked to the S-layer glycoprotein of Haloferax volcanii.},
author = {Parente J, Casabuono A, Ferrari MC, Paggi RA, De Castro RE, Couto AS, Gimenez MI.},
journal = {J Biol Chem},
year = {2014},
doi = {10.1074/jbc.m113.546531},
pmid = {24596091}
}
@article{lin411465,
title = {Extracellular DNA metabolism in Haloferax volcanii.},
author = {Chimileski S, Dolas K, Naor A, Gophna U, Papke RT.},
journal = {Front Microbiol},
year = {2014},
doi = {10.3389/fmicb.2014.00057},
pmid = {24600440}
}
@article{lin411578,
title = {Light-dependent expression of four cryptic archaeal circadian gene homologs.},
author = {Maniscalco M, Nannen J, Sodi V, Silver G, Lowrey PL, Bidle KA.},
journal = {Front Microbiol},
year = {2014},
doi = {10.3389/fmicb.2014.00079},
pmid = {24624125}
}
@article{lin411497,
title = {Generation and phenotyping of a collection of sRNA gene deletion mutants of the haloarchaeon Haloferax volcanii.},
author = {Jaschinski K, Babski J, Lehr M, Burmester A, Benz J, Heyer R, Dorr M, Marchfelder A, Soppa J.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0090763},
pmid = {24637842}
}
@article{lin411214,
title = {Chromosome replication origins: do we really need them?},
author = {Michel B, Bernander R.},
journal = {Bioessays},
year = {2014},
doi = {10.1002/bies.201400003},
pmid = {24644021}
}
@article{lin411510,
title = {The haloarchaeal MCM proteins: bioinformatic analysis and targeted mutagenesis of the beta7-beta8 and beta9-beta10 hairpin loops and conserved zinc binding domain cysteines.},
author = {Kristensen TP, Maria Cherian R, Gray FC, MacNeill SA.},
journal = {Front Microbiol},
year = {2014},
doi = {10.3389/fmicb.2014.00123},
pmid = {24723920}
}
@article{lin411604,
title = {Haloferax volcanii, a prokaryotic species that does not use the Shine Dalgarno mechanism for translation initiation at 5'-UTRs.},
author = {Kramer P, Gabel K, Pfeiffer F, Soppa J.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0094979},
pmid = {24733188}
}
@article{lin411609,
title = {DNA as a phosphate storage polymer and the alternative advantages of polyploidy for growth or survival.},
author = {Zerulla K, Chimileski S, Nather D, Gophna U, Papke RT, Soppa J.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0094819},
pmid = {24733558}
}
@article{lin411784,
title = {Small regulatory RNAs in Archaea.},
author = {Babski J, Maier LK, Heyer R, Jaschinski K, Prasse D, Jager D, Randau L, Schmitz RA, Marchfelder A, Soppa J.},
journal = {RNA Biol},
year = {2014},
doi = {10.4161/rna.28452},
pmid = {24755959}
}
@article{lin411417,
title = {DNA replication origins in archaea.},
author = {Wu Z, Liu J, Yang H, Xiang H.},
journal = {Front Microbiol},
year = {2014},
doi = {10.3389/fmicb.2014.00179},
pmid = {24808892}
}
@article{lin411466,
title = {Haloferax volcanii N-glycosylation: delineating the pathway of dTDP-rhamnose biosynthesis.},
author = {Kaminski L, Eichler J.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0097441},
pmid = {24831810}
}
@article{lin411218,
title = {The accessory gas vesicle protein GvpM of haloarchaea and its interaction partners during gas vesicle formation.},
author = {Tavlaridou S, Winter K, Pfeifer F.},
journal = {Extremophiles},
year = {2014},
doi = {10.1007/s00792-014-0650-0},
pmid = {24846741}
}
@article{lin411583,
title = {aglgenes, A curated and searchable database of archaeal N-glycosylation pathway components.},
author = {Godin N, Eichler J.},
journal = {Database (Oxford)},
year = {2014},
doi = {10.1093/database/bau046},
pmid = {24890856}
}
@article{lin411641,
title = {Archaeal Tuc1/Ncs6 homolog required for wobble uridine tRNA thiolation is associated with ubiquitin-proteasome, translation, and RNA processing system homologs.},
author = {Chavarria NE, Hwang S, Cao S, Fu X, Holman M, Elbanna D, Rodriguez S, Arrington D, Englert M, Uthandi S, Soll D, Maupin-Furlow JA.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0099104},
pmid = {24906001}
}
@article{lin411222,
title = {A conserved type IV pilin signal peptide H-domain is critical for the post-translational regulation of flagella-dependent motility.},
author = {Esquivel RN, Pohlschroder M.},
journal = {Mol Microbiol},
year = {2014},
doi = {10.1111/mmi.12673},
pmid = {24945931}
}
@article{lin411738,
title = {Polyploidy in haloarchaea: advantages for growth and survival.},
author = {Zerulla K, Soppa J.},
journal = {Front Microbiol},
year = {2014},
doi = {10.3389/fmicb.2014.00274},
pmid = {24982654}
}
@article{lin411365,
title = {Biofilms formed by the archaeon Haloferax volcanii exhibit cellular differentiation and social motility, and facilitate horizontal gene transfer.},
author = {Chimileski S, Franklin MJ, Papke RT.},
journal = {BMC Biol},
year = {2014},
doi = {10.1186/s12915-014-0065-5},
pmid = {25124934}
}
@article{lin411183,
title = {XacR - a novel transcriptional regulator of D-xylose and L-arabinose catabolism in the haloarchaeon Haloferax volcanii.},
author = {Johnsen U, Sutter JM, Schulz AC, Tastensen JB, Schonheit P.},
journal = {Environ Microbiol},
year = {2015},
doi = {10.1111/1462-2920.12603},
pmid = {25141768}
}
@article{lin411179,
title = {A simple technique to improve the resolution of membrane acidic proteins of the haloarchaeon Haloferax volcanii by 2D electrophoresis.},
author = {Paggi RA, Gimenez MI, De Castro RE, Cesari A.},
journal = {Electrophoresis},
year = {2014},
doi = {10.1002/elps.201400407},
pmid = {25224925}
}
@article{lin162886,
title = {Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea.},
author = {Chronopoulou PM, Sanni GO, Silas-Olu DI, van der Meer JR, Timmis KN, Brussaard CP, McGenity TJ.},
journal = {Microb Biotechnol},
year = {2015},
doi = {10.1111/1751-7915.12176},
pmid = {25251384}
}
@article{lin411573,
title = {Association between the dynamics of multiple replication origins and the evolution of multireplicon genome architecture in haloarchaea.},
author = {Wu Z, Yang H, Liu J, Wang L, Xiang H.},
journal = {Genome Biol Evol},
year = {2014},
doi = {10.1093/gbe/evu219},
pmid = {25281843}
}
@article{lin411448,
title = {The effects of extremes of pH on the growth and transcriptomic profiles of three haloarchaea.},
author = {Moran-Reyna A, Coker JA.},
journal = {F1000Res},
year = {2014},
doi = {10.12688/f1000research.4789.2},
pmid = {25285207}
}
@article{lin411172,
title = {Identification and characterization of 2-keto-3-deoxygluconate kinase and 2-keto-3-deoxygalactonate kinase in the haloarchaeon Haloferax volcanii.},
author = {Pickl A, Johnsen U, Archer RM, Schonheit P.},
journal = {FEMS Microbiol Lett},
year = {2014},
doi = {10.1111/1574-6968.12617},
pmid = {25287957}
}
@article{lin411403,
title = {Conserved active site cysteine residue of archaeal THI4 homolog is essential for thiamine biosynthesis in Haloferax volcanii.},
author = {Hwang S, Cordova B, Chavarria N, Elbanna D, McHugh S, Rojas J, Pfeiffer F, Maupin-Furlow JA.},
journal = {BMC Microbiol},
year = {2014},
doi = {10.1186/s12866-014-0260-0},
pmid = {25348237}
}
@article{lin411261,
title = {Deciphering archaeal glycolipids of an extremely halophilic archaeon of the genus Halobellus by MALDI-TOF/MS.},
author = {Lobasso S, Perez-Davo A, Vitale R, Sanchez MM, Corcelli A.},
journal = {Chem Phys Lipids},
year = {2015},
doi = {10.1016/j.chemphyslip.2014.11.002},
pmid = {25447292}
}
@article{lin411335,
title = {Deciphering a pathway of Halobacterium salinarum N-glycosylation.},
author = {Kandiba L, Eichler J.},
journal = {Microbiologyopen},
year = {2015},
doi = {10.1002/mbo3.215},
pmid = {25461760}
}
@article{lin411457,
title = {The Halophile protein database.},
author = {Sharma N, Farooqi MS, Chaturvedi KK, Lal SB, Grover M, Rai A, Pandey P.},
journal = {Database (Oxford)},
year = {2014},
doi = {10.1093/database/bau114},
pmid = {25468930}
}
@article{lin162884,
title = {Methanogen prevalence throughout the gastrointestinal tract of pre-weaned dairy calves.},
author = {Zhou M, Chen Y, Griebel PJ, Guan le L.},
journal = {Gut Microbes},
year = {2014},
doi = {10.4161/19490976.2014.969649},
pmid = {25483332}
}
@article{lin411517,
title = {Generation of comprehensive transposon insertion mutant library for the model archaeon, Haloferax volcanii, and its use for gene discovery.},
author = {Kiljunen S, Pajunen MI, Dilks K, Storf S, Pohlschroder M, Savilahti H.},
journal = {BMC Biol},
year = {2014},
doi = {10.1186/s12915-014-0103-3},
pmid = {25488358}
}
@article{lin411266,
title = {Secretion of Tat-dependent halolysin SptA capable of autocatalytic activation and its relation to haloarchaeal growth.},
author = {Du X, Li M, Tang W, Zhang Y, Zhang L, Wang J, Li T, Tang B, Tang XF.},
journal = {Mol Microbiol},
year = {2015},
doi = {10.1111/mmi.12955},
pmid = {25641392}
}
@article{lin162868,
title = {Deconstruction of archaeal genome depict strategic consensus in core pathways coding sequence assembly.},
author = {Pal A, Banerjee R, Mondal UK, Mukhopadhyay S, Bothra AK.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0118245},
pmid = {25674789}
}
@article{lin411428,
title = {The Adaptive Immune System of Haloferax volcanii.},
author = {Maier LK, Dyall-Smith M, Marchfelder A.},
journal = {Life (Basel)},
year = {2015},
doi = {10.3390/life5010521},
pmid = {25692903}
}
@article{lin411270,
title = {Polyploidy in archaea and bacteria: about desiccation resistance, giant cell size, long-term survival, enforcement by a eukaryotic host and additional aspects.},
author = {Soppa J.},
journal = {J Mol Microbiol Biotechnol},
year = {2014},
doi = {10.1159/000368855},
pmid = {25732342}
}
@article{lin411197,
title = {Deletion of the Sm1 encoding motif in the lsm gene results in distinct changes in the transcriptome and enhanced swarming activity of Haloferax cells.},
author = {Maier LK, Benz J, Fischer S, Alstetter M, Jaschinski K, Hilker R, Becker A, Allers T, Soppa J, Marchfelder A.},
journal = {Biochimie},
year = {2015},
doi = {10.1016/j.biochi.2015.02.023},
pmid = {25754521}
}
@article{lin411401,
title = {Haloferax volcanii, as a Novel Tool for Producing Mammalian Olfactory Receptors Embedded in Archaeal Lipid Bilayer.},
author = {Lobasso S, Vitale R, Lopalco P, Corcelli A.},
journal = {Life (Basel)},
year = {2015},
doi = {10.3390/life5010770},
pmid = {25761264}
}
@article{lin411424,
title = {Archaeal membrane-associated proteases: insights on Haloferax volcanii and other haloarchaea.},
author = {Gimenez MI, Cerletti M, De Castro RE.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00039},
pmid = {25774151}
}
@article{lin411176,
title = {Global role of the membrane protease LonB in Archaea: Potential protease targets revealed by quantitative proteome analysis of a lonB mutant in Haloferax volcanii.},
author = {Cerletti M, Paggi RA, Guevara CR, Poetsch A, De Castro RE.},
journal = {J Proteomics},
year = {2015},
doi = {10.1016/j.jprot.2015.03.016},
pmid = {25829260}
}
@article{lin411152,
title = {The oxidative pentose phosphate pathway in the haloarchaeon Haloferax volcanii involves a novel type of glucose-6-phosphate dehydrogenase--The archaeal Zwischenferment.},
author = {Pickl A, Schonheit P.},
journal = {FEBS Lett},
year = {2015},
doi = {10.1016/j.febslet.2015.03.026},
pmid = {25836736}
}
@article{lin411190,
title = {[An efficient genetic knockout system based on linear DNA fragment homologous recombination for halophilic archaea].},
author = {Wang XL, Jiang C, Liu JH, Liu XP.},
journal = {Yi Chuan},
year = {2015},
doi = {10.16288/j.yczz.14-366},
pmid = {25881705}
}
@article{lin411354,
title = {Genome-wide DNA methylation analysis of Haloferax volcanii H26 and identification of DNA methyltransferase related PD-(D/E)XK nuclease family protein HVO_A0006.},
author = {Ouellette M, Jackson L, Chimileski S, Papke RT.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00251},
pmid = {25904898}
}
@article{lin411171,
title = {Molecular Genetic Methods to Study DNA Replication Protein Function in Haloferax volcanii, A Model Archaeal Organism.},
author = {Giroux X, MacNeill SA.},
journal = {Methods Mol Biol},
year = {2015},
doi = {10.1007/978-1-4939-2596-4_13},
pmid = {25916714}
}
@article{lin411377,
title = {Nonsense suppression in archaea.},
author = {Bhattacharya A, Kohrer C, Mandal D, RajBhandary UL.},
journal = {Proc Natl Acad Sci U S A},
year = {2015},
doi = {10.1073/pnas.1501558112},
pmid = {25918386}
}
@article{lin411700,
title = {Ubiquitin-Like Protein SAMP1 and JAMM/MPN+ Metalloprotease HvJAMM1 Constitute a System for Reversible Regulation of Metabolic Enzyme Activity in Archaea.},
author = {Cao S, Hepowit N, Maupin-Furlow JA.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0128399},
pmid = {26010867}
}
@article{lin411548,
title = {A manual curation strategy to improve genome annotation: application to a set of haloarchael genomes.},
author = {Pfeiffer F, Oesterhelt D.},
journal = {Life (Basel)},
year = {2015},
doi = {10.3390/life5021427},
pmid = {26042526}
}
@article{lin411545,
title = {Characterization of D-xylonate dehydratase YjhG from Escherichia coli.},
author = {Jiang Y, Liu W, Cheng T, Cao Y, Zhang R, Xian M.},
journal = {Bioengineered},
year = {2015},
doi = {10.1080/21655979.2015.1040208},
pmid = {26083940}
}
@article{lin411426,
title = {The role of Cas8 in type I CRISPR interference.},
author = {Cass SD, Haas KA, Stoll B, Alkhnbashi OS, Sharma K, Urlaub H, Backofen R, Marchfelder A, Bolt EL.},
journal = {Biosci Rep},
year = {2015},
doi = {10.1042/bsr20150043},
pmid = {26182359}
}
@article{lin411147,
title = {DNA replication restart and cellular dynamics of Hef helicase/nuclease protein in Haloferax volcanii.},
author = {Lestini R, Delpech F, Myllykallio H.},
journal = {Biochimie},
year = {2015},
doi = {10.1016/j.biochi.2015.07.022},
pmid = {26215377}
}
@article{lin411622,
title = {Haloarchaea Endowed with Phosphorus Solubilization Attribute Implicated in Phosphorus Cycle.},
author = {Yadav AN, Sharma D, Gulati S, Singh S, Dey R, Pal KK, Kaushik R, Saxena AK.},
journal = {Sci Rep},
year = {2015},
doi = {10.1038/srep12293},
pmid = {26216440}
}
@article{lin411257,
title = {Data in support of global role of the membrane protease LonB in Archaea: Potential protease targets revealed by quantitative proteome analysis of a lonB mutant in Haloferax volcanii.},
author = {Cerletti M, Paggi RA, Ramallo Guevara C, Poetsch A, De Castro RE.},
journal = {Data Brief},
year = {2015},
doi = {10.1016/j.dib.2015.04.013},
pmid = {26217762}
}
@article{lin411636,
title = {Revisiting the structure/function relationships of H/ACA(-like) RNAs: a unified model for Euryarchaea and Crenarchaea.},
author = {Toffano-Nioche C, Gautheret D, Leclerc F.},
journal = {Nucleic Acids Res},
year = {2015},
doi = {10.1093/nar/gkv756},
pmid = {26240384}
}
@article{lin411779,
title = {Assessing the genetic diversity of Cu resistance in mine tailings through high-throughput recovery of full-length copA genes.},
author = {Li X, Zhu YG, Shaban B, Bruxner TJ, Bond PL, Huang L.},
journal = {Sci Rep},
year = {2015},
doi = {10.1038/srep13258},
pmid = {26286020}
}
@article{lin411174,
title = {A novel archaeal DNA repair factor that acts with the UvrABC system to repair mitomycin C-induced DNA damage in a PCNA-dependent manner.},
author = {Giroux X, MacNeill SA.},
journal = {Mol Microbiol},
year = {2016},
doi = {10.1111/mmi.13210},
pmid = {26337406}
}
@article{lin411250,
title = {Enhancing recombinant protein solubility with ubiquitin-like small archeal modifying protein fusion partners.},
author = {Varga S, Pathare GR, Baka E, Boicu M, Kriszt B, Szekacs A, Zinzula L, Kukolya J, Nagy I.},
journal = {J Microbiol Methods},
year = {2015},
doi = {10.1016/j.mimet.2015.08.017},
pmid = {26341610}
}
@article{lin411707,
title = {Growth-Phase-Specific Modulation of Cell Morphology and Gene Expression by an Archaeal Histone Protein.},
author = {Dulmage KA, Todor H, Schmid AK.},
journal = {mBio},
year = {2015},
doi = {10.1128/mbio.00649-15},
pmid = {26350964}
}
@article{lin411619,
title = {Nucleotides Flanking the Start Codon in hsp70 mRNAs with Very Short 5'-UTRs Greatly Affect Gene Expression in Haloarchaea.},
author = {Chen W, Yang G, He Y, Zhang S, Chen H, Shen P, Chen X, Huang YP.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0138473},
pmid = {26379277}
}
@article{lin411134,
title = {Inhibiting NAD+-dependent DNA ligase activity with 2-(cyclopentyloxy)-5'-deoxyadenosine (CPOdA) offers a new tool for DNA replication and repair studies in the model archaeon Haloferax volcanii.},
author = {Giroux X, MacNeill SA.},
journal = {FEMS Microbiol Lett},
year = {2015},
doi = {10.1093/femsle/fnv181},
pmid = {26420852}
}
@article{lin411150,
title = {Production of halophilic proteins using Haloferax volcanii H1895 in a stirred-tank bioreactor.},
author = {Strillinger E, Grotzinger SW, Allers T, Eppinger J, Weuster-Botz D.},
journal = {Appl Microbiol Biotechnol},
year = {2016},
doi = {10.1007/s00253-015-7007-1},
pmid = {26428236}
}
@article{lin411136,
title = {Transcriptional regulation of dimethyl sulfoxide respiration in a haloarchaeon, Haloferax volcanii.},
author = {Qi Q, Ito Y, Yoshimatsu K, Fujiwara T.},
journal = {Extremophiles},
year = {2016},
doi = {10.1007/s00792-015-0794-6},
pmid = {26507955}
}
@article{lin411330,
title = {Archaeal Inorganic Pyrophosphatase Displays Robust Activity under High-Salt Conditions and in Organic Solvents.},
author = {McMillan LJ, Hepowit NL, Maupin-Furlow JA.},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/aem.03055-15},
pmid = {26546423}
}
@article{lin411429,
title = {Permuting the PGF Signature Motif Blocks both Archaeosortase-Dependent C-Terminal Cleavage and Prenyl Lipid Attachment for the Haloferax volcanii S-Layer Glycoprotein.},
author = {Abdul Halim MF, Karch KR, Zhou Y, Haft DH, Garcia BA, Pohlschroder M.},
journal = {J Bacteriol},
year = {2015},
doi = {10.1128/jb.00849-15},
pmid = {26712937}
}
@article{lin411464,
title = {Anaerobic Growth of Haloarchaeon Haloferax volcanii by Denitrification Is Controlled by the Transcription Regulator NarO.},
author = {Hattori T, Shiba H, Ashiki K, Araki T, Nagashima YK, Yoshimatsu K, Fujiwara T.},
journal = {J Bacteriol},
year = {2016},
doi = {10.1128/jb.00833-15},
pmid = {26787768}
}
@article{lin411468,
title = {Proteome targets of ubiquitin-like samp1ylation are associated with sulfur metabolism and oxidative stress in Haloferax volcanii.},
author = {Dantuluri S, Wu Y, Hepowit NL, Chen H, Chen S, Maupin-Furlow JA.},
journal = {Proteomics},
year = {2016},
doi = {10.1002/pmic.201500153},
pmid = {26841191}
}
@article{lin411144,
title = {Structural characterization of the N-linked pentasaccharide decorating glycoproteins of the halophilic archaeon Haloferax volcanii.},
author = {Kandiba L, Lin CW, Aebi M, Eichler J, Guerardel Y.},
journal = {Glycobiology},
year = {2016},
doi = {10.1093/glycob/cww014},
pmid = {26863921}
}
@article{lin411432,
title = {Identification of Haloferax volcanii Pilin N-Glycans with Diverse Roles in Pilus Biosynthesis, Adhesion, and Microcolony Formation.},
author = {Esquivel RN, Schulze S, Xu R, Hippler M, Pohlschroder M.},
journal = {J Biol Chem},
year = {2016},
doi = {10.1074/jbc.m115.693556},
pmid = {26966177}
}
@article{lin411388,
title = {tRNAmodpred: A computational method for predicting posttranscriptional modifications in tRNAs.},
author = {Machnicka MA, Dunin-Horkawicz S, de Crecy-Lagard V, Bujnicki JM.},
journal = {Methods},
year = {2016},
doi = {10.1016/j.ymeth.2016.03.013},
pmid = {27016142}
}
@article{lin411741,
title = {A homozygous truncating mutation in PUS3 expands the role of tRNA modification in normal cognition.},
author = {Shaheen R, Han L, Faqeih E, Ewida N, Alobeid E, Phizicky EM, Alkuraya FS.},
journal = {Hum Genet},
year = {2016},
doi = {10.1007/s00439-016-1665-7},
pmid = {27055666}
}
@article{lin411205,
title = {Transcription-coupled repair of UV damage in the halophilic archaea.},
author = {Stantial N, Dumpe J, Pietrosimone K, Baltazar F, Crowley DJ.},
journal = {DNA Repair (Amst)},
year = {2016},
doi = {10.1016/j.dnarep.2016.03.007},
pmid = {27088618}
}
@article{lin411528,
title = {Identification, Characterization, and Application of the Replicon Region of the Halophilic Temperate Sphaerolipovirus SNJ1.},
author = {Wang Y, Sima L, Lv J, Huang S, Liu Y, Wang J, Krupovic M, Chen X.},
journal = {J Bacteriol},
year = {2016},
doi = {10.1128/jb.00131-16},
pmid = {27137505}
}
@article{lin411509,
title = {Characterization of the ATP-Dependent Lon-Like Protease in Methanobrevibacter smithii.},
author = {Pei J, Yan J, Jiang Y.},
journal = {Archaea},
year = {2016},
doi = {10.1155/2016/5759765},
pmid = {27239160}
}
@article{lin411359,
title = {Key Enzymes of the Semiphosphorylative Entner-Doudoroff Pathway in the Haloarchaeon Haloferax volcanii: Characterization of Glucose Dehydrogenase, Gluconate Dehydratase, and 2-Keto-3-Deoxy-6-Phosphogluconate Aldolase.},
author = {Sutter JM, Tastensen JB, Johnsen U, Soppa J, Schonheit P.},
journal = {J Bacteriol},
year = {2016},
doi = {10.1128/jb.00286-16},
pmid = {27297879}
}
@article{lin411446,
title = {Accurate Prediction of the Statistics of Repetitions in Random Sequences: A Case Study in Archaea Genomes.},
author = {Regnier M, Chassignet P.},
journal = {Front Bioeng Biotechnol},
year = {2016},
doi = {10.3389/fbioe.2016.00035},
pmid = {27376057}
}
@article{lin410929,
title = {Haloferax massiliensis sp. nov., the first human-associated halophilic archaea.},
author = {Khelaifia S, Raoult D.},
journal = {New Microbes New Infect},
year = {2016},
doi = {10.1016/j.nmni.2016.05.007},
pmid = {27408734}
}
@article{lin411488,
title = {Impact of a homing intein on recombination frequency and organismal fitness.},
author = {Naor A, Altman-Price N, Soucy SM, Green AG, Mitiagin Y, Turgeman-Grott I, Davidovich N, Gogarten JP, Gophna U.},
journal = {Proc Natl Acad Sci U S A},
year = {2016},
doi = {10.1073/pnas.1606416113},
pmid = {27462108}
}
@article{lin411508,
title = {Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq).},
author = {Babski J, Haas KA, Nather-Schindler D, Pfeiffer F, Forstner KU, Hammelmann M, Hilker R, Becker A, Sharma CM, Marchfelder A, Soppa J.},
journal = {BMC Genomics},
year = {2016},
doi = {10.1186/s12864-016-2920-y},
pmid = {27519343}
}
@article{lin411440,
title = {AglM and VNG1048G, Two Haloarchaeal UDP-Glucose Dehydrogenases, Show Different Salt-Related Behaviors.},
author = {Kandiba L, Eichler J.},
journal = {Life (Basel)},
year = {2016},
doi = {10.3390/life6030031},
pmid = {27527219}
}
@article{lin411511,
title = {Structure-function relationships of archaeal Cbf5 during in vivo RNA-guided pseudouridylation.},
author = {Majumder M, Bosmeny MS, Gupta R.},
journal = {RNA},
year = {2016},
doi = {10.1261/rna.057547.116},
pmid = {27539785}
}
@article{lin411110,
title = {Haloferax volcanii UbaA, catalytic engine for sampylation and sulfur transfer.},
author = {Bochtler M, Piasecka A.},
journal = {FEBS J},
year = {2016},
doi = {10.1111/febs.13826},
pmid = {27542853}
}
@article{lin411165,
title = {Important roles for membrane lipids in haloarchaeal bioenergetics.},
author = {Kellermann MY, Yoshinaga MY, Valentine RC, Wormer L, Valentine DL.},
journal = {Biochim Biophys Acta},
year = {2016},
doi = {10.1016/j.bbamem.2016.08.010},
pmid = {27565574}
}
@article{lin411691,
title = {tRNA-derived short RNAs bind to Saccharomyces cerevisiae ribosomes in a stress-dependent manner and inhibit protein synthesis in vitro.},
author = {Bakowska-Zywicka K, Kasprzyk M, Twardowski T.},
journal = {FEMS Yeast Res},
year = {2016},
doi = {10.1093/femsyr/fow077},
pmid = {27609601}
}
@article{lin411743,
title = {Major and minor crRNA annealing sites facilitate low stringency DNA protospacer binding prior to Type I-A CRISPR-Cas interference in Sulfolobus.},
author = {Mousaei M, Deng L, She Q, Garrett RA.},
journal = {RNA Biol},
year = {2016},
doi = {10.1080/15476286.2016.1229735},
pmid = {27618562}
}
@article{lin411111,
title = {Transposon Insertion Mutagenesis for Archaeal Gene Discovery.},
author = {Kiljunen S, Pajunen MI, Savilahti H.},
journal = {Methods Mol Biol},
year = {2017},
doi = {10.1007/978-1-4939-6472-7_20},
pmid = {27709584}
}
@article{lin411484,
title = {A tRNA-derived fragment competes with mRNA for ribosome binding and regulates translation during stress.},
author = {Gebetsberger J, Wyss L, Mleczko AM, Reuther J, Polacek N.},
journal = {RNA Biol},
year = {2017},
doi = {10.1080/15476286.2016.1257470},
pmid = {27892771}
}
@article{lin411370,
title = {Screening of a Haloferax volcanii Transposon Library Reveals Novel Motility and Adhesion Mutants.},
author = {Legerme G, Yang E, Esquivel RN, Kiljunen S, Savilahti H, Pohlschroder M.},
journal = {Life (Basel)},
year = {2016},
doi = {10.3390/life6040041},
pmid = {27898036}
}
@article{lin411671,
title = {Complementation of an aglB Mutant of Methanococcus maripaludis with Heterologous Oligosaccharyltransferases.},
author = {Ding Y, Vrionis HA, Schneider J, Berezuk A, Khursigara CM, Jarrell KF.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0167611},
pmid = {27907170}
}
@article{lin411655,
title = {A Novel Transcriptional Regulator Related to Thiamine Phosphate Synthase Controls Thiamine Metabolism Genes in Archaea.},
author = {Rodionov DA, Leyn SA, Li X, Rodionova IA.},
journal = {J Bacteriol},
year = {2017},
doi = {10.1128/jb.00743-16},
pmid = {27920295}
}
@article{lin411304,
title = {N-Glycosylation Is Important for Proper Haloferax volcanii S-Layer Stability and Function.},
author = {Tamir A, Eichler J.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.03152-16},
pmid = {28039139}
}
@article{lin162883,
title = {Deciphering the Translation Initiation Factor 5A Modification Pathway in Halophilic Archaea.},
author = {Prunetti L, Graf M, Blaby IK, Peil L, Makkay AM, Starosta AL, Papke RT, Oshima T, Wilson DN, de Crecy-Lagard V.},
journal = {Archaea},
year = {2016},
doi = {10.1155/2016/7316725},
pmid = {28053595}
}
@article{lin411503,
title = {ArtA-Dependent Processing of a Tat Substrate Containing a Conserved Tripartite Structure That Is Not Localized at the C Terminus.},
author = {Abdul Halim MF, Stoltzfus JD, Schulze S, Hippler M, Pohlschroder M.},
journal = {J Bacteriol},
year = {2017},
doi = {10.1128/jb.00802-16},
pmid = {28069824}
}
@article{lin411540,
title = {Determining virus-host interactions and glycerol metabolism profiles in geographically diverse solar salterns with metagenomics.},
author = {Moller AG, Liang C.},
journal = {PeerJ},
year = {2017},
doi = {10.7717/peerj.2844},
pmid = {28097058}
}
@article{lin411737,
title = {Is phosphatidylglycerol essential for terrestrial life?},
author = {Furse S.},
journal = {J Chem Biol},
year = {2017},
doi = {10.1007/s12154-016-0159-3},
pmid = {28101250}
}
@article{lin411454,
title = {ThiN as a Versatile Domain of Transcriptional Repressors and Catalytic Enzymes of Thiamine Biosynthesis.},
author = {Hwang S, Cordova B, Abdo M, Pfeiffer F, Maupin-Furlow JA.},
journal = {J Bacteriol},
year = {2017},
doi = {10.1128/jb.00810-16},
pmid = {28115546}
}
@article{lin411758,
title = {Trm112, a Protein Activator of Methyltransferases Modifying Actors of the Eukaryotic Translational Apparatus.},
author = {Bourgeois G, Letoquart J, van Tran N, Graille M.},
journal = {Biomolecules},
year = {2017},
doi = {10.3390/biom7010007},
pmid = {28134793}
}
@article{lin411235,
title = {Diversity of DNA Replication in the Archaea.},
author = {Ausiannikava D, Allers T.},
journal = {Genes (Basel)},
year = {2017},
doi = {10.3390/genes8020056},
pmid = {28146124}
}
@article{lin411648,
title = {Genome-wide primary transcriptome analysis of H2-producing archaeon Thermococcus onnurineus NA1.},
author = {Cho S, Kim MS, Jeong Y, Lee BR, Lee JH, Kang SG, Cho BK.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/srep43044},
pmid = {28216628}
}
@article{lin411374,
title = {Toward Time-Resolved Analysis of RNA Metabolism in Archaea Using 4-Thiouracil.},
author = {Knuppel R, Kuttenberger C, Ferreira-Cerca S.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00286},
pmid = {28286499}
}
@article{lin411327,
title = {High tolerance to self-targeting of the genome by the endogenous CRISPR-Cas system in an archaeon.},
author = {Stachler AE, Turgeman-Grott I, Shtifman-Segal E, Allers T, Marchfelder A, Gophna U.},
journal = {Nucleic Acids Res},
year = {2017},
doi = {10.1093/nar/gkx150},
pmid = {28334774}
}
@article{lin162874,
title = {Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).},
author = {Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S, Stewart Johnson S, Baldwin DA, Bivens N, Ajami N, Carmical JR, Herriott IC, Colwell R, Donia M, Foox J, Greenfield N, Hunter T, Hoffman J, Hyman J, Jorgensen E, Krawczyk D, Lee J, Levy S, Garcia-Reyero N, Settles M, Thomas K, Gomez F, Schriml L, Kyrpides N, Zaikova E, Penterman J, Mason CE.},
journal = {J Biomol Tech},
year = {2017},
doi = {10.7171/jbt.17-2801-004},
pmid = {28337070}
}
@article{lin411527,
title = {Construction of Expression Shuttle Vectors for the Haloarchaeon Natrinema sp. J7 Based on Its Chromosomal Origins of Replication.},
author = {Wang Y, Chen B, Sima L, Cao M, Chen X.},
journal = {Archaea},
year = {2017},
doi = {10.1155/2017/4237079},
pmid = {28348508}
}
@article{lin411387,
title = {Engineering and expressing circular RNAs via tRNA splicing.},
author = {Noto JJ, Schmidt CA, Matera AG.},
journal = {RNA Biol},
year = {2017},
doi = {10.1080/15476286.2017.1317911},
pmid = {28402213}
}
@article{lin411627,
title = {Activity-based protein profiling as a robust method for enzyme identification and screening in extremophilic Archaea.},
author = {Zweerink S, Kallnik V, Ninck S, Nickel S, Verheyen J, Blum M, Wagner A, Feldmann I, Sickmann A, Albers SV, Brasen C, Kaschani F, Siebers B, Kaiser M.},
journal = {Nat Commun},
year = {2017},
doi = {10.1038/ncomms15352},
pmid = {28480883}
}
@article{lin411357,
title = {RadB acts in homologous recombination in the archaeon Haloferax volcanii, consistent with a role as recombination mediator.},
author = {Wardell K, Haldenby S, Jones N, Liddell S, Ngo GHP, Allers T.},
journal = {DNA Repair (Amst)},
year = {2017},
doi = {10.1016/j.dnarep.2017.04.005},
pmid = {28501701}
}
@article{lin411461,
title = {Sulfated archaeal glycolipid archaeosomes as a safe and effective vaccine adjuvant for induction of cell-mediated immunity.},
author = {McCluskie MJ, Deschatelets L, Krishnan L.},
journal = {Hum Vaccin Immunother},
year = {2017},
doi = {10.1080/21645515.2017.1316912},
pmid = {28537465}
}
@article{lin411761,
title = {Geochemical constraints on the Hadean environment from mineral fingerprints of prokaryotes.},
author = {Novoselov AA, Silva D, Schneider J, Abrevaya XC, Chaffin MS, Serrano P, Navarro MS, Conti MJ, Souza Filho CR.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-04161-2},
pmid = {28638074}
}
@article{lin411178,
title = {Chase Assay of Protein Stability in Haloferax volcanii.},
author = {Fu X, Maupin-Furlow JA.},
journal = {Bio Protoc},
year = {2017},
doi = {10.21769/bioprotoc.2186},
pmid = {28660233}
}
@article{lin411209,
title = {Cell Surface Glycosylation Is Required for Efficient Mating of Haloferax volcanii.},
author = {Shalev Y, Turgeman-Grott I, Tamir A, Eichler J, Gophna U.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.01253},
pmid = {28725221}
}
@article{lin411381,
title = {Opsin-Mediated Inhibition of Bacterioruberin Synthesis in Halophilic Archaea.},
author = {Peck RF, Plesa AM, Graham SM, Angelini DR, Shaw EL.},
journal = {J Bacteriol},
year = {2017},
doi = {10.1128/jb.00303-17},
pmid = {28784816}
}
@article{lin411104,
title = {Assembling Glycan-Charged Dolichol Phosphates: Chemoenzymatic Synthesis of a Haloferax volcanii N-Glycosylation Pathway Intermediate.},
author = {Elharar Y, Podilapu AR, Guan Z, Kulkarni SS, Eichler J.},
journal = {Bioconjug Chem},
year = {2017},
doi = {10.1021/acs.bioconjchem.7b00436},
pmid = {28809486}
}
@article{lin411625,
title = {Non-Coding RNAs are Differentially Expressed by Nocardia brasiliensis in Vitro and in Experimental Actinomycetoma.},
author = {Cruz-Rabadan JS, Miranda-Rios J, Espin-Ocampo G, Mendez-Tovar LJ, Maya-Pineda HR, Hernandez-Hernandez F.},
journal = {Open Microbiol J},
year = {2017},
doi = {10.2174/1874285801711010112},
pmid = {28839491}
}
@article{lin411093,
title = {Characterization of a pentonolactonase involved in D-xylose and L-arabinose catabolism in the haloarchaeon Haloferax volcanii.},
author = {Sutter JM, Johnsen U, Schonheit P.},
journal = {FEMS Microbiol Lett},
year = {2017},
doi = {10.1093/femsle/fnx140},
pmid = {28854683}
}
@article{lin162859,
title = {Archaeal Persisters: Persister Cell Formation as a Stress Response in Haloferax volcanii.},
author = {Megaw J, Gilmore BF.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.01589},
pmid = {28871247}
}
@article{lin411780,
title = {Modeling protein quaternary structure of homo- and hetero-oligomers beyond binary interactions by homology.},
author = {Bertoni M, Kiefer F, Biasini M, Bordoli L, Schwede T.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-09654-8},
pmid = {28874689}
}
@article{lin411091,
title = {Mutations in the major gas vesicle protein GvpA and impacts on gas vesicle formation in Haloferax volcanii.},
author = {Knitsch R, Schneefeld M, Weitzel K, Pfeifer F, Pfeifer F.},
journal = {Mol Microbiol},
year = {2017},
doi = {10.1111/mmi.13833},
pmid = {28898511}
}
@article{lin411396,
title = {Laboratory Activity to Promote Student Understanding of UV Mutagenesis and DNA Repair.},
author = {Kouassi JE, Waldron I, Tripepi M, Pohlschroder M.},
journal = {J Microbiol Biol Educ},
year = {2017},
doi = {10.1128/jmbe.v18i1.1202},
pmid = {28912931}
}
@article{lin411434,
title = {Succinyl-CoA:Mesaconate CoA-Transferase and Mesaconyl-CoA Hydratase, Enzymes of the Methylaspartate Cycle in Haloarcula hispanica.},
author = {Borjian F, Johnsen U, Schonheit P, Berg IA.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.01683},
pmid = {28932214}
}
@article{lin411163,
title = {In vitro evaluation of archaeosome vehicles for transdermal vaccine delivery.},
author = {Jia Y, McCluskie MJ, Zhang D, Monette R, Iqbal U, Moreno M, Sauvageau J, Williams D, Deschatelets L, Jakubek ZJ, Krishnan L.},
journal = {J Liposome Res},
year = {2018},
doi = {10.1080/08982104.2017.1376683},
pmid = {28948854}
}
@article{lin411444,
title = {Cloning, recombinant production and crystallographic structure of Proliferating Cell Nuclear Antigen from radioresistant archaeon Thermococcus gammatolerans.},
author = {Venancio-Landeros AA, Rudino-Pinera E, Cardona-Felix CS.},
journal = {Biochem Biophys Rep},
year = {2016},
doi = {10.1016/j.bbrep.2016.08.004},
pmid = {28955957}
}
@article{lin411243,
title = {Characterization of Copy Number Control of Two Haloferax volcanii Replication Origins Using Deletion Mutants and Haloarchaeal Artificial Chromosomes.},
author = {Maurer S, Ludt K, Soppa J.},
journal = {J Bacteriol},
year = {2018},
doi = {10.1128/jb.00517-17},
pmid = {29038254}
}
@article{lin411145,
title = {In Vitro Antioxidant, Antihemolytic, and Anticancer Activity of the Carotenoids from Halophilic Archaea.},
author = {Hou J, Cui HL.},
journal = {Curr Microbiol},
year = {2018},
doi = {10.1007/s00284-017-1374-z},
pmid = {29038844}
}
@article{lin411105,
title = {Extreme halophilic alcohol dehydrogenase mediated highly efficient syntheses of enantiopure aromatic alcohols.},
author = {Alsafadi D, Alsalman S, Paradisi F.},
journal = {Org Biomol Chem},
year = {2017},
doi = {10.1039/c7ob02299a},
pmid = {29067382}
}
@article{lin411089,
title = {Co-expression and purification of the RadA recombinase with the RadB paralog from Haloferax volcanii yields heteromeric ring-like structures.},
author = {Patoli BB, Winter JA, Patoli AA, Delahay RM, Bunting KA.},
journal = {Microbiology (Reading)},
year = {2017},
doi = {10.1099/mic.0.000562},
pmid = {29072558}
}
@article{lin411523,
title = {tRNA-derived small RNAs: New players in genome protection against retrotransposons.},
author = {Martinez G.},
journal = {RNA Biol},
year = {2018},
doi = {10.1080/15476286.2017.1403000},
pmid = {29120263}
}
@article{lin411238,
title = {Engineering substrate promiscuity in halophilic alcohol dehydrogenase (HvADH2) by in silico design.},
author = {Cassidy J, Bruen L, Rosini E, Molla G, Pollegioni L, Paradisi F.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0187482},
pmid = {29190711}
}
@article{lin411309,
title = {Multiplex quantitative SILAC for analysis of archaeal proteomes: a case study of oxidative stress responses.},
author = {McMillan LJ, Hwang S, Farah RE, Koh J, Chen S, Maupin-Furlow JA.},
journal = {Environ Microbiol},
year = {2018},
doi = {10.1111/1462-2920.14014},
pmid = {29194950}
}
@article{lin411771,
title = {Gene deletions leading to a reduction in the number of cyclopentane rings in Sulfolobus acidocaldarius tetraether lipids.},
author = {Guan Z, Delago A, Nussbaum P, Meyer BH, Albers SV, Eichler J.},
journal = {FEMS Microbiol Lett},
year = {2018},
doi = {10.1093/femsle/fnx250},
pmid = {29211845}
}
@article{lin411614,
title = {Insights into the evolutionary conserved regulation of Rio ATPase activity.},
author = {Knuppel R, Christensen RH, Gray FC, Esser D, Strauss D, Medenbach J, Siebers B, MacNeill SA, LaRonde N, Ferreira-Cerca S.},
journal = {Nucleic Acids Res},
year = {2018},
doi = {10.1093/nar/gkx1236},
pmid = {29237037}
}
@article{lin411318,
title = {Growth phenotype analysis of heme synthetic enzymes in a halophilic archaeon, Haloferax volcanii.},
author = {Kosugi N, Araki T, Fujita J, Tanaka S, Fujiwara T.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0189913},
pmid = {29284023}
}
@article{lin411085,
title = {Haloferax volcanii Proteome Response to Deletion of a Rhomboid Protease Gene.},
author = {Costa MI, Cerletti M, Paggi RA, Trotschel C, De Castro RE, Poetsch A, Gimenez MI.},
journal = {J Proteome Res},
year = {2018},
doi = {10.1021/acs.jproteome.7b00530},
pmid = {29301397}
}
@article{lin411362,
title = {Structural and functional adaptation of Haloferax volcanii TFEalpha/beta.},
author = {Blombach F, Ausiannikava D, Figueiredo AM, Soloviev Z, Prentice T, Zhang M, Zhou N, Thalassinos K, Allers T, Werner F.},
journal = {Nucleic Acids Res},
year = {2018},
doi = {10.1093/nar/gkx1302},
pmid = {29309690}
}
@article{lin411452,
title = {Isolation, characterization and exploring biotechnological potential of halophilic archaea from salterns of western India.},
author = {Singh A, Singh AK.},
journal = {3 Biotech},
year = {2018},
doi = {10.1007/s13205-017-1072-3},
pmid = {29354356}
}
@article{lin411086,
title = {LonB Protease Is a Novel Regulator of Carotenogenesis Controlling Degradation of Phytoene Synthase in Haloferax volcanii.},
author = {Cerletti M, Paggi R, Troetschel C, Ferrari MC, Guevara CR, Albaum S, Poetsch A, De Castro R.},
journal = {J Proteome Res},
year = {2018},
doi = {10.1021/acs.jproteome.7b00809},
pmid = {29411617}
}
@article{lin411288,
title = {Transcriptional Landscape and Regulatory Roles of Small Noncoding RNAs in the Oxidative Stress Response of the Haloarchaeon Haloferax volcanii.},
author = {Gelsinger DR, DiRuggiero J.},
journal = {J Bacteriol},
year = {2018},
doi = {10.1128/jb.00779-17},
pmid = {29463600}
}
@article{lin411083,
title = {Conserved residues are critical for Haloferax volcanii archaeosortase catalytic activity: Implications for convergent evolution of the catalytic mechanisms of non-homologous sortases from archaea and bacteria.},
author = {Abdul Halim MF, Rodriguez R, Stoltzfus JD, Duggin IG, Pohlschroder M.},
journal = {Mol Microbiol},
year = {2018},
doi = {10.1111/mmi.13935},
pmid = {29465796}
}
@article{lin411233,
title = {Characterizing the DNA Methyltransferases of Haloferax volcanii via Bioinformatics, Gene Deletion, and SMRT Sequencing.},
author = {Ouellette M, Gogarten JP, Lajoie J, Makkay AM, Papke RT.},
journal = {Genes (Basel)},
year = {2018},
doi = {10.3390/genes9030129},
pmid = {29495512}
}
@article{lin411491,
title = {Exploring D-xylose oxidation in Saccharomyces cerevisiae through the Weimberg pathway.},
author = {Wasserstrom L, Portugal-Nunes D, Almqvist H, Sandstrom AG, Liden G, Gorwa-Grauslund MF.},
journal = {AMB Express},
year = {2018},
doi = {10.1186/s13568-018-0564-9},
pmid = {29508097}
}
@article{lin411796,
title = {A regulatory RNA is involved in RNA duplex formation and biofilm regulation in Sulfolobus acidocaldarius.},
author = {Orell A, Tripp V, Aliaga-Tobar V, Albers SV, Maracaja-Coutinho V, Randau L.},
journal = {Nucleic Acids Res},
year = {2018},
doi = {10.1093/nar/gky144},
pmid = {29529252}
}
@article{lin411688,
title = {Comparative Analysis of Surface Layer Glycoproteins and Genes Involved in Protein Glycosylation in the Genus Haloferax.},
author = {Shalev Y, Soucy SM, Papke RT, Gogarten JP, Eichler J, Gophna U.},
journal = {Genes (Basel)},
year = {2018},
doi = {10.3390/genes9030172},
pmid = {29558455}
}
@article{lin411773,
title = {The nuts and bolts of the Haloferax CRISPR-Cas system I-B.},
author = {Maier LK, Stachler AE, Brendel J, Stoll B, Fischer S, Haas KA, Schwarz TS, Alkhnbashi OS, Sharma K, Urlaub H, Backofen R, Gophna U, Marchfelder A.},
journal = {RNA Biol},
year = {2019},
doi = {10.1080/15476286.2018.1460994},
pmid = {29649958}
}
@article{lin411098,
title = {Haloquadratum walsbyi Yields a Versatile, NAD+/NADP+ Dual Affinity, Thermostable, Alcohol Dehydrogenase (HwADH).},
author = {Cassidy J, Paradisi F.},
journal = {Mol Biotechnol},
year = {2018},
doi = {10.1007/s12033-018-0083-6},
pmid = {29654471}
}
@article{lin411267,
title = {Evolution of Genome Architecture in Archaea: Spontaneous Generation of a New Chromosome in Haloferax volcanii.},
author = {Ausiannikava D, Mitchell L, Marriott H, Smith V, Hawkins M, Makarova KS, Koonin EV, Nieduszynski CA, Allers T.},
journal = {Mol Biol Evol},
year = {2018},
doi = {10.1093/molbev/msy075},
pmid = {29668953}
}
@article{lin411399,
title = {Divergent Roles of RPA Homologs of the Model Archaeon Halobacterium salinarum in Survival of DNA Damage.},
author = {Evans JJ, Gygli PE, McCaskill J, DeVeaux LC.},
journal = {Genes (Basel)},
year = {2018},
doi = {10.3390/genes9040223},
pmid = {29677156}
}
@article{lin411398,
title = {Reexploring 5-methoxyindole-2-carboxylic acid (MICA) as a potential antidiabetic agent.},
author = {Yan LJ.},
journal = {Diabetes Metab Syndr Obes},
year = {2018},
doi = {10.2147/dmso.s166485},
pmid = {29765243}
}
@article{lin411594,
title = {Modeling leaderless transcription and atypical genes results in more accurate gene prediction in prokaryotes.},
author = {Lomsadze A, Gemayel K, Tang S, Borodovsky M.},
journal = {Genome Res},
year = {2018},
doi = {10.1101/gr.230615.117},
pmid = {29773659}
}
@article{lin411673,
title = {Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution.},
author = {Meheust R, Watson AK, Lapointe FJ, Papke RT, Lopez P, Bapteste E.},
journal = {Genome Biol},
year = {2018},
doi = {10.1186/s13059-018-1454-9},
pmid = {29880023}
}
@article{lin411537,
title = {In vitro Analysis of Ubiquitin-like Protein Modification in Archaea.},
author = {Fu X, Adams Z, Maupin-Furlow JA.},
journal = {Bio Protoc},
year = {2018},
doi = {10.21769/bioprotoc.2845},
pmid = {29888297}
}
@article{lin411072,
title = {Proteomic Study of the Exponential-Stationary Growth Phase Transition in the Haloarchaea Natrialba magadii and Haloferax volcanii.},
author = {Cerletti M, Gimenez MI, Troetschel C, D' Alessandro C, Poetsch A, De Castro RE, Paggi RA, Paggi RA.},
journal = {Proteomics},
year = {2018},
doi = {10.1002/pmic.201800116},
pmid = {29888524}
}
@article{lin411331,
title = {GlpR Is a Direct Transcriptional Repressor of Fructose Metabolic Genes in Haloferax volcanii.},
author = {Martin JH, Sherwood Rawls K, Chan JC, Hwang S, Martinez-Pastor M, McMillan LJ, Prunetti L, Schmid AK, Maupin-Furlow JA.},
journal = {J Bacteriol},
year = {2018},
doi = {10.1128/jb.00244-18},
pmid = {29914986}
}
@article{lin411082,
title = {Significant Enhancement of Structural Stability of the Hyperhalophilic ADH from Haloferax volcanii via Entrapment on Metal Organic Framework Support.},
author = {Carucci C, Bruen L, Gascon V, Paradisi F, Magner E.},
journal = {Langmuir},
year = {2018},
doi = {10.1021/acs.langmuir.8b01037},
pmid = {29920206}
}
@article{lin411193,
title = {Influence of Origin Recognition Complex Proteins on the Copy Numbers of Three Chromosomes in Haloferax volcanii.},
author = {Ludt K, Soppa J.},
journal = {J Bacteriol},
year = {2018},
doi = {10.1128/jb.00161-18},
pmid = {29941422}
}
@article{lin411159,
title = {Everyone loves an underdog: metabolic engineering of the xylose oxidative pathway in recombinant microorganisms.},
author = {Valdehuesa KNG, Ramos KRM, Nisola GM, Banares AB, Cabulong RB, Lee WK, Liu H, Chung WJ.},
journal = {Appl Microbiol Biotechnol},
year = {2018},
doi = {10.1007/s00253-018-9186-z},
pmid = {30003296}
}
@article{lin411229,
title = {A Cobalamin Activity-Based Probe Enables Microbial Cell Growth and Finds New Cobalamin-Protein Interactions across Domains.},
author = {Rosnow JJ, Hwang S, Killinger BJ, Kim YM, Moore RJ, Lindemann SR, Maupin-Furlow JA, Wright AT.},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/aem.00955-18},
pmid = {30006406}
}
@article{lin411463,
title = {Evolutionary insights into Trm112-methyltransferase holoenzymes involved in translation between archaea and eukaryotes.},
author = {van Tran N, Muller L, Ross RL, Lestini R, Letoquart J, Ulryck N, Limbach PA, de Crecy-Lagard V, Cianferani S, Graille M.},
journal = {Nucleic Acids Res},
year = {2018},
doi = {10.1093/nar/gky638},
pmid = {30010922}
}
@article{lin411285,
title = {mRNA-specific translation regulation by a ribosome-associated ncRNA in Haloferax volcanii.},
author = {Wyss L, Waser M, Gebetsberger J, Zywicki M, Polacek N.},
journal = {Sci Rep},
year = {2018},
doi = {10.1038/s41598-018-30332-w},
pmid = {30131517}
}
@article{lin411687,
title = {Interaction of Haloarchaeal Gas Vesicle Proteins Determined by Split-GFP.},
author = {Winter K, Born J, Pfeifer F.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01897},
pmid = {30174663}
}
@article{lin411632,
title = {Internal RNAs overlapping coding sequences can drive the production of alternative proteins in archaea.},
author = {Ten-Caten F, Vencio RZN, Lorenzetti APR, Zaramela LS, Santana AC, Koide T.},
journal = {RNA Biol},
year = {2018},
doi = {10.1080/15476286.2018.1509661},
pmid = {30175688}
}
@article{lin411345,
title = {Snapshots of archaeal DNA replication and repair in living cells using super-resolution imaging.},
author = {Delpech F, Collien Y, Mahou P, Beaurepaire E, Myllykallio H, Lestini R.},
journal = {Nucleic Acids Res},
year = {2018},
doi = {10.1093/nar/gky829},
pmid = {30212908}
}
@article{lin411567,
title = {Sialic Acid-Like Sugars in Archaea: Legionaminic Acid Biosynthesis in the Halophile Halorubrum sp. PV6.},
author = {Zaretsky M, Roine E, Eichler J.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02133},
pmid = {30245679}
}
@article{lin411363,
title = {Salt-dependent regulation of archaellins in Haloarcula marismortui.},
author = {Syutkin AS, van Wolferen M, Surin AK, Albers SV, Pyatibratov MG, Fedorov OV, Quax TEF.},
journal = {Microbiologyopen},
year = {2019},
doi = {10.1002/mbo3.718},
pmid = {30270530}
}
@article{lin411078,
title = {Catalytic linkage between caspase activity and proteostasis in Archaea.},
author = {Seth-Pasricha M, Senn S, Sanman LE, Bogyo M, Nanda V, Bidle KA, Bidle KD.},
journal = {Environ Microbiol},
year = {2019},
doi = {10.1111/1462-2920.14456},
pmid = {30370585}
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@article{lin411666,
title = {Species Widely Distributed in Halophilic Archaea Exhibit Opsin-Mediated Inhibition of Bacterioruberin Biosynthesis.},
author = {Peck RF, Graham SM, Gregory AM.},
journal = {J Bacteriol},
year = {2019},
doi = {10.1128/jb.00576-18},
pmid = {30373756}
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@article{lin162870,
title = {Complete genome sequence of Bacillus velezensis ZY-1-1 reveals the genetic basis for its hemicellulosic/cellulosic substrate-inducible xylanase and cellulase activities.},
author = {Zhang ZY, Raza MF, Zheng Z, Zhang X, Dong X, Zhang H.},
journal = {3 Biotech},
year = {2018},
doi = {10.1007/s13205-018-1490-x},
pmid = {30402367}
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@article{lin411084,
title = {Denitrifying haloarchaea within the genus Haloferax display divergent respiratory phenotypes, with implications for their release of nitrogenous gases.},
author = {Torregrosa-Crespo J, Pire C, Martinez-Espinosa RM, Bergaust L.},
journal = {Environ Microbiol},
year = {2019},
doi = {10.1111/1462-2920.14474},
pmid = {30421557}
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@article{lin411051,
title = {Haloferax volcanii.},
author = {Pohlschroder M, Schulze S.},
journal = {Trends Microbiol},
year = {2019},
doi = {10.1016/j.tim.2018.10.004},
pmid = {30459094}
}
@article{lin411241,
title = {Molecular Factors of Hypochlorite Tolerance in the Hypersaline Archaeon Haloferax volcanii.},
author = {Gomez M, Leung W, Dantuluri S, Pillai A, Gani Z, Hwang S, McMillan LJ, Kiljunen S, Savilahti H, Maupin-Furlow JA.},
journal = {Genes (Basel)},
year = {2018},
doi = {10.3390/genes9110562},
pmid = {30463375}
}
@article{lin411064,
title = {Bacterioruberin extracts from a genetically modified hyperpigmented Haloferax volcanii strain: antioxidant activity and bioactive properties on sperm cells.},
author = {Zalazar L, Pagola P, Miro MV, Churio MS, Cerletti M, Martinez C, Iniesta-Cuerda M, Soler AJ, Cesari A, De Castro R.},
journal = {J Appl Microbiol},
year = {2019},
doi = {10.1111/jam.14160},
pmid = {30472814}
}
@article{lin411404,
title = {Pervasive acquisition of CRISPR memory driven by inter-species mating of archaea can limit gene transfer and influence speciation.},
author = {Turgeman-Grott I, Joseph S, Marton S, Eizenshtein K, Naor A, Soucy SM, Stachler AE, Shalev Y, Zarkor M, Reshef L, Altman-Price N, Marchfelder A, Gophna U.},
journal = {Nat Microbiol},
year = {2019},
doi = {10.1038/s41564-018-0302-8},
pmid = {30478289}
}
@article{lin411550,
title = {How Important Is Protein Diffusion in Prokaryotes?},
author = {Schavemaker PE, Boersma AJ, Poolman B.},
journal = {Front Mol Biosci},
year = {2018},
doi = {10.3389/fmolb.2018.00093},
pmid = {30483513}
}
@article{lin411792,
title = {Biofilm Formation by ica-Negative Ocular Isolates of Staphylococcus haemolyticus.},
author = {Panda S, Singh DV.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02687},
pmid = {30487781}
}
@article{lin411515,
title = {Sucrose Metabolism in Haloarchaea: Reassessment Using Genomics, Proteomics, and Metagenomics.},
author = {Williams TJ, Allen MA, Liao Y, Raftery MJ, Cavicchioli R.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.02935-18},
pmid = {30658981}
}
@article{lin411067,
title = {l-Rhamnose catabolism in archaea.},
author = {Reinhardt A, Johnsen U, Schonheit P.},
journal = {Mol Microbiol},
year = {2019},
doi = {10.1111/mmi.14213},
pmid = {30707467}
}
@article{lin411378,
title = {tRNA Modification Profiles and Codon-Decoding Strategies in Methanocaldococcus jannaschii.},
author = {Yu N, Jora M, Solivio B, Thakur P, Acevedo-Rocha CG, Randau L, de Crecy-Lagard V, Addepalli B, Limbach PA.},
journal = {J Bacteriol},
year = {2019},
doi = {10.1128/jb.00690-18},
pmid = {30745370}
}
@article{lin411624,
title = {Conversion of Mevalonate 3-Kinase into 5-Phosphomevalonate 3-Kinase by Single Amino Acid Mutations.},
author = {Motoyama K, Sobue F, Kawaide H, Yoshimura T, Hemmi H.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.00256-19},
pmid = {30824437}
}
@article{lin411202,
title = {Haloferax volcanii as immobilised whole cell biocatalyst: new applications for halophilic systems.},
author = {Haque RU, Paradisi F, Allers T.},
journal = {Appl Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s00253-019-09725-y},
pmid = {30877354}
}
@article{lin411184,
title = {Cyclic nucleotides in archaea: Cyclic di-AMP in the archaeon Haloferax volcanii and its putative role.},
author = {Braun F, Thomalla L, van der Does C, Quax TEF, Allers T, Kaever V, Albers SV.},
journal = {Microbiologyopen},
year = {2019},
doi = {10.1002/mbo3.829},
pmid = {30884174}
}
@article{lin162867,
title = {Assays for ubiquitin-like protein ligation and proteasome function in archaea.},
author = {Fu X, Adams Z, Maupin-Furlow J.},
journal = {Methods Enzymol},
year = {2019},
doi = {10.1016/bs.mie.2018.12.036},
pmid = {30910020}
}
@article{lin411756,
title = {Selection-free markerless genome manipulations in the polyploid bacterium Thermus thermophilus.},
author = {Li H.},
journal = {3 Biotech},
year = {2019},
doi = {10.1007/s13205-019-1682-z},
pmid = {30944795}
}
@article{lin411292,
title = {The Primary Antisense Transcriptome of Halobacterium salinarum NRC-1.},
author = {de Almeida JPP, Vencio RZN, Lorenzetti APR, Caten FT, Gomes-Filho JV, Koide T.},
journal = {Genes (Basel)},
year = {2019},
doi = {10.3390/genes10040280},
pmid = {30959844}
}
@article{lin411566,
title = {In vitro reconstitution and characterisation of the oxidative D-xylose pathway for production of organic acids and alcohols.},
author = {Boer H, Andberg M, Pylkkanen R, Maaheimo H, Koivula A.},
journal = {AMB Express},
year = {2019},
doi = {10.1186/s13568-019-0768-7},
pmid = {30972503}
}
@article{lin411263,
title = {Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq.},
author = {Laass S, Monzon VA, Kliemt J, Hammelmann M, Pfeiffer F, Forstner KU, Soppa J.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0215986},
pmid = {31039177}
}
@article{lin411487,
title = {Positioning of the Motility Machinery in Halophilic Archaea.},
author = {Li Z, Kinosita Y, Rodriguez-Franco M, Nussbaum P, Braun F, Delpech F, Quax TEF, Albers SV.},
journal = {mBio},
year = {2019},
doi = {10.1128/mbio.00377-19},
pmid = {31064826}
}
@article{lin411196,
title = {Limited Cross-Complementation Between Haloferax volcanii PilB1-C1 and PilB3-C3 Paralogs.},
author = {Legerme G, Pohlschroder M.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.00700},
pmid = {31068907}
}
@article{lin411129,
title = {Environmental factors influence the Haloferax volcanii S-layer protein structure.},
author = {Rodrigues-Oliveira T, Souza AA, Kruger R, Schuster B, Maria de Freitas S, Kyaw CM.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0216863},
pmid = {31075115}
}
@article{lin411203,
title = {Several One-Domain Zinc Finger µ-Proteins of Haloferax Volcanii Are Important for Stress Adaptation, Biofilm Formation, and Swarming.},
author = {Nagel C, Machulla A, Zahn S, Soppa J.},
journal = {Genes (Basel)},
year = {2019},
doi = {10.3390/genes10050361},
pmid = {31083437}
}
@article{lin411405,
title = {Rhodanese-Like Domain Protein UbaC and Its Role in Ubiquitin-Like Protein Modification and Sulfur Mobilization in Archaea.},
author = {Hepowit NL, Maupin-Furlow JA.},
journal = {J Bacteriol},
year = {2019},
doi = {10.1128/jb.00254-19},
pmid = {31085691}
}
@article{lin411047,
title = {Uptake of D-xylose and L-arabinose in Haloferax volcanii involves an ABC transporter of the CUT1 subfamily.},
author = {Johnsen U, Ortjohann M, Sutter JM, Geweke S, Schonheit P.},
journal = {FEMS Microbiol Lett},
year = {2019},
doi = {10.1093/femsle/fnz089},
pmid = {31089701}
}
@article{lin411376,
title = {Characterisation of a solvent-tolerant haloarchaeal (R)-selective transaminase isolated from a Triassic period salt mine.},
author = {Kelly SA, Magill DJ, Megaw J, Skvortsov T, Allers T, McGrath JW, Allen CCR, Moody TS, Gilmore BF.},
journal = {Appl Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s00253-019-09806-y},
pmid = {31123770}
}
@article{lin411408,
title = {Division plane placement in pleomorphic archaea is dynamically coupled to cell shape.},
author = {Walsh JC, Angstmann CN, Bisson-Filho AW, Garner EC, Duggin IG, Curmi PMG.},
journal = {Mol Microbiol},
year = {2019},
doi = {10.1111/mmi.14316},
pmid = {31136034}
}
@article{lin411057,
title = {CRISPRi as an efficient tool for gene repression in archaea.},
author = {Stachler AE, Schwarz TS, Schreiber S, Marchfelder A.},
journal = {Methods},
year = {2020},
doi = {10.1016/j.ymeth.2019.05.023},
pmid = {31150759}
}
@article{lin411034,
title = {Solution Structure and Dynamics of the Small Protein HVO_2922 from Haloferax volcanii.},
author = {Kubatova N, Jonker HRA, Saxena K, Richter C, Vogel V, Schreiber S, Marchfelder A, Schwalbe H.},
journal = {Chembiochem},
year = {2020},
doi = {10.1002/cbic.201900085},
pmid = {31161645}
}
@article{lin411063,
title = {Polyploidy in halophilic archaea: regulation, evolutionary advantages, and gene conversion.},
author = {Ludt K, Soppa J.},
journal = {Biochem Soc Trans},
year = {2019},
doi = {10.1042/bst20190256},
pmid = {31189733}
}
@article{lin411455,
title = {A Haloarchaeal Small Regulatory RNA (sRNA) Is Essential for Rapid Adaptation to Phosphate Starvation Conditions.},
author = {Kliemt J, Jaschinski K, Soppa J.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.01219},
pmid = {31231327}
}
@article{lin411054,
title = {Homologs of aquifex aeolicus protein-only RNase P are not the major RNase P activities in the archaea haloferax volcanii and methanosarcina mazei.},
author = {Schwarz TS, Waber NB, Feyh R, Weidenbach K, Schmitz RA, Marchfelder A, Hartmann RK.},
journal = {IUBMB Life},
year = {2019},
doi = {10.1002/iub.2122},
pmid = {31283101}
}
@article{lin411778,
title = {Coarse-grain simulations on NMR conformational ensembles highlight functional residues in proteins.},
author = {Sacquin-Mora S.},
journal = {J R Soc Interface},
year = {2019},
doi = {10.1098/rsif.2019.0075},
pmid = {31288649}
}
@article{lin411576,
title = {Unusual Phosphoenolpyruvate (PEP) Synthetase-Like Protein Crucial to Enhancement of Polyhydroxyalkanoate Accumulation in Haloferax mediterranei Revealed by Dissection of PEP-Pyruvate Interconversion Mechanism.},
author = {Chen J, Mitra R, Zhang S, Zuo Z, Lin L, Zhao D, Xiang H, Han J.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.00984-19},
pmid = {31350314}
}
@article{lin411794,
title = {Defining the influence of Rad51 and Dmc1 lineage-specific amino acids on genetic recombination.},
author = {Steinfeld JB, Belan O, Kwon Y, Terakawa T, Al-Zain A, Smith MJ, Crickard JB, Qi Z, Zhao W, Rothstein R, Symington LS, Sung P, Boulton SJ, Greene EC.},
journal = {Genes Dev},
year = {2019},
doi = {10.1101/gad.328062.119},
pmid = {31371435}
}
@article{lin411482,
title = {Insights from the salt bridge analysis of malate dehydrogenase from H. salinarum and E.coli.},
author = {Bandyopadhyay AK, Islam RNU, Mitra D, Banerjee S, Yasmeen S, Goswami A.},
journal = {Bioinformation},
year = {2019},
doi = {10.6026/97320630015095},
pmid = {31435155}
}
@article{lin411520,
title = {Translational coupling via termination-reinitiation in archaea and bacteria.},
author = {Huber M, Faure G, Laass S, Kolbe E, Seitz K, Wehrheim C, Wolf YI, Koonin EV, Soppa J.},
journal = {Nat Commun},
year = {2019},
doi = {10.1038/s41467-019-11999-9},
pmid = {31488843}
}
@article{lin411037,
title = {The Response of Haloferax volcanii to Salt and Temperature Stress: A Proteome Study by Label-Free Mass Spectrometry.},
author = {Jevtic Z, Stoll B, Pfeiffer F, Sharma K, Urlaub H, Marchfelder A, Lenz C.},
journal = {Proteomics},
year = {2019},
doi = {10.1002/pmic.201800491},
pmid = {31502396}
}
@article{lin411745,
title = {Large-scale sequence comparisons with sourmash.},
author = {Pierce NT, Irber L, Reiter T, Brooks P, Brown CT.},
journal = {F1000Res},
year = {2019},
doi = {10.12688/f1000research.19675.1},
pmid = {31508216}
}
@article{lin411590,
title = {A Modular Vector Toolkit with a Tailored Set of Thermosensors To Regulate Gene Expression in Thermus thermophilus.},
author = {Verdu C, Sanchez E, Ortega C, Hidalgo A, Berenguer J, Mencia M, Mencia M.},
journal = {ACS Omega},
year = {2019},
doi = {10.1021/acsomega.9b02107},
pmid = {31528818}
}
@article{lin411211,
title = {Gene Expression of Haloferax volcanii on Intermediate and Abundant Sources of Fixed Nitrogen.},
author = {Hwang S, Chavarria NE, Hackley RK, Schmid AK, Maupin-Furlow JA.},
journal = {Int J Mol Sci},
year = {2019},
doi = {10.3390/ijms20194784},
pmid = {31561502}
}
@article{lin411683,
title = {The MetaCyc database of metabolic pathways and enzymes - a 2019 update.},
author = {Caspi R, Billington R, Keseler IM, Kothari A, Krummenacker M, Midford PE, Ong WK, Paley S, Subhraveti P, Karp PD.},
journal = {Nucleic Acids Res},
year = {2020},
doi = {10.1093/nar/gkz862},
pmid = {31586394}
}
@article{lin411763,
title = {Characterization and repurposing of the endogenous Type I-F CRISPR-Cas system of Zymomonas mobilis for genome engineering.},
author = {Zheng Y, Han J, Wang B, Hu X, Li R, Shen W, Ma X, Ma L, Yi L, Yang S, Peng W.},
journal = {Nucleic Acids Res},
year = {2019},
doi = {10.1093/nar/gkz940},
pmid = {31647102}
}
@article{lin411557,
title = {Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter diazotrophicus PAL5.},
author = {Ramirez-Nava EJ, Ortega-Cuellar D, Gonzalez-Valdez A, Castillo-Rodriguez RA, Ponce-Soto GY, Hernandez-Ochoa B, Cardenas-Rodriguez N, Martinez-Rosas V, Morales-Luna L, Serrano-Posada H, Sierra-Palacios E, Arreguin-Espinosa R, Cuevas-Cruz M, Rocha-Ramirez LM, Perez de la Cruz V, Marcial-Quino J, Gomez-Manzo S.},
journal = {Int J Mol Sci},
year = {2019},
doi = {10.3390/ijms20215279},
pmid = {31652968}
}
@article{lin411239,
title = {Transfer RNA-Derived Small Non-Coding RNA: Dual Regulator of Protein Synthesis.},
author = {Kim HK.},
journal = {Mol Cells},
year = {2019},
doi = {10.14348/molcells.2019.0214},
pmid = {31656062}
}
@article{lin411062,
title = {Denovo designing: a novel signal peptide for tat translocation pathway to transport activin A to the periplasmic space of E. coli.},
author = {Zandsalimi F, Hajihassan Z, Hamidi R.},
journal = {Biotechnol Lett},
year = {2020},
doi = {10.1007/s10529-019-02752-9},
pmid = {31679097}
}
@article{lin411613,
title = {The DNA-binding protein HTa from Thermoplasma acidophilum is an archaeal histone analog.},
author = {Hocher A, Rojec M, Swadling JB, Esin A, Warnecke T.},
journal = {Elife},
year = {2019},
doi = {10.7554/elife.52542},
pmid = {31710291}
}
@article{lin411142,
title = {d-Ribose Catabolism in Archaea: Discovery of a Novel Oxidative Pathway in Haloarcula Species.},
author = {Johnsen U, Sutter JM, Reinhardt A, Pickl A, Wang R, Xiang H, Schonheit P.},
journal = {J Bacteriol},
year = {2020},
doi = {10.1128/jb.00608-19},
pmid = {31712277}
}
@article{lin411407,
title = {Architecture and modular assembly of Sulfolobus S-layers revealed by electron cryotomography.},
author = {Gambelli L, Meyer BH, McLaren M, Sanders K, Quax TEF, Gold VAM, Albers SV, Daum B.},
journal = {Proc Natl Acad Sci U S A},
year = {2019},
doi = {10.1073/pnas.1911262116},
pmid = {31767763}
}
@article{lin411038,
title = {Bioinformatic and genetic characterization of three genes localized adjacent to the major replication origin of Haloferax volcanii.},
author = {Wolters M, Borst A, Pfeiffer F, Soppa J.},
journal = {FEMS Microbiol Lett},
year = {2019},
doi = {10.1093/femsle/fnz238},
pmid = {31769790}
}
@article{lin411275,
title = {A versatile cis-acting element reporter system to study the function, maturation and stability of ribosomal RNA mutants in archaea.},
author = {Juttner M, Weiss M, Ostheimer N, Reglin C, Kern M, Knuppel R, Ferreira-Cerca S.},
journal = {Nucleic Acids Res},
year = {2020},
doi = {10.1093/nar/gkz1156},
pmid = {31828323}
}
@article{lin411293,
title = {Haloferax volcanii for biotechnology applications: challenges, current state and perspectives.},
author = {Haque RU, Paradisi F, Allers T.},
journal = {Appl Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s00253-019-10314-2},
pmid = {31863144}
}
@article{lin411734,
title = {Identification of the 3-amino-3-carboxypropyl (acp) transferase enzyme responsible for acp3U formation at position 47 in Escherichia coli tRNAs.},
author = {Meyer B, Immer C, Kaiser S, Sharma S, Yang J, Watzinger P, Weiss L, Kotter A, Helm M, Seitz HM, Kotter P, Kellner S, Entian KD, Wohnert J.},
journal = {Nucleic Acids Res},
year = {2020},
doi = {10.1093/nar/gkz1191},
pmid = {31863583}
}
@article{lin411554,
title = {A Novel Noncoding RNA dsr11 Involved in Heat Stress Tolerance in Deinococcus radiodurans.},
author = {Xue D, Chen Y, Li J, Han J, Zhou Z, Zhang W, Chen M, Lin M, Ongena M, Wang J.},
journal = {Biomolecules},
year = {2019},
doi = {10.3390/biom10010022},
pmid = {31877996}
}
@article{lin411040,
title = {In Vivo RNA Chemical Footprinting Analysis in Archaea.},
author = {Knuppel R, Fenk M, Juttner M, Ferreira-Cerca S.},
journal = {Methods Mol Biol},
year = {2020},
doi = {10.1007/978-1-0716-0231-7_12},
pmid = {31889259}
}
@article{lin411589,
title = {The presence of the ACA box in archaeal H/ACA guide RNAs promotes atypical pseudouridylation.},
author = {Majumder M, Mukhopadhyay S, Kharel P, Gupta R.},
journal = {RNA},
year = {2020},
doi = {10.1261/rna.073734.119},
pmid = {31919243}
}
@article{lin411601,
title = {Arabidopsis tRNA-derived fragments as potential modulators of translation.},
author = {Lalande S, Merret R, Salinas-Giege T, Drouard L.},
journal = {RNA Biol},
year = {2020},
doi = {10.1080/15476286.2020.1722514},
pmid = {31994438}
}
@article{lin411234,
title = {Identification of RNA 3´ ends and termination sites in Haloferax volcanii.},
author = {Berkemer SJ, Maier LK, Amman F, Bernhart SH, Wortz J, Markle P, Pfeiffer F, Stadler PF, Marchfelder A.},
journal = {RNA Biol},
year = {2020},
doi = {10.1080/15476286.2020.1723328},
pmid = {32041469}
}
@article{lin411028,
title = {D-galactose catabolism in archaea: operation of the DeLey-Doudoroff pathway in Haloferax volcanii.},
author = {Tastensen JB, Johnsen U, Reinhardt A, Ortjohann M, Schonheit P.},
journal = {FEMS Microbiol Lett},
year = {2020},
doi = {10.1093/femsle/fnaa029},
pmid = {32055827}
}
@article{lin411751,
title = {Surviving salt fluctuations: stress and recovery in Halobacterium salinarum, an extreme halophilic Archaeon.},
author = {Vauclare P, Natali F, Kleman JP, Zaccai G, Franzetti B.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-59681-1},
pmid = {32094390}
}
@article{lin411213,
title = {Deciphering Pathways for Carotenogenesis in Haloarchaea.},
author = {Giani M, Miralles-Robledillo JM, Peiro G, Pire C, Martinez-Espinosa RM.},
journal = {Molecules},
year = {2020},
doi = {10.3390/molecules25051197},
pmid = {32155882}
}
@article{lin411364,
title = {Haloterrigena sp. Strain SGH1, a Bacterioruberin-Rich, Perchlorate-Tolerant Halophilic Archaeon Isolated From Halite Microbial Communities, Atacama Desert, Chile.},
author = {Flores N, Hoyos S, Venegas M, Galetovic A, Zuniga LM, Fabrega F, Paredes B, Salazar-Ardiles C, Vilo C, Ascaso C, Wierzchos J, Souza-Egipsy V, Araya JE, Batista-Garcia RA, Gomez-Silva B.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.00324},
pmid = {32194531}
}
@article{lin411305,
title = {Lipid Anchoring of Archaeosortase Substrates and Midcell Growth in Haloarchaea.},
author = {Abdul-Halim MF, Schulze S, DiLucido A, Pfeiffer F, Bisson Filho AW, Pohlschroder M.},
journal = {mBio},
year = {2020},
doi = {10.1128/mbio.00349-20},
pmid = {32209681}
}
@article{lin411572,
title = {Probabilistic model based on circular statistics for quantifying coverage depth dynamics originating from DNA replication.},
author = {Suzuki S, Yamada T.},
journal = {PeerJ},
year = {2020},
doi = {10.7717/peerj.8722},
pmid = {32257635}
}
@article{lin411383,
title = {Novel Genes Involved in Resistance to Both Ultraviolet Radiation and Perchlorate From the Metagenomes of Hypersaline Environments.},
author = {Lamprecht-Grandio M, Cortesao M, Mirete S, de la Camara MB, de Figueras CG, Perez-Pantoja D, White JJ, Farias ME, Rossello-Mora R, Gonzalez-Pastor JE.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.00453},
pmid = {32292392}
}
@article{lin411571,
title = {Genome-Wide Analysis of Sugar Transporters Identifies the gtsA Gene for Glucose Transportation in Pseudomonas stutzeri A1501.},
author = {Liu Y, Shang L, Zhan Y, Lin M, Liu Z, Yan Y.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8040592},
pmid = {32325908}
}
@article{lin411441,
title = {Interaction of two strongly divergent archaellins stabilizes the structure of the Halorubrum archaellum.},
author = {Pyatibratov MG, Syutkin AS, Quax TEF, Melnik TN, Papke RT, Gogarten JP, Kireev II, Surin AK, Beznosov SN, Galeva AV, Fedorov OV.},
journal = {Microbiologyopen},
year = {2020},
doi = {10.1002/mbo3.1047},
pmid = {32352651}
}
@article{lin411343,
title = {A New Record for Microbial Perchlorate Tolerance: Fungal Growth in NaClO4 Brines and its Implications for Putative Life on Mars.},
author = {Heinz J, Krahn T, Schulze-Makuch D.},
journal = {Life (Basel)},
year = {2020},
doi = {10.3390/life10050053},
pmid = {32353964}
}
@article{lin411369,
title = {Ribosome profiling in archaea reveals leaderless translation, novel translational initiation sites, and ribosome pausing at single codon resolution.},
author = {Gelsinger DR, Dallon E, Reddy R, Mohammad F, Buskirk AR, DiRuggiero J.},
journal = {Nucleic Acids Res},
year = {2020},
doi = {10.1093/nar/gkaa304},
pmid = {32382758}
}
@article{lin162869,
title = {Enzymatic and genetic characterization of lignin depolymerization by Streptomyces sp. S6 isolated from a tropical environment.},
author = {Riyadi FA, Tahir AA, Yusof N, Sabri NSA, Noor MJMM, Akhir FNMD, Othman N, Zakaria Z, Hara H.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-64817-4},
pmid = {32385385}
}
@article{lin411787,
title = {Haloferax mediterranei, an Archaeal Model for Denitrification in Saline Systems, Characterized Through Integrated Physiological and Transcriptional Analyses.},
author = {Torregrosa-Crespo J, Pire C, Bergaust L, Martinez-Espinosa RM.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.00768},
pmid = {32390995}
}
@article{lin411670,
title = {Reversal of Regioselectivity in Zinc-Dependent Medium-Chain Alcohol Dehydrogenase from Rhodococcus erythropolis toward Octanone Derivatives.},
author = {Dhoke GV, Ensari Y, Hacibaloglu DY, Gartner A, Ruff AJ, Bocola M, Davari MD.},
journal = {Chembiochem},
year = {2020},
doi = {10.1002/cbic.202000247},
pmid = {32415803}
}
@article{lin411295,
title = {The switch complex ArlCDE connects the chemotaxis system and the archaellum.},
author = {Li Z, Rodriguez-Franco M, Albers SV, Quax TEF.},
journal = {Mol Microbiol},
year = {2020},
doi = {10.1111/mmi.14527},
pmid = {32416640}
}
@article{lin411680,
title = {Emerging views of genome organization in Archaea.},
author = {Takemata N, Bell SD.},
journal = {J Cell Sci},
year = {2020},
doi = {10.1242/jcs.243782},
pmid = {32423947}
}
@article{lin411017,
title = {Synthesis, characterization and kinetic study of silver and gold nanoparticles produced by the archaeon Haloferax volcanii.},
author = {Costa MI, Alvarez-Cerimedo MS, Urquiza D, Ayude MA, Hoppe CE, Fasce DP, De Castro RE, Gimenez MI.},
journal = {J Appl Microbiol},
year = {2020},
doi = {10.1111/jam.14726},
pmid = {32463948}
}
@article{lin162866,
title = {Estimation of the Genome-Wide Mutation Rate and Spectrum in the Archaeal Species Haloferax volcanii.},
author = {Kucukyildirim S, Behringer M, Williams EM, Doak TG, Lynch M.},
journal = {Genetics},
year = {2020},
doi = {10.1534/genetics.120.303299},
pmid = {32513815}
}
@article{lin411500,
title = {The Archaeal Proteome Project advances knowledge about archaeal cell biology through comprehensive proteomics.},
author = {Schulze S, Adams Z, Cerletti M, De Castro R, Ferreira-Cerca S, Fufezan C, Gimenez MI, Hippler M, Jevtic Z, Knuppel R, Legerme G, Lenz C, Marchfelder A, Maupin-Furlow J, Paggi RA, Pfeiffer F, Poetsch A, Urlaub H, Pohlschroder M.},
journal = {Nat Commun},
year = {2020},
doi = {10.1038/s41467-020-16784-7},
pmid = {32561711}
}
@article{lin411485,
title = {Role of RadA and DNA Polymerases in Recombination-Associated DNA Synthesis in Hyperthermophilic Archaea.},
author = {Hogrel G, Lu Y, Alexandre N, Bosse A, Dulermo R, Ishino S, Ishino Y, Flament D.},
journal = {Biomolecules},
year = {2020},
doi = {10.3390/biom10071045},
pmid = {32674430}
}
@article{lin411746,
title = {Mechanistic insights into Lhr helicase function in DNA repair.},
author = {Buckley RJ, Kramm K, Cooper CDO, Grohmann D, Bolt EL.},
journal = {Biochem J},
year = {2020},
doi = {10.1042/bcj20200379},
pmid = {32706021}
}
@article{lin411139,
title = {Regulated Iron Siderophore Production of the Halophilic Archaeon Haloferax volcanii.},
author = {Niessen N, Soppa J.},
journal = {Biomolecules},
year = {2020},
doi = {10.3390/biom10071072},
pmid = {32709147}
}
@article{lin411302,
title = {Adaptation induced by self-targeting in a type I-B CRISPR-Cas system.},
author = {Stachler AE, Wortz J, Alkhnbashi OS, Turgeman-Grott I, Smith R, Allers T, Backofen R, Gophna U, Marchfelder A.},
journal = {J Biol Chem},
year = {2020},
doi = {10.1074/jbc.ra120.014030},
pmid = {32723866}
}
@article{lin411138,
title = {A bioluminescent reporter for the halophilic archaeon Haloferax volcanii.},
author = {Davis CR, Johnson CH, Robertson JB.},
journal = {Extremophiles},
year = {2020},
doi = {10.1007/s00792-020-01193-x},
pmid = {32749548}
}
@article{lin411189,
title = {Pentose degradation in archaea: Halorhabdus species degrade D-xylose, L-arabinose and D-ribose via bacterial-type pathways.},
author = {Sutter JM, Johnsen U, Reinhardt A, Schonheit P.},
journal = {Extremophiles},
year = {2020},
doi = {10.1007/s00792-020-01192-y},
pmid = {32761262}
}
@article{lin411790,
title = {The proteasome controls ESCRT-III-mediated cell division in an archaeon.},
author = {Tarrason Risa G, Hurtig F, Bray S, Hafner AE, Harker-Kirschneck L, Faull P, Davis C, Papatziamou D, Mutavchiev DR, Fan C, Meneguello L, Arashiro Pulschen A, Dey G, Culley S, Kilkenny M, Souza DP, Pellegrini L, de Bruin RAM, Henriques R, Snijders AP, Saric A, Lindas AC, Robinson NP, Baum B.},
journal = {Science},
year = {2020},
doi = {10.1126/science.aaz2532},
pmid = {32764038}
}
@article{lin411575,
title = {The Ribbon-Helix-Helix Domain Protein CdrS Regulates the Tubulin Homolog ftsZ2 To Control Cell Division in Archaea.},
author = {Darnell CL, Zheng J, Wilson S, Bertoli RM, Bisson-Filho AW, Garner EC, Schmid AK.},
journal = {mBio},
year = {2020},
doi = {10.1128/mbio.01007-20},
pmid = {32788376}
}
@article{lin411649,
title = {Interplay between Position-Dependent Codon Usage Bias and Hydrogen Bonding at the 5' End of ORFeomes.},
author = {Villada JC, Duran MF, Lee PKH.},
journal = {mSystems},
year = {2020},
doi = {10.1128/msystems.00613-20},
pmid = {32788408}
}
@article{lin162865,
title = {Protein Splicing Activity of the Haloferax volcanii PolB-c Intein Is Sensitive to Homing Endonuclease Domain Mutations.},
author = {Robinzon S, Cawood AR, Ruiz MA, Gophna U, Altman-Price N, Mills KV.},
journal = {Biochemistry},
year = {2020},
doi = {10.1021/acs.biochem.0c00512},
pmid = {32822531}
}
@article{lin411772,
title = {A CRISPRi-dCas9 System for Archaea and Its Use To Examine Gene Function during Nitrogen Fixation by Methanosarcina acetivorans.},
author = {Dhamad AE, Lessner DJ.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.01402-20},
pmid = {32826220}
}
@article{lin411013,
title = {Biological functions, genetic and biochemical characterization, and NMR structure determination of the small zinc finger protein HVO_2753 from Haloferax volcanii.},
author = {Zahn S, Kubatova N, Pyper DJ, Cassidy L, Saxena K, Tholey A, Schwalbe H, Soppa J.},
journal = {FEBS J},
year = {2021},
doi = {10.1111/febs.15559},
pmid = {32905660}
}
@article{lin411192,
title = {From Gene to Function: A Safe Laboratory Exercise Promoting the Learning of the Central Dogma of Biology for the Undergraduate Biology Curriculum.},
author = {Tripepi M, Clear M, Bondi JL, Brunelli E, Berardi A.},
journal = {J Microbiol Biol Educ},
year = {2020},
doi = {10.1128/jmbe.v21i2.2131},
pmid = {32913489}
}
@article{lin411789,
title = {Nitrogen as the major factor influencing gene expression in Yarrowia lipolytica.},
author = {Hapeta P, Kerkhoven EJ, Lazar Z.},
journal = {Biotechnol Rep (Amst)},
year = {2020},
doi = {10.1016/j.btre.2020.e00521},
pmid = {32923379}
}
@article{lin411476,
title = {Comparative CRISPR type III-based knockdown of essential genes in hyperthermophilic Sulfolobales and the evasion of lethal gene silencing.},
author = {Zink IA, Fouqueau T, Tarrason Risa G, Werner F, Baum B, Blasi U, Schleper C.},
journal = {RNA Biol},
year = {2021},
doi = {10.1080/15476286.2020.1813411},
pmid = {32957821}
}
@article{lin411475,
title = {Antioxidant, Antimicrobial, and Bioactive Potential of Two New Haloarchaeal Strains Isolated from Odiel Salterns (Southwest Spain).},
author = {Gomez-Villegas P, Vigara J, Vila M, Varela J, Barreira L, Leon R.},
journal = {Biology (Basel)},
year = {2020},
doi = {10.3390/biology9090298},
pmid = {32962162}
}
@article{lin411679,
title = {Characterization of the Methanomicrobial Archaeal RNase Zs for Processing the CCA-Containing tRNA Precursors.},
author = {Wang X, Gu X, Li J, Yue L, Li D, Dong X.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01851},
pmid = {32982996}
}
@article{lin411313,
title = {Biochemical and Taxonomic Characterization of Novel Haloarchaeal Strains and Purification of the Recombinant Halotolerant alpha-Amylase Discovered in the Isolate.},
author = {Verma DK, Vasudeva G, Sidhu C, Pinnaka AK, Prasad SE, Thakur KG.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.02082},
pmid = {32983058}
}
@article{lin411477,
title = {Comparative patterns of modified nucleotides in individual tRNA species from a mesophilic and two thermophilic archaea.},
author = {Wolff P, Villette C, Zumsteg J, Heintz D, Antoine L, Chane-Woon-Ming B, Droogmans L, Grosjean H, Westhof E.},
journal = {RNA},
year = {2020},
doi = {10.1261/rna.077537.120},
pmid = {32994183}
}
@article{lin411170,
title = {Motile ghosts of the halophilic archaeon, Haloferax volcanii.},
author = {Kinosita Y, Mikami N, Li Z, Braun F, Quax TEF, van der Does C, Ishmukhametov R, Albers SV, Berry RM.},
journal = {Proc Natl Acad Sci U S A},
year = {2020},
doi = {10.1073/pnas.2009814117},
pmid = {33051299}
}
@article{lin411342,
title = {Microbial electroactive biofilms dominated by Geoalkalibacter spp. from a highly saline-alkaline environment.},
author = {Yadav S, Patil SA.},
journal = {NPJ Biofilms Microbiomes},
year = {2020},
doi = {10.1038/s41522-020-00147-7},
pmid = {33051461}
}
@article{lin411156,
title = {Understanding High-Salt and Cold Adaptation of a Polyextremophilic Enzyme.},
author = {Karan R, Mathew S, Muhammad R, Bautista DB, Vogler M, Eppinger J, Oliva R, Cavallo L, Arold ST, Rueping M.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8101594},
pmid = {33081237}
}
@article{lin411035,
title = {An Oscillating MinD Protein Determines the Cellular Positioning of the Motility Machinery in Archaea.},
author = {Nussbaum P, Ithurbide S, Walsh JC, Patro M, Delpech F, Rodriguez-Franco M, Curmi PMG, Duggin IG, Quax TEF, Albers SV.},
journal = {Curr Biol},
year = {2020},
doi = {10.1016/j.cub.2020.09.073},
pmid = {33125862}
}
@article{lin411736,
title = {Heavily Armed Ancestors: CRISPR Immunity and Applications in Archaea with a Comparative Analysis of CRISPR Types in Sulfolobales.},
author = {Zink IA, Wimmer E, Schleper C.},
journal = {Biomolecules},
year = {2020},
doi = {10.3390/biom10111523},
pmid = {33172134}
}
@article{lin411352,
title = {Haloferax volcanii-a model archaeon for studying DNA replication and repair.},
author = {Perez-Arnaiz P, Dattani A, Smith V, Allers T.},
journal = {Open Biol},
year = {2020},
doi = {10.1098/rsob.200293},
pmid = {33259746}
}
@article{lin411568,
title = {The Exploration of Novel Regulatory Relationships Drives Haloarchaeal Operon-Like Structural Dynamics over Short Evolutionary Distances.},
author = {Seitzer P, Yao AI, Cisneros A, Facciotti MT.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8121900},
pmid = {33266086}
}
@article{lin411753,
title = {Biochemical Pathways Leading to the Formation of Wyosine Derivatives in tRNA of Archaea.},
author = {Urbonavicius J, Tauraite D.},
journal = {Biomolecules},
year = {2020},
doi = {10.3390/biom10121627},
pmid = {33276555}
}
@article{lin411210,
title = {Accessory Gvp Proteins Form a Complex During Gas Vesicle Formation of Haloarchaea.},
author = {Volkner K, Jost A, Pfeifer F.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.610179},
pmid = {33281806}
}
@article{lin411029,
title = {SugarPy facilitates the universal, discovery-driven analysis of intact glycopeptides.},
author = {Schulze S, Oltmanns A, Fufezan C, Kragenbring J, Mormann M, Pohlschroder M, Hippler M.},
journal = {Bioinformatics},
year = {2021},
doi = {10.1093/bioinformatics/btaa1042},
pmid = {33325487}
}
@article{lin411195,
title = {Haloferax volcanii Immersed Liquid Biofilms Develop Independently of Known Biofilm Machineries and Exhibit Rapid Honeycomb Pattern Formation.},
author = {Schiller H, Schulze S, Mutan Z, de Vaulx C, Runcie C, Schwartz J, Rados T, Bisson Filho AW, Pohlschroder M.},
journal = {mSphere},
year = {2020},
doi = {10.1128/msphere.00976-20},
pmid = {33328348}
}
@article{lin411125,
title = {Establishing Live-Cell Single-Molecule Localization Microscopy Imaging and Single-Particle Tracking in the Archaeon Haloferax volcanii.},
author = {Turkowyd B, Schreiber S, Wortz J, Segal ES, Mevarech M, Duggin IG, Marchfelder A, Endesfelder U.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.583010},
pmid = {33329447}
}
@article{lin411228,
title = {Splicing Endonuclease Is an Important Player in rRNA and tRNA Maturation in Archaea.},
author = {Schwarz TS, Berkemer SJ, Bernhart SH, Weiss M, Ferreira-Cerca S, Stadler PF, Marchfelder A.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.594838},
pmid = {33329479}
}
@article{lin411128,
title = {Insights into gene expression changes under conditions that facilitate horizontal gene transfer (mating) of a model archaeon.},
author = {Makkay AM, Louyakis AS, Ram-Mohan N, Gophna U, Gogarten JP, Papke RT.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-79296-w},
pmid = {33339886}
}
@article{lin411696,
title = {Mechanical and structural properties of archaeal hypernucleosomes.},
author = {Henneman B, Brouwer TB, Erkelens AM, Kuijntjes GJ, van Emmerik C, van der Valk RA, Timmer M, Kirolos NCS, van Ingen H, van Noort J, Dame RT.},
journal = {Nucleic Acids Res},
year = {2021},
doi = {10.1093/nar/gkaa1196},
pmid = {33341892}
}
@article{lin411076,
title = {Acetate Metabolism in Archaea: Characterization of an Acetate Transporter and of Enzymes Involved in Acetate Activation and Gluconeogenesis in Haloferax volcanii.},
author = {Kuprat T, Johnsen U, Ortjohann M, Schonheit P.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.604926},
pmid = {33343547}
}
@article{lin411450,
title = {Exploring the Molecular Machinery of Denitrification in Haloferax mediterranei Through Proteomics.},
author = {Torregrosa-Crespo J, Pire C, Richardson DJ, Martinez-Espinosa RM.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.605859},
pmid = {33363526}
}
@article{lin411449,
title = {Functional Prediction and Assignment of Methanobrevibacter ruminantium M1 Operome Using a Combined Bioinformatics Approach.},
author = {Bharathi M, Senthil Kumar N, Chellapandi P.},
journal = {Front Genet},
year = {2020},
doi = {10.3389/fgene.2020.593990},
pmid = {33391347}
}
@article{lin411088,
title = {Mutations Affecting HVO_1357 or HVO_2248 Cause Hypermotility in Haloferax volcanii, Suggesting Roles in Motility Regulation.},
author = {Collins M, Afolayan S, Igiraneza AB, Schiller H, Krespan E, Beiting DP, Dyall-Smith M, Pfeiffer F, Pohlschroder M.},
journal = {Genes (Basel)},
year = {2020},
doi = {10.3390/genes12010058},
pmid = {33396553}
}
@article{lin411651,
title = {Insights into synthesis and function of KsgA/Dim1-dependent rRNA modifications in archaea.},
author = {Knuppel R, Trahan C, Kern M, Wagner A, Grunberger F, Hausner W, Quax TEF, Albers SV, Oeffinger M, Ferreira-Cerca S.},
journal = {Nucleic Acids Res},
year = {2021},
doi = {10.1093/nar/gkaa1268},
pmid = {33434266}
}
@article{lin411140,
title = {Improved growth and morphological plasticity of Haloferax volcanii.},
author = {de Silva RT, Abdul-Halim MF, Pittrich DA, Brown HJ, Pohlschroder M, Duggin IG.},
journal = {Microbiology (Reading)},
year = {2021},
doi = {10.1099/mic.0.001012},
pmid = {33459585}
}
@article{lin411298,
title = {Characterization of multicomponent antioxidants from Haloferax alexandrinus GUSF-1 (KF796625).},
author = {Alvares JJ, Furtado IJ.},
journal = {3 Biotech},
year = {2021},
doi = {10.1007/s13205-020-02584-9},
pmid = {33489677}
}
@article{lin411277,
title = {The Novel Halovirus Hardycor1, and the Presence of Active (Induced) Proviruses in Four Haloarchaea.},
author = {Dyall-Smith M, Pfeiffer F, Chiang PW, Tang SL.},
journal = {Genes (Basel)},
year = {2021},
doi = {10.3390/genes12020149},
pmid = {33498646}
}
@article{lin411612,
title = {Urm1: A Non-Canonical UBL.},
author = {Termathe M, Leidel SA.},
journal = {Biomolecules},
year = {2021},
doi = {10.3390/biom11020139},
pmid = {33499055}
}
@article{lin411226,
title = {Growth Phase Dependent Cell Shape of Haloarcula.},
author = {Schwarzer S, Rodriguez-Franco M, Oksanen HM, Quax TEF.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9020231},
pmid = {33499340}
}
@article{lin411402,
title = {Enhancing Open Modification Searches via a Combined Approach Facilitated by Ursgal.},
author = {Schulze S, Igiraneza AB, Kosters M, Leufken J, Leidel SA, Garcia BA, Fufezan C, Pohlschroder M.},
journal = {J Proteome Res},
year = {2021},
doi = {10.1021/acs.jproteome.0c00799},
pmid = {33514075}
}
@article{lin411106,
title = {Analysis of Cell-Cell Bridges in Haloferax volcanii Using Electron Cryo-Tomography Reveal a Continuous Cytoplasm and S-Layer.},
author = {Sivabalasarma S, Wetzel H, Nussbaum P, van der Does C, Beeby M, Albers SV.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.612239},
pmid = {33519769}
}
@article{lin411397,
title = {Post-transcriptional regulation of redox homeostasis by the small RNA SHOxi in haloarchaea.},
author = {Gelsinger DR, Reddy R, Whittington K, Debic S, DiRuggiero J.},
journal = {RNA Biol},
year = {2021},
doi = {10.1080/15476286.2021.1874717},
pmid = {33522404}
}
@article{lin411112,
title = {Archaeal cell biology: diverse functions of tubulin-like cytoskeletal proteins at the cell envelope.},
author = {Liao Y, Ithurbide S, de Silva RT, Erdmann S, Duggin IG.},
journal = {Emerg Top Life Sci},
year = {2018},
doi = {10.1042/etls20180026},
pmid = {33525829}
}
@article{lin411090,
title = {Glucose Metabolism and Acetate Switch in Archaea: the Enzymes in Haloferax volcanii.},
author = {Kuprat T, Ortjohann M, Johnsen U, Schonheit P.},
journal = {J Bacteriol},
year = {2021},
doi = {10.1128/jb.00690-20},
pmid = {33558390}
}
@article{lin411436,
title = {Transcriptome-Wide Analysis of Stationary Phase Small ncRNAs in E. coli.},
author = {Raad N, Luidalepp H, Fasnacht M, Polacek N.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22041703},
pmid = {33567722}
}
@article{lin411721,
title = {Halolysin R4 of Haloferax mediterranei confers its host antagonistic and defensive activities.},
author = {Chen S, Sun S, Wang R, Feng H, Xiang H.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.02889-20},
pmid = {33579684}
}
@article{lin411158,
title = {Adaptation reduces competitive dominance and alters community assembly.},
author = {Nadeau CP, Farkas TE, Makkay AM, Papke RT, Urban MC.},
journal = {Proc Biol Sci},
year = {2021},
doi = {10.1098/rspb.2020.3133},
pmid = {33593186}
}
@article{lin411702,
title = {The Genome Copy Number of the Thermophilic Cyanobacterium Thermosynechococcus elongatus E542 Is Controlled by Growth Phase and Nutrient Availability.},
author = {Riaz S, Xiao M, Chen P, Li M, Cui Y, Daroch M.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.02993-20},
pmid = {33608293}
}
@article{lin411169,
title = {Cellular and Genomic Properties of Haloferax gibbonsii LR2-5, the Host of Euryarchaeal Virus HFTV1.},
author = {Tittes C, Schwarzer S, Pfeiffer F, Dyall-Smith M, Rodriguez-Franco M, Oksanen HM, Quax TEF.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.625599},
pmid = {33664716}
}
@article{lin411097,
title = {Nitrate-Responsive Suppression of Dimethyl Sulfoxide Respiration in a Facultative Anaerobic Haloarchaeon, Haloferax volcanii.},
author = {Koyanagi I, Dohra H, Fujiwara T.},
journal = {J Bacteriol},
year = {2021},
doi = {10.1128/jb.00655-20},
pmid = {33820797}
}
@article{lin411658,
title = {Nutrient supplementation experiments with saltern microbial communities implicate utilization of DNA as a source of phosphorus.},
author = {Hua Z, Ouellette M, Makkay AM, Papke RT, Zhaxybayeva O.},
journal = {ISME J},
year = {2021},
doi = {10.1038/s41396-021-00960-8},
pmid = {33846564}
}
@article{lin411254,
title = {Cell division in the archaeon Haloferax volcanii relies on two FtsZ proteins with distinct functions in division ring assembly and constriction.},
author = {Liao Y, Ithurbide S, Evenhuis C, Lowe J, Duggin IG.},
journal = {Nat Microbiol},
year = {2021},
doi = {10.1038/s41564-021-00894-z},
pmid = {33903747}
}
@article{lin411422,
title = {Functional and Molecular Characterization of the Halomicrobium sp. IBSBa Inulosucrase.},
author = {Abaramak G, Porras-Dominguez JR, Janse van Rensburg HC, Lescrinier E, Toksoy Oner E, Kirtel O, Van den Ende W.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9040749},
pmid = {33918392}
}
@article{lin411325,
title = {Widespread divergent transcription from bacterial and archaeal promoters is a consequence of DNA-sequence symmetry.},
author = {Warman EA, Forrest D, Guest T, Haycocks JJRJ, Wade JT, Grainger DC.},
journal = {Nat Microbiol},
year = {2021},
doi = {10.1038/s41564-021-00898-9},
pmid = {33958766}
}
@article{lin411755,
title = {Oxygen Generation via Water Splitting by a Novel Biogenic Metal Ion-Binding Compound.},
author = {Dershwitz P, Bandow NL, Yang J, Semrau JD, McEllistrem MT, Heinze RA, Fonseca M, Ledesma JC, Jennett JR, DiSpirito AM, Athwal NS, Hargrove MS, Bobik TA, Zischka H, DiSpirito AA.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.00286-21},
pmid = {33962982}
}
@article{lin411600,
title = {Phenotypic Characterization of Sulfolobus islandicus Strains Lacking the B-Family DNA Polymerases PolB2 and PolB3 Individually and in Combination.},
author = {Bohall PB, Bell SD.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.666974},
pmid = {33968003}
}
@article{lin411269,
title = {Resurrection of Ancestral Malate Dehydrogenases Reveals the Evolutionary History of Halobacterial Proteins: Deciphering Gene Trajectories and Changes in Biochemical Properties.},
author = {Blanquart S, Groussin M, Le Roy A, Szollosi GJ, Girard E, Franzetti B, Gouy M, Madern D.},
journal = {Mol Biol Evol},
year = {2021},
doi = {10.1093/molbev/msab146},
pmid = {33974066}
}
@article{lin411529,
title = {Biosynthesis of silver nanoparticles using Haloferax sp. NRS1: image analysis, characterization, in vitro thrombolysis and cytotoxicity.},
author = {Tag HM, Saddiq AA, Alkinani M, Hagagy N.},
journal = {AMB Express},
year = {2021},
doi = {10.1186/s13568-021-01235-3},
pmid = {34041605}
}
@article{lin411198,
title = {A Small RNA Is Linking CRISPR-Cas and Zinc Transport.},
author = {Markle P, Maier LK, Maass S, Hirschfeld C, Bartel J, Becher D, Voss B, Marchfelder A.},
journal = {Front Mol Biosci},
year = {2021},
doi = {10.3389/fmolb.2021.640440},
pmid = {34055875}
}
@article{lin411685,
title = {Distinct microbial community along the chronic oil pollution continuum of the Persian Gulf converge with oil spill accidents.},
author = {Rezaei Somee M, Dastgheib SMM, Shavandi M, Ghanbari Maman L, Kavousi K, Amoozegar MA, Mehrshad M.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-90735-0},
pmid = {34059729}
}
@article{lin411748,
title = {The Pentose Phosphate Pathway in Yeasts-More Than a Poor Cousin of Glycolysis.},
author = {Bertels LK, Fernandez Murillo L, Heinisch JJ.},
journal = {Biomolecules},
year = {2021},
doi = {10.3390/biom11050725},
pmid = {34065948}
}
@article{lin411637,
title = {The Hyperthermophilic Restriction-Modification Systems of Thermococcus kodakarensis Protect Genome Integrity.},
author = {Zatopek KM, Burkhart BW, Morgan RD, Gehring AM, Scott KA, Santangelo TJ, Gardner AF.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.657356},
pmid = {34093470}
}
@article{lin411200,
title = {The archaeal protein SepF is essential for cell division in Haloferax volcanii.},
author = {Nussbaum P, Gerstner M, Dingethal M, Erb C, Albers SV.},
journal = {Nat Commun},
year = {2021},
doi = {10.1038/s41467-021-23686-9},
pmid = {34103513}
}
@article{lin411656,
title = {The Oligosaccharyltransferase AglB Supports Surface-Associated Growth and Iron Oxidation in Methanococcus maripaludis.},
author = {Holten MP, Fonseca DR, Costa KC.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.00995-21},
pmid = {34132588}
}
@article{lin411297,
title = {Comprehensive glycoproteomics shines new light on the complexity and extent of glycosylation in archaea.},
author = {Schulze S, Pfeiffer F, Garcia BA, Pohlschroder M.},
journal = {PLoS Biol},
year = {2021},
doi = {10.1371/journal.pbio.3001277},
pmid = {34138841}
}
@article{lin411114,
title = {Characterization of Non-selected Intermolecular Gene Conversion in the Polyploid Haloarchaeon Haloferax volcanii.},
author = {Wasser D, Borst A, Hammelmann M, Ludt K, Soppa J.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.680854},
pmid = {34177864}
}
@article{lin411186,
title = {Open Issues for Protein Function Assignment in Haloferax volcanii and Other Halophilic Archaea.},
author = {Pfeiffer F, Dyall-Smith M.},
journal = {Genes (Basel)},
year = {2021},
doi = {10.3390/genes12070963},
pmid = {34202810}
}
@article{lin411096,
title = {Halobacterium salinarum and Haloferax volcanii Comparative Transcriptomics Reveals Conserved Transcriptional Processing Sites.},
author = {Ibrahim AGAE, Vencio RZN, Lorenzetti APR, Koide T.},
journal = {Genes (Basel)},
year = {2021},
doi = {10.3390/genes12071018},
pmid = {34209065}
}
@article{lin411284,
title = {A Synthetic Riboswitch to Regulate Haloarchaeal Gene Expression.},
author = {Born J, Weitzel K, Suess B, Pfeifer F.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.696181},
pmid = {34211452}
}
@article{lin411262,
title = {CdrS Is a Global Transcriptional Regulator Influencing Cell Division in Haloferax volcanii.},
author = {Liao Y, Vogel V, Hauber S, Bartel J, Alkhnbashi OS, Maass S, Schwarz TS, Backofen R, Becher D, Duggin IG, Marchfelder A.},
journal = {mBio},
year = {2021},
doi = {10.1128/mbio.01416-21},
pmid = {34253062}
}
@article{lin411329,
title = {Revisiting N-glycosylation in Halobacterium salinarum: Characterizing a dolichol phosphate- and glycoprotein-bound tetrasaccharide.},
author = {Vershinin Z, Zaretsky M, Guan Z, Eichler J.},
journal = {Glycobiology},
year = {2021},
doi = {10.1093/glycob/cwab080},
pmid = {34314490}
}
@article{lin411181,
title = {Identifying Small Open Reading Frames in Prokaryotes with Ribosome Profiling.},
author = {Vazquez-Laslop N, Sharma CM, Mankin A, Buskirk AR.},
journal = {J Bacteriol},
year = {2022},
doi = {10.1128/jb.00294-21},
pmid = {34339296}
}
@article{lin411155,
title = {Remote Homology Detection Identifies a Eukaryotic RPA DBD-C-like DNA Binding Domain as a Conserved Feature of Archaeal Rpa1-Like Proteins.},
author = {MacNeill SA.},
journal = {Front Mol Biosci},
year = {2021},
doi = {10.3389/fmolb.2021.675229},
pmid = {34355021}
}
@article{lin411744,
title = {In Silico Analysis of the Enzymes Involved in Haloarchaeal Denitrification.},
author = {Bernabeu E, Miralles-Robledillo JM, Giani M, Valdes E, Martinez-Espinosa RM, Pire C.},
journal = {Biomolecules},
year = {2021},
doi = {10.3390/biom11071043},
pmid = {34356667}
}
@article{lin411470,
title = {Efficacy of signal peptide predictors in identifying signal peptides in the experimental secretome of Picrophilous torridus, a thermoacidophilic archaeon.},
author = {Singhal N, Garg A, Singh N, Gulati P, Kumar M, Goel M.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0255826},
pmid = {34358261}
}
@article{lin411759,
title = {Protospacer-Adjacent Motif Specificity during Clostridioides difficile Type I-B CRISPR-Cas Interference and Adaptation.},
author = {Maikova A, Boudry P, Shiriaeva A, Vasileva A, Boutserin A, Medvedeva S, Semenova E, Severinov K, Soutourina O.},
journal = {mBio},
year = {2021},
doi = {10.1128/mbio.02136-21},
pmid = {34425703}
}
@article{lin411478,
title = {High-Temperature Live-Cell Imaging of Cytokinesis, Cell Motility, and Cell-Cell Interactions in the Thermoacidophilic Crenarchaeon Sulfolobus acidocaldarius.},
author = {Charles-Orszag A, Lord SJ, Mullins RD.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.707124},
pmid = {34447359}
}
@article{lin411703,
title = {In situ imaging of bacterial outer membrane projections and associated protein complexes using electron cryo-tomography.},
author = {Kaplan M, Chreifi G, Metskas LA, Liedtke J, Wood CR, Oikonomou CM, Nicolas WJ, Subramanian P, Zacharoff LA, Wang Y, Chang YW, Beeby M, Dobro MJ, Zhu Y, McBride MJ, Briegel A, Shaffer CL, Jensen GJ.},
journal = {Elife},
year = {2021},
doi = {10.7554/elife.73099},
pmid = {34468314}
}
@article{lin411587,
title = {Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study.},
author = {Foox J, Tighe SW, Nicolet CM, Zook JM, Byrska-Bishop M, Clarke WE, Khayat MM, Mahmoud M, Laaguiby PK, Herbert ZT, Warner D, Grills GS, Jen J, Levy S, Xiang J, Alonso A, Zhao X, Zhang W, Teng F, Zhao Y, Lu H, Schroth GP, Narzisi G, Farmerie W, Sedlazeck FJ, Baldwin DA, Mason CE.},
journal = {Nat Biotechnol},
year = {2021},
doi = {10.1038/s41587-021-01049-5},
pmid = {34504351}
}
@article{lin411574,
title = {Novel Homologs of Isopentenyl Phosphate Kinase Reveal Class-Wide Substrate Flexibility.},
author = {Kumar V, Johnson BP, Dimas DA, Singh S.},
journal = {ChemCatChem},
year = {2021},
doi = {10.1002/cctc.202100595},
pmid = {34630731}
}
@article{lin411074,
title = {Distinct Regions of the Haloferax volcanii Dolichol Phosphate-Mannose Synthase AglD Mediate the Assembly and Subsequent Processing of the Lipid-Linked Mannose.},
author = {Zaretsky M, Guan Z, Zarivach R, Eichler J.},
journal = {J Bacteriol},
year = {2022},
doi = {10.1128/jb.00447-21},
pmid = {34633871}
}
@article{lin411058,
title = {Structural and Kinetic Insights Into the Molecular Basis of Salt Tolerance of the Short-Chain Glucose-6-Phosphate Dehydrogenase From Haloferax volcanii.},
author = {Fuentes-Ugarte N, Herrera SM, Maturana P, Castro-Fernandez V, Guixe V.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.730429},
pmid = {34650535}
}
@article{lin411232,
title = {Characterization of promoters in archaeal genomes based on DNA structural parameters.},
author = {Martinez GS, Sarkar S, Kumar A, Perez-Rueda E, de Avila E Silva S.},
journal = {Microbiologyopen},
year = {2021},
doi = {10.1002/mbo3.1230},
pmid = {34713600}
}
@article{lin411070,
title = {High-level synthesis and secretion of laccase, a metalloenzyme biocatalyst, by the halophilic archaeon Haloferax volcanii.},
author = {Kasirajan L, Adams Z, Couto-Rodriguez RL, Gal D, Jia H, Mondragon P, Wassel PC, Yu D, Uthandi S, Maupin-Furlow JA.},
journal = {Methods Enzymol},
year = {2021},
doi = {10.1016/bs.mie.2021.05.012},
pmid = {34752290}
}
@article{lin411049,
title = {Expression and tandem affinity purification of 20S proteasomes and other multisubunit complexes in Haloferax volcanii.},
author = {Jia H, Couto-Rodriguez RL, Gal D, Mondragon P, Wassel PC, Yu D, Maupin-Furlow JA.},
journal = {Methods Enzymol},
year = {2021},
doi = {10.1016/bs.mie.2021.08.002},
pmid = {34752292}
}
@article{lin411135,
title = {Elucidation of the Translation Initiation Factor Interaction Network of Haloferax volcanii Reveals Coupling of Transcription and Translation in Haloarchaea.},
author = {Schramm F, Borst A, Linne U, Soppa J.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.742806},
pmid = {34764944}
}
@article{lin411616,
title = {Internal Promoters and Their Effects on the Transcription of Operon Genes for Epothilone Production in Myxococcus xanthus.},
author = {Wang Y, Yue XJ, Yuan SF, Hong Y, Hu WF, Li YZ.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.758561},
pmid = {34778232}
}
@article{lin411473,
title = {Complete atomic structure of a native archaeal cell surface.},
author = {von Kugelgen A, Alva V, Bharat TAM.},
journal = {Cell Rep},
year = {2021},
doi = {10.1016/j.celrep.2021.110052},
pmid = {34818541}
}
@article{lin411783,
title = {Cloning, Expression and Characterization of UDP-Glucose Dehydrogenases.},
author = {Couto MR, Rodrigues JL, Rodrigues LR.},
journal = {Life (Basel)},
year = {2021},
doi = {10.3390/life11111201},
pmid = {34833077}
}
@article{lin411100,
title = {Putative Nucleotide-Based Second Messengers in the Archaeal Model Organisms Haloferax volcanii and Sulfolobus acidocaldarius.},
author = {Braun F, Recalde A, Bahre H, Seifert R, Albers SV.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.779012},
pmid = {34880846}
}
@article{lin411395,
title = {An archaeal histone-like protein regulates gene expression in response to salt stress.},
author = {Sakrikar S, Schmid AK.},
journal = {Nucleic Acids Res},
year = {2021},
doi = {10.1093/nar/gkab1175},
pmid = {34883507}
}
@article{lin411768,
title = {Identifying Components of a Halobacterium salinarum N-Glycosylation Pathway.},
author = {Vershinin Z, Zaretsky M, Guan Z, Eichler J.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.779599},
pmid = {34925283}
}
@article{lin411588,
title = {Double mutations far from the active site affect cold activity in an Antarctic halophilic beta-galactosidase.},
author = {Laye VJ, DasSarma S.},
journal = {Protein Sci},
year = {2022},
doi = {10.1002/pro.4264},
pmid = {34939242}
}
@article{lin411555,
title = {Halovirus HF2 Intergenic Repeat Sequences Carry Promoters.},
author = {Russ B, Pfeiffer F, Dyall-Smith M.},
journal = {Viruses},
year = {2021},
doi = {10.3390/v13122388},
pmid = {34960657}
}
@article{lin411333,
title = {Effect of Mutations in GvpJ and GvpM on Gas Vesicle Formation of Halobacterium salinarum.},
author = {Jost A, Knitsch R, Volkner K, Pfeifer F.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.794240},
pmid = {34975818}
}
@article{lin411316,
title = {A Micrarchaeon Isolate Is Covered by a Proteinaceous S-Layer.},
author = {Gfrerer S, Winkler D, Novion Ducassou J, Coute Y, Rachel R, Gescher J.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.01553-21},
pmid = {35020453}
}
@article{lin411358,
title = {A Well-Conserved Archaeal B-Family Polymerase Functions as an Extender in Translesion Synthesis.},
author = {Feng X, Zhang B, Gao Z, Xu R, Liu X, Ishino S, Feng M, Shen Y, Ishino Y, She Q.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.02659-21},
pmid = {35038911}
}
@article{lin411433,
title = {Genetic Study of Four Candidate Holliday Junction Processing Proteins in the Thermophilic Crenarchaeon Sulfolobus acidocaldarius.},
author = {Matsuda R, Suzuki S, Kurosawa N.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms23020707},
pmid = {35054893}
}
@article{lin411185,
title = {The Role of the Universally Conserved ATPase YchF/Ola1 in Translation Regulation during Cellular Stress.},
author = {Landwehr V, Milanov M, Hong J, Koch HG.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms10010014},
pmid = {35056463}
}
@article{lin411585,
title = {Brucella abortus Encodes an Active Rhomboid Protease: Proteome Response after Rhomboid Gene Deletion.},
author = {Marchesini MI, Poetsch A, Guidolin LS, Comerci DJ.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10010114},
pmid = {35056563}
}
@article{lin411164,
title = {Effects of ionic strength on the folding and stability of SAMP1, a ubiquitin-like halophilic protein.},
author = {Mizukami T, Bedford JT, Liao S, Greene LH, Roder H.},
journal = {Biophys J},
year = {2022},
doi = {10.1016/j.bpj.2022.01.010},
pmid = {35063455}
}
@article{lin411493,
title = {Conditional Alternative Protein Splicing Promoted by Inteins from Haloquadratum walsbyi.},
author = {Yalala VR, Lynch AK, Mills KV.},
journal = {Biochemistry},
year = {2022},
doi = {10.1021/acs.biochem.1c00788},
pmid = {35073064}
}
@article{lin411255,
title = {DRJAMM Is Involved in the Oxidative Resistance in Deinococcus radiodurans.},
author = {Cai J, Pan C, Zhao Y, Xu H, Tian B, Wang L, Hua Y.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.756867},
pmid = {35154022}
}
@article{lin411092,
title = {Advanced Understanding of Prokaryotic Biofilm Formation through Use of a Cost-Effective and Versatile Multipanel Adhesion (mPAD) Mount.},
author = {Schulze S, Schiller H, Solomonic J, Telhan O, Costa K, Pohlschroder M.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.02283-21},
pmid = {35191778}
}
@article{lin411194,
title = {Halorubrum pleomorphic virus-6 Membrane Fusion Is Triggered by an S-Layer Component of Its Haloarchaeal Host.},
author = {Bignon EA, Chou KR, Roine E, Tischler ND.},
journal = {Viruses},
year = {2022},
doi = {10.3390/v14020254},
pmid = {35215847}
}
@article{lin411300,
title = {Ribosome-Associated ncRNAs (rancRNAs) Adjust Translation and Shape Proteomes.},
author = {Pecoraro V, Rosina A, Polacek N.},
journal = {Noncoding RNA},
year = {2022},
doi = {10.3390/ncrna8020022},
pmid = {35314615}
}
@article{lin411177,
title = {Why Is the UAG (Amber) Stop Codon Almost Absent in Highly Expressed Bacterial Genes?},
author = {Belin D, Puigbo P.},
journal = {Life (Basel)},
year = {2022},
doi = {10.3390/life12030431},
pmid = {35330182}
}
@article{lin411018,
title = {A Twist to the Kirby-Bauer Disk Diffusion Susceptibility Test: an Accessible Laboratory Experiment Comparing Haloferax volcanii and Escherichia coli Antibiotic Susceptibility to Highlight the Unique Cell Biology of Archaea.},
author = {Schiller H, Young C, Schulze S, Tripepi M, Pohlschroder M.},
journal = {J Microbiol Biol Educ},
year = {2022},
doi = {10.1128/jmbe.00234-21},
pmid = {35340443}
}
@article{lin411024,
title = {Sec-Dependent Secretion of Subtilase SptE in Haloarchaea Facilitates Its Proper Folding and Heterocatalytic Processing by Halolysin SptA Extracellularly.},
author = {Mei S, Li M, Sun Y, Deng X, Chen N, Liu Y, Yin J, Luo H, Wu Y, He D, Gan F, Tang B, Tang XF.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.00246-22},
pmid = {35348390}
}
@article{lin411724,
title = {Unraveling Anaerobic Metabolisms in a Hypersaline Sediment.},
author = {Solchaga JI, Busalmen JP, Nercessian D.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.811432},
pmid = {35369499}
}
@article{lin411645,
title = {Genetic and Functional Analyses of Archaeal ATP-Dependent RNA Ligase in C/D Box sRNA Circularization and Ribosomal RNA Processing.},
author = {Liu Y, Takagi Y, Sugijanto M, Nguyen KDM, Hirata A, Hori H, Ho CK.},
journal = {Front Mol Biosci},
year = {2022},
doi = {10.3389/fmolb.2022.811548},
pmid = {35445080}
}
@article{lin411462,
title = {The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism.},
author = {Zhang H, Gong X, Zhao Q, Mukai T, Vargas-Rodriguez O, Zhang H, Zhang Y, Wassel P, Amikura K, Maupin-Furlow J, Ren Y, Xu X, Wolf YI, Makarova KS, Koonin EV, Shen Y, Soll D, Fu X.},
journal = {Nucleic Acids Res},
year = {2022},
doi = {10.1093/nar/gkac271},
pmid = {35466371}
}
@article{lin411141,
title = {Functional Insights of Salinity Stress-Related Pathways in Metagenome-Resolved Methanothrix Genomes.},
author = {Gagliano MC, Sampara P, Plugge CM, Temmink H, Sudmalis D, Ziels RM.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.02449-21},
pmid = {35477253}
}
@article{lin411774,
title = {Crystal structures and insights into precursor tRNA 5'-end processing by prokaryotic minimal protein-only RNase P.},
author = {Li Y, Su S, Gao Y, Lu G, Liu H, Chen X, Shao Z, Zhang Y, Shao Q, Zhao X, Yang J, Cao C, Lin J, Ma J, Gan J.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-30072-6},
pmid = {35484139}
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title = {Cas1 and Fen1 Display Equivalent Functions During Archaeal DNA Repair.},
author = {Wortz J, Smith V, Fallmann J, Konig S, Thuraisingam T, Walther P, Urlaub H, Stadler PF, Allers T, Hille F, Marchfelder A.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.822304},
pmid = {35495653}
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@article{lin411153,
title = {Machine learning and statistics shape a novel path in archaeal promoter annotation.},
author = {Martinez GS, Perez-Rueda E, Sarkar S, Kumar A, de Avila E Silva S.},
journal = {BMC Bioinformatics},
year = {2022},
doi = {10.1186/s12859-022-04714-x},
pmid = {35538405}
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@article{lin411726,
title = {Engineering substrate promiscuity in 2,4-dichlorophenol hydroxylase by in silico design.},
author = {Wang Y, Zhang C, An S, Fang X, Yu D.},
journal = {RSC Adv},
year = {2018},
doi = {10.1039/c8ra03229g},
pmid = {35539933}
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@article{lin411633,
title = {Phyletic Distribution and Diversification of the Phage Shock Protein Stress Response System in Bacteria and Archaea.},
author = {Popp PF, Gumerov VM, Andrianova EP, Bewersdorf L, Mascher T, Zhulin IB, Wolf D.},
journal = {mSystems},
year = {2022},
doi = {10.1128/msystems.01348-21},
pmid = {35604119}
}
@article{lin411389,
title = {Structural insights into the mechanism of archaellar rotational switching.},
author = {Altegoer F, Quax TEF, Weiland P, Nussbaum P, Giammarinaro PI, Patro M, Li Z, Oesterhelt D, Grininger M, Albers SV, Bange G.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-30358-9},
pmid = {35606361}
}
@article{lin411597,
title = {Characterization of a small tRNA-binding protein that interacts with the archaeal proteasome complex.},
author = {Hogrel G, Marino-Puertas L, Laurent S, Ibrahim Z, Coves J, Girard E, Gabel F, Fenel D, Daugeron MC, Clouet-d'Orval B, Basta T, Flament D, Franzetti B.},
journal = {Mol Microbiol},
year = {2022},
doi = {10.1111/mmi.14948},
pmid = {35615908}
}
@article{lin411187,
title = {Comparative Analysis of rRNA Removal Methods for RNA-Seq Differential Expression in Halophilic Archaea.},
author = {Pastor MM, Sakrikar S, Rodriguez DN, Schmid AK.},
journal = {Biomolecules},
year = {2022},
doi = {10.3390/biom12050682},
pmid = {35625610}
}
@article{lin411769,
title = {Metabolomic Profile of the Fungus Cryomyces antarcticus Under Simulated Martian and Space Conditions as Support for Life-Detection Missions on Mars.},
author = {Gevi F, Leo P, Cassaro A, Pacelli C, de Vera JP, Rabbow E, Timperio AM, Onofri S.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.749396},
pmid = {35633719}
}
@article{lin411603,
title = {Escherichia coli cell factories with altered chromosomal replication scenarios exhibit accelerated growth and rapid biomass production.},
author = {Yang HJ, Kim K, Kwon SK, Kim JF.},
journal = {Microb Cell Fact},
year = {2022},
doi = {10.1186/s12934-022-01851-z},
pmid = {35729580}
}
@article{lin411014,
title = {Identification of acetylated diether lipids in halophilic Archaea.},
author = {Kropp C, Lipp J, Schmidt AL, Seisenberger C, Linde M, Hinrichs KU, Babinger P.},
journal = {Microbiologyopen},
year = {2022},
doi = {10.1002/mbo3.1299},
pmid = {35765181}
}
@article{lin411596,
title = {Assessment of Haloferax mediterranei Genome in Search of Copper-Molecular Machinery With Potential Applications for Bioremediation.},
author = {Llorca MG, Martinez-Espinosa RM.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.895296},
pmid = {35783429}
}
@article{lin410984,
title = {Non-radioactive In Vivo Labeling of RNA with 4-Thiouracil.},
author = {Braun C, Knuppel R, Perez-Fernandez J, Ferreira-Cerca S.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2501-9_12},
pmid = {35796990}
}
@article{lin410993,
title = {Differential Translation Activity Analysis Using Bioorthogonal Noncanonical Amino Acid Tagging (BONCAT) in Archaea.},
author = {Kern M, Ferreira-Cerca S.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2501-9_14},
pmid = {35796992}
}
@article{lin411019,
title = {Proteolysis at the Archaeal Membrane: Advances on the Biological Function and Natural Targets of Membrane-Localized Proteases in Haloferax volcanii.},
author = {De Castro RE, Gimenez MI, Cerletti M, Paggi RA, Costa MI.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.940865},
pmid = {35814708}
}
@article{lin411286,
title = {Genomic analysis of heavy metal-resistant Halobacterium salinarum isolated from Sfax solar saltern sediments.},
author = {Baati H, Siala M, Azri C, Ammar E, Dunlap C, Trigui M.},
journal = {Extremophiles},
year = {2022},
doi = {10.1007/s00792-022-01273-0},
pmid = {35842547}
}
@article{lin411237,
title = {TrmB Family Transcription Factor as a Thiol-Based Regulator of Oxidative Stress Response.},
author = {Mondragon P, Hwang S, Kasirajan L, Oyetoro R, Nasthas A, Winters E, Couto-Rodriguez RL, Schmid A, Maupin-Furlow JA.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.00633-22},
pmid = {35856564}
}
@article{lin411584,
title = {Exploiting the Type I-B CRISPR Genome Editing System in Thermoanaerobacterium aotearoense SCUT27 and Engineering the Strain for Enhanced Ethanol Production.},
author = {Dai K, Fu H, Guo X, Qu C, Lan Y, Wang J.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.00751-22},
pmid = {35862665}
}
@article{lin411338,
title = {Biochemical and Kinetic Characterization of the Glucose-6-Phosphate Dehydrogenase from Helicobacter pylori Strain 29CaP.},
author = {Ortiz-Ramirez P, Hernandez-Ochoa B, Ortega-Cuellar D, Gonzalez-Valdez A, Martinez-Rosas V, Morales-Luna L, Arreguin-Espinosa R, Castillo-Rodriguez RA, Canseco-Avila LM, Cardenas-Rodriguez N, Perez de la Cruz V, Montiel-Gonzalez AM, Gomez-Chavez F, Gomez-Manzo S.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10071359},
pmid = {35889079}
}
@article{lin411668,
title = {Role for DNA double strand end-resection activity of RecBCD in control of aberrant chromosomal replication initiation in Escherichia coli.},
author = {Goswami S, Gowrishankar J.},
journal = {Nucleic Acids Res},
year = {2022},
doi = {10.1093/nar/gkac670},
pmid = {35929028}
}
@article{lin411332,
title = {The Newly Sequenced Genome of Pisum sativum Is Replete with Potential G-Quadruplex-Forming Sequences-Implications for Evolution and Biological Regulation.},
author = {Dobrovolna M, Bohalova N, Peska V, Wang J, Luo Y, Bartas M, Volna A, Mergny JL, Brazda V.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms23158482},
pmid = {35955617}
}
@article{lin411265,
title = {Interaction of the gas vesicle proteins GvpA, GvpC, GvpN, and GvpO of Halobacterium salinarum.},
author = {Jost A, Pfeifer F.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.971917},
pmid = {35966690}
}
@article{lin411328,
title = {A novel structural maintenance of chromosomes (SMC)-related protein family specific to Archaea.},
author = {Yoshinaga M, Nakayama T, Inagaki Y.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.913088},
pmid = {35992648}
}
@article{lin411066,
title = {Isolation of a virus causing a chronic infection in the archaeal model organism Haloferax volcanii reveals antiviral activities of a provirus.},
author = {Alarcon-Schumacher T, Naor A, Gophna U, Erdmann S.},
journal = {Proc Natl Acad Sci U S A},
year = {2022},
doi = {10.1073/pnas.2205037119},
pmid = {35994644}
}
@article{lin411386,
title = {Highly efficient and simple SSPER and rrPCR approaches for the accurate site-directed mutagenesis of large and small plasmids.},
author = {Jia H, Couto-Rodriguez R, Johnson S, Medina S, Novillo B, Huynh P, Kim M, Cooper C, Michalik M, Siew B, Turesson E, Maupin-Furlow JA.},
journal = {N Biotechnol},
year = {2022},
doi = {10.1016/j.nbt.2022.08.004},
pmid = {36007808}
}
@article{lin411717,
title = {Survival characteristics and transcriptome profiling reveal the adaptive response of the Brucella melitensis 16M biofilm to osmotic stress.},
author = {Guo J, Zhu J, Zhao T, Sun Z, Song S, Zhang Y, Zhu D, Cao S, Deng X, Chai Y, Sun Y, Maratbek S, Chen C, Liu L, Zhang H.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.968592},
pmid = {36060772}
}
@article{lin411149,
title = {Air-loaded Gas Vesicle Nanoparticles Promote Cell Growth in Three-dimensional Bioprinted Tissue Constructs.},
author = {Alshehri S, Karan R, Ghalayini S, Kahin K, Khan Z, Renn D, Mathew S, Rueping M, Hauser CAE.},
journal = {Int J Bioprint},
year = {2022},
doi = {10.18063/ijb.v8i3.489},
pmid = {36105129}
}
@article{lin410970,
title = {CRISPR Interference as a Tool to Repress Gene Expression in Haloferax volcanii.},
author = {Schwarz TS, Schreiber SS, Marchfelder A.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_4},
pmid = {36125743}
}
@article{lin410979,
title = {Conversion of Ribosome-Protected mRNA to DNA and Deep Sequencing for Ribosome Profiling in Haloferax volcanii.},
author = {Gelsinger DR, Dallon E, DiRuggiero J.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_14},
pmid = {36125753}
}
@article{lin410971,
title = {Small RNA-Sequencing Library Preparation for the Halophilic Archaeon Haloferax volcanii.},
author = {Gelsinger DR, DiRuggiero J.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_15},
pmid = {36125754}
}
@article{lin411027,
title = {Quantitative Mass Spectrometry by SILAC in Haloferax volcanii.},
author = {Couto-Rodriguez RL, Gal D, McMillan LJ, Koh J, Chen S, Maupin-Furlow JA.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_16},
pmid = {36125755}
}
@article{lin410976,
title = {Proteome Turnover Analysis in Haloferax volcanii by a Heavy Isotope Multilabeling Approach.},
author = {Paggi RA, Albaum SP, Poetsch A, Cerletti M.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_17},
pmid = {36125756}
}
@article{lin410987,
title = {Proteomic Sample Preparation and Data Analysis in Line with the Archaeal Proteome Project.},
author = {Schulze S, Pohlschroder M.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_18},
pmid = {36125757}
}
@article{lin410972,
title = {In Vivo Protein Cross-Linking and Coimmunoprecipitation in Haloferax volcanii.},
author = {Paggi RA, De Castro RE, Cerletti M.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_19},
pmid = {36125758}
}
@article{lin410982,
title = {Carotenoids from Haloarchaea: Extraction, Fractionation, and Characterization.},
author = {Churio MS, Cerletti M, De Castro RE.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_21},
pmid = {36125760}
}
@article{lin410973,
title = {Metal nanoparticles Biosynthesis Using the Halophilic Archaeon Haloferax volcanii.},
author = {Costa MI, Gimenez MI.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_22},
pmid = {36125761}
}
@article{lin410989,
title = {Methods to Analyze Motility in Eury- and Crenarchaea.},
author = {Patro M, van Wolferen M, Ye X, Albers SV, Quax TEF.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_25},
pmid = {36125764}
}
@article{lin410974,
title = {Immersed Liquid Biofilm and Honeycomb Pattern Formations in Haloferax volcanii.},
author = {Mutan Z, Schiller H, Schulze S, Pohlschroder M.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_26},
pmid = {36125765}
}
@article{lin410980,
title = {BrdU Incorporation and Labeling of Nascent DNA to Investigate Archaeal Replication Using Super-Resolution Imaging.},
author = {Lestini R, Collien Y, Olivier D, Olivier N, Myllykallio H.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_29},
pmid = {36125768}
}
@article{lin410990,
title = {Isolation, Purification, and Characterization of Membrane Vesicles from Haloarchaea.},
author = {Mills J, Erdmann S.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_30},
pmid = {36125769}
}
@article{lin410977,
title = {Accessible and Insightful Scientific Learning Experiences Using the Microorganism Haloferax volcanii.},
author = {Schiller H, Young C, Schulze S, Pohlschroder M.},
journal = {Methods Mol Biol},
year = {2022},
doi = {10.1007/978-1-0716-2445-6_34},
pmid = {36125773}
}
@article{lin411315,
title = {Halobacterium salinarum NRC-1 Sustains Voltage Production in a Dual-Chambered Closed Microbial Fuel Cell.},
author = {Goncalves RO, Salehi A, Publico M, Nyende J, Nadarajah N, Ghoreyshi S, Shastri P.},
journal = {ScientificWorldJournal},
year = {2022},
doi = {10.1155/2022/3885745},
pmid = {36132437}
}
@article{lin411777,
title = {Ancestral archaea expanded the genetic code with pyrrolysine.},
author = {Guo LT, Amikura K, Jiang HK, Mukai T, Fu X, Wang YS, O'Donoghue P, Soll D, Tharp JM.},
journal = {J Biol Chem},
year = {2022},
doi = {10.1016/j.jbc.2022.102521},
pmid = {36152750}
}
@article{lin411709,
title = {tRNA derived small RNAs-Small players with big roles.},
author = {George S, Rafi M, Aldarmaki M, ElSiddig M, Al Nuaimi M, Amiri KMA.},
journal = {Front Genet},
year = {2022},
doi = {10.3389/fgene.2022.997780},
pmid = {36199575}
}
@article{lin411628,
title = {Probing the sORF-Encoded Peptides of Deinococcus radiodurans in Response to Extreme Stress.},
author = {Zhou C, Wang Q, Huang Y, Chen Z, Chen S, Zhao Y, Jia C.},
journal = {Mol Cell Proteomics},
year = {2022},
doi = {10.1016/j.mcpro.2022.100423},
pmid = {36210010}
}
@article{lin411701,
title = {Exopolysaccharide composition and size in Sulfolobus acidocaldarius biofilms.},
author = {Kuschmierz L, Meyer M, Brasen C, Wingender J, Schmitz OJ, Siebers B.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.982745},
pmid = {36225367}
}
@article{lin411344,
title = {Isolation and characterization of a main porin from the outer membrane of Salinibacter ruber.},
author = {Farci D, Cocco E, Tanas M, Kirkpatrick J, Maxia A, Tamburini E, Schroder WP, Piano D.},
journal = {J Bioenerg Biomembr},
year = {2022},
doi = {10.1007/s10863-022-09950-7},
pmid = {36229623}
}
@article{lin411623,
title = {Folding Features and Dynamics of 3D Genome Architecture in Plant Fungal Pathogens.},
author = {Xia C, Huang L, Huang J, Zhang H, Huang Y, Benhamed M, Wang M, Chen X, Zhang M, Liu T, Chen W.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02608-22},
pmid = {36250889}
}
@article{lin411256,
title = {The cell biology of archaea.},
author = {van Wolferen M, Pulschen AA, Baum B, Gribaldo S, Albers SV.},
journal = {Nat Microbiol},
year = {2022},
doi = {10.1038/s41564-022-01215-8},
pmid = {36253512}
}
@article{lin411533,
title = {Replication Origin Deletion Enhances Poly(3-Hydroxybutyrate-co-3-Hydroxyvalerate) Synthesis in Haloarchaea.},
author = {Yang H, Chen J, Mitra R, Xue Q, Xiang H, Han J.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02149-22},
pmid = {36264235}
}
@article{lin411556,
title = {StartLink and StartLink+: Prediction of Gene Starts in Prokaryotic Genomes.},
author = {Gemayel K, Lomsadze A, Borodovsky M.},
journal = {Front Bioinform},
year = {2021},
doi = {10.3389/fbinf.2021.704157},
pmid = {36303749}
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@article{lin411334,
title = {Comparative Genomic Insights into Chemoreceptor Diversity and Habitat Adaptation of Archaea.},
author = {Cha G, Liu Y, Yang Q, Bai L, Cheng L, Fan W.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.01574-22},
pmid = {36314867}
}
@article{lin411039,
title = {Application of Archaea in Deubiquitinase-Like Enzyme Discovery and Activity Assay.},
author = {Hepowit NL, Maupin-Furlow JA.},
journal = {Methods Mol Biol},
year = {2023},
doi = {10.1007/978-1-0716-2803-4_10},
pmid = {36350548}
}
@article{lin411366,
title = {Characterization of Polyhydroxybutyrate, PHB, Synthesized by Newly Isolated Haloarchaea Halolamina spp.},
author = {Hagagy N, Saddiq AA, Tag HM, Selim S, AbdElgawad H, Martinez-Espinosa RM.},
journal = {Molecules},
year = {2022},
doi = {10.3390/molecules27217366},
pmid = {36364191}
}
@article{lin410966,
title = {The C-terminal region of phytoene synthase is a key element to control carotenoid biosynthesis in the haloarchaeon Haloferax volcanii.},
author = {Cerletti M, Rabino A, Paggi RA, Ferrari C, Poetsch A, Savilahti H, Kiljunen S, De Castro RE.},
journal = {Biochem J},
year = {2022},
doi = {10.1042/bcj20220403},
pmid = {36373632}
}
@article{lin411166,
title = {Insights into the Distribution and Functional Properties of l-Asparaginase in the Archaeal Domain and Characterization of Picrophilus torridus Asparaginase Belonging to the Novel Family Asp2like1.},
author = {Sharma A, Kaushik V, Goel M.},
journal = {ACS Omega},
year = {2022},
doi = {10.1021/acsomega.2c01127},
pmid = {36406543}
}
@article{lin411442,
title = {Differences in gene expression patterns between cultured and natural Haloquadratum walsbyi ecotypes.},
author = {Rosselli R, Lopez-Perez M, Martin-Cuadrado AB, Rodriguez-Valera F, Bolhuis H.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1044446},
pmid = {36439805}
}
@article{lin411180,
title = {Analysis of the Brucella suis Twin Arginine Translocation System and Its Substrates Shows That It Is Essential for Viability.},
author = {Riquelme E, Omarova S, Ize B, O'Callaghan D.},
journal = {Infect Immun},
year = {2023},
doi = {10.1128/iai.00459-22},
pmid = {36448838}
}
@article{lin411022,
title = {Differences in homologous recombination and maintenance of heteropolyploidy between Haloferax volcanii and Haloferax mediterranei.},
author = {Dattani A, Sharon I, Shtifman-Segal E, Robinzon S, Gophna U, Allers T, Altman-Price N.},
journal = {G3 (Bethesda)},
year = {2023},
doi = {10.1093/g3journal/jkac306},
pmid = {36454095}
}
@article{lin411591,
title = {Electron cryo-microscopy reveals the structure of the archaeal thread filament.},
author = {Gaines MC, Isupov MN, Sivabalasarma S, Haque RU, McLaren M, Mollat CL, Tripp P, Neuhaus A, Gold VAM, Albers SV, Daum B.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-34652-4},
pmid = {36456543}
}
@article{lin411472,
title = {Dissection of Functional Domains of Orc1-2, the Archaeal Global DNA Damage-Responsive Regulator.},
author = {Liu X, Sun M, Xu R, Shen Y, Huang Q, Feng X, She Q.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms232314609},
pmid = {36498936}
}
@article{lin162864,
title = {Similar mutation rates but different mutation spectra in moderate and extremely halophilic archaea.},
author = {Kucukyildirim S, Ozdemirel HO, Lynch M.},
journal = {G3 (Bethesda)},
year = {2023},
doi = {10.1093/g3journal/jkac303},
pmid = {36519377}
}
@article{lin411427,
title = {Survival, metabolic activity, and ultrastructural damages of Antarctic black fungus in perchlorates media.},
author = {Cassaro A, Pacelli C, Onofri S.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.992077},
pmid = {36523839}
}
@article{lin411071,
title = {The Best of Both Worlds: Discovery-Driven Learning through a Lab-Seminar Approach.},
author = {Egan MS, Hogan K, Maupin-Furlow J, Pohlschroder M.},
journal = {J Microbiol Biol Educ},
year = {2022},
doi = {10.1128/jmbe.00031-22},
pmid = {36532226}
}
@article{lin411042,
title = {Hypochlorite Stress Assay for Phenotypic Analysis of the Halophilic Archaeon Haloferax volcanii Using an Improved Incubation Method and Growth Monitoring.},
author = {Mondragon P, Hwang S, Schmid A, Maupin-Furlow JA.},
journal = {Bio Protoc},
year = {2022},
doi = {10.21769/bioprotoc.4557},
pmid = {36532686}
}
@article{lin411191,
title = {tRFs and tRNA Halves: Novel Cellular Defenders in Multiple Biological Processes.},
author = {Hou J, Li Q, Wang J, Lu W.},
journal = {Curr Issues Mol Biol},
year = {2022},
doi = {10.3390/cimb44120405},
pmid = {36547066}
}
@article{lin411010,
title = {Protective Effects of Halite to Vacuum and Vacuum-Ultraviolet Radiation: A Potential Scenario During a Young Sun Superflare.},
author = {Abrevaya XC, Galante D, Tribelli PM, Oppezzo OJ, Nobrega F, Araujo GG, Rodrigues F, Odert P, Leitzinger M, Ricardi MM, Varela ME, Gallo T, Sanz-Forcada J, Ribas I, Porto de Mello GF, Rodler F, Cerini MF, Hanslmeier A, Horvath JE.},
journal = {Astrobiology},
year = {2023},
doi = {10.1089/ast.2022.0016},
pmid = {36577046}
}
@article{lin411716,
title = {Characterization of RNA-based and protein-only RNases P from bacteria encoding both enzyme types.},
author = {Gossringer M, Waber NB, Wiegard JC, Hartmann RK.},
journal = {RNA},
year = {2023},
doi = {10.1261/rna.079459.122},
pmid = {36604113}
}
@article{lin411350,
title = {Hypersaline Lake Urmia: a potential hotspot for microbial genomic variation.},
author = {Kheiri R, Mehrshad M, Pourbabaee AA, Ventosa A, Amoozegar MA.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-27429-2},
pmid = {36611086}
}
@article{lin411119,
title = {AepG is a glucuronosyltransferase involved in acidic exopolysaccharide synthesis and contributes to environmental adaptation of Haloarcula hispanica.},
author = {Pei C, Lu H, Ma J, Eichler J, Guan Z, Gao L, Liu L, Zhou H, Yang J, Jin C.},
journal = {J Biol Chem},
year = {2023},
doi = {10.1016/j.jbc.2023.102911},
pmid = {36642187}
}
@article{lin411498,
title = {Dynamics of the Synechococcus elongatus cytoskeletal GTPase FtsZ yields mechanistic and evolutionary insight into cyanobacterial and chloroplast FtsZs.},
author = {Porter KJ, Cao L, Osteryoung KW.},
journal = {J Biol Chem},
year = {2023},
doi = {10.1016/j.jbc.2023.102917},
pmid = {36657643}
}
@article{lin411231,
title = {Diversity and Potential Multifunctionality of Archaeal CetZ Tubulin-like Cytoskeletal Proteins.},
author = {Brown HJ, Duggin IG.},
journal = {Biomolecules},
year = {2023},
doi = {10.3390/biom13010134},
pmid = {36671519}
}
@article{lin411346,
title = {The Overlooked Microbiome-Considering Archaea and Eukaryotes Using Multiplex Nanopore-16S-/18S-rDNA-Sequencing: A Technical Report Focusing on Nasopharyngeal Microbiomes.},
author = {Baehren C, Pembaur A, Weil PP, Wewers N, Schult F, Wirth S, Postberg J, Aydin M.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24021426},
pmid = {36674956}
}
@article{lin411706,
title = {Diversity of Lysis-Resistant Bacteria and Archaea in the Polyextreme Environment of Salar de Huasco.},
author = {Corona Ramirez A, Cailleau G, Fatton M, Dorador C, Junier P.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.826117},
pmid = {36687602}
}
@article{lin411640,
title = {A paralog of Pcc1 is the fifth core subunit of the KEOPS tRNA-modifying complex in Archaea.},
author = {Daugeron MC, Missoury S, Da Cunha V, Lazar N, Collinet B, van Tilbeurgh H, Basta T.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-36210-y},
pmid = {36720870}
}
@article{lin411367,
title = {Explainable artificial intelligence as a reliable annotator of archaeal promoter regions.},
author = {Sganzerla Martinez G, Perez-Rueda E, Kumar A, Sarkar S, de Avila E Silva S.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-28571-7},
pmid = {36720898}
}
@article{lin411368,
title = {Pyridoxal 5'-phosphate synthesis and salvage in Bacteria and Archaea: predicting pathway variant distributions and holes.},
author = {Denise R, Babor J, Gerlt JA, de Crecy-Lagard V.},
journal = {Microb Genom},
year = {2023},
doi = {10.1099/mgen.0.000926},
pmid = {36729913}
}
@article{lin411435,
title = {An old friend with a new face: tRNA-derived small RNAs with big regulatory potential in cancer biology.},
author = {Di Fazio A, Gullerova M.},
journal = {Br J Cancer},
year = {2023},
doi = {10.1038/s41416-023-02191-4},
pmid = {36759729}
}
@article{lin411073,
title = {The Hypersaline Archaeal Histones HpyA and HstA Are DNA Binding Proteins That Defy Categorization According to Commonly Used Functional Criteria.},
author = {Sakrikar S, Hackley RK, Martinez-Pastor M, Darnell CL, Vreugdenhil A, Schmid AK.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.03449-22},
pmid = {36779711}
}
@article{lin411626,
title = {Bacterial origins of thymidylate metabolism in Asgard archaea and Eukarya.},
author = {Filee J, Becker HF, Mellottee L, Eddine RZ, Li Z, Yin W, Lambry JC, Liebl U, Myllykallio H.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-36487-z},
pmid = {36792581}
}
@article{lin411131,
title = {Agl28 and Agl29 are key components of a Halobacterium salinarum N-glycosylation pathway.},
author = {Vershinin Z, Zaretsky M, Guan Z, Eichler J.},
journal = {FEMS Microbiol Lett},
year = {2023},
doi = {10.1093/femsle/fnad017},
pmid = {36866517}
}
@article{lin411770,
title = {Molecular acclimation of Halobacterium salinarum to halite brine inclusions.},
author = {Favreau C, Tribondeau A, Marugan M, Guyot F, Alpha-Bazin B, Marie A, Puppo R, Dufour T, Huguet A, Zirah S, Kish A.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1075274},
pmid = {36875534}
}
@article{lin411535,
title = {The role and mechanism of action of tRNA-derived fragments in the diagnosis and treatment of malignant tumors.},
author = {Gong M, Deng Y, Xiang Y, Ye D.},
journal = {Cell Commun Signal},
year = {2023},
doi = {10.1186/s12964-023-01079-3},
pmid = {36964534}
}
@article{lin411021,
title = {Bioengineering of air-filled protein nanoparticles by genetic and chemical functionalization.},
author = {Karan R, Renn D, Nozue S, Zhao L, Habuchi S, Allers T, Rueping M.},
journal = {J Nanobiotechnology},
year = {2023},
doi = {10.1186/s12951-023-01866-7},
pmid = {36966297}
}
@article{lin411271,
title = {Cellular differentiation into hyphae and spores in halophilic archaea.},
author = {Tang SK, Zhi XY, Zhang Y, Makarova KS, Liu BB, Zheng GS, Zhang ZP, Zheng HJ, Wolf YI, Zhao YR, Jiang SH, Chen XM, Li EY, Zhang T, Chen PR, Feng YZ, Xiang MX, Lin ZQ, Shi JH, Chang C, Zhang X, Li R, Lou K, Wang Y, Chang L, Yin M, Yang LL, Gao HY, Zhang ZK, Tao TS, Guan TW, He FC, Lu YH, Cui HL, Koonin EV, Zhao GP, Xu P.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-37389-w},
pmid = {37005419}
}
@article{lin411526,
title = {The thiolation of uridine 34 in tRNA, which controls protein translation, depends on a [4Fe-4S] cluster in the archaeum Methanococcus maripaludis.},
author = {Bimai O, Legrand P, Ravanat JL, Touati N, Zhou J, He N, Lenon M, Barras F, Fontecave M, Golinelli-Pimpaneau B.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-32423-9},
pmid = {37005440}
}
@article{lin411542,
title = {Analysis of the external signals driving the transcriptional regulation of the main genes involved in denitrification in Haloferax mediterranei.},
author = {Miralles-Robledillo JM, Martinez-Espinosa RM, Pire C.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1109550},
pmid = {37007523}
}
@article{lin411347,
title = {The extremophile Picrophilus torridus carries a DNA adenine methylase M.PtoI that is part of a Type I restriction-modification system.},
author = {Gulati P, Singh A, Goel M, Saha S.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1126750},
pmid = {37007530}
}
@article{lin411118,
title = {Improving the genetic system for Halorubrum lacusprofundi to allow in-frame deletions.},
author = {Gebhard LJ, Duggin IG, Erdmann S.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1095621},
pmid = {37065119}
}
@article{lin411033,
title = {Bioactive molecules from haloarchaea: Scope and prospects for industrial and therapeutic applications.},
author = {Moopantakath J, Imchen M, Anju VT, Busi S, Dyavaiah M, Martinez-Espinosa RM, Kumavath R.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1113540},
pmid = {37065149}
}
@article{lin411521,
title = {Valorization of Waste from Argan Seeds for Polyhydroxybutyrate Production Using Bacterial Strains Isolated from Argan Soils.},
author = {Aragosa A, Specchia V, Frigione M.},
journal = {Polymers (Basel)},
year = {2023},
doi = {10.3390/polym15081972},
pmid = {37112119}
}
@article{lin411280,
title = {Specific DNA binding of archaeal histones HMfA and HMfB.},
author = {Erkelens AM, Henneman B, van der Valk RA, Kirolos NCS, Dame RT.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1166608},
pmid = {37143534}
}
@article{lin410975,
title = {Nanopore-based RNA sequencing deciphers the formation, processing, and modification steps of rRNA intermediates in archaea.},
author = {Grunberger F, Juttner M, Knuppel R, Ferreira-Cerca S, Grohmann D.},
journal = {RNA},
year = {2023},
doi = {10.1261/rna.079636.123},
pmid = {37192814}
}
@article{lin411722,
title = {Recent advances and perspectives in nucleotide second messenger signaling in bacteria.},
author = {Hengge R, Pruteanu M, Stulke J, Tschowri N, Turgay K.},
journal = {Microlife},
year = {2023},
doi = {10.1093/femsml/uqad015},
pmid = {37223732}
}
@article{lin411107,
title = {An archaeal Cas3 protein facilitates rapid recovery from DNA damage.},
author = {Miezner G, Turgeman-Grott I, Zatopek KM, Gardner AF, Reshef L, Choudhary DK, Alstetter M, Allers T, Marchfelder A, Gophna U.},
journal = {Microlife},
year = {2023},
doi = {10.1093/femsml/uqad007},
pmid = {37223740}
}
@article{lin411095,
title = {Revealing the small proteome of Haloferax volcanii by combining ribosome profiling and small-protein optimized mass spectrometry.},
author = {Hadjeras L, Bartel J, Maier LK, Maass S, Vogel V, Svensson SL, Eggenhofer F, Gelhausen R, Muller T, Alkhnbashi OS, Backofen R, Becher D, Sharma CM, Marchfelder A.},
journal = {Microlife},
year = {2023},
doi = {10.1093/femsml/uqad001},
pmid = {37223747}
}
@article{lin411669,
title = {Widespread CRISPR-derived RNA regulatory elements in CRISPR-Cas systems.},
author = {Shmakov SA, Barth ZK, Makarova KS, Wolf YI, Brover V, Peters JE, Koonin EV.},
journal = {Nucleic Acids Res},
year = {2023},
doi = {10.1093/nar/gkad495},
pmid = {37283088}
}
@article{lin411036,
title = {Putative nucleotide-based second messengers in archaea.},
author = {van der Does C, Braun F, Ren H, Albers SV.},
journal = {Microlife},
year = {2023},
doi = {10.1093/femsml/uqad027},
pmid = {37305433}
}
@article{lin411273,
title = {Comprehensive Bioinformatics Analysis of the Biodiversity of Lsm Proteins in the Archaea Domain.},
author = {Paya G, Bautista V, Camacho M, Esclapez J, Bonete MJ.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11051196},
pmid = {37317170}
}
@article{lin411570,
title = {Functional diversity of nanohaloarchaea within xylan-degrading consortia.},
author = {Reva O, Messina E, La Cono V, Crisafi F, Smedile F, La Spada G, Marturano L, Selivanova EA, Rohde M, Krupovic M, Yakimov MM.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1182464},
pmid = {37323909}
}
@article{lin411355,
title = {Dissecting the Arginine and Lysine Biosynthetic Pathways and Their Relationship in Haloarchaeon Natrinema gari J7-2 via Endogenous CRISPR-Cas System-Based Genome Editing.},
author = {Wu Y, Zhang J, Wang B, Zhang Y, Li H, Liu Y, Yin J, He D, Luo H, Gan F, Tang B, Tang XF.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.00288-23},
pmid = {37347159}
}
@article{lin410957,
title = {Effects of chaotropic salts on global proteome stability in halophilic archaea: Implications for life signatures on Mars.},
author = {Carre L, Gonzalez D, Girard E, Franzetti B.},
journal = {Environ Microbiol},
year = {2023},
doi = {10.1111/1462-2920.16451},
pmid = {37349893}
}
@article{lin411045,
title = {Insights into the Lysine Acetylome of the Haloarchaeon Haloferax volcanii during Oxidative Stress by Quantitative SILAC-Based Proteomics.},
author = {Couto-Rodriguez RL, Koh J, Chen S, Maupin-Furlow JA.},
journal = {Antioxidants (Basel)},
year = {2023},
doi = {10.3390/antiox12061203},
pmid = {37371933}
}
@article{lin410996,
title = {Discovery of a novel transcriptional regulator of sugar catabolism in archaea.},
author = {Johnsen U, Ortjohann M, Reinhardt A, Turner JM, Stratton C, Weber KR, Sanchez KM, Maupin-Furlow J, Davies C, Schonheit P.},
journal = {Mol Microbiol},
year = {2023},
doi = {10.1111/mmi.15114},
pmid = {37387308}
}
@article{lin411132,
title = {Transcriptome profiling of Nudix hydrolase gene deletions in the thermoacidophilic archaeon Sulfolobus acidocaldarius.},
author = {Breuer R, Gomes-Filho JV, Yuan J, Randau L.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1197877},
pmid = {37396357}
}
@article{lin411020,
title = {Archaeal Hel308 suppresses recombination through a catalytic switch that controls DNA annealing.},
author = {Lever RJ, Simmons E, Gamble-Milner R, Buckley RJ, Harrison C, Parkes AJ, Mitchell L, Gausden JA, Skulj S, Bertosa B, Bolt EL, Allers T.},
journal = {Nucleic Acids Res},
year = {2023},
doi = {10.1093/nar/gkad572},
pmid = {37409572}
}
@article{lin411714,
title = {Denitrification in hypersaline and coastal environments.},
author = {Torregrosa-Crespo J, Miralles-Robledillo JM, Bernabeu E, Pire C, Martinez-Espinosa RM.},
journal = {FEMS Microbiol Lett},
year = {2023},
doi = {10.1093/femsle/fnad066},
pmid = {37422443}
}
@article{lin411087,
title = {RecJ3/4-aRNase J form a Ubl-associated nuclease complex functioning in survival against DNA damage in Haloferax volcanii.},
author = {Jia H, Dantuluri S, Margulies S, Smith V, Lever R, Allers T, Koh J, Chen S, Maupin-Furlow JA.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.00852-23},
pmid = {37458473}
}
@article{lin410952,
title = {Archaeal type IV pili stabilize Haloferax volcanii biofilms in flow.},
author = {Odermatt PD, Nussbaum P, Monnappa S, Tala L, Li Z, Sivabalasarma S, Albers SV, Persat A.},
journal = {Curr Biol},
year = {2023},
doi = {10.1016/j.cub.2023.06.055},
pmid = {37473762}
}
@article{lin411445,
title = {Influence of N-Glycosylation on Virus-Host Interactions in Halorubrum lacusprofundi.},
author = {Gebhard LJ, Vershinin Z, Alarcon-Schumacher T, Eichler J, Erdmann S.},
journal = {Viruses},
year = {2023},
doi = {10.3390/v15071469},
pmid = {37515157}
}
@article{lin411421,
title = {Structural and functional studies of PCNA from African swine fever virus.},
author = {Shao Z, Yang J, Gao Y, Zhang Y, Zhao X, Shao Q, Zhang W, Cao C, Liu H, Gan J.},
journal = {J Virol},
year = {2023},
doi = {10.1128/jvi.00748-23},
pmid = {37534905}
}
@article{lin410967,
title = {Functional expression of an antimicrobial peptide, belonging to halocin C8 family, from Natrinema sp. RNS21 in Escherichia coli.},
author = {Ri CH, Li SR, Paek CI, Kim YS.},
journal = {Extremophiles},
year = {2023},
doi = {10.1007/s00792-023-01308-0},
pmid = {37548679}
}
@article{lin411675,
title = {Rhizosphere-dwelling halophilic archaea: a potential candidate for alleviating salinity-associated stress in agriculture.},
author = {Naitam MG, Ramakrishnan B, Grover M, Kaushik R.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1212349},
pmid = {37564293}
}
@article{lin411351,
title = {Multimeric structure of a subfamily III haloalkane dehalogenase-like enzyme solved by combination of cryo-EM and x-ray crystallography.},
author = {Chmelova K, Gao T, Polak M, Schenkmayerova A, Croll TI, Shaikh TR, Skarupova J, Chaloupkova R, Diederichs K, Read RJ, Damborsky J, Novacek J, Marek M.},
journal = {Protein Sci},
year = {2023},
doi = {10.1002/pro.4751},
pmid = {37574754}
}
@article{lin410991,
title = {A sweet new set of inducible and constitutive promoters in Haloferax volcanii.},
author = {Rados T, Andre K, Cerletti M, Bisson A.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1204876},
pmid = {37637112}
}
@article{lin411580,
title = {Transcriptional and translational dynamics underlying heat shock response in the thermophilic crenarchaeon Sulfolobus acidocaldarius.},
author = {Baes R, Grunberger F, Pyr Dit Ruys S, Couturier M, De Keulenaer S, Skevin S, Van Nieuwerburgh F, Vertommen D, Grohmann D, Ferreira-Cerca S, Peeters E.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.03593-22},
pmid = {37642423}
}
@article{lin411516,
title = {Non-canonical transcriptional start sites in E. coli O157:H7 EDL933 are regulated and appear in surprisingly high numbers.},
author = {Zehentner B, Scherer S, Neuhaus K.},
journal = {BMC Microbiol},
year = {2023},
doi = {10.1186/s12866-023-02988-6},
pmid = {37653502}
}
@article{lin411453,
title = {Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis.},
author = {Qi L, Liu H, Gao J, Deng K, Wang X, Dong X, Li J.},
journal = {RNA Biol},
year = {2023},
doi = {10.1080/15476286.2023.2258035},
pmid = {37731260}
}
@article{lin411154,
title = {Probing archaeal cell biology: exploring the use of dyes in the imaging of Sulfolobus cells.},
author = {Cezanne A, Hoogenberg B, Baum B.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1233032},
pmid = {37731920}
}
@article{lin411120,
title = {One Advantage of Being Polyploid: Prokaryotes of Various Phylogenetic Groups Can Grow in the Absence of an Environmental Phosphate Source at the Expense of Their High Genome Copy Numbers.},
author = {Bruck P, Wasser D, Soppa J.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11092267},
pmid = {37764113}
}
@article{lin411290,
title = {Identification, Antioxidant Capacity, and Matrix Metallopeptidase 9 (MMP-9) In Silico Inhibition of Haloarchaeal Carotenoids from Natronococcus sp. and Halorubrum tebenquichense.},
author = {Delgado-Garcia M, Gomez-Secundino O, Rodriguez JA, Mateos-Diaz JC, Muller-Santos M, Aguilar CN, Camacho-Ruiz RM.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11092344},
pmid = {37764188}
}
@article{lin411317,
title = {Characterization of an archaeal virus-host system reveals massive genomic rearrangements in a laboratory strain.},
author = {Mercier C, Thies D, Zhong L, Raftery MJ, Erdmann S.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1274068},
pmid = {37789858}
}
@article{lin411615,
title = {Revisiting evolutionary trajectories and the organization of the Pleolipoviridae family.},
author = {Alarcon-Schumacher T, Lucking D, Erdmann S.},
journal = {PLoS Genet},
year = {2023},
doi = {10.1371/journal.pgen.1010998},
pmid = {37831715}
}
@article{lin411009,
title = {"Influence of plasmids, selection markers and auxotrophic mutations on Haloferax volcanii cell shape plasticity".},
author = {Patro M, Duggin IG, Albers SV, Ithurbide S.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1270665},
pmid = {37840741}
}
@article{lin410978,
title = {Archaeal Tubulin-like Proteins Modify Cell Shape in Haloferax volcanii during Early Biofilm Development.},
author = {Cooper A, Makkay AM, Papke RT.},
journal = {Genes (Basel)},
year = {2023},
doi = {10.3390/genes14101861},
pmid = {37895209}
}
@article{lin411480,
title = {Synthesis and degradation of the cyclic dinucleotide messenger c-di-AMP in the hyperthermophilic archaeon Pyrococcus yayanosii.},
author = {Jin Z, Song D, Wang WW, Feng L, Li ZX, Chen HF, Xiao X, Liu XP.},
journal = {Protein Sci},
year = {2023},
doi = {10.1002/pro.4829},
pmid = {37921047}
}
@article{lin410992,
title = {The chromatin landscape of the euryarchaeon Haloferax volcanii.},
author = {Marinov GK, Bagdatli ST, Wu T, He C, Kundaje A, Greenleaf WJ.},
journal = {Genome Biol},
year = {2023},
doi = {10.1186/s13059-023-03095-5},
pmid = {37932847}
}
@article{lin411631,
title = {Culexarchaeia, a novel archaeal class of anaerobic generalists inhabiting geothermal environments.},
author = {Kohtz AJ, Jay ZJ, Lynes MM, Krukenberg V, Hatzenpichler R.},
journal = {ISME Commun},
year = {2022},
doi = {10.1038/s43705-022-00175-8},
pmid = {37938354}
}
@article{lin411251,
title = {Salactin, a dynamically unstable actin homolog in Haloarchaea.},
author = {Zheng J, Mallon J, Lammers A, Rados T, Litschel T, Moody ERR, Ramirez-Diaz DA, Schmid A, Williams TA, Bisson-Filho AW, Garner E.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.02272-23},
pmid = {37966230}
}
@article{lin411127,
title = {Identification of NAD-RNA species and ADPR-RNA decapping in Archaea.},
author = {Gomes-Filho JV, Breuer R, Morales-Filloy HG, Pozhydaieva N, Borst A, Paczia N, Soppa J, Hofer K, Jaschke A, Randau L.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-43377-x},
pmid = {37989750}
}
@article{lin411052,
title = {TroR is the primary regulator of the iron homeostasis transcription network in the halophilic archaeon Haloferax volcanii.},
author = {Martinez Pastor M, Sakrikar S, Hwang S, Hackley RK, Soborowski AL, Maupin-Furlow JA, Schmid AK.},
journal = {Nucleic Acids Res},
year = {2024},
doi = {10.1093/nar/gkad997},
pmid = {37994787}
}
@article{lin411077,
title = {Neighboring inteins interfere with one another's homing capacity.},
author = {Turgeman-Grott I, Arsenault D, Yahav D, Feng Y, Miezner G, Naki D, Peri O, Papke RT, Gogarten JP, Gophna U.},
journal = {PNAS Nexus},
year = {2023},
doi = {10.1093/pnasnexus/pgad354},
pmid = {38024399}
}
@article{lin411044,
title = {Unidirectional gene pairs in archaea and bacteria require overlaps or very short intergenic distances for translational coupling via termination-reinitiation and often encode subunits of heteromeric complexes.},
author = {Huber M, Vogel N, Borst A, Pfeiffer F, Karamycheva S, Wolf YI, Koonin EV, Soppa J.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1291523},
pmid = {38029211}
}
@article{lin411283,
title = {Genome-wide transcriptional response to silver stress in extremely halophilic archaeon Haloferax alexandrinus DSM 27206 T.},
author = {Buda DM, Szekeres E, Tudoran LB, Esclapez J, Banciu HL.},
journal = {BMC Microbiol},
year = {2023},
doi = {10.1186/s12866-023-03133-z},
pmid = {38049746}
}
@article{lin162858,
title = {Lipidomic chemotaxonomy aligned with phylogeny of Halobacteria.},
author = {Yao W, Zhang W, He W, Xiao W, Chen Y, Zhu Y, Zheng F, Zhang C.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1297600},
pmid = {38075936}
}
@article{lin411577,
title = {In silico discovery of the myxosortases that process MYXO-CTERM and three novel prokaryotic C-terminal protein-sorting signals that share invariant Cys residues.},
author = {Haft DH.},
journal = {J Bacteriol},
year = {2024},
doi = {10.1128/jb.00173-23},
pmid = {38084967}
}
@article{lin411413,
title = {Chromosome architecture in an archaeal species naturally lacking structural maintenance of chromosomes proteins.},
author = {Badel C, Bell SD.},
journal = {Nat Microbiol},
year = {2024},
doi = {10.1038/s41564-023-01540-6},
pmid = {38110698}
}
@article{lin411175,
title = {Circular RNA: A promising new star of vaccine.},
author = {Xie J, Ye F, Deng X, Tang Y, Liang JY, Huang X, Sun Y, Tang H, Lei J, Zheng S, Zou Y.},
journal = {J Transl Int Med},
year = {2023},
doi = {10.2478/jtim-2023-0122},
pmid = {38130633}
}
@article{lin411311,
title = {Disentangling a metabolic cross-feeding in a halophilic archaea-bacteria consortium.},
author = {Medina-Chavez NO, Torres-Cerda A, Chacon JM, Harcombe WR, De la Torre-Zavala S, Travisano M.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1276438},
pmid = {38179456}
}
@article{lin411361,
title = {Analysis of Lsm Protein-Mediated Regulation in the Haloarchaeon Haloferax mediterranei.},
author = {Paya G, Bautista V, Pastor-Soler S, Camacho M, Esclapez J, Bonete MJ.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25010580},
pmid = {38203750}
}
@article{lin411000,
title = {TbsP and TrmB jointly regulate gapII to influence cell development phenotypes in the archaeon Haloferax volcanii.},
author = {Hackley RK, Hwang S, Herb JT, Bhanap P, Lam K, Vreugdenhil A, Darnell CL, Pastor MM, Martin JH, Maupin-Furlow JA, Schmid AK.},
journal = {Mol Microbiol},
year = {2024},
doi = {10.1111/mmi.15225},
pmid = {38204420}
}
@article{lin411161,
title = {A conserved transcription factor controls gluconeogenesis via distinct targets in hypersaline-adapted archaea with diverse metabolic capabilities.},
author = {Hackley RK, Vreugdenhil-Hayslette A, Darnell CL, Schmid AK.},
journal = {PLoS Genet},
year = {2024},
doi = {10.1371/journal.pgen.1011115},
pmid = {38227606}
}
@article{lin411247,
title = {Structure of the two-component S-layer of the archaeon Sulfolobus acidocaldarius.},
author = {Gambelli L, McLaren M, Conners R, Sanders K, Gaines MC, Clark L, Gold VAM, Kattnig D, Sikora M, Hanus C, Isupov MN, Daum B.},
journal = {Elife},
year = {2024},
doi = {10.7554/elife.84617},
pmid = {38251732}
}
@article{lin411032,
title = {Identification of structural and regulatory cell-shape determinants in Haloferax volcanii.},
author = {Schiller H, Hong Y, Kouassi J, Rados T, Kwak J, DiLucido A, Safer D, Marchfelder A, Pfeiffer F, Bisson A, Schulze S, Pohlschroder M.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-45196-0},
pmid = {38360755}
}
@article{lin411308,
title = {Members of the class Candidatus Ordosarchaeia imply an alternative evolutionary scenario from methanogens to haloarchaea.},
author = {Zhao D, Zhang S, Chen J, Zhao J, An P, Xiang H.},
journal = {ISME J},
year = {2024},
doi = {10.1093/ismejo/wrad033},
pmid = {38366248}
}
@article{lin411216,
title = {Diversity, origin, and evolution of the ESCRT systems.},
author = {Makarova KS, Tobiasson V, Wolf YI, Lu Z, Liu Y, Zhang S, Krupovic M, Li M, Koonin EV.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.00335-24},
pmid = {38380930}
}
@article{lin411050,
title = {Extracellular vesicle formation in Euryarchaeota is driven by a small GTPase.},
author = {Mills J, Gebhard LJ, Schubotz F, Shevchenko A, Speth DR, Liao Y, Duggin IG, Marchfelder A, Erdmann S.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2311321121},
pmid = {38408251}
}
@article{lin411053,
title = {Cooperation between two modes for DNA replication initiation in the archaeon Thermococcus barophilus.},
author = {Mc Teer L, Moalic Y, Cueff-Gauchard V, Catchpole R, Hogrel G, Lu Y, Laurent S, Hemon M, Aube J, Leroy E, Roussel E, Oberto J, Flament D, Dulermo R.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.03200-23},
pmid = {38421162}
}
@article{lin410948,
title = {Widespread photosynthesis reaction centre barrel proteins are necessary for haloarchaeal cell division.},
author = {Zhao S, Makarova KS, Zheng W, Zhan L, Wan Q, Liu Y, Gong H, Krupovic M, Lutkenhaus J, Chen X, Koonin EV, Du S.},
journal = {Nat Microbiol},
year = {2024},
doi = {10.1038/s41564-024-01615-y},
pmid = {38443574}
}
@article{lin410947,
title = {Proteins containing photosynthetic reaction centre domains modulate FtsZ-based archaeal cell division.},
author = {Nussbaum P, Kureisaite-Ciziene D, Bellini D, van der Does C, Kojic M, Taib N, Yeates A, Tourte M, Gribaldo S, Loose M, Lowe J, Albers SV.},
journal = {Nat Microbiol},
year = {2024},
doi = {10.1038/s41564-024-01600-5},
pmid = {38443575}
}
@article{lin411519,
title = {Revisiting microbial exopolysaccharides: a biocompatible and sustainable polymeric material for multifaceted biomedical applications.},
author = {Kiran NS, Yashaswini C, Singh S, Prajapati BG.},
journal = {3 Biotech},
year = {2024},
doi = {10.1007/s13205-024-03946-3},
pmid = {38449708}
}
@article{lin411056,
title = {Development of a genetic system for Haloferax gibbonsii LR2-5, model host for haloarchaeal viruses.},
author = {Tittes C, Nijland J, Schoentag AMC, Hackl T, Di Cianni N, Marchfelder A, Quax TEF.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.00129-24},
pmid = {38470030}
}
@article{lin410942,
title = {Identification and characterization of a novel type of ketohexokinase from the haloarchaeon Haloferax volcanii.},
author = {Ortjohann M, Schonheit P.},
journal = {FEMS Microbiol Lett},
year = {2024},
doi = {10.1093/femsle/fnae026},
pmid = {38587824}
}
@article{lin411505,
title = {Interplay of intracellular and trans-cellular DNA methylation in natural archaeal consortia.},
author = {Reva ON, La Cono V, Crisafi F, Smedile F, Mudaliyar M, Ghosal D, Giuliano L, Krupovic M, Yakimov MM.},
journal = {Environ Microbiol Rep},
year = {2024},
doi = {10.1111/1758-2229.13258},
pmid = {38589217}
}
@article{lin411080,
title = {Structural basis of translation inhibition by a valine tRNA-derived fragment.},
author = {Wu Y, Ni MT, Wang YH, Wang C, Hou H, Zhang X, Zhou J.},
journal = {Life Sci Alliance},
year = {2024},
doi = {10.26508/lsa.202302488},
pmid = {38599770}
}
@article{lin411115,
title = {Using the pan-genomic framework for the discovery of genomic islands in the haloarchaeon Halorubrum ezzemoulense.},
author = {Feng Y, Arsenault D, Louyakis AS, Altman-Price N, Gophna U, Papke RT, Gogarten JP.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.00408-24},
pmid = {38619241}
}
@article{lin411409,
title = {Cell cycle dependent coordination of surface layer biogenesis in Caulobacter crescentus.},
author = {Herdman M, Isbilir B, von Kugelgen A, Schulze U, Wainman A, Bharat TAM.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-47529-5},
pmid = {38637514}
}
@article{lin411148,
title = {Transcriptomic evidence for an energetically advantageous relationship between Syntrophomonas wolfei and Methanothrix soehngenii.},
author = {Besteman MS, Doloman A, Sousa DZ.},
journal = {Environ Microbiol Rep},
year = {2024},
doi = {10.1111/1758-2229.13276},
pmid = {38733087}
}
@article{lin411204,
title = {Ultrastructural insights into cellular organization, energy storage and ribosomal dynamics of an ammonia-oxidizing archaeon from oligotrophic oceans.},
author = {Zhou Y, Yan A, Yang J, He W, Guo S, Li Y, Wu J, Dai Y, Pan X, Cui D, Pereira O, Teng W, Bi R, Chen S, Fan L, Wang P, Liao Y, Qin W, Sui SF, Zhu Y, Zhang C, Liu Z.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1367658},
pmid = {38737410}
}
@article{lin411130,
title = {The Archaeal Cell Cycle.},
author = {Cezanne A, Foo S, Kuo YW, Baum B.},
journal = {Annu Rev Cell Dev Biol},
year = {2024},
doi = {10.1146/annurev-cellbio-111822-120242},
pmid = {38748857}
}
@article{lin411043,
title = {Cloning, Expression, Characterization and Immobilization of a Recombinant Carboxylesterase from the Halophilic Archaeon, Halobacterium salinarum NCR-1.},
author = {Ortega-de la Rosa ND, Romero-Borbon E, Rodriguez JA, Camacho-Ruiz A, Cordova J.},
journal = {Biomolecules},
year = {2024},
doi = {10.3390/biom14050534},
pmid = {38785941}
}
@article{lin410941,
title = {A vector system for single and tandem expression of cloned genes and multi-colour fluorescent tagging in Haloferax volcanii.},
author = {Ithurbide S, de Silva RT, Brown HJ, Shinde V, Duggin IG.},
journal = {Microbiology (Reading)},
year = {2024},
doi = {10.1099/mic.0.001461},
pmid = {38787390}
}
@article{lin411219,
title = {Functional Analysis of the Major Pilin Proteins of Type IV Pili in Streptococcus sanguinis CGMH010.},
author = {Chen YM, Yang YC, Shieh HR, Lin YJ, Ke WJ, Chiu CH.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25105402},
pmid = {38791440}
}
@article{lin411244,
title = {Sequencing accuracy and systematic errors of nanopore direct RNA sequencing.},
author = {Liu-Wei W, van der Toorn W, Bohn P, Holzer M, Smyth RP, von Kleist M.},
journal = {BMC Genomics},
year = {2024},
doi = {10.1186/s12864-024-10440-w},
pmid = {38807060}
}
@article{lin411291,
title = {Transcriptomic profiling of haloarchaeal denitrification through RNA-Seq analysis.},
author = {Miralles-Robledillo JM, Martinez-Espinosa RM, Pire C.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.00571-24},
pmid = {38814058}
}
@article{lin411653,
title = {The archaeal KEOPS complex possesses a functional Gon7 homolog and has an essential function independent of the cellular t6A modification level.},
author = {Wu P, Gan Q, Zhang X, Yang Y, Xiao Y, She Q, Ni J, Huang Q, Shen Y.},
journal = {mLife},
year = {2023},
doi = {10.1002/mlf2.12051},
pmid = {38818338}
}
@article{lin411016,
title = {Involvement of ArlI, ArlJ, and CirA in archaeal type IV pilin-mediated motility regulation.},
author = {Chatterjee P, Garcia MA, Cote JA, Yun K, Legerme GP, Habib R, Tripepi M, Young C, Kulp D, Dyall-Smith M, Pohlschroder M.},
journal = {J Bacteriol},
year = {2024},
doi = {10.1128/jb.00089-24},
pmid = {38819156}
}
@article{lin411124,
title = {SANS reveals lipid-dependent oligomerization of an intramembrane aspartyl protease from H. volcanii.},
author = {Thomas GM, Wu Y, Leite W, Pingali SV, Weiss KL, Grant AJ, Diggs MW, Schmidt-Krey I, Gutishvili G, Gumbart JC, Urban VS, Lieberman RL.},
journal = {Biophys J},
year = {2024},
doi = {10.1016/j.bpj.2024.05.029},
pmid = {38824390}
}
@article{lin410955,
title = {Taxonomic Reframe of Some Species of the Genera Haloferax and Halobellus.},
author = {Quadri SR, Jin P, Wang K, Qiao H, Dhulappa A, Luo ZH, Wang S, Narsing Rao MP.},
journal = {Curr Microbiol},
year = {2024},
doi = {10.1007/s00284-024-03695-9},
pmid = {38850425}
}
@article{lin410940,
title = {A systematic analysis of affinity tags in the haloarchaeal expression system, Haloferax volcanii for protein purification.},
author = {Karan R, Renn D, Allers T, Rueping M.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1403623},
pmid = {38873150}
}
@article{lin411121,
title = {Rft1 catalyzes lipid-linked oligosaccharide translocation across the ER membrane.},
author = {Chen S, Pei CX, Xu S, Li H, Liu YS, Wang Y, Jin C, Dean N, Gao XD.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-48999-3},
pmid = {38886340}
}
@article{lin411048,
title = {ArcS from Thermococcus kodakarensis transfers L-lysine to preQ0 nucleoside derivatives as minimum substrate RNAs.},
author = {Fujita S, Sugio Y, Kawamura T, Yamagami R, Oka N, Hirata A, Yokogawa T, Hori H.},
journal = {J Biol Chem},
year = {2024},
doi = {10.1016/j.jbc.2024.107505},
pmid = {38944122}
}
@article{lin411065,
title = {Functional redundancy of ubiquitin-like sulfur-carrier proteins facilitates flexible, efficient sulfur utilization in the primordial archaeon Thermococcus kodakarensis.},
author = {Hidese R, Ohira T, Sakakibara S, Suzuki T, Shigi N, Fujiwara S.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.00534-24},
pmid = {38975783}
}
@article{lin411322,
title = {Perturbed N-glycosylation of Halobacterium salinarum archaellum filaments leads to filament bundling and compromised cell motility.},
author = {Sofer S, Vershinin Z, Mashni L, Zalk R, Shahar A, Eichler J, Grossman-Haham I.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-50277-1},
pmid = {38992036}
}
@article{lin410983,
title = {C(P)XCG Proteins of Haloferax volcanii with Predicted Zinc Finger Domains: The Majority Bind Zinc, but Several Do Not.},
author = {Uresin D, Schulte J, Morgner N, Soppa J.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25137166},
pmid = {39000272}
}
@article{lin411564,
title = {Osmoregulation in freshwater anaerobic methane-oxidizing archaea under salt stress.},
author = {Echeveste Medrano MJ, Leu AO, Pabst M, Lin Y, McIlroy SJ, Tyson GW, van Ede J, Sanchez-Andrea I, Jetten MSM, Jansen R, Welte CU.},
journal = {ISME J},
year = {2024},
doi = {10.1093/ismejo/wrae137},
pmid = {39030685}
}
@article{lin410997,
title = {Intermolecular Gene Conversion for the Equalization of Genome Copies in the Polyploid Haloarchaeon Haloferax volcanii: Identification of Important Proteins.},
author = {Ozer H, Wasser D, Sandner L, Soppa J.},
journal = {Genes (Basel)},
year = {2024},
doi = {10.3390/genes15070861},
pmid = {39062640}
}
@article{lin411199,
title = {Characterization of protein glycosylation in an Asgard archaeon.},
author = {Nakagawa S, Imachi H, Shimamura S, Yanaka S, Yagi H, Yagi-Utsumi M, Sakai H, Kato S, Ohkuma M, Kato K, Takai K.},
journal = {BBA Adv},
year = {2024},
doi = {10.1016/j.bbadva.2024.100118},
pmid = {39081798}
}
@article{lin411055,
title = {Chromatin and gene regulation in archaea.},
author = {Blombach F, Werner F.},
journal = {Mol Microbiol},
year = {2025},
doi = {10.1111/mmi.15302},
pmid = {39096085}
}
@article{lin411116,
title = {The role of tRNA identity elements in aminoacyl-tRNA editing.},
author = {Cruz E, Vargas-Rodriguez O.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1437528},
pmid = {39101037}
}
@article{lin411167,
title = {Nature should be the model for microbial sciences.},
author = {Baker BJ, Hyde E, Leao P.},
journal = {J Bacteriol},
year = {2024},
doi = {10.1128/jb.00228-24},
pmid = {39158294}
}
@article{lin411249,
title = {N-linked protein glycosylation in Nanobdellati (formerly DPANN) archaea and their hosts.},
author = {Nakagawa S, Sakai HD, Shimamura S, Takamatsu Y, Kato S, Yagi H, Yanaka S, Yagi-Utsumi M, Kurosawa N, Ohkuma M, Kato K, Takai K.},
journal = {J Bacteriol},
year = {2024},
doi = {10.1128/jb.00205-24},
pmid = {39194224}
}
@article{lin410968,
title = {Iron starvation results in up-regulation of a probable Haloferax volcanii siderophore transporter.},
author = {Sailer AL, Jevtic Z, Stoll B, Wortz J, Sharma K, Urlaub H, Dyall-Smith M, Pfeiffer F, Marchfelder A, Lenz C.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1422844},
pmid = {39206359}
}
@article{lin411023,
title = {Ion-combination specific effects driving the enzymatic activity of halophilic alcohol dehydrogenase 2 from Haloferax volcanii in aqueous ionic liquid solvent mixtures.},
author = {Schindl A, Hagen ML, Cooley I, Jager CM, Warden AC, Zelzer M, Allers T, Croft AK.},
journal = {RSC Sustain},
year = {2024},
doi = {10.1039/d3su00412k},
pmid = {39211508}
}
@article{lin411339,
title = {An improved CRISPR and CRISPR interference (CRISPRi) toolkit for engineering the model methanogenic archaeon Methanococcus maripaludis.},
author = {Du Q, Wei Y, Zhang L, Ren D, Gao J, Dong X, Bai L, Li J.},
journal = {Microb Cell Fact},
year = {2024},
doi = {10.1186/s12934-024-02492-0},
pmid = {39227830}
}
@article{lin411299,
title = {Microbial dynamics, chemical profile, and bioactive potential of diverse Egyptian marine environments from archaeological wood to soda lake.},
author = {Hegazy GE, Moawad MN, Othman SS, Soliman NA, Abeer E A, Oraby H, Abdel-Fattah YR.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-70411-9},
pmid = {39251732}
}
@article{lin411026,
title = {Histones and histone variant families in prokaryotes.},
author = {Schwab S, Hu Y, van Erp B, Cajili MKM, Hartmann MD, Hernandez Alvarez B, Alva V, Boyle AL, Dame RT.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-52337-y},
pmid = {39261503}
}
@article{lin411099,
title = {Sulfated lactosyl archaeol (SLA) archaeosomes as a vaccine adjuvant.},
author = {Akache B, McCluskie MJ.},
journal = {Hum Vaccin Immunother},
year = {2024},
doi = {10.1080/21645515.2024.2395081},
pmid = {39278862}
}
@article{lin411003,
title = {Ploidy levels in diverse picocyanobacteria from the Baltic Sea.},
author = {Weissenbach J, Aguilera A, Bas Conn L, Pinhassi J, Legrand C, Farnelid H.},
journal = {Environ Microbiol Rep},
year = {2024},
doi = {10.1111/1758-2229.70005},
pmid = {39285802}
}
@article{lin411001,
title = {Deciphering transcript architectural complexity in bacteria and archaea.},
author = {Mattick JSA, Bromley RE, Watson KJ, Adkins RS, Holt CI, Lebov JF, Sparklin BC, Tyson TS, Rasko DA, Dunning Hotopp JC.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.02359-24},
pmid = {39287442}
}
@article{lin411059,
title = {Variation of tRNA modifications with and without intron dependency.},
author = {Hayashi S.},
journal = {Front Genet},
year = {2024},
doi = {10.3389/fgene.2024.1460902},
pmid = {39296543}
}
@article{lin411168,
title = {Characterization and mechanism investigation of salt-activated methionine sulfoxide reductase A from halophiles.},
author = {Zhou S, Pan B, Kuang X, Chen S, Liu L, Song Y, Zhao Y, Xu X, Cheng X, Yang J.},
journal = {iScience},
year = {2024},
doi = {10.1016/j.isci.2024.110806},
pmid = {39297162}
}
@article{lin411137,
title = {The use of thermostable fluorescent proteins for live imaging in Sulfolobus acidocaldarius.},
author = {Recalde A, Abdul-Nabi J, Junker P, van der Does C, Elsasser J, van Wolferen M, Albers SV.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1445186},
pmid = {39314874}
}
@article{lin411041,
title = {Halofilins as emerging bactofilin families of archaeal cell shape plasticity orchestrators.},
author = {Curtis Z, Escudeiro P, Mallon J, Leland O, Rados T, Dodge A, Andre K, Kwak J, Yun K, Isaac B, Martinez Pastor M, Schmid AK, Pohlschroder M, Alva V, Bisson A.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2401583121},
pmid = {39320913}
}
@article{lin411108,
title = {A Haloarchaeal Transcriptional Regulator That Represses the Expression of CRISPR-Associated Genes.},
author = {Turgeman-Grott I, Shalev Y, Shemesh N, Levy R, Eini I, Pasmanik-Chor M, Gophna U.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12091772},
pmid = {39338447}
}
@article{lin411524,
title = {Uncovering the small proteome of Methanosarcina mazei using Ribo-seq and peptidomics under different nitrogen conditions.},
author = {Tufail MA, Jordan B, Hadjeras L, Gelhausen R, Cassidy L, Habenicht T, Gutt M, Hellwig L, Backofen R, Tholey A, Sharma CM, Schmitz RA.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-53008-8},
pmid = {39370430}
}
@article{lin410988,
title = {DUF99 family proteins are novel endonucleases that cleave deoxyuridine on DNA substrates.},
author = {Li J, Xia R, Huang WC, Gu J, Li M.},
journal = {J Biol Chem},
year = {2024},
doi = {10.1016/j.jbc.2024.107901},
pmid = {39426726}
}
@article{lin411002,
title = {HaloClass: Salt-Tolerant Protein Classification with Protein Language Models.},
author = {Narang K, Nath A, Hemstrom W, Chu SKS.},
journal = {Protein J},
year = {2024},
doi = {10.1007/s10930-024-10236-7},
pmid = {39432175}
}
@article{lin411025,
title = {RNase W, a conserved ribonuclease family with a novel active site.},
author = {Vayssieres M, Juttner M, Haas K, Ancelin A, Marchfelder A, Leulliot N, Ferreira-Cerca S, Blaud M.},
journal = {Nucleic Acids Res},
year = {2024},
doi = {10.1093/nar/gkae907},
pmid = {39445822}
}
@article{lin411004,
title = {Sugar alcohol degradation in Archaea: uptake and degradation of mannitol and sorbitol in Haloarcula hispanica.},
author = {Ortjohann M, Schonheit P.},
journal = {Extremophiles},
year = {2024},
doi = {10.1007/s00792-024-01365-z},
pmid = {39466404}
}
@article{lin410956,
title = {Comparative genomics of the highly halophilic Haloferacaceae.},
author = {Griffiths DB, Tiwari RP, Murphy DV, Scott C.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-78438-8},
pmid = {39506039}
}
@article{lin411348,
title = {Role of VapBC4 toxin-antitoxin system of Sulfolobus acidocaldarius in heat stress adaptation.},
author = {Bhowmick A, Recalde A, Bhattacharyya C, Banerjee A, Das J, Rodriguez-Cruz UE, Albers S-V, Ghosh A.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.02753-24},
pmid = {39535218}
}
@article{lin411031,
title = {Archaeal type six secretion system mediates contact-dependent antagonism.},
author = {Zachs T, Malit JJL, Xu J, Schurch A, Sivabalasarma S, Nussbaum P, Albers SV, Pilhofer M.},
journal = {Sci Adv},
year = {2024},
doi = {10.1126/sciadv.adp7088},
pmid = {39546591}
}
@article{lin411030,
title = {Understanding the tolerance of halophilic archaea to stress landscapes.},
author = {Matarredona L, Zafrilla B, Camacho M, Bonete MJ, Esclapez J.},
journal = {Environ Microbiol Rep},
year = {2024},
doi = {10.1111/1758-2229.70039},
pmid = {39568122}
}
@article{lin411223,
title = {The chromatin landscape of the histone-possessing Bacteriovorax bacteria.},
author = {Marinov GK, Doughty B, Kundaje A, Greenleaf WJ.},
journal = {Genome Res},
year = {2025},
doi = {10.1101/gr.279418.124},
pmid = {39572228}
}
@article{lin410960,
title = {MinD2 modulates cell shape and motility in the archaeon Haloferax volcanii.},
author = {Patro M, Grunberger F, Sivabalasarma S, Gfrerer S, Rodriguez-Franco M, Nussbaum P, Grohmann D, Ithurbide S, Albers SV.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1474570},
pmid = {39600568}
}
@article{lin411006,
title = {Purification of micrococcal nuclease for use in ribosomal profiling of high-salinity extremophiles.},
author = {Gregorova P, Isada M, DiRuggiero J, Sarin LP.},
journal = {J Biol Chem},
year = {2025},
doi = {10.1016/j.jbc.2024.108020},
pmid = {39608714}
}
@article{lin410962,
title = {MinD proteins regulate CetZ1 localization in Haloferax volcanii.},
author = {Brown HJ, Duggin IG.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1474697},
pmid = {39651350}
}
@article{lin411212,
title = {Molecular dynamics and machine learning stratify motion-dependent activity profiles of S-layer destabilizing nanobodies.},
author = {Cecil AJ, Sogues A, Gurumurthi M, Lane KS, Remaut H, Pak AJ.},
journal = {PNAS Nexus},
year = {2024},
doi = {10.1093/pnasnexus/pgae538},
pmid = {39660065}
}
@article{lin411126,
title = {How Small Proteins Adjust the Metabolism of Cyanobacteria Under Stress: The Role of Small Proteins in Cyanobacterial Stress Responses.},
author = {Kraus A, Hess WR.},
journal = {Bioessays},
year = {2025},
doi = {10.1002/bies.202400245},
pmid = {39668401}
}
@article{lin411207,
title = {Composition and in situ structure of the Methanospirillum hungatei cell envelope and surface layer.},
author = {Wang H, Zhang J, Liao S, Henstra AM, Leon D, Erde J, Loo JA, Ogorzalek Loo RR, Zhou ZH, Gunsalus RP.},
journal = {Sci Adv},
year = {2024},
doi = {10.1126/sciadv.adr8596},
pmid = {39671499}
}
@article{lin411173,
title = {Carotenoids from Halophilic Archaea: A Novel Approach to Improve Egg Quality and Cecal Microbiota in Laying Hens.},
author = {Dou X, Zhang G, Tang H, Chen X, Chen B, Mei Y, Jiao H, Ren M.},
journal = {Animals (Basel)},
year = {2024},
doi = {10.3390/ani14233470},
pmid = {39682435}
}
@article{lin410938,
title = {Practical laboratory class to assess gene silencing using CRISPR interference (CRISPRi) technology in the archaeon Haloferax volcanii.},
author = {Paggi RA, Ferrari MC, Cerletti M, Gimenez MI, Schwarz TS, Marchfelder A, De Castro RE.},
journal = {Biochem Mol Biol Educ},
year = {2025},
doi = {10.1002/bmb.21872},
pmid = {39699033}
}
@article{lin411094,
title = {Regulation of DNA Topology in Archaea: State of the Art and Perspectives.},
author = {Villain P, Basta T.},
journal = {Mol Microbiol},
year = {2025},
doi = {10.1111/mmi.15328},
pmid = {39709598}
}
@article{lin411360,
title = {PerR functions as a redox-sensing transcription factor regulating metal homeostasis in the thermoacidophilic archaeon Saccharolobus islandicus REY15A.},
author = {Zhang X, Wu P, Bai R, Gan Q, Yang Y, Li H, Ni J, Huang Q, Shen Y.},
journal = {Nucleic Acids Res},
year = {2025},
doi = {10.1093/nar/gkae1263},
pmid = {39727184}
}
@article{lin411390,
title = {Communication between DNA polymerases and Replication Protein A within the archaeal replisome.},
author = {Martinez-Carranza M, Vialle L, Madru C, Cordier F, Tekpinar AD, Haouz A, Legrand P, Le Meur RA, England P, Dulermo R, Guijarro JI, Henneke G, Sauguet L.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-55365-w},
pmid = {39738083}
}
@article{lin411008,
title = {Genetic identification of acetyl-CoA synthetases involved in acetate activation in Haloferax mediterranei.},
author = {Mitra R, Xu Y, Lin L, Guo J, Xu T, Zhou M, Guo F, Li H, Xiang H, Han J.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.01843-24},
pmid = {39745370}
}
@article{lin411160,
title = {Microbial hauberks: composition and function of surface layer proteins in gammaproteobacterial methanotrophs.},
author = {Hamilton R, Gebbie W, Bowman C, Mantanona A, Kalyuzhnaya MG.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.01364-24},
pmid = {39745414}
}
@article{lin411208,
title = {Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity.},
author = {Bourgeois G, Coureux PD, Lazennec-Schurdevin C, Madru C, Gaillard T, Duchateau M, Chamot-Rooke J, Bourcier S, Mechulam Y, Schmitt E.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-024-55718-5},
pmid = {39753558}
}
@article{lin162863,
title = {Genomic re-sequencing reveals mutational divergence across genetically engineered strains of model archaea.},
author = {Soborowski AL, Hackley RK, Hwang S, Zhou G, Dulmage KA, Schonheit P, Daniels C, Bisson-Filho AW, Marchfelder A, Maupin-Furlow JA, Allers T, Schmid AK.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.01084-24},
pmid = {39791890}
}
@article{lin410935,
title = {Functional Role and Mutational Analysis of the Phytoene Synthase from the Halophilic Euryarchaeon Haloferax volcanii in Bacterioruberin Biosynthesis.},
author = {Lin Y, Chen M, Jiang W, Zhang L, Shen L, Bai Y.},
journal = {J Agric Food Chem},
year = {2025},
doi = {10.1021/acs.jafc.4c08894},
pmid = {39825846}
}
@article{lin411227,
title = {Evaluating the efficiency of 16S-ITS-23S operon sequencing for species level resolution in microbial communities.},
author = {Srinivas M, Walsh CJ, Crispie F, O'Sullivan O, Cotter PD, van Sinderen D, Kenny JG.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-024-83410-7},
pmid = {39843557}
}
@article{lin411151,
title = {Identification and characterisation of two functional antibiotic MATE efflux pumps in the archaeon Halorubrum amylolyticum.},
author = {Fakhoury AA, Thompson TP, Rahman KM, Megaw J, McAteer MI, Skvortsov T, Kelly SA, Gilmore BF.},
journal = {NPJ Antimicrob Resist},
year = {2024},
doi = {10.1038/s44259-024-00036-5},
pmid = {39843964}
}
@article{lin411146,
title = {Engineering Saccharomyces cerevisiae for growth on xylose using an oxidative pathway.},
author = {Tanaka K, Yukawa T, Bamba T, Wakiya M, Kumokita R, Jin YS, Kondo A, Hasunuma T.},
journal = {Appl Microbiol Biotechnol},
year = {2025},
doi = {10.1007/s00253-025-13417-1},
pmid = {39873813}
}
@article{lin410963,
title = {DPANN symbiont of Haloferax volcanii accelerates xylan degradation by the non-host haloarchaeon Halorhabdus sp.},
author = {Reva ON, La Cono V, Marturano L, Crisafi F, Smedile F, Mudaliyar M, Ghosal D, Selivanova EA, Ignatenko ME, Ferrer M, Fernandez-Lopez L, Krupovic M, Yakimov MM.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.111749},
pmid = {39925428}
}
@article{lin411069,
title = {Tat-fimbriae ("tafi"): An unusual type of haloarchaeal surface structure depending on the twin-arginine translocation pathway.},
author = {Galeva AV, Zhao D, Syutkin AS, Topilina MY, Shchyogolev SY, Pavlova EY, Selivanova OM, Kireev II, Surin AK, Burygin GL, Liu J, Xiang H, Pyatibratov MG.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.111793},
pmid = {39949959}
}
@article{lin411274,
title = {Halophilic archaea produce wax esters and use an alternative fatty acyl-coenzyme A reductase for precursor synthesis.},
author = {Grossi V, Cuny P, Militon C, Witwinowski J, Eddhif B, Sylvi L, Nowakowski M, Kosta A, Antheaume I, Cornil J, Dubrac S, Kende J, Gribaldo S, Borrel G.},
journal = {ISME J},
year = {2025},
doi = {10.1093/ismejo/wraf035},
pmid = {39993224}
}
@article{lin411005,
title = {Archaeal DNA replication initiation: bridging LUCA's legacy and modern mechanisms.},
author = {Dulermo R.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1561973},
pmid = {40046299}
}
@article{lin410969,
title = {Pharmaceutical applications of halophilic enzymes.},
author = {Yavari-Bafghi M, Amoozegar MA.},
journal = {Heliyon},
year = {2025},
doi = {10.1016/j.heliyon.2025.e42754},
pmid = {40066035}
}
@article{lin411007,
title = {Distinct Patterns of Antibiotic Sensitivities in Ammonia-Oxidising Archaea.},
author = {Klein T, Hodgskiss LH, Dreer M, Murrell JC, Hutchings MI, Schleper C, Lehtovirta-Morley LE.},
journal = {Environ Microbiol},
year = {2025},
doi = {10.1111/1462-2920.70063},
pmid = {40070055}
}
@article{lin411201,
title = {Myxosortase: an intramembrane protease that sorts MYXO-CTERM proteins to the cell surface.},
author = {Guo T, Haft DH, Wall D.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.04067-24},
pmid = {40071993}
}
@article{lin410959,
title = {Internal in-frame translation generates Cas11b, which is important for effective interference in an archaeal CRISPR-Cas system.},
author = {Sailer AL, Brendel J, Chernev A, Konig S, Bischler T, Grafenhan T, Urlaub H, Gophna U, Marchfelder A.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1543464},
pmid = {40078539}
}
@article{lin411447,
title = {Hypersaline organic wastewater treatment: Biotechnological advances and engineering challenges.},
author = {Zhang YQ, Han JL, Cheng HY, Wang HC, Liu TJ, Liang B, Wang AJ.},
journal = {Environ Sci Ecotechnol},
year = {2025},
doi = {10.1016/j.ese.2025.100542},
pmid = {40083747}
}
@article{lin411011,
title = {Asgard Arf GTPases can act as membrane-associating molecular switches with the potential to function in organelle biogenesis.},
author = {Zhu J, Xie R, Ren Q, Zhou J, Chen C, Xie MX, Zhou Y, Zhang Y, Liu N, Wang J, Zhang Z, Liu X, Yan W, Gong Q, Dong L, Zhu J, Wang F, Xie Z.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-57902-7},
pmid = {40097441}
}
@article{lin411423,
title = {Deciphering the folding code of collagens.},
author = {Malcor JD, Ferruz N, Romero-Romero S, Dhingra S, Sagar V, Jalan AA.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-024-54046-y},
pmid = {40108160}
}
@article{lin410995,
title = {Advancing archaeal research through FAIR resource and data sharing, and inclusive community building.},
author = {Ithurbide S, Buan N, Schulze S.},
journal = {Commun Biol},
year = {2025},
doi = {10.1038/s42003-025-07962-8},
pmid = {40157984}
}
@article{lin410981,
title = {Identification of SepF in Streptococcus suis involving cell division.},
author = {Gao T, Li T, Zhu J, Zheng L, Chen M, Liu W, Yang K, Zhang T, Yuan F, Liu Z, Guo R, Li C, Wu Q, Tian Y, Zhou R, Zhou D.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-03919-3},
pmid = {40165076}
}
@article{lin411483,
title = {An unusual glycerol-3-phosphate dehydrogenase in Sulfolobus acidocaldarius elucidates the diversity of glycerol metabolism across Archaea.},
author = {Schmerling C, Schroeder C, Zhou X, Bost J, Wassmer B, Ninck S, Busche T, Montero L, Kaschani F, Schmitz OJ, Kalinowski J, Kaiser M, Albers SV, Brasen C, Siebers B.},
journal = {Commun Biol},
year = {2025},
doi = {10.1038/s42003-025-07953-9},
pmid = {40169898}
}
@article{lin411260,
title = {The salty tango of brine composition and UV photochemistry effects on Halobacterium salinarum cell envelope biosignature preservation.},
author = {Bourmance L, Marie A, Puppo R, Brule S, Schaeffer P, Toupet M, Nitsche R, Elsaesser A, Kish A.},
journal = {Commun Biol},
year = {2025},
doi = {10.1038/s42003-025-08007-w},
pmid = {40216909}
}
@article{lin411012,
title = {Rhomboid proteases: key players at the cell surface within haloarchaea.},
author = {Costa MI, Cerletti M, Paggi RA, Frecha SD, Zoratti V, Latorre LL, De Castro RE, Gimenez MI.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1547649},
pmid = {40226099}
}
@article{lin411253,
title = {Disruption-induced changes in syntrophic propionate and acetate oxidation: flocculation, cell proximity, and microbial activity.},
author = {Weng N, Najafabadi HN, Westerholm M.},
journal = {Biotechnol Biofuels Bioprod},
year = {2025},
doi = {10.1186/s13068-025-02644-3},
pmid = {40253350}
}
@article{lin411306,
title = {Archaeal replicative primase mediates DNA double-strand break repair.},
author = {Xiong D, Li Z, Qi W, Wang S, Huang J, Zhang N, Zhang Z, Huang L.},
journal = {Nucleic Acids Res},
year = {2025},
doi = {10.1093/nar/gkaf322},
pmid = {40272359}
}
@article{lin411217,
title = {Salty secrets of Halobacterium salinarum AD88: a new archaeal ecotype isolated from Cuatro Cienegas Basin.},
author = {Medina-Chavez NO, Rodriguez-Cruz UE, Souza V, De la Torre-Zavala S, Travisano M.},
journal = {BMC Genomics},
year = {2025},
doi = {10.1186/s12864-025-11550-9},
pmid = {40275130}
}
@article{lin411157,
title = {Advanced Strategies for Poly(3-hydroxybutyrate-co-3-hydroxyvalerate) Production: PHA Synthase Homologous Overexpression in the Extremophile Haloferax mediterranei.},
author = {Simica A, Segovia Y, Navarro-Sempere A, Martinez-Espinosa RM, Pire C.},
journal = {Mar Drugs},
year = {2025},
doi = {10.3390/md23040166},
pmid = {40278287}
}
@article{lin410998,
title = {An RNA ligase partner for the prokaryotic protein-only RNase P: insights into the functional diversity of RNase P from genome mining.},
author = {Seshadri R, Gopalan V.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.00449-25},
pmid = {40298408}
}
@article{lin410965,
title = {Molecular adaptations specific to extreme halophilic archaea could promote high perchlorate tolerance.},
author = {Diaz-Rullo J, Gonzalez-Pastor JE.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.00512-25},
pmid = {40340443}
}
@article{lin411310,
title = {A new age in structural S-layer biology: Experimental and in silico milestones.},
author = {Grill-Walcher S, Schaffer C.},
journal = {J Biol Chem},
year = {2025},
doi = {10.1016/j.jbc.2025.110205},
pmid = {40345586}
}
@article{lin410950,
title = {Haloferax volcanii: a versatile model for studying archaeal biology.},
author = {Pohlschroder M, Schulze S, Pfeiffer F, Hong Y.},
journal = {J Bacteriol},
year = {2025},
doi = {10.1128/jb.00062-25},
pmid = {40366157}
}
@article{lin410986,
title = {Exploring protein N-glycosylation in ammonia-oxidizing Nitrososphaerota archaea through glycoproteomic analysis.},
author = {Nakagawa S, Yagi H, Suyama T, Shimamura S, Yanaka S, Yagi-Utsumi M, Kato S, Ohkuma M, Kato K, Takai K.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.03859-24},
pmid = {40387319}
}
@article{lin410964,
title = {Provirus deletion from Haloferax volcanii affects motility, stress resistance, and CRISPR RNA expression.},
author = {Di Cianni N, Bolsinger S, Brendel J, Raabe M, Konig S, Mitchell L, Bischler T, Grafenhan T, Read C, Erdmann S, Allers T, Walther P, Urlaub H, Dyall-Smith M, Pfeiffer F, Marchfelder A.},
journal = {Microlife},
year = {2025},
doi = {10.1093/femsml/uqaf008},
pmid = {40395997}
}
@article{lin410932,
title = {Rapid rewiring of an archaeal transcription factor function via flexible cis-trans interactions.},
author = {Pastor MM, Darnell CL, Vreugdenhil A, Schmid AK.},
journal = {Mol Biol Cell},
year = {2025},
doi = {10.1091/mbc.e24-11-0505},
pmid = {40397565}
}
@article{lin411143,
title = {Unravelling Prokaryotic Codon Usage: Insights from Phylogeny, Influencing Factors and Pathogenicity.},
author = {Dahal U, Bansal A.},
journal = {Curr Genomics},
year = {2025},
doi = {10.2174/0113892029325491240919151045},
pmid = {40433443}
}
@article{lin410936,
title = {Biogenesis, function and evolution of the archaeal S-layer.},
author = {Sivabalasarma S, van Wolferen M, Albers SV, Charles-Orszag A.},
journal = {Curr Opin Cell Biol},
year = {2025},
doi = {10.1016/j.ceb.2025.102534},
pmid = {40441074}
}
@article{lin410933,
title = {Cell division protein CdpA organises and anchors the midcell ring in haloarchaea.},
author = {Liao Y, Shinde VD, Hu D, Xu Z, Soderstrom B, Michie KA, Duggin IG.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-60079-8},
pmid = {40450033}
}
@article{lin411081,
title = {Toxicity Assessment and Bioremediation of Deep Eutectic Solvents by Haloferax mediterranei: A Step toward Sustainable Circular Chemistry.},
author = {Martinez G, Guillena G, Martinez-Espinosa RM.},
journal = {ChemSusChem},
year = {2025},
doi = {10.1002/cssc.202500825},
pmid = {40516035}
}
@article{lin411259,
title = {The Microbial Anti-Inflammatory Molecule (MAM) is a key protein processed and exported to Faecalibacterium duncaniae envelope.},
author = {Vilela Rodrigues T, Marthey S, Auger S, Lima de Jesus L, Henry C, Pechoux C, Arteni A, Martin V, Langella P, de Castro Soares S, Andre G, Azevedo VAC, Chatel JM.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2519695},
pmid = {40530573}
}
@article{lin410954,
title = {Quorum sensing mediates morphology and motility transitions in the model archaeon Haloferax volcanii.},
author = {Chatterjee P, Consoli CE, Schiller H, Winter KK, McCallum ME, Schulze S, Pohlschroder M.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.00906-25},
pmid = {40530876}
}
@article{lin411220,
title = {A self-assembling surface layer flattens the cytokinetic furrow to aid cell division in an archaeon.},
author = {Foo S, Caspy I, Cezanne A, Bharat TAM, Baum B.},
journal = {Proc Natl Acad Sci U S A},
year = {2025},
doi = {10.1073/pnas.2501044122},
pmid = {40531877}
}
@article{lin411258,
title = {A type IV pili-mediated mutualism between two co-resident temperate archaeal viruses and their host.},
author = {Xiang J, Sonani RR, Wang Y, Chen Z, Xiong W, Chen J, Li S, An K, Wang Y, Liu Y, Kreutzberger MAB, Krupovic M, Egelman EH, Du S, Chen X.},
journal = {Cell Rep},
year = {2025},
doi = {10.1016/j.celrep.2025.115873},
pmid = {40544455}
}
@article{lin410939,
title = {Quadruplexes with a grain of salt: influence of cation type and concentration on DNA G4 stability.},
author = {Cucchiarini A, Kledus F, Luo Y, Brazda V, Mergny JL.},
journal = {Eur Biophys J},
year = {2025},
doi = {10.1007/s00249-025-01772-w},
pmid = {40560404}
}
@article{lin410931,
title = {A colorful new reporter system to evaluate gene expression in the archaeon Haloferax volcanii.},
author = {Frecha SD, Gimenez MI, Paggi RA, Castro RE, Cerletti M.},
journal = {Extremophiles},
year = {2025},
doi = {10.1007/s00792-025-01391-5},
pmid = {40576699}
}
@article{lin410937,
title = {Elucidating the Role and Mechanism of Lycopene beta-Cyclase from Haloarcula marismortui through Functional Characterization and Targeted Mutagenesis.},
author = {Zhang L, Chen C, He Y, Cao M, Lin Y, Huang K, Zhang H, Wu C, Chen M, Shen L.},
journal = {J Agric Food Chem},
year = {2025},
doi = {10.1021/acs.jafc.5c02985},
pmid = {40583639}
}
@article{lin411324,
title = {Transcriptional landscape of the cell cycle in a model thermoacidophilic archaeon reveals similarities to eukaryotes.},
author = {Gomez-Raya-Vilanova MV, Teuliere J, Medvedeva S, Dai Y, Corel E, Lopez P, Lapointe FJ, Bhattacharya D, Haraoui LP, Turc E, Monot M, Cvirkaite-Krupovic V, Bapteste E, Krupovic M.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-60613-8},
pmid = {40593522}
}
@article{lin410944,
title = {Revisiting synthetic lethality of Gcn5-related N-acetyltransferase (GNAT) family mutations in Haloferax volcanii.},
author = {Weber KR, Novillo B, Maupin-Furlow JA.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.01229-25},
pmid = {40600719}
}
@article{lin410961,
title = {Biochemical properties of glycerol kinase from the hypersaline-adapted archaeon Haloferax volcanii.},
author = {Sanchez KM, Maupin-Furlow JA.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.00886-25},
pmid = {40626661}
}
@article{lin411068,
title = {A narrow range of transcript-error rates across the Tree of Life.},
author = {Li W, Baehr S, Marasco M, Reyes L, Brister D, Pikaard CS, Gout JF, Vermulst M, Lynch M.},
journal = {Sci Adv},
year = {2025},
doi = {10.1126/sciadv.adv9898},
pmid = {40644547}
}
@article{lin411248,
title = {A transfer RNA methyltransferase with an unusual domain composition catalyzes 2'-O-methylation at position 6 in tRNA.},
author = {Matsuda T, Yamagami R, Ihara A, Suzuki T, Hirata A, Hori H.},
journal = {Nucleic Acids Res},
year = {2025},
doi = {10.1093/nar/gkaf579},
pmid = {40650981}
}
@article{lin411336,
title = {Coupling chromosome organization to genome segregation in Archaea.},
author = {Kabli AF, Ng IW, Read N, Pal P, Reimann J, Tran NT, Albers SV, Le TBK, Barilla D.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-61997-3},
pmid = {40695815}
}
@article{lin410951,
title = {CRISPR-Cas induced self-targeting identifies key players in archaeal microhomology-mediated end joining.},
author = {Sailer AL, Wortz J, Smith V, Stachler AE, Blau F, Daratha M, Maier LK, Allers T, Marchfelder A.},
journal = {Microlife},
year = {2025},
doi = {10.1093/femsml/uqaf015},
pmid = {40698183}
}
@article{lin411133,
title = {CRISPR-based genetic tools for the study of host-microbe interactions.},
author = {Echavarria Galindo M, Lai Y.},
journal = {Infect Immun},
year = {2025},
doi = {10.1128/iai.00510-24},
pmid = {40757822}
}
@article{lin411113,
title = {The stress of carrying CRISPR-Cas.},
author = {Haider D, Bauer R, Grempels A, Roscher R, Aslan CC, Mauerer S, Spellerberg B.},
journal = {Virulence},
year = {2025},
doi = {10.1080/21505594.2025.2541701},
pmid = {40760018}
}
@article{lin411301,
title = {Distinct filament morphology and membrane tethering features of the dual FtsZ paralogs in Odinarchaeota.},
author = {Kumari J, Uthaman A, Bose S, Kundu A, Sharma V, Dutta S, Dhar A, Roy S, Srinivasan R, Pande S, Vinothkumar KR, Gayathri P, Palani S.},
journal = {EMBO J},
year = {2025},
doi = {10.1038/s44318-025-00529-7},
pmid = {40781499}
}
@article{lin411278,
title = {Unusual cell surfaces, pili, and archaella of Thermoplasmatales archaea.},
author = {Gaines MC, Isupov MN, McLaren M, Haque RU, Recalde A, Bargiela R, Gold VAM, Albers SV, Golyshin PN, Golyshina OV, Daum B.},
journal = {ISME J},
year = {2025},
doi = {10.1093/ismejo/wraf176},
pmid = {40801261}
}
@article{lin411323,
title = {Detection and Quantitation of Small Proteins Using Mass Spectrometry.},
author = {Franco PHC, Zeinert R, Meier-Credo J, Storz G, Langer JD.},
journal = {Mol Cell Proteomics},
year = {2025},
doi = {10.1016/j.mcpro.2025.101052},
pmid = {40818532}
}
@article{lin410934,
title = {Complete genome sequence of the halophilic archaeon Haloferax volcanii PC0224, isolated from a solar saltern in Thailand.},
author = {Phatcharaharikarn M, Ruangsuj P, Songngamsuk T, Santaweesuk P, Tangwattanachuleeporn M, Srisucharitpanit K, Wongchitrat P, Yasawong M.},
journal = {BMC Genom Data},
year = {2025},
doi = {10.1186/s12863-025-01353-y},
pmid = {40826320}
}
@article{lin411109,
title = {Unexplored diversity and potential functions of extra-chromosomal elements.},
author = {Liu H, Sun J, Si J, Liao Y, Bai J, Li X, Wang L, Cai K, Ni W, Zhou P, Hu S.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00175-25},
pmid = {40827884}
}
@article{lin411060,
title = {Thermostable Enzyme Variants in the Lower Mevalonate Pathway Improve Isoprenoid Production by Cell-Free Biocatalysis.},
author = {Sarnik SA, Martinsen MR, Korman TP, Schwartz DK, Kaar JL, Bomble YJ.},
journal = {ACS Sustain Chem Eng},
year = {2025},
doi = {10.1021/acssuschemeng.5c03763},
pmid = {40842514}
}
@article{lin410946,
title = {Investigation of the global translational response to oxidative stress in the model archaeon Haloferax volcanii reveals untranslated small RNAs with ribosome occupancy.},
author = {Dallon E, Moran HM, Chidambaran SR, Kian A, Huang BYH, Fried SD, DiRuggiero J.},
journal = {mSphere},
year = {2025},
doi = {10.1128/msphere.00343-25},
pmid = {40920071}
}
@article{lin411102,
title = {Structure of a functional archaellum in Bacteria of the Chloroflexota phylum.},
author = {Sivabalasarma S, Taib N, Mollat CL, Joest M, Steimle S, Gribaldo S, Albers SV.},
journal = {Nat Microbiol},
year = {2025},
doi = {10.1038/s41564-025-02110-8},
pmid = {40962902}
}
@article{lin411075,
title = {tDR-quant: a reliable electroporation-based approach for quantifying tRNA-derived fragments binding to ribosomes.},
author = {Bakowska-Zywicka K, Tyczewska A.},
journal = {FEMS Yeast Res},
year = {2025},
doi = {10.1093/femsyr/foaf051},
pmid = {40972007}
}
@article{lin410999,
title = {Wide Diversity and Complex Evolution of M42 Aminopeptidases With Contrasted Functional Properties in Archaea.},
author = {Chagny E, Taib N, Fenel D, Girard E, Gribaldo S, Flament D, Franzetti B.},
journal = {Mol Biol Evol},
year = {2025},
doi = {10.1093/molbev/msaf233},
pmid = {40977497}
}
@article{lin411117,
title = {The infection cycle of the haloarchaeal virus HFTV1 is tightly regulated and strongly inhibits motility of its host.},
author = {Schwarzer S, Backer LE, Nijland JG, Hayani Aji I, de Jong A, Moraru C, Steglich C, Quax TEF.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00704-25},
pmid = {40981431}
}
@article{lin410985,
title = {Uncovering the prevalence, key biogenesis enzymes, and biological significance of archaeal lipoproteins.},
author = {Hong Y, Makarova KS, Garcia AA, Xu R, Pfeiffer F, Welander PV, Pohlschroder M.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-63625-6},
pmid = {40998839}
}
@article{lin411221,
title = {Cryo-EM resolves the structure of the archaeal dsDNA virus HFTV1 from head to tail.},
author = {Zhang DX, Isupov MN, Davies RM, Schwarzer S, McLaren M, Stuart WS, Gold VAM, Oksanen HM, Quax TEF, Daum B.},
journal = {Sci Adv},
year = {2025},
doi = {10.1126/sciadv.adx1178},
pmid = {41042861}
}
@article{lin410958,
title = {iPro-MP: a BERT-based model to predict multiple prokaryotic promoters.},
author = {Su W, Yang Y, Zhao Y, Yuan S, Xie X, Hao Y, Zhang H, Ye D, Lyu H, Lin H.},
journal = {Genome Biol},
year = {2025},
doi = {10.1186/s13059-025-03819-9},
pmid = {41083998}
}
@article{lin411162,
title = {Protein modification by a eukaryotic-like ubiquitin-related modifier in the hyperthermophilic archaeon Saccharolobus islandicus.},
author = {Cao J, Xiong D, Zheng X, Yuan W, Huang L.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00580-25},
pmid = {41114577}
}
@article{lin410949,
title = {Characterization of archaeal promoters using explainable and web-based CNN model.},
author = {Shujaat M, Mao SQ.},
journal = {BMC Genomics},
year = {2025},
doi = {10.1186/s12864-025-12121-8},
pmid = {41120858}
}
@article{lin410953,
title = {GNAT family Pat2 is required for long-term survival on glycerol and catalyzes lysine acetylation of glycerol kinase in hypersaline-adapted archaea.},
author = {Judd HN, Sanchez KM, Dublino LS, Zhang GJ, Yu D, Gal D, Couto-Rodriguez RL, Wang X, Maupin-Furlow JA.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.02514-25},
pmid = {41143516}
}
@article{lin411061,
title = {Thermal-bias PCR: generation of amplicon libraries without degenerate primer interference.},
author = {Moore SD.},
journal = {PeerJ},
year = {2025},
doi = {10.7717/peerj.20241},
pmid = {41159003}
}
@article{lin410943,
title = {Evolutionary insights into provirus-encoded CRISPR-Cas systems in halophilic archaea.},
author = {Naki D, Gophna U.},
journal = {Microlife},
year = {2025},
doi = {10.1093/femsml/uqaf033},
pmid = {41216030}
}
@article{lin411101,
title = {Identification of the D-glucuronyl C5-epimerase that introduces iduronic acid into N-linked glycans decorating archaeal glycoproteins.},
author = {Vershinin Z, Zaretsky M, Notaro A, Yu D, Molinaro A, Sofer S, Grossman-Haham I, De Castro C, Eichler J.},
journal = {Commun Biol},
year = {2025},
doi = {10.1038/s42003-025-08987-9},
pmid = {41249562}
}
@article{lin410945,
title = {Genome-wide ribonucleotide detection in Archaea.},
author = {Moalic Y, Reveil M, Kundnani DL, Balachander S, Yang T, Gombolay A, Ranjbarian F, Brizard R, Durand P, Myllykallio H, Jebbar M, Hofer A, Storici F, Henneke G.},
journal = {Nucleic Acids Res},
year = {2025},
doi = {10.1093/nar/gkaf1231},
pmid = {41273176}
}
@article{lin410930,
title = {Dynamic acetylation of a conserved lysine impacts glycerol kinase activity and abundance in the haloarchaeon Haloferax volcanii.},
author = {Sanchez KM, Addagarla M, Judd H, Wang X, Maupin-Furlow J.},
journal = {J Biol Chem},
year = {2025},
doi = {10.1016/j.jbc.2025.110960},
pmid = {41274502}
}
@article{lin411015,
title = {Ultrastructure of Serratia liquefaciens Grown at 7 mbar Under Simulated Martian Conditions.},
author = {Schuerger AC, Kelley KL.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13112466},
pmid = {41304153}
}
@article{lin411123,
title = {The Human Archaeome: Commensals, Opportunists, or Emerging Pathogens?},
author = {Ruden DM.},
journal = {Pathogens},
year = {2025},
doi = {10.3390/pathogens14111111},
pmid = {41305349}
}
@article{lin411103,
title = {Life in the brine of Lunenburg, Germany: unveiling microorganisms associated with Zechstein salt deposits.},
author = {Runzheimer K, Schwab L, Engel D, Schaudinn C, Laue M, Rebrosova K, Beblo-Vranesevic K, Azizah M, Leuko S.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1625916},
pmid = {41311500}
}
@article{lin411122,
title = {Functional diversity and molecular interactions of small membrane proteins in bacteria.},
author = {Yuan J, Koch HG, Berghoff BA.},
journal = {Microlife},
year = {2025},
doi = {10.1093/femsml/uqaf035},
pmid = {41312160}
}