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title = {The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations.},
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title = {Selenium-containing xanthine dehydrogenase from Eubacterium barkeri.},
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@article{lin153685,
title = {Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes.},
author = {Schwiertz A, Le Blay G, Blaut M.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.1.375-382.2000},
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@article{lin153722,
title = {Selenium-dependent metabolism of purines: A selenium-dependent purine hydroxylase and xanthine dehydrogenase were purified from Clostridium purinolyticum and characterized.},
author = {Self WT, Stadtman TC.},
journal = {Proc Natl Acad Sci U S A},
year = {2000},
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@article{lin153708,
title = {Anaerovorax odorimutans gen. nov., sp. nov., a putrescine-fermenting, strictly anaerobic bacterium.},
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journal = {Int J Syst Evol Microbiol},
year = {2000},
doi = {10.1099/00207713-50-4-1591},
pmid = {10939665}
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@article{lin153727,
title = {Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose.},
author = {Fernandez AS, Hashsham SA, Dollhopf SL, Raskin L, Glagoleva O, Dazzo FB, Hickey RF, Criddle CS, Tiedje JM.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.9.4058-4067.2000},
pmid = {10966429}
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@article{lin153726,
title = {Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvage.},
author = {Xi H, Schneider BL, Reitzer L.},
journal = {J Bacteriol},
year = {2000},
doi = {10.1128/jb.182.19.5332-5341.2000},
pmid = {10986234}
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@article{lin153701,
title = {Rotation of the exo-methylene group of (R)-3-methylitaconate catalyzed by coenzyme B(12)-dependent 2-methyleneglutarate mutase from Eubacterium barkeri.},
author = {Pierik AJ, Ciceri D, Broker G, Edwards CH, McFarlane W, Winter J, Buckel W, Golding BT.},
journal = {J Am Chem Soc},
year = {2002},
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@article{lin153684,
title = {Restricted distribution of the butyrate kinase pathway among butyrate-producing bacteria from the human colon.},
author = {Louis P, Duncan SH, McCrae SI, Millar J, Jackson MS, Flint HJ.},
journal = {J Bacteriol},
year = {2004},
doi = {10.1128/jb.186.7.2099-2106.2004},
pmid = {15028695}
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@article{lin153698,
title = {Searching for intermediates in the carbon skeleton rearrangement of 2-methyleneglutarate to (R)-3-methylitaconate catalyzed by coenzyme B12-dependent 2-methyleneglutarate mutase from Eubacterium barkeri.},
author = {Pierik AJ, Ciceri D, Lopez RF, Kroll F, Broker G, Beatrix B, Buckel W, Golding BT.},
journal = {Biochemistry},
year = {2005},
doi = {10.1021/bi050049n},
pmid = {16060663}
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@article{lin153710,
title = {Eubacterium aggreganssp. nov., a new homoacetogenic bacterium from olive mill wastewater treatment digestor.},
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journal = {Anaerobe},
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@article{lin153714,
title = {Molecular and functional analysis of nicotinate catabolism in Eubacterium barkeri.},
author = {Alhapel A, Darley DJ, Wagener N, Eckel E, Elsner N, Pierik AJ.},
journal = {Proc Natl Acad Sci U S A},
year = {2006},
doi = {10.1073/pnas.0601635103},
pmid = {16894175}
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@article{lin153725,
title = {The three-dimensional crystal structure of the PrpF protein of Shewanella oneidensis complexed with trans-aconitate: insights into its biological function.},
author = {Garvey GS, Rocco CJ, Escalante-Semerena JC, Rayment I.},
journal = {Protein Sci},
year = {2007},
doi = {10.1110/ps.072801907},
pmid = {17567742}
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@article{lin153720,
title = {Orphan SelD proteins and selenium-dependent molybdenum hydroxylases.},
author = {Haft DH, Self WT.},
journal = {Biol Direct},
year = {2008},
doi = {10.1186/1745-6150-3-4},
pmid = {18289380}
}
@article{lin153696,
title = {Structural and kinetic properties of a beta-hydroxyacid dehydrogenase involved in nicotinate fermentation.},
author = {Reitz S, Alhapel A, Essen LO, Pierik AJ.},
journal = {J Mol Biol},
year = {2008},
doi = {10.1016/j.jmb.2008.07.050},
pmid = {18680749}
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@article{lin153723,
title = {Molecular characterization of a Clostridium difficile bacteriophage and its cloned biologically active endolysin.},
author = {Mayer MJ, Narbad A, Gasson MJ.},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/jb.00686-08},
pmid = {18708505}
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@article{lin153697,
title = {The crystal structure of enamidase: a bifunctional enzyme of the nicotinate catabolism.},
author = {Kress D, Alhapel A, Pierik AJ, Essen LO.},
journal = {J Mol Biol},
year = {2008},
doi = {10.1016/j.jmb.2008.09.002},
pmid = {18805424}
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@article{lin153695,
title = {Cloning, heterologous expression, and functional characterization of the nicotinate dehydrogenase gene from Pseudomonas putida KT2440.},
author = {Yang Y, Yuan S, Chen T, Ma P, Shang G, Dai Y.},
journal = {Biodegradation},
year = {2009},
doi = {10.1007/s10532-008-9243-x},
pmid = {19118407}
}
@article{lin153728,
title = {Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization.},
author = {Zhang Y, Rodionov DA, Gelfand MS, Gladyshev VN.},
journal = {BMC Genomics},
year = {2009},
doi = {10.1186/1471-2164-10-78},
pmid = {19208259}
}
@article{lin153711,
title = {The Mo-Se active site of nicotinate dehydrogenase.},
author = {Wagener N, Pierik AJ, Ibdah A, Hille R, Dobbek H.},
journal = {Proc Natl Acad Sci U S A},
year = {2009},
doi = {10.1073/pnas.0902210106},
pmid = {19549881}
}
@article{lin153692,
title = {Crystal structure and putative mechanism of 3-methylitaconate-delta-isomerase from Eubacterium barkeri.},
author = {Velarde M, Macieira S, Hilberg M, Broker G, Tu SM, Golding BT, Pierik AJ, Buckel W, Messerschmidt A.},
journal = {J Mol Biol},
year = {2009},
doi = {10.1016/j.jmb.2009.06.052},
pmid = {19559030}
}
@article{lin153715,
title = {A preliminary crystallographic study of recombinant NicX, an Fe(2+)-dependent 2,5-dihydroxypyridine dioxygenase from Pseudomonas putida KT2440.},
author = {Jimenez JI, Acebron I, Garcia JL, Diaz E, Mancheno JM.},
journal = {Acta Crystallogr Sect F Struct Biol Cryst Commun},
year = {2010},
doi = {10.1107/s174430911001119x},
pmid = {20445257}
}
@article{lin153724,
title = {Characterization of the protocatechuate 4,5-cleavage pathway operon in Comamonas sp. strain E6 and discovery of a novel pathway gene.},
author = {Kamimura N, Aoyama T, Yoshida R, Takahashi K, Kasai D, Abe T, Mase K, Katayama Y, Fukuda M, Masai E.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.01863-10},
pmid = {20952641}
}
@article{lin153716,
title = {A selenium-dependent xanthine dehydrogenase triggers biofilm proliferation in Enterococcus faecalis through oxidant production.},
author = {Srivastava M, Mallard C, Barke T, Hancock LE, Self WT.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.01063-10},
pmid = {21257770}
}
@article{lin153721,
title = {Biochemical and structural studies of uncharacterized protein PA0743 from Pseudomonas aeruginosa revealed NAD+-dependent L-serine dehydrogenase.},
author = {Tchigvintsev A, Singer A, Brown G, Flick R, Evdokimova E, Tan K, Gonzalez CF, Savchenko A, Yakunin AF.},
journal = {J Biol Chem},
year = {2012},
doi = {10.1074/jbc.m111.294561},
pmid = {22128181}
}
@article{lin153705,
title = {Cloning of a novel 6-chloronicotinic acid chlorohydrolase from the newly isolated 6-chloronicotinic acid mineralizing Bradyrhizobiaceae strain SG-6C.},
author = {Shettigar M, Pearce S, Pandey R, Khan F, Dorrian SJ, Balotra S, Russell RJ, Oakeshott JG, Pandey G.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0051162},
pmid = {23226482}
}
@article{lin153706,
title = {The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline.},
author = {Lluch J, Servant F, Paisse S, Valle C, Valiere S, Kuchly C, Vilchez G, Donnadieu C, Courtney M, Burcelin R, Amar J, Bouchez O, Lelouvier B.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0142334},
pmid = {26544955}
}
@article{lin153717,
title = {Ustilago maydis produces itaconic acid via the unusual intermediate trans-aconitate.},
author = {Geiser E, Przybilla SK, Friedrich A, Buckel W, Wierckx N, Blank LM, Bolker M.},
journal = {Microb Biotechnol},
year = {2016},
doi = {10.1111/1751-7915.12329},
pmid = {26639528}
}
@article{lin153712,
title = {The complete genome sequence of Eubacterium limosum SA11, a metabolically versatile rumen acetogen.},
author = {Kelly WJ, Henderson G, Pacheco DM, Li D, Reilly K, Naylor GE, Janssen PH, Attwood GT, Altermann E, Leahy SC.},
journal = {Stand Genomic Sci},
year = {2016},
doi = {10.1186/s40793-016-0147-9},
pmid = {26981167}
}
@article{lin153683,
title = {Characterization and Genome Analysis of a Nicotine and Nicotinic Acid-Degrading Strain Pseudomonas putida JQ581 Isolated from Marine.},
author = {Li A, Qiu J, Chen D, Ye J, Wang Y, Tong L, Jiang J, Chen J.},
journal = {Mar Drugs},
year = {2017},
doi = {10.3390/md15060156},
pmid = {28561771}
}
@article{lin153718,
title = {Periplasmic Nicotine Dehydrogenase NdhAB Utilizes Pseudoazurin as Its Physiological Electron Acceptor in Agrobacterium tumefaciens S33.},
author = {Yu W, Wang R, Huang H, Xie H, Wang S.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.01050-17},
pmid = {28625985}
}
@article{lin153719,
title = {A eukaryotic nicotinate-inducible gene cluster: convergent evolution in fungi and bacteria.},
author = {Amon J, Fernandez-Martin R, Bokor E, Cultrone A, Kelly JM, Flipphi M, Scazzocchio C, Hamari Z.},
journal = {Open Biol},
year = {2017},
doi = {10.1098/rsob.170199},
pmid = {29212709}
}
@article{lin153688,
title = {Functional Annotation of LigU as a 1,3-Allylic Isomerase during the Degradation of Lignin in the Protocatechuate 4,5-Cleavage Pathway from the Soil Bacterium Sphingobium sp. SYK-6.},
author = {Hogancamp TN, Raushel FM.},
journal = {Biochemistry},
year = {2018},
doi = {10.1021/acs.biochem.8b00295},
pmid = {29658701}
}
@article{lin13636,
title = {Eubacterium maltosivorans sp. nov., a novel human intestinal acetogenic and butyrogenic bacterium with a versatile metabolism.},
author = {Feng Y, Stams AJM, Sanchez-Andrea I, de Vos WM},
journal = {Int J Syst Evol Microbiol},
year = {2018},
doi = {10.1099/ijsem.0.003028},
pmid = {30285910}
}
@article{lin153707,
title = {Transcriptome analysis of genes and metabolic pathways associated with nicotine degradation in Aspergillus oryzae 112822.},
author = {He C, Huang Y, Liu P, Wei J, Yang Y, Xu L, Xiao M.},
journal = {BMC Genomics},
year = {2019},
doi = {10.1186/s12864-019-5446-2},
pmid = {30678639}
}
@article{lin153699,
title = {Biochemical and Genetic Analysis of 4-Hydroxypyridine Catabolism in Arthrobacter sp. Strain IN13.},
author = {Vaitekunas J, Gasparaviciute R, Stankeviciute J, Urbelis G, Meskys R.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8060888},
pmid = {32545463}
}
@article{lin153700,
title = {Unravelling lactate-acetate and sugar conversion into butyrate by intestinal Anaerobutyricum and Anaerostipes species by comparative proteogenomics.},
author = {Shetty SA, Boeren S, Bui TPN, Smidt H, de Vos WM.},
journal = {Environ Microbiol},
year = {2020},
doi = {10.1111/1462-2920.15269},
pmid = {33001550}
}
@article{lin153690,
title = {Structural, Mechanistic, and Functional Insights into an Arthrobacter nicotinovorans Molybdenum Hydroxylase Involved in Nicotine Degradation.},
author = {Wang L, Mu X, Li W, Xu Q, Xu P, Zhang L, Zhang Y, Wu G.},
journal = {Molecules},
year = {2021},
doi = {10.3390/molecules26144387},
pmid = {34299660}
}
@article{lin153709,
title = {Genome organization and evolution of a eukaryotic nicotinate co-inducible pathway.},
author = {Bokor E, Flipphi M, Kocsube S, Amon J, Vagvolgyi C, Scazzocchio C, Hamari Z.},
journal = {Open Biol},
year = {2021},
doi = {10.1098/rsob.210099},
pmid = {34582709}
}
@article{lin153694,
title = {Lactobacillus paracasei CCFM1229 and Lactobacillus rhamnosus CCFM1228 Alleviated Depression- and Anxiety-Related Symptoms of Chronic Stress-Induced Depression in Mice by Regulating Xanthine Oxidase Activity in the Brain.},
author = {Xu M, Tian P, Zhu H, Zou R, Zhao J, Zhang H, Wang G, Chen W.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14061294},
pmid = {35334950}
}
@article{lin153702,
title = {A complete nicotinate degradation pathway in the microbial eukaryote Aspergillus nidulans.},
author = {Bokor E, Amon J, Varga M, Szekeres A, Hegedus Z, Jakusch T, Szakonyi Z, Flipphi M, Vagvolgyi C, Gacser A, Scazzocchio C, Hamari Z.},
journal = {Commun Biol},
year = {2022},
doi = {10.1038/s42003-022-03684-3},
pmid = {35864155}
}
@article{lin153693,
title = {Gut Microbiota Eubacterium callanderi Exerts Anti-Colorectal Cancer Activity.},
author = {Ryu SW, Kim JS, Oh BS, Choi WJ, Yu SY, Bak JE, Park SH, Kang SW, Lee J, Jung WY, Lee JS, Lee JH.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02531-22},
pmid = {36448791}
}
@article{lin153703,
title = {Impact of the Dimethyl Sulfoxide Reductase Superfamily on the Evolution of Biogeochemical Cycles.},
author = {Wells M, Kim M, Akob DM, Basu P, Stolz JF.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.04145-22},
pmid = {36951557}
}
@article{lin153686,
title = {FBS-based cryoprotective compositions for effective cryopreservation of gut microbiota and key intestinal microorganisms.},
author = {Zalomova LV, Fesenko EE.},
journal = {BMC Res Notes},
year = {2024},
doi = {10.1186/s13104-024-06836-2},
pmid = {38898515}
}
@article{lin153691,
title = {Clostridioides difficile exploits xanthine and uric acid as nutrients by utilizing a selenium-dependent catabolic pathway.},
author = {Johnstone MA, Self WT.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.00844-24},
pmid = {39166854}
}
@article{lin153689,
title = {Identification and Characterization of Two Novel Members of the Family Eubacteriaceae, Anaerofustis butyriciformans sp. nov. and Pseudoramibacter faecis sp. nov., Isolated from Human Feces.},
author = {Wang XM, Huang HJ, Sun XW, Wei RQ, Chen HY, Liu C, Liu SJ.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13040916},
pmid = {40284751}
}
@article{lin153687,
title = {Effect of rainfall on metagenomics in a sewage environment in Hongta District, Yuxi city, Yunnan Province.},
author = {Jia S, Gu W, Jiang L, Zhang Y, Fu X, Yin J, Zhou Y.},
journal = {PeerJ},
year = {2025},
doi = {10.7717/peerj.20199},
pmid = {41282988}
}