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title = {Genetic changes to optimize carbon partitioning between ethanol and biosynthesis in ethanologenic Escherichia coli.},
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title = {Production of optically pure D-lactic acid in mineral salts medium by metabolically engineered Escherichia coli W3110.},
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title = {Engineering the metabolism of Escherichia coli W3110 for the conversion of sugar to redox-neutral and oxidized products: homoacetate production.},
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title = {Engineering Escherichia coli for efficient conversion of glucose to pyruvate.},
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title = {The Escherichia coli GTPase CgtAE cofractionates with the 50S ribosomal subunit and interacts with SpoT, a ppGpp synthetase/hydrolase.},
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@article{lin133872,
title = {Pyruvate formate lyase and acetate kinase are essential for anaerobic growth of Escherichia coli on xylose.},
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title = {Effect of culture conditions on microorganism identification by matrix-assisted laser desorption ionization mass spectrometry.},
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title = {Enhanced trehalose production improves growth of Escherichia coli under osmotic stress.},
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title = {Enhanced hydrogen production from formic acid by formate hydrogen lyase-overexpressing Escherichia coli strains.},
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@article{lin133890,
title = {Gene-specific effects of antisense phosphorodiamidate morpholino oligomer-peptide conjugates on Escherichia coli and Salmonella enterica serovar typhimurium in pure culture and in tissue culture.},
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title = {Construction of an Escherichia coli K-12 mutant for homoethanologenic fermentation of glucose or xylose without foreign genes.},
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journal = {Appl Environ Microbiol},
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title = {Fermentative utilization of glycerol by Escherichia coli and its implications for the production of fuels and chemicals.},
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title = {Global transcription and metabolic flux analysis of Escherichia coli in glucose-limited fed-batch cultivations.},
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title = {Sample processing for DNA chip array-based analysis of enterohemorrhagic Escherichia coli (EHEC).},
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title = {Metabolic flux control at the pyruvate node in an anaerobic Escherichia coli strain with an active pyruvate dehydrogenase.},
author = {Wang Q, Ou MS, Kim Y, Ingram LO, Shanmugam KT.},
journal = {Appl Environ Microbiol},
year = {2010},
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title = {Anaerobic obligatory xylitol production in Escherichia coli strains devoid of native fermentation pathways.},
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journal = {Appl Environ Microbiol},
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title = {Additive effects of orexin B and vasoactive intestinal polypeptide on LL-37-mediated antimicrobial activities.},
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title = {Novel bacterial NAD+-dependent DNA ligase inhibitors with broad-spectrum activity and antibacterial efficacy in vivo.},
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title = {Photocatalytic disinfection using titanium dioxide: spectrum and mechanism of antimicrobial activity.},
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title = {In vitro validation of acetyltransferase activity of GlmU as an antibacterial target in Haemophilus influenzae.},
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title = {The antimicrobial activity of the appetite peptide hormone ghrelin.},
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journal = {Peptides},
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title = {Novel rapidly diversifiable antimicrobial RNA polymerase switch region inhibitors with confirmed mode of action in Haemophilus influenzae.},
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title = {Comparison of Escherichia coli and anaerobic consortia derived from compost as anodic biocatalysts in a glycerol-oxidizing microbial fuel cell.},
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journal = {Bioresour Technol},
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title = {Engineering Escherichia coli to increase plasmid DNA production in high cell-density cultivations in batch mode.},
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journal = {Microb Cell Fact},
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title = {Display of multimeric antimicrobial peptides on the Escherichia coli cell surface and its application as whole-cell antibiotics.},
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title = {Evaluation of a lipopeptide biosurfactant from Bacillus natto TK-1 as a potential source of anti-adhesive, antimicrobial and antitumor activities.},
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title = {The transcriptional repressor BLIMP1 curbs host defenses by suppressing expression of the chemokine CCL8.},
author = {Severa M, Islam SA, Waggoner SN, Jiang Z, Kim ND, Ryan G, Kurt-Jones E, Charo I, Caffrey DR, Boyartchuk VL, Luster AD, Fitzgerald KA.},
journal = {J Immunol},
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title = {A long-term cultivation of an anaerobic methane-oxidizing microbial community from deep-sea methane-seep sediment using a continuous-flow bioreactor.},
author = {Aoki M, Ehara M, Saito Y, Yoshioka H, Miyazaki M, Saito Y, Miyashita A, Kawakami S, Yamaguchi T, Ohashi A, Nunoura T, Takai K, Imachi H.},
journal = {PLoS One},
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title = {Delineating the importance of serum opsonins and the bacterial capsule in affecting the uptake and killing of Burkholderia pseudomallei by murine neutrophils and macrophages.},
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title = {A novel high-throughput cell-based assay aimed at identifying inhibitors of DNA metabolism in bacteria.},
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journal = {Antimicrob Agents Chemother},
year = {2014},
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@article{lin133869,
title = {Reduced graphene oxide anodes for potential application in algae biophotovoltaic platforms.},
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journal = {Sci Rep},
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@article{lin133870,
title = {Production of cinnamic and p-hydroxycinnamic acid from sugar mixtures with engineered Escherichia coli.},
author = {Vargas-Tah A, Martinez LM, Hernandez-Chavez G, Rocha M, Martinez A, Bolivar F, Gosset G.},
journal = {Microb Cell Fact},
year = {2015},
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@article{lin133867,
title = {Optimization of a nanotechnology based antimicrobial platform for food safety applications using Engineered Water Nanostructures (EWNS).},
author = {Pyrgiotakis G, Vedantam P, Cirenza C, McDevitt J, Eleftheriadou M, Leonard SS, Demokritou P.},
journal = {Sci Rep},
year = {2016},
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@article{lin133865,
title = {Bacterial Cysteine-Inducible Cysteine Resistance Systems.},
author = {Takumi K, Nonaka G.},
journal = {J Bacteriol},
year = {2016},
doi = {10.1128/jb.01039-15},
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title = {Detecting cell lysis using viscosity monitoring in E. coli fermentation to prevent product loss.},
author = {Newton JM, Schofield D, Vlahopoulou J, Zhou Y.},
journal = {Biotechnol Prog},
year = {2016},
doi = {10.1002/btpr.2292},
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@article{lin133853,
title = {Extracellular expression of glutamate decarboxylase B in Escherichia coli to improve gamma-aminobutyric acid production.},
author = {Zhao A, Hu X, Li Y, Chen C, Wang X.},
journal = {AMB Express},
year = {2016},
doi = {10.1186/s13568-016-0231-y},
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@article{lin133855,
title = {Engineering of a microbial coculture of Escherichia coli strains for the biosynthesis of resveratrol.},
author = {Camacho-Zaragoza JM, Hernandez-Chavez G, Moreno-Avitia F, Ramirez-Iniguez R, Martinez A, Bolivar F, Gosset G.},
journal = {Microb Cell Fact},
year = {2016},
doi = {10.1186/s12934-016-0562-z},
pmid = {27680538}
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@article{lin133851,
title = {Synthetic redesign of Escherichia coli for cadaverine production from galactose.},
author = {Kwak DH, Lim HG, Yang J, Seo SW, Jung GY.},
journal = {Biotechnol Biofuels},
year = {2017},
doi = {10.1186/s13068-017-0707-2},
pmid = {28127401}
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@article{lin133908,
title = {Antimicrobial Polymers in the Nano-World.},
author = {Alvarez-Paino M, Munoz-Bonilla A, Fernandez-Garcia M.},
journal = {Nanomaterials (Basel)},
year = {2017},
doi = {10.3390/nano7020048},
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@article{lin133820,
title = {One pot synthesis of GDP-mannose by a multi-enzyme cascade for enzymatic assembly of lipid-linked oligosaccharides.},
author = {Rexer TFT, Schildbach A, Klapproth J, Schierhorn A, Mahour R, Pietzsch M, Rapp E, Reichl U.},
journal = {Biotechnol Bioeng},
year = {2018},
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@article{lin133860,
title = {Long-adapter single-strand oligonucleotide probes for the massively multiplexed cloning of kilobase genome regions.},
author = {Tosi L, Sridhara V, Yang Y, Guan D, Shpilker P, Segata N, Larman HB, Parekkadan B.},
journal = {Nat Biomed Eng},
year = {2017},
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@article{lin133849,
title = {An integrated electrolysis - electrospray - ionization antimicrobial platform using Engineered Water Nanostructures (EWNS) for food safety applications.},
author = {Vaze N, Jiang Y, Mena L, Zhang Y, Bello D, Leonard SS, Morris AM, Eleftheriadou M, Pyrgiotakis G, Demokritou P.},
journal = {Food Control},
year = {2018},
doi = {10.1016/j.foodcont.2017.09.034},
pmid = {29332999}
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@article{lin133843,
title = {Epigallocatechin Gallate-Mediated Cell Death Is Triggered by Accumulation of Reactive Oxygen Species Induced via the Cpx Two-Component System in Escherichia coli.},
author = {Nie T, Zhang C, Huang A, Li P.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.00246},
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@article{lin133852,
title = {Influence of Glucose Availability and CRP Acetylation on the Genome-Wide Transcriptional Response of Escherichia coli: Assessment by an Optimized Factorial Microarray Analysis.},
author = {Guebel DV, Torres NV.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.00941},
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@article{lin133844,
title = {Structural characterization of recombinant streptokinase following recovery from inclusion bodies using different chemical solubilization treatments.},
author = {Babaei Sheli K, Ghorbani M, Hekmat A, Soltanian B, Mohammadian A, Jalalirad R.},
journal = {Biotechnol Rep (Amst)},
year = {2018},
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@article{lin133848,
title = {Modification of Honeybee Silk by the Addition of Antimicrobial Agents.},
author = {Trueman HE, Sriskantha A, Qu Y, Rapson TD, Sutherland TD.},
journal = {ACS Omega},
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@article{lin133837,
title = {Did aculeate silk evolve as an antifouling material?},
author = {Sutherland TD, Sriskantha A, Rapson TD, Kaehler BD, Huttley GA.},
journal = {PLoS One},
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@article{lin133842,
title = {Biocidal Agents Used for Disinfection Can Enhance Antibiotic Resistance in Gram-Negative Species.},
author = {Kampf G.},
journal = {Antibiotics (Basel)},
year = {2018},
doi = {10.3390/antibiotics7040110},
pmid = {30558235}
}
@article{lin133856,
title = {The Ribosome as a Missing Link in Prebiotic Evolution III: Over-Representation of tRNA- and rRNA-Like Sequences and Plieofunctionality of Ribosome-Related Molecules Argues for the Evolution of Primitive Genomes from Ribosomal RNA Modules.},
author = {Root-Bernstein R, Root-Bernstein M.},
journal = {Int J Mol Sci},
year = {2019},
doi = {10.3390/ijms20010140},
pmid = {30609737}
}
@article{lin133854,
title = {Oral Neutrophils Characterized: Chemotactic, Phagocytic, and Neutrophil Extracellular Trap (NET) Formation Properties.},
author = {Moonen CGJ, Hirschfeld J, Cheng L, Chapple ILC, Loos BG, Nicu EA.},
journal = {Front Immunol},
year = {2019},
doi = {10.3389/fimmu.2019.00635},
pmid = {30984197}
}
@article{lin133845,
title = {Comparison of engineered Escherichia coli AF1000 and BL21 strains for (R)-3-hydroxybutyrate production in fed-batch cultivation.},
author = {Perez-Zabaleta M, Guevara-Martinez M, Gustavsson M, Quillaguaman J, Larsson G, van Maris AJA.},
journal = {Appl Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s00253-019-09876-y},
pmid = {31104101}
}
@article{lin133850,
title = {One-Step Purification of Microbially Produced Hydrophobic Terpenes via Process Chromatography.},
author = {Grozdev L, Kaiser J, Berensmeier S.},
journal = {Front Bioeng Biotechnol},
year = {2019},
doi = {10.3389/fbioe.2019.00185},
pmid = {31417900}
}
@article{lin133841,
title = {Characterization of Bacteria and Inducible Phages in an Intensive Care Unit.},
author = {Pacifico C, Hilbert M, Sofka D, Dinhopl N, Pap IJ, Aspock C, Hilbert F.},
journal = {J Clin Med},
year = {2019},
doi = {10.3390/jcm8091433},
pmid = {31510095}
}
@article{lin133832,
title = {Natural Occurrence of Escherichia coli-Infecting Bacteriophages in Clinical Samples.},
author = {Pacifico C, Hilbert M, Sofka D, Dinhopl N, Pap IJ, Aspock C, Carrico JA, Hilbert F.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.02484},
pmid = {31736918}
}
@article{lin133830,
title = {Improving L-serine formation by Escherichia coli by reduced uptake of produced L-serine.},
author = {Wang C, Wu J, Shi B, Shi J, Zhao Z.},
journal = {Microb Cell Fact},
year = {2020},
doi = {10.1186/s12934-020-01323-2},
pmid = {32169078}
}
@article{lin133834,
title = {Numerical Study of Bacteria Containing Droplets Aerosolized From Hot Surfaces.},
author = {Mirskaya E, Maksimenko V, Zagaynov V, Agranovski I.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-66081-y},
pmid = {32499544}
}
@article{lin133836,
title = {Potential Application of Protamine for Antimicrobial Biomaterials in Bone Tissue Engineering.},
author = {Honda M, Matsumoto M, Aizawa M.},
journal = {Int J Mol Sci},
year = {2020},
doi = {10.3390/ijms21124368},
pmid = {32575446}
}
@article{lin133868,
title = {Secretion of recombinant proteins from E. coli.},
author = {Kleiner-Grote GRM, Risse JM, Friehs K.},
journal = {Eng Life Sci},
year = {2018},
doi = {10.1002/elsc.201700200},
pmid = {32624934}
}
@article{lin133884,
title = {A nucleotidyltransferase toxin inhibits growth of Mycobacterium tuberculosis through inactivation of tRNA acceptor stems.},
author = {Cai Y, Usher B, Gutierrez C, Tolcan A, Mansour M, Fineran PC, Condon C, Neyrolles O, Genevaux P, Blower TR.},
journal = {Sci Adv},
year = {2020},
doi = {10.1126/sciadv.abb6651},
pmid = {32923609}
}
@article{lin133815,
title = {Identification of Microorganisms by Liquid Chromatography-Mass Spectrometry (LC-MS1) and in Silico Peptide Mass Libraries.},
author = {Lasch P, Schneider A, Blumenscheit C, Doellinger J.},
journal = {Mol Cell Proteomics},
year = {2020},
doi = {10.1074/mcp.tir120.002061},
pmid = {32998977}
}
@article{lin133816,
title = {Compensatory intestinal immunoglobulin response after vancomycin treatment in humans.},
author = {Scheithauer TPM, Bakker GJ, Winkelmeijer M, Davids M, Nieuwdorp M, van Raalte DH, Herrema H.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1875109},
pmid = {33475461}
}
@article{lin133835,
title = {Evaluation and comparison of recombinase polymerase amplification coupled with lateral-flow bioassay for Escherichia coli O157:H7 detection using diifeerent genes.},
author = {Rani A, Ravindran VB, Surapaneni A, Shahsavari E, Haleyur N, Mantri N, Ball AS.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-81312-6},
pmid = {33479307}
}
@article{lin133838,
title = {Identification of Quinone Degradation as a Triggering Event for Intense Pulsed Light-Elicited Metabolic Changes in Escherichia coli by Metabolomic Fingerprinting.},
author = {Mao Q, Liu J, Wiertzema JR, Chen D, Chen P, Baumler DJ, Ruan R, Chen C.},
journal = {Metabolites},
year = {2021},
doi = {10.3390/metabo11020102},
pmid = {33578995}
}
@article{lin133847,
title = {Quaternary Ammonium Compounds (QACs) and Ionic Liquids (ILs) as Biocides: From Simple Antiseptics to Tunable Antimicrobials.},
author = {Vereshchagin AN, Frolov NA, Egorova KS, Seitkalieva MM, Ananikov VP.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22136793},
pmid = {34202677}
}
@article{lin133833,
title = {Engineering the Outer Membrane Could Facilitate Better Bacterial Performance and Effectively Enhance Poly-3-Hydroxybutyrate Accumulation.},
author = {Wang J, Ma W, Fang Y, Zhang H, Liang H, Liu H, Wang T, Chen S, Ji J, Wang X.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.01389-21},
pmid = {34550763}
}
@article{lin133826,
title = {Adhesive Antimicrobial Peptides Containing 3,4-Dihydroxy-L-Phenylalanine Residues for Direct One-Step Surface Coating.},
author = {Hwang YE, Im S, Kim H, Sohn JH, Cho BK, Cho JH, Sung BH, Kim SC.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms222111915},
pmid = {34769345}
}
@article{lin133863,
title = {Massively parallel DNA target capture using long adapter single stranded oligonucleotide (LASSO) probes assembled through a novel DNA recombinase mediated methodology.},
author = {Tosi L, Chkaiban L, Larman BH, Rosenfeld JA, Parekkadan B.},
journal = {Biotechnol J},
year = {2022},
doi = {10.1002/biot.202100240},
pmid = {34775678}
}
@article{lin133827,
title = {An ultrasensitive nanofiber-based assay for enzymatic hydrolysis and deep-sea microbial degradation of cellulose.},
author = {Tsudome M, Tachioka M, Miyazaki M, Uchimura K, Tsuda M, Takaki Y, Deguchi S.},
journal = {iScience},
year = {2022},
doi = {10.1016/j.isci.2022.104732},
pmid = {36039358}
}
@article{lin133828,
title = {Semi-Biosynthetic Production of Surface-Binding Adhesive Antimicrobial Peptides Using Intein-Mediated Protein Ligation.},
author = {Hwang YE, Im S, Cho JH, Lee W, Cho BK, Sung BH, Kim SC.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms232315202},
pmid = {36499519}
}
@article{lin133823,
title = {A quantitative prevalence of Escherichia coliO157 in different food samples using real-time qPCR method.},
author = {Pakbin B, Bruck WM, Bruck TB, Allahyari S, Ashrafi Tamai I.},
journal = {Food Sci Nutr},
year = {2023},
doi = {10.1002/fsn3.3055},
pmid = {36655112}
}
@article{lin133825,
title = {Point-of-Care Lateral Flow Detection of Viable Escherichia coli O157:H7 Using an Improved Propidium Monoazide-Recombinase Polymerase Amplification Method.},
author = {Rani A, Dike CC, Mantri N, Ball A.},
journal = {Foods},
year = {2022},
doi = {10.3390/foods11203207},
pmid = {37430957}
}
@article{lin133846,
title = {Enzymatic properties and inhibition tolerance analysis of key enzymes in beta-phenylethanol anabolic pathway of Saccharomyces cerevisiae HJ.},
author = {Yang Q, Liu S, Zhao Y, Han X, Chang R, Mao J.},
journal = {Synth Syst Biotechnol},
year = {2023},
doi = {10.1016/j.synbio.2023.11.006},
pmid = {38161995}
}
@article{lin133829,
title = {Fractionation of the Caspian sand goby epidermal exudates using membrane ultrafiltration and reversed-phase chromatography: an investigation on bioactivities.},
author = {Akhavan-Bahabadi M, Paknejad H, Hedayati A, Habibi-Rezaei M.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-52126-z},
pmid = {38242928}
}
@article{lin133813,
title = {Detection, isolation and characterization of phage-host complexes using BONCAT and click chemistry.},
author = {Hellwig P, Dittrich A, Heyer R, Reichl U, Benndorf D.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1434301},
pmid = {39296306}
}
@article{lin133824,
title = {A novel broad-spectrum antibacterial and anti-malarial Anopheles gambiae Cecropin promotes microbial clearance during pupation.},
author = {Barreto C, Cardoso-Jaime V, Dimopoulos G.},
journal = {PLoS Pathog},
year = {2024},
doi = {10.1371/journal.ppat.1012652},
pmid = {39441862}
}
@article{lin133814,
title = {Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesized proteins.},
author = {Hellwig P, Kautzner D, Heyer R, Dittrich A, Wibberg D, Busche T, Winkler A, Reichl U, Benndorf D.},
journal = {ISME Commun},
year = {2024},
doi = {10.1093/ismeco/ycae153},
pmid = {39736848}
}
@article{lin133831,
title = {Peptidoglycan recognition protein PGRP-5 is involved in immune defence and neuro-behavioral disorders in zebrafish embryos.},
author = {Li X, Xiong G, Luo M, Mao S, Zhang R, Meng Z, Li J, Liao X.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0315714},
pmid = {39888929}
}
@article{lin133821,
title = {Preventive Activity of an Arginine-Based Surfactant on the Formation of Mixed Biofilms of Fluconazole-Resistant Candida albicans and Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli on Central Venous Catheters.},
author = {Perez L, da Silva CR, do Amaral Valente Sa LG, Neto JBA, Cabral VPF, Rodrigues DS, Moreira LEA, Silveira MJCB, Ferreira TL, da Silva AR, Cavalcanti BC, Ricardo NMPS, Rodrigues FAM, Junior HVN.},
journal = {Antibiotics (Basel)},
year = {2025},
doi = {10.3390/antibiotics14030227},
pmid = {40149039}
}
@article{lin133822,
title = {Mapping protein-metabolite interactions in E. coli by integrating chromatographic techniques and co-fractionation mass spectrometry.},
author = {Wagner M, Kang J, Mercado C, Thirumlaikumar VP, Gorka M, Zillmer H, Guo J, Minen RI, Plecki CF, Dehesh K, Schroeder FC, Walther D, Skirycz A.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.112611},
pmid = {40491478}
}