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title = {Heat-labile toxin from Bordetella parapertussis induces contraction of smooth muscle cells in culture.},
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title = {Cloning, nucleotide sequence and heterologous expression of the protective outer-membrane protein P.68 pertactin from Bordetella bronchiseptica.},
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title = {The bvg-dependent promoters show similar behaviour in different Bordetella species and share sequence homologies.},
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title = {P.70 pertactin, an outer-membrane protein from Bordetella parapertussis: cloning, nucleotide sequence and surface expression in Escherichia coli.},
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title = {Experimental pneumonia in mice produced by combined administration of Bordetella parapertussis and Pasteurella haemolytica isolated from sheep.},
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title = {Pneumonia in mice produced by cell-free extract of cultures of Bordetella parapertussis.},
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journal = {Infect Immun},
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pmid = {2808670}
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title = {Neutralizing antibodies to pertussis toxin in whooping cough.},
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title = {Bordetellae and charcoal horse blood agar: inactivation of antibiotics in agar during prolonged incubation for susceptibility testing.},
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title = {Characterization of IS1001, an insertion sequence element of Bordetella parapertussis.},
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title = {Identification and cloning of waaF (rfaF) from Bordetella pertussis and use to generate mutants of Bordetella spp. with deep rough lipopolysaccharide.},
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title = {Identification of AlcR, an AraC-type regulator of alcaligin siderophore synthesis in Bordetella bronchiseptica and Bordetella pertussis.},
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title = {Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds.},
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title = {Characterisation of the urease gene cluster in Bordetella bronchiseptica.},
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journal = {Gene},
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title = {In vitro susceptibilities of Bordetella pertussis and Bordetella parapertussis to two ketolides (HMR 3004 and HMR 3647), four macrolides (azithromycin, clarithromycin, erythromycin A, and roxithromycin), and two ansamycins (rifampin and rifapentine).},
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journal = {Antimicrob Agents Chemother},
year = {1998},
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title = {Lipopolysaccharide expression within the genus Bordetella: influence of temperature and phase variation.},
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title = {Vag8, a Bordetella pertussis bvg-regulated protein.},
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journal = {Infect Immun},
year = {1998},
doi = {10.1128/iai.66.8.3985-3989.1998},
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title = {Pasteurella haemolytica complicated respiratory infections in sheep and goats.},
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title = {Molecular and functional analysis of the lipopolysaccharide biosynthesis locus wlb from Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.},
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year = {1998},
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title = {Whooping cough caused by Bordetella pertussis and Bordetella parapertussis in an immunized population.},
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doi = {10.1128/jcm.36.11.3211-3216.1998},
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title = {Human but not ovine isolates of Bordetella parapertussis are highly clonal as determined by PCR-based RAPD fingerprinting.},
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journal = {Infection},
year = {1998},
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author = {van den Akker WM.},
journal = {Biochem Biophys Res Commun},
year = {1998},
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year = {1998},
doi = {10.11150/kansenshogakuzasshi1970.72.1182},
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title = {Nested duplex PCR to detect Bordetella pertussis and Bordetella parapertussis and its application in diagnosis of pertussis in nonmetropolitan Southeast Queensland, Australia.},
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journal = {J Clin Microbiol},
year = {1999},
doi = {10.1128/jcm.37.3.606-610.1999},
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title = {Role of antibodies against Bordetella pertussis virulence factors in adherence of Bordetella pertussis and Bordetella parapertussis to human bronchial epithelial cells.},
author = {van den Berg BM, Beekhuizen H, Mooi FR, van Furth R.},
journal = {Infect Immun},
year = {1999},
doi = {10.1128/iai.67.3.1050-1055.1999},
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title = {An epidemic of a pertussis-like illness caused by Chlamydia pneumoniae.},
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journal = {Pediatr Infect Dis J},
year = {1999},
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title = {Activation and inactivation of Pseudomonas stutzeri methylbenzene catabolism pathways mediated by a transposable element.},
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year = {1999},
doi = {10.1128/aem.65.5.1876-1882.1999},
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title = {Phylogenetic analysis of Ara+ and Ara- Burkholderia pseudomallei isolates and development of a multiplex PCR procedure for rapid discrimination between the two biotypes.},
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journal = {J Clin Microbiol},
year = {1999},
doi = {10.1128/jcm.37.6.1906-1912.1999},
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title = {Genetic basis for lipopolysaccharide O-antigen biosynthesis in bordetellae.},
author = {Preston A, Allen AG, Cadisch J, Thomas R, Stevens K, Churcher CM, Badcock KL, Parkhill J, Barrell B, Maskell DJ.},
journal = {Infect Immun},
year = {1999},
doi = {10.1128/iai.67.8.3763-3767.1999},
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title = {Cell-mediated immune responses in four-year-old children after primary immunization with acellular pertussis vaccines.},
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journal = {Infect Immun},
year = {1999},
doi = {10.1128/iai.67.8.4064-4071.1999},
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title = {Comparison of PCR, culture, and direct fluorescent-antibody testing for detection of Bordetella pertussis.},
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journal = {J Clin Microbiol},
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title = {Parapertussis and pertussis: differences and similarities in incidence, clinical course, and antibody responses.},
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year = {1999},
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title = {Bordetella pertussis, Bordetella parapertussis, Mycoplasma pneumoniae, Chlamydia pneumoniae and persistent cough in children.},
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journal = {Scand J Infect Dis},
year = {1999},
doi = {10.1080/00365549950163581},
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title = {Disruption of tonB in Bordetella bronchiseptica and Bordetella pertussis prevents utilization of ferric siderophores, haemin and haemoglobin as iron sources.},
author = {Nicholson ML, Beall B.},
journal = {Microbiology (Reading)},
year = {1999},
doi = {10.1099/00221287-145-9-2453},
pmid = {10517598}
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title = {Bordetella bronchiseptica-mediated cytotoxicity to macrophages is dependent on bvg-regulated factors, including pertactin.},
author = {Forde CB, Shi X, Li J, Roberts M.},
journal = {Infect Immun},
year = {1999},
doi = {10.1128/iai.67.11.5972-5978.1999},
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title = {Type 1 fimbriation and phase switching in a natural Escherichia coli fimB null strain, Nissle 1917.},
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journal = {J Bacteriol},
year = {1999},
doi = {10.1128/jb.181.24.7470-7478.1999},
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@article{lin65785,
title = {Pig and goat blood as substitutes for sheep blood in blood-supplemented agar media.},
author = {Anand C, Gordon R, Shaw H, Fonseca K, Olsen M.},
journal = {J Clin Microbiol},
year = {2000},
doi = {10.1128/jcm.38.2.591-594.2000},
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@article{lin65720,
title = {Infective endocarditis complicated with progressive heart failure due to beta-lactamase-producing Cardiobacterium hominis.},
author = {Lu PL, Hsueh PR, Hung CC, Teng LJ, Jang TN, Luh KT.},
journal = {J Clin Microbiol},
year = {2000},
doi = {10.1128/jcm.38.5.2015-2017.2000},
pmid = {10790145}
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@article{lin65832,
title = {A complex insertion sequence cluster at a point of interaction between the linear plasmid SCP1 and the linear chromosome of Streptomyces coelicolor A3(2).},
author = {Yamasaki M, Miyashita K, Cullum J, Kinashi H.},
journal = {J Bacteriol},
year = {2000},
doi = {10.1128/jb.182.11.3104-3110.2000},
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title = {In vitro activity of gemifloxacin and other antimicrobial agents against isolates of Bordetella pertussis and Bordetella parapertussis.},
author = {Mortensen JE, Rodgers GL.},
journal = {J Antimicrob Chemother},
year = {2000},
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title = {Molecular characterization of the Mycoplasma gallisepticum pvpA gene which encodes a putative variable cytadhesin protein.},
author = {Boguslavsky S, Menaker D, Lysnyansky I, Liu T, Levisohn S, Rosengarten R, Garcia M, Yogev D.},
journal = {Infect Immun},
year = {2000},
doi = {10.1128/iai.68.7.3956-3964.2000},
pmid = {10858209}
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title = {Polymorphism of repeated regions of pertactin in Bordetella pertussis, Bordetella parapertussis, and Bordetella bronchiseptica.},
author = {Boursaux-Eude C, Guiso N.},
journal = {Infect Immun},
year = {2000},
doi = {10.1128/iai.68.8.4815-4817.2000},
pmid = {10899896}
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@article{lin65766,
title = {A role for lipopolysaccharide in turkey tracheal colonization by Bordetella avium as demonstrated in vivo and in vitro.},
author = {Spears PA, Temple LM, Orndorff PE.},
journal = {Mol Microbiol},
year = {2000},
doi = {10.1046/j.1365-2958.2000.01963.x},
pmid = {10931292}
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@article{lin65749,
title = {Discovery, purification, and characterization of a temperate transducing bacteriophage for Bordetella avium.},
author = {Shelton CB, Crosslin DR, Casey JL, Ng S, Temple LM, Orndorff PE.},
journal = {J Bacteriol},
year = {2000},
doi = {10.1128/jb.182.21.6130-6136.2000},
pmid = {11029434}
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title = {Multiple roles for Bordetella lipopolysaccharide molecules during respiratory tract infection.},
author = {Harvill ET, Preston A, Cotter PA, Allen AG, Maskell DJ, Miller JF.},
journal = {Infect Immun},
year = {2000},
doi = {10.1128/iai.68.12.6720-6728.2000},
pmid = {11083787}
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@article{lin65500,
title = {Chemical and serological characterization of the Bordetella hinzii lipopolysaccharides.},
author = {Aussel L, Chaby R, Le Blay K, Kelly J, Thibault P, Perry MB, Caroff M.},
journal = {FEBS Lett},
year = {2000},
doi = {10.1016/s0014-5793(00)02181-5},
pmid = {11086162}
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@article{lin65816,
title = {Restriction endonuclease analysis discriminates Bordetella bronchiseptica isolates.},
author = {Sacco RE, Register KB, Nordholm GE.},
journal = {J Clin Microbiol},
year = {2000},
doi = {10.1128/jcm.38.12.4387-4393.2000},
pmid = {11101569}
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@article{lin65656,
title = {Rapid-cycle PCR method to detect Bordetella pertussis that fulfills all consensus recommendations for use of PCR in diagnosis of pertussis.},
author = {Farrell DJ, McKeon M, Daggard G, Loeffelholz MJ, Thompson CJ, Mukkur TK.},
journal = {J Clin Microbiol},
year = {2000},
doi = {10.1128/jcm.38.12.4499-4502.2000},
pmid = {11101586}
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title = {Genomics of Bordetella pertussis toxins.},
author = {Antoine R, Raze D, Locht C.},
journal = {Int J Med Microbiol},
year = {2000},
doi = {10.1016/s1438-4221(00)80026-0},
pmid = {11111902}
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@article{lin65536,
title = {Identification and characterization of BipA, a Bordetella Bvg-intermediate phase protein.},
author = {Stockbauer KE, Fuchslocher B, Miller JF, Cotter PA.},
journal = {Mol Microbiol},
year = {2001},
doi = {10.1046/j.1365-2958.2001.02191.x},
pmid = {11123689}
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@article{lin65448,
title = {Adherence of ovine and human Bordetella parapertussis to continuous cell lines and ovine tracheal organ culture.},
author = {Lund SJ, Rowe HA, Parton R, Donachie W.},
journal = {FEMS Microbiol Lett},
year = {2001},
doi = {10.1111/j.1574-6968.2001.tb09469.x},
pmid = {11164308}
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@article{lin65851,
title = {Phylogenetic analysis of culturable dimethyl sulfide-producing bacteria from a spartina-dominated salt marsh and estuarine water.},
author = {Ansede JH, Friedman R, Yoch DC.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.3.1210-1217.2001},
pmid = {11229912}
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@article{lin65864,
title = {Expression of the putative siderophore receptor gene bfrZ is controlled by the extracytoplasmic-function sigma factor BupI in Bordetella bronchiseptica.},
author = {Pradel E, Locht C.},
journal = {J Bacteriol},
year = {2001},
doi = {10.1128/jb.183.9.2910-2917.2001},
pmid = {11292812}
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@article{lin65632,
title = {Serum immunoglobulin G antibody responses to Bordetella pertussis lipooligosaccharide and B. parapertussis lipopolysaccharide in children with pertussis and parapertussis.},
author = {Trollfors B, Lagergard T, Taranger J, Bergfors E, Schneerson R, Robbins JB.},
journal = {Clin Diagn Lab Immunol},
year = {2001},
doi = {10.1128/cdli.8.5.1015-1017.2001},
pmid = {11527820}
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title = {Current pharmacotherapy of pertussis.},
author = {Kerr JR, Preston NW.},
journal = {Expert Opin Pharmacother},
year = {2001},
doi = {10.1517/14656566.2.8.1275},
pmid = {11584995}
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@article{lin65882,
title = {Heme utilization in Bordetella avium is regulated by RhuI, a heme-responsive extracytoplasmic function sigma factor.},
author = {Kirby AE, Metzger DJ, Murphy ER, Connell TD.},
journal = {Infect Immun},
year = {2001},
doi = {10.1128/iai.69.11.6951-6961.2001},
pmid = {11598070}
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@article{lin65625,
title = {Reciprocal protective immunity against Bordetella pertussis and Bordetella parapertussis in a murine model of respiratory infection.},
author = {Watanabe M, Nagai M.},
journal = {Infect Immun},
year = {2001},
doi = {10.1128/iai.69.11.6981-6986.2001},
pmid = {11598073}
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title = {[Susceptibility to macrolide antibiotics of Bordetella pertussis and Bordetella parapertussis strains isolated from whooping cough patients in 1968 and in 1997-99].},
author = {Chodorowska M, Kuklinska D, Tyski S.},
journal = {Med Dosw Mikrobiol},
year = {2001},
pmid = {11757403}
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title = {Multiplex LightCycler PCR assay for detection and differentiation of Bordetella pertussis and Bordetella parapertussis in nasopharyngeal specimens.},
author = {Sloan LM, Hopkins MK, Mitchell PS, Vetter EA, Rosenblatt JE, Harmsen WS, Cockerill FR, Patel R.},
journal = {J Clin Microbiol},
year = {2002},
doi = {10.1128/jcm.40.1.96-100.2002},
pmid = {11773099}
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@article{lin65510,
title = {Relaxed acyl chain specificity of Bordetella UDP-N-acetylglucosamine acyltransferases.},
author = {Sweet CR, Preston A, Toland E, Ramirez SM, Cotter RJ, Maskell DJ, Raetz CR.},
journal = {J Biol Chem},
year = {2002},
doi = {10.1074/jbc.m201057200},
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@article{lin65609,
title = {Ribosomal DNA-directed PCR for identification of Achromobacter (Alcaligenes) xylosoxidans recovered from sputum samples from cystic fibrosis patients.},
author = {Liu L, Coenye T, Burns JL, Whitby PW, Stull TL, LiPuma JJ.},
journal = {J Clin Microbiol},
year = {2002},
doi = {10.1128/jcm.40.4.1210-1213.2002},
pmid = {11923333}
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title = {Real-time LightCycler PCR for detection and discrimination of Bordetella pertussis and Bordetella parapertussis.},
author = {Kosters K, Reischl U, Schmetz J, Riffelmann M, Wirsing von Konig CH.},
journal = {J Clin Microbiol},
year = {2002},
doi = {10.1128/jcm.40.5.1719-1722.2002},
pmid = {11980949}
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@article{lin65819,
title = {Base-specific fragmentation of amplified 16S rRNA genes analyzed by mass spectrometry: a tool for rapid bacterial identification.},
author = {von Wintzingerode F, Bocker S, Schlotelburg C, Chiu NH, Storm N, Jurinke C, Cantor CR, Gobel UB, van den Boom D.},
journal = {Proc Natl Acad Sci U S A},
year = {2002},
doi = {10.1073/pnas.102165899},
pmid = {11983869}
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title = {Comparative phenotypic analysis of the Bordetella parapertussis isolate chosen for genomic sequencing.},
author = {Heininger U, Cotter PA, Fescemyer HW, Martinez de Tejada G, Yuk MH, Miller JF, Harvill ET.},
journal = {Infect Immun},
year = {2002},
doi = {10.1128/iai.70.7.3777-3784.2002},
pmid = {12065521}
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@article{lin65876,
title = {A repressor protein, PhaR, regulates polyhydroxyalkanoate (PHA) synthesis via its direct interaction with PHA.},
author = {Maehara A, Taguchi S, Nishiyama T, Yamane T, Doi Y.},
journal = {J Bacteriol},
year = {2002},
doi = {10.1128/jb.184.14.3992-4002.2002},
pmid = {12081972}
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title = {Comparison of LightCycler PCR, rapid antigen immunoassay, and culture for detection of group A streptococci from throat swabs.},
author = {Uhl JR, Adamson SC, Vetter EA, Schleck CD, Harmsen WS, Iverson LK, Santrach PJ, Henry NK, Cockerill FR.},
journal = {J Clin Microbiol},
year = {2003},
doi = {10.1128/jcm.41.1.242-249.2003},
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title = {Role of systemic and mucosal immune responses in reciprocal protection against Bordetella pertussis and Bordetella parapertussis in a murine model of respiratory infection.},
author = {Watanabe M, Nagai M.},
journal = {Infect Immun},
year = {2003},
doi = {10.1128/iai.71.2.733-738.2003},
pmid = {12540552}
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title = {Description of a multiplex Bordetella pertussis and Bordetella parapertussis LightCycler PCR assay with inhibition control.},
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journal = {Diagn Microbiol Infect Dis},
year = {2003},
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title = {Comparison of the Bordetella pertussis and Bordetella parapertussis isolates circulating in Saint Petersburg between 1998 and 2000 with Russian vaccine strains.},
author = {Kourova N, Caro V, Weber C, Thiberge S, Chuprinina R, Tseneva G, Guiso N.},
journal = {J Clin Microbiol},
year = {2003},
doi = {10.1128/jcm.41.8.3706-3711.2003},
pmid = {12904379}
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title = {Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.},
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journal = {Nat Genet},
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title = {Bordetella pertussis acquires resistance to complement-mediated killing in vivo.},
author = {Pishko EJ, Betting DJ, Hutter CS, Harvill ET.},
journal = {Infect Immun},
year = {2003},
doi = {10.1128/iai.71.9.4936-4942.2003},
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@article{lin65734,
title = {Development and clinical evaluation of an internally controlled, single-tube multiplex real-time PCR assay for detection of Legionella pneumophila and other Legionella species.},
author = {Templeton KE, Scheltinga SA, Sillekens P, Crielaard JW, van Dam AP, Goossens H, Claas EC.},
journal = {J Clin Microbiol},
year = {2003},
doi = {10.1128/jcm.41.9.4016-4021.2003},
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title = {Evaluation of real-time PCR for detection of and discrimination between Bordetella pertussis, Bordetella parapertussis, and Bordetella holmesii for clinical diagnosis.},
author = {Templeton KE, Scheltinga SA, van der Zee A, Diederen BM, van Kruijssen A, Goossens H, Kuijper E, Claas EC.},
journal = {J Clin Microbiol},
year = {2003},
doi = {10.1128/jcm.41.9.4121-4126.2003},
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title = {Diphtheria-tetanus-pertussis vaccine combined with Bordetella parapertussis vaccine.},
author = {KOHLER-KUBELKA N.},
journal = {J Hyg (Lond)},
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title = {Identification and characterization of a unique adenosine kinase from Mycobacterium tuberculosis.},
author = {Long MC, Escuyer V, Parker WB.},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/jb.185.22.6548-6555.2003},
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title = {PFGE and pertactin gene sequencing suggest limited genetic variability within the Finnish Bordetella parapertussis population.},
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journal = {J Med Microbiol},
year = {2003},
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title = {Glycosyl phosphatidylinositol-anchored proteins in chemosensory signaling: antisense manipulation of Paramecium tetraurelia PIG-A gene expression.},
author = {Yano J, Rachochy V, Van Houten JL.},
journal = {Eukaryot Cell},
year = {2003},
doi = {10.1128/ec.2.6.1211-1219.2003},
pmid = {14665456}
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@article{lin65881,
title = {RhuR, an extracytoplasmic function sigma factor activator, is essential for heme-dependent expression of the outer membrane heme and hemoprotein receptor of Bordetella avium.},
author = {Kirby AE, King ND, Connell TD.},
journal = {Infect Immun},
year = {2004},
doi = {10.1128/iai.72.2.896-907.2004},
pmid = {14742534}
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title = {Determination of serum antibody to Bordetella pertussis adenylate cyclase toxin in vaccinated and unvaccinated children and in children and adults with pertussis.},
author = {Cherry JD, Xing DX, Newland P, Patel K, Heininger U, Corbel MJ.},
journal = {Clin Infect Dis},
year = {2004},
doi = {10.1086/381204},
pmid = {14765342}
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title = {Whole-genome analyses of speciation events in pathogenic Brucellae.},
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title = {Isolation of poly-3-hydroxybutyrate metabolism genes from complex microbial communities by phenotypic complementation of bacterial mutants.},
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title = {BopC is a novel type III effector secreted by Bordetella bronchiseptica and has a critical role in type III-dependent necrotic cell death.},
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title = {Chronic cough due to acute bronchitis: ACCP evidence-based clinical practice guidelines.},
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journal = {Chest},
year = {2006},
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title = {Coexistence of Burkholderia, Cupriavidus, and Rhizobium sp. nodule bacteria on two Mimosa spp. in Costa Rica.},
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title = {Use of single-point genome signature tags as a universal tagging method for microbial genome surveys.},
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doi = {10.1128/aem.72.3.2092-2101.2006},
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title = {Complete structures of Bordetella bronchiseptica and Bordetella parapertussis lipopolysaccharides.},
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journal = {J Biol Chem},
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title = {[Molecular evidence for the lysogenic state of microorganisms belonging to the genus Bordetella and characterization of Bordetella parapertussis temperate bacteriophage 66(2.2)].},
author = {Siniashina LN, Karataev GI.},
journal = {Genetika},
year = {2006},
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journal = {Thorax},
year = {2006},
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title = {Development and evaluation of a loop-mediated isothermal amplification method for rapid diagnosis of Bordetella pertussis infection.},
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doi = {10.1128/jcm.44.5.1899-1902.2006},
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title = {The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.},
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title = {Live attenuated B. pertussis as a single-dose nasal vaccine against whooping cough.},
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title = {Identification of 17 Pseudomonas aeruginosa sRNAs and prediction of sRNA-encoding genes in 10 diverse pathogens using the bioinformatic tool sRNAPredict2.},
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title = {Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction.},
author = {Sebaihia M, Preston A, Maskell DJ, Kuzmiak H, Connell TD, King ND, Orndorff PE, Miyamoto DM, Thomson NR, Harris D, Goble A, Lord A, Murphy L, Quail MA, Rutter S, Squares R, Squares S, Woodward J, Parkhill J, Temple LM.},
journal = {J Bacteriol},
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title = {Differential in vitro expression of the brkA gene in Bordetella pertussis and Bordetella parapertussis clinical isolates.},
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title = {Genomic features of Bordetella parapertussis clades with distinct host species specificity.},
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journal = {Genome Biol},
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title = {Direct detection of Bordetella pertussis and Bordetella parapertussis: comparison of polymerase chain reaction and culture.},
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title = {Adaptive evolution of the Bordetella autotransporter pertactin.},
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journal = {J Evol Biol},
year = {2006},
doi = {10.1111/j.1420-9101.2006.01154.x},
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title = {Diagnosis of human respiratory syncytial virus infection using reverse transcription loop-mediated isothermal amplification.},
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title = {Using the nucleotide substitution rate matrix to detect horizontal gene transfer.},
author = {Hamady M, Betterton MD, Knight R.},
journal = {BMC Bioinformatics},
year = {2006},
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title = {Heme concentration dependence and metalloporphyrin inhibition of the system I and II cytochrome c assembly pathways.},
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journal = {J Bacteriol},
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title = {The structure of the core-O-chain linkage region of the lipopolysaccharide from Bordetella hinzii.},
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journal = {Carbohydr Res},
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title = {[Genetic diversity analysis of isolates belonging to Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica species].},
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title = {Detection and differentiation of Bordetella spp. by real-time PCR.},
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title = {Bordetella iron transport and virulence.},
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title = {Identification and biochemical characterization of two novel UDP-2,3-diacetamido-2,3-dideoxy-alpha-D-glucuronic acid 2-epimerases from respiratory pathogens.},
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title = {Use of a genetically defined double mutant strain of Bordetella bronchiseptica lacking adenylate cyclase and type III secretion as a live vaccine.},
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journal = {Infect Immun},
year = {2007},
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title = {Opsonophagocytic activity and other serological indications of Bordetella pertussis infection in military recruits in Norway.},
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journal = {Clin Vaccine Immunol},
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title = {Pathogen proteins eliciting antibodies do not share epitopes with host proteins: a bioinformatics approach.},
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title = {Construction and validation of a first-generation Bordetella bronchiseptica long-oligonucleotide microarray by transcriptional profiling the Bvg regulon.},
author = {Nicholson TL.},
journal = {BMC Genomics},
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journal = {Cochrane Database Syst Rev},
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title = {The O antigen enables Bordetella parapertussis to avoid Bordetella pertussis-induced immunity.},
author = {Wolfe DN, Goebel EM, Bjornstad ON, Restif O, Harvill ET.},
journal = {Infect Immun},
year = {2007},
doi = {10.1128/iai.00763-07},
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title = {A multiplex PCR assay for the detection of respiratory bacteriae in nasopharyngeal smears from children with acute respiratory disease.},
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title = {In vivo colonization profile study of Bordetella bronchiseptica in the nasal cavity.},
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journal = {FEMS Microbiol Lett},
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title = {Predicting protein function from structure--the roles of short-chain dehydrogenase/reductase enzymes in Bordetella O-antigen biosynthesis.},
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journal = {J Mol Biol},
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title = {Evaluation of 5'-MGB hybridization probes for detection of Bordetella pertussis and Bordetella parapertussis using different real-time PCR instruments.},
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title = {Simultaneous detection of Chlamydophila pneumoniae and Mycoplasma pneumoniae by use of molecular beacons in a duplex real-time PCR.},
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journal = {J Clin Microbiol},
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title = {Of mice and men: asymmetric interactions between Bordetella pathogen species.},
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journal = {Parasitology},
year = {2008},
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title = {A temperature-regulated Campylobacter jejuni gluconate dehydrogenase is involved in respiration-dependent energy conservation and chicken colonization.},
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title = {O antigen protects Bordetella parapertussis from complement.},
author = {Goebel EM, Wolfe DN, Elder K, Stibitz S, Harvill ET.},
journal = {Infect Immun},
year = {2008},
doi = {10.1128/iai.01629-07},
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title = {Molecular genetic basis of ribotyping.},
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journal = {Clin Microbiol Rev},
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title = {Serendipitous discovery of an immunoglobulin-binding autotransporter in Bordetella species.},
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journal = {Infect Immun},
year = {2008},
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title = {Development and evaluation of dual-target real-time polymerase chain reaction assays to detect Bordetella spp.},
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journal = {Diagn Microbiol Infect Dis},
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title = {Determination of protein structures--a series of fortunate events.},
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journal = {Biophys J},
year = {2008},
doi = {10.1529/biophysj.108.131789},
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title = {Highly plastic genome of Microcystis aeruginosa PCC 7806, a ubiquitous toxic freshwater cyanobacterium.},
author = {Frangeul L, Quillardet P, Castets AM, Humbert JF, Matthijs HC, Cortez D, Tolonen A, Zhang CC, Gribaldo S, Kehr JC, Zilliges Y, Ziemert N, Becker S, Talla E, Latifi A, Billault A, Lepelletier A, Dittmann E, Bouchier C, de Marsac NT.},
journal = {BMC Genomics},
year = {2008},
doi = {10.1186/1471-2164-9-274},
pmid = {18534010}
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title = {Infection with Bordetella parapertussis but not Bordetella pertussis causes pertussis-like disease in older pigs.},
author = {Elahi S, Thompson DR, Strom S, O'Connor B, Babiuk LA, Gerdts V.},
journal = {J Infect Dis},
year = {2008},
doi = {10.1086/589713},
pmid = {18540802}
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title = {Lipopolysaccharides from Bordetella pertussis and Bordetella parapertussis differently modulate human dendritic cell functions resulting in divergent prevalence of Th17-polarized responses.},
author = {Fedele G, Nasso M, Spensieri F, Palazzo R, Frasca L, Watanabe M, Ausiello CM.},
journal = {J Immunol},
year = {2008},
doi = {10.4049/jimmunol.181.1.208},
pmid = {18566386}
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title = {Comparative genomic profiling of Dutch clinical Bordetella pertussis isolates using DNA microarrays: identification of genes absent from epidemic strains.},
author = {King AJ, van Gorkom T, Pennings JL, van der Heide HG, He Q, Diavatopoulos D, Heuvelman K, van Gent M, van Leeuwen K, Mooi FR.},
journal = {BMC Genomics},
year = {2008},
doi = {10.1186/1471-2164-9-311},
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@article{lin65698,
title = {A comparative study of avian bordetella-like strains, Bordetella bronchiseptica, Alcaligenes faecalis and other related nonfermentable bacteria.},
author = {Hinz KH, Gluinder G, Romer KJ.},
journal = {Avian Pathol},
year = {1983},
doi = {10.1080/03079458308436168},
pmid = {18766782}
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@article{lin65661,
title = {Immunodominance in mouse and human CD4+ T-cell responses specific for the Bordetella pertussis virulence factor P.69 pertactin.},
author = {Stenger RM, Poelen MC, Moret EE, Kuipers B, Bruijns SC, Hoogerhout P, Hijnen M, King AJ, Mooi FR, Boog CJ, van Els CA.},
journal = {Infect Immun},
year = {2009},
doi = {10.1128/iai.00769-08},
pmid = {19015250}
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title = {Structural characterization of Bordetella parapertussis lipid A.},
author = {El Hamidi A, Novikov A, Karibian D, Perry MB, Caroff M.},
journal = {J Lipid Res},
year = {2009},
doi = {10.1194/jlr.m800454-jlr200},
pmid = {19017615}
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title = {Genome-wide survey of prokaryotic serine proteases: analysis of distribution and domain architectures of five serine protease families in prokaryotes.},
author = {Tripathi LP, Sowdhamini R.},
journal = {BMC Genomics},
year = {2008},
doi = {10.1186/1471-2164-9-549},
pmid = {19019219}
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title = {Prevalence of Bordetella pertussis and Bordetella parapertussis in infants presenting to the emergency department with bronchiolitis.},
author = {Walsh PF, Kimmel L, Feola M, Tran T, Lim C, De Salvia L, Pusavat J, Michaelson S, Nguyen TA, Emery K, Mordechai E, Adelson ME.},
journal = {J Emerg Med},
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@article{lin65795,
title = {Temporal signaling and differential expression of Bordetella iron transport systems: the role of ferrimones and positive regulators.},
author = {Brickman TJ, Armstrong SK.},
journal = {Biometals},
year = {2009},
doi = {10.1007/s10534-008-9189-9},
pmid = {19130264}
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@article{lin65577,
title = {Inefficient Toll-like receptor-4 stimulation enables Bordetella parapertussis to avoid host immunity.},
author = {Wolfe DN, Buboltz AM, Harvill ET.},
journal = {PLoS One},
year = {2009},
doi = {10.1371/journal.pone.0004280},
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title = {Minimum contradiction matrices in whole genome phylogenies.},
author = {Thuillard M.},
journal = {Evol Bioinform Online},
year = {2008},
doi = {10.4137/ebo.s909},
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title = {Evolution of acute infections and the invasion-persistence trade-off.},
author = {King AA, Shrestha S, Harvill ET, Bjornstad ON.},
journal = {Am Nat},
year = {2009},
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@article{lin65702,
title = {Characterization of WbpB, WbpE, and WbpD and reconstitution of a pathway for the biosynthesis of UDP-2,3-diacetamido-2,3-dideoxy-D-mannuronic acid in Pseudomonas aeruginosa.},
author = {Westman EL, McNally DJ, Charchoglyan A, Brewer D, Field RA, Lam JS.},
journal = {J Biol Chem},
year = {2009},
doi = {10.1074/jbc.m808583200},
pmid = {19282284}
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@article{lin65827,
title = {The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats.},
author = {Woo PC, Lau SK, Tse H, Teng JL, Curreem SO, Tsang AK, Fan RY, Wong GK, Huang Y, Loman NJ, Snyder LA, Cai JJ, Huang JD, Mak W, Pallen MJ, Lok S, Yuen KY.},
journal = {PLoS Genet},
year = {2009},
doi = {10.1371/journal.pgen.1000416},
pmid = {19283063}
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@article{lin65324,
title = {Genomic analysis of the adenylate cyclase-hemolysin C-terminal region of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.},
author = {Chenal-Francisque V, Caro V, Boursaux-Eude C, Guiso N.},
journal = {Res Microbiol},
year = {2009},
doi = {10.1016/j.resmic.2009.03.006},
pmid = {19379809}
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@article{lin65705,
title = {Dual detection of Legionella pneumophila and Legionella species by real-time PCR targeting the 23S-5S rRNA gene spacer region.},
author = {Yang G, Benson R, Pelish T, Brown E, Winchell JM, Fields B.},
journal = {Clin Microbiol Infect},
year = {2010},
doi = {10.1111/j.1469-0691.2009.02766.x},
pmid = {19438641}
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title = {Role of PCR in the diagnosis of pertussis infection in infants: 5 years' experience of provision of a same-day real-time PCR service in England and Wales from 2002 to 2007.},
author = {Fry NK, Duncan J, Wagner K, Tzivra O, Doshi N, Litt DJ, Crowcroft N, Miller E, George RC, Harrison TG.},
journal = {J Med Microbiol},
year = {2009},
doi = {10.1099/jmm.0.009878-0},
pmid = {19528165}
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@article{lin65824,
title = {Human Toll-like receptor 4 responses to P. gingivalis are regulated by lipid A 1- and 4'-phosphatase activities.},
author = {Coats SR, Jones JW, Do CT, Braham PH, Bainbridge BW, To TT, Goodlett DR, Ernst RK, Darveau RP.},
journal = {Cell Microbiol},
year = {2009},
doi = {10.1111/j.1462-5822.2009.01349.x},
pmid = {19552698}
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title = {Prevalence of Bordetella pertussis and Bordetella parapertussis in Samples Submitted for RSV Screening.},
author = {Walsh P, Overmeyer C, Kimmel L, Feola M, Pusavat J, Nguyen TA, Kuan S, Emery K, Rosengreen M, Mordechai E, Adelson ME.},
journal = {West J Emerg Med},
year = {2008},
pmid = {19561728}
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@article{lin65823,
title = {Hidden chromosome symmetry: in silico transformation reveals symmetry in 2D DNA walk trajectories of 671 chromosomes.},
author = {Poptsova MS, Larionov SA, Ryadchenko EV, Rybalko SD, Zakharov IA, Loskutov A.},
journal = {PLoS One},
year = {2009},
doi = {10.1371/journal.pone.0006396},
pmid = {19636424}
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title = {The Bordetella type III secretion system effector BteA contains a conserved N-terminal motif that guides bacterial virulence factors to lipid rafts.},
author = {French CT, Panina EM, Yeh SH, Griffith N, Arambula DG, Miller JF.},
journal = {Cell Microbiol},
year = {2009},
doi = {10.1111/j.1462-5822.2009.01361.x},
pmid = {19650828}
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title = {The O antigen is a critical antigen for the development of a protective immune response to Bordetella parapertussis.},
author = {Zhang X, Goebel EM, Rodriguez ME, Preston A, Harvill ET.},
journal = {Infect Immun},
year = {2009},
doi = {10.1128/iai.00667-09},
pmid = {19737902}
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title = {O antigen allows B. parapertussis to evade B. pertussis vaccine-induced immunity by blocking binding and functions of cross-reactive antibodies.},
author = {Zhang X, Rodriguez ME, Harvill ET.},
journal = {PLoS One},
year = {2009},
doi = {10.1371/journal.pone.0006989},
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@article{lin65660,
title = {Molecular evolution of the two-component system BvgAS involved in virulence regulation in Bordetella.},
author = {Herrou J, Debrie AS, Willery E, Renauld-Mongenie G, Locht C, Mooi F, Jacob-Dubuisson F, Antoine R.},
journal = {PLoS One},
year = {2009},
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@article{lin65615,
title = {The dlt operon of Bacillus cereus is required for resistance to cationic antimicrobial peptides and for virulence in insects.},
author = {Abi Khattar Z, Rejasse A, Destoumieux-Garzon D, Escoubas JM, Sanchis V, Lereclus D, Givaudan A, Kallassy M, Nielsen-Leroux C, Gaudriault S.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00892-09},
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title = {Crucial role for insertion sequence elements in Lactobacillus helveticus evolution as revealed by interstrain genomic comparison.},
author = {Kaleta P, O'Callaghan J, Fitzgerald GF, Beresford TP, Ross RP.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.01845-09},
pmid = {19880644}
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@article{lin65746,
title = {Structural motifs of the bacterial ribosomal proteins S20, S18 and S16 that contact rRNA present in the eukaryotic ribosomal proteins S25, S26 and S27A, respectively.},
author = {Malygin AA, Karpova GG.},
journal = {Nucleic Acids Res},
year = {2010},
doi = {10.1093/nar/gkp1170},
pmid = {20034956}
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@article{lin65491,
title = {IL-10 induction by Bordetella parapertussis limits a protective IFN-gamma response.},
author = {Wolfe DN, Karanikas AT, Hester SE, Kennett MJ, Harvill ET.},
journal = {J Immunol},
year = {2010},
doi = {10.4049/jimmunol.0803045},
pmid = {20042578}
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title = {Regulation of primary alloantibody response through antecedent exposure to a microbial T-cell epitope.},
author = {Hudson KE, Lin E, Hendrickson JE, Lukacher AE, Zimring JC.},
journal = {Blood},
year = {2010},
doi = {10.1182/blood-2009-08-238568},
pmid = {20086249}
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@article{lin65728,
title = {Dose response of attenuated Bordetella pertussis BPZE1-induced protection in mice.},
author = {Mielcarek N, Debrie AS, Mahieux S, Locht C.},
journal = {Clin Vaccine Immunol},
year = {2010},
doi = {10.1128/cvi.00322-09},
pmid = {20107007}
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@article{lin65778,
title = {Combined real-time PCR and rpoB gene pyrosequencing for rapid identification of Mycobacterium tuberculosis and determination of rifampin resistance directly in clinical specimens.},
author = {Halse TA, Edwards J, Cunningham PL, Wolfgang WJ, Dumas NB, Escuyer VE, Musser KA.},
journal = {J Clin Microbiol},
year = {2010},
doi = {10.1128/jcm.02149-09},
pmid = {20107097}
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@article{lin65441,
title = {Acellular pertussis vaccination facilitates Bordetella parapertussis infection in a rodent model of bordetellosis.},
author = {Long GH, Karanikas AT, Harvill ET, Read AF, Hudson PJ.},
journal = {Proc Biol Sci},
year = {2010},
doi = {10.1098/rspb.2010.0010},
pmid = {20200027}
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@article{lin65684,
title = {Mosaic structure of intragenic repetitive elements in histone H1-like protein Hc2 varies within serovars of Chlamydia trachomatis.},
author = {Klint M, Thollesson M, Bongcam-Rudloff E, Birkelund S, Nilsson A, Herrmann B.},
journal = {BMC Microbiol},
year = {2010},
doi = {10.1186/1471-2180-10-81},
pmid = {20236532}
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@article{lin65757,
title = {Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers.},
author = {Yang B, Peng Y, Leung HC, Yiu SM, Chen JC, Chin FY.},
journal = {BMC Bioinformatics},
year = {2010},
doi = {10.1186/1471-2105-11-s2-s5},
pmid = {20406503}
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title = {T- and B-cell-mediated protection induced by novel, live attenuated pertussis vaccine in mice. Cross protection against parapertussis.},
author = {Feunou PF, Bertout J, Locht C.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0010178},
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title = {Protective effects of vaccines against Bordetella parapertussis in a mouse intranasal challenge model.},
author = {Komatsu E, Yamaguchi F, Eguchi M, Watanabe M.},
journal = {Vaccine},
year = {2010},
doi = {10.1016/j.vaccine.2010.04.053},
pmid = {20438876}
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@article{lin65740,
title = {The structure of PhaZ7 at atomic (1.2 A) resolution reveals details of the active site and suggests a substrate-binding mode.},
author = {Wakadkar S, Hermawan S, Jendrossek D, Papageorgiou AC.},
journal = {Acta Crystallogr Sect F Struct Biol Cryst Commun},
year = {2010},
doi = {10.1107/s174430911001434x},
pmid = {20516591}
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@article{lin65815,
title = {The early stage of bacterial genome-reductive evolution in the host.},
author = {Song H, Hwang J, Yi H, Ulrich RL, Yu Y, Nierman WC, Kim HS.},
journal = {PLoS Pathog},
year = {2010},
doi = {10.1371/journal.ppat.1000922},
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@article{lin65723,
title = {Epidemiology and clinical presentations of the four human coronaviruses 229E, HKU1, NL63, and OC43 detected over 3 years using a novel multiplex real-time PCR method.},
author = {Gaunt ER, Hardie A, Claas EC, Simmonds P, Templeton KE.},
journal = {J Clin Microbiol},
year = {2010},
doi = {10.1128/jcm.00636-10},
pmid = {20554810}
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@article{lin65813,
title = {Origins and diversification of a complex signal transduction system in prokaryotes.},
author = {Wuichet K, Zhulin IB.},
journal = {Sci Signal},
year = {2010},
doi = {10.1126/scisignal.2000724},
pmid = {20587806}
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@article{lin65644,
title = {Antigenic Variation among Bordetella: Bordetella bronchiseptica strain MO149 expresses a novel o chain that is poorly immunogenic.},
author = {Vinogradov E, King JD, Pathak AK, Harvill ET, Preston A.},
journal = {J Biol Chem},
year = {2010},
doi = {10.1074/jbc.m110.115121},
pmid = {20592026}
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@article{lin65276,
title = {Bordetella parapertussis isolates not expressing pertactin circulating in France.},
author = {Bouchez V, Brun D, Dore G, Njamkepo E, Guiso N.},
journal = {Clin Microbiol Infect},
year = {2011},
doi = {10.1111/j.1469-0691.2010.03303.x},
pmid = {20636430}
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@article{lin65560,
title = {Structure of the N-terminal fragment of Escherichia coli Lon protease.},
author = {Li M, Gustchina A, Rasulova FS, Melnikov EE, Maurizi MR, Rotanova TV, Dauter Z, Wlodawer A.},
journal = {Acta Crystallogr D Biol Crystallogr},
year = {2010},
doi = {10.1107/s0907444910019554},
pmid = {20693685}
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@article{lin65302,
title = {Triplex real-time PCR assay for detection and differentiation of Bordetella pertussis and Bordetella parapertussis.},
author = {Xu Y, Xu Y, Hou Q, Yang R, Zhang S.},
journal = {APMIS},
year = {2010},
doi = {10.1111/j.1600-0463.2010.02644.x},
pmid = {20718721}
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@article{lin65866,
title = {A blueprint of ectoine metabolism from the genome of the industrial producer Halomonas elongata DSM 2581 T.},
author = {Schwibbert K, Marin-Sanguino A, Bagyan I, Heidrich G, Lentzen G, Seitz H, Rampp M, Schuster SC, Klenk HP, Pfeiffer F, Oesterhelt D, Kunte HJ.},
journal = {Environ Microbiol},
year = {2011},
doi = {10.1111/j.1462-2920.2010.02336.x},
pmid = {20849449}
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@article{lin65314,
title = {Monitoring of Bordetella isolates circulating in Saint Petersburg, Russia between 2001 and 2009.},
author = {Kurova N, Njamkepo E, Brun D, Tseneva G, Guiso N.},
journal = {Res Microbiol},
year = {2010},
doi = {10.1016/j.resmic.2010.09.013},
pmid = {20870020}
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@article{lin65325,
title = {Sensitivity and specificity of the World Health Organization pertussis clinical case definition.},
author = {Ghanaie RM, Karimi A, Sadeghi H, Esteghamti A, Falah F, Armin S, Fahimzad A, Shamshiri A, Kahbazi M, Shiva F.},
journal = {Int J Infect Dis},
year = {2010},
doi = {10.1016/j.ijid.2010.07.005},
pmid = {20951620}
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@article{lin65663,
title = {Interleukin-1 receptor signaling is required to overcome the effects of pertussis toxin and for efficient infection- or vaccination-induced immunity against Bordetella pertussis.},
author = {Zhang X, Hester SE, Kennett MJ, Karanikas AT, Bendor L, Place DE, Harvill ET.},
journal = {Infect Immun},
year = {2011},
doi = {10.1128/iai.00590-10},
pmid = {20974829}
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@article{lin65809,
title = {Cost-effectiveness of adolescent pertussis vaccination for the Netherlands: using an individual-based dynamic model.},
author = {de Vries R, Kretzschmar M, Schellekens JF, Versteegh FG, Westra TA, Roord JJ, Postma MJ.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0013392},
pmid = {20976213}
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@article{lin65719,
title = {Comparative genomics of prevaccination and modern Bordetella pertussis strains.},
author = {Bart MJ, van Gent M, van der Heide HG, Boekhorst J, Hermans P, Parkhill J, Mooi FR.},
journal = {BMC Genomics},
year = {2010},
doi = {10.1186/1471-2164-11-627},
pmid = {21070624}
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@article{lin65779,
title = {Evolution of the Kdo2-lipid A biosynthesis in bacteria.},
author = {Opiyo SO, Pardy RL, Moriyama H, Moriyama EN.},
journal = {BMC Evol Biol},
year = {2010},
doi = {10.1186/1471-2148-10-362},
pmid = {21106097}
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@article{lin65808,
title = {Effector prediction in host-pathogen interaction based on a Markov model of a ubiquitous EPIYA motif.},
author = {Xu S, Zhang C, Miao Y, Gao J, Xu D.},
journal = {BMC Genomics},
year = {2010},
doi = {10.1186/1471-2164-11-s3-s1},
pmid = {21143776}
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@article{lin65761,
title = {The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures.},
author = {Panek J, Krasny L, Bobek J, Jezkova E, Korelusova J, Vohradsky J.},
journal = {Nucleic Acids Res},
year = {2011},
doi = {10.1093/nar/gkq1186},
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@article{lin65645,
title = {Pertussis serodiagnosis in Belgium from 1990 to 2009.},
author = {Vincent M, Rodeghiero C, Eylenbosch R, Mans Y, Swalus-Steenhouwer J, Pierard D, Huygen K, Vanhoof R.},
journal = {Clin Vaccine Immunol},
year = {2011},
doi = {10.1128/cvi.00003-11},
pmid = {21346057}
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@article{lin65349,
title = {Function-specific accelerations in rates of sequence evolution suggest predictable epistatic responses to reduced effective population size.},
author = {Warnecke T, Rocha EP.},
journal = {Mol Biol Evol},
year = {2011},
doi = {10.1093/molbev/msr054},
pmid = {21349981}
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@article{lin65664,
title = {Modified real-time PCR for detecting, differentiating, and quantifying Ureaplasma urealyticum and Ureaplasma parvum.},
author = {Vancutsem E, Soetens O, Breugelmans M, Foulon W, Naessens A.},
journal = {J Mol Diagn},
year = {2011},
doi = {10.1016/j.jmoldx.2010.10.007},
pmid = {21354056}
}
@article{lin65303,
title = {Real-time PCR-based detection of Bordetella pertussis and Bordetella parapertussis in an Irish paediatric population.},
author = {Grogan JA, Logan C, O'Leary J, Rush R, O'Sullivan N.},
journal = {J Med Microbiol},
year = {2011},
doi = {10.1099/jmm.0.030049-0},
pmid = {21393459}
}
@article{lin65643,
title = {The Bordetella avium BAV1965-1962 fimbrial locus is regulated by temperature and produces fimbriae involved in adherence to turkey tracheal tissue.},
author = {Loker SB, Temple LM, Preston A.},
journal = {Infect Immun},
year = {2011},
doi = {10.1128/iai.01169-10},
pmid = {21464081}
}
@article{lin65801,
title = {Application of TaqMan low-density arrays for simultaneous detection of multiple respiratory pathogens.},
author = {Kodani M, Yang G, Conklin LM, Travis TC, Whitney CG, Anderson LJ, Schrag SJ, Taylor TH, Beall BW, Breiman RF, Feikin DR, Njenga MK, Mayer LW, Oberste MS, Tondella ML, Winchell JM, Lindstrom SL, Erdman DD, Fields BS.},
journal = {J Clin Microbiol},
year = {2011},
doi = {10.1128/jcm.02270-10},
pmid = {21471348}
}
@article{lin65523,
title = {Detection of small RNAs in Bordetella pertussis and identification of a novel repeated genetic element.},
author = {Hot D, Slupek S, Wulbrecht B, D'Hondt A, Hubans C, Antoine R, Locht C, Lemoine Y.},
journal = {BMC Genomics},
year = {2011},
doi = {10.1186/1471-2164-12-207},
pmid = {21524285}
}
@article{lin65782,
title = {Bordetella pertussis infection exacerbates influenza virus infection through pertussis toxin-mediated suppression of innate immunity.},
author = {Ayala VI, Teijaro JR, Farber DL, Dorsey SG, Carbonetti NH.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0019016},
pmid = {21533103}
}
@article{lin65280,
title = {Whooping cough in Pakistan: Bordetella pertussis vs Bordetella parapertussis in 2005-2009.},
author = {Bokhari H, Said F, Syed MA, Mughal A, Kazi YF, Heuvelman K, Mooi FR.},
journal = {Scand J Infect Dis},
year = {2011},
doi = {10.3109/00365548.2011.577804},
pmid = {21563881}
}
@article{lin65821,
title = {A novel sensor kinase is required for Bordetella bronchiseptica to colonize the lower respiratory tract.},
author = {Kaut CS, Duncan MD, Kim JY, Maclaren JJ, Cochran KT, Julio SM.},
journal = {Infect Immun},
year = {2011},
doi = {10.1128/iai.00005-11},
pmid = {21606184}
}
@article{lin65278,
title = {Effectiveness of the whole-cell pertussis vaccine produced in Poland against different Bordetella parapertussis isolates in the mouse intranasal challenge model.},
author = {Zawadka M, Polak M, Rabczenko D, Mosiej E, Augustynowicz E, Lutynska A.},
journal = {Vaccine},
year = {2011},
doi = {10.1016/j.vaccine.2011.05.053},
pmid = {21641954}
}
@article{lin65459,
title = {Enhancement of Bordetella parapertussis infection by Bordetella pertussis in mixed infection of the respiratory tract.},
author = {Worthington ZE, Van Rooijen N, Carbonetti NH.},
journal = {FEMS Immunol Med Microbiol},
year = {2011},
doi = {10.1111/j.1574-695x.2011.00836.x},
pmid = {21707780}
}
@article{lin65802,
title = {Virulence determinants, drug resistance and mobile genetic elements of Laribacter hongkongensis: a genome-wide analysis.},
author = {Lau SK, Wong GK, Tsang AK, Teng JL, Fan RY, Tse H, Yuen KY, Woo PC.},
journal = {Cell Biosci},
year = {2011},
doi = {10.1186/2045-3701-1-17},
pmid = {21711902}
}
@article{lin65800,
title = {General metabolism of Laribacter hongkongensis: a genome-wide analysis.},
author = {Curreem SO, Teng JL, Tse H, Yuen KY, Lau SK, Woo PC.},
journal = {Cell Biosci},
year = {2011},
doi = {10.1186/2045-3701-1-16},
pmid = {21711917}
}
@article{lin65840,
title = {Transcriptional profiling of the iron starvation response in Bordetella pertussis provides new insights into siderophore utilization and virulence gene expression.},
author = {Brickman TJ, Cummings CA, Liew SY, Relman DA, Armstrong SK.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.05136-11},
pmid = {21742863}
}
@article{lin65850,
title = {Genomes and characterization of phages Bcep22 and BcepIL02, founders of a novel phage type in Burkholderia cenocepacia.},
author = {Gill JJ, Summer EJ, Russell WK, Cologna SM, Carlile TM, Fuller AC, Kitsopoulos K, Mebane LM, Parkinson BN, Sullivan D, Carmody LA, Gonzalez CF, LiPuma JJ, Young R.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.05287-11},
pmid = {21804006}
}
@article{lin65687,
title = {Classification of dendritic cell phenotypes from gene expression data.},
author = {Tuana G, Volpato V, Ricciardi-Castagnoli P, Zolezzi F, Stella F, Foti M.},
journal = {BMC Immunol},
year = {2011},
doi = {10.1186/1471-2172-12-50},
pmid = {21875438}
}
@article{lin65270,
title = {Rapid detection of Bordetella pertussis and Bordetella parapertussis in clinical and molecular proficiency panel specimens with a novel intercalating dye-based PCR assay.},
author = {Slinger R, Moldovan I, Hyde L, Chan F.},
journal = {Scand J Infect Dis},
year = {2011},
doi = {10.3109/00365548.2011.608083},
pmid = {21916776}
}
@article{lin65760,
title = {Pseudomonas aeruginosa Psl polysaccharide reduces neutrophil phagocytosis and the oxidative response by limiting complement-mediated opsonization.},
author = {Mishra M, Byrd MS, Sergeant S, Azad AK, Parsek MR, McPhail L, Schlesinger LS, Wozniak DJ.},
journal = {Cell Microbiol},
year = {2012},
doi = {10.1111/j.1462-5822.2011.01704.x},
pmid = {21951860}
}
@article{lin65791,
title = {BpsR modulates Bordetella biofilm formation by negatively regulating the expression of the Bps polysaccharide.},
author = {Conover MS, Redfern CJ, Ganguly T, Sukumar N, Sloan G, Mishra M, Deora R.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.06020-11},
pmid = {22056934}
}
@article{lin65281,
title = {Molecular typing of Bordetella parapertussis isolates circulating in Pakistan.},
author = {Bokhari H, Said F, Syed MA, Mughal A, Kazi YF, Kallonen T, He Q, King AJ, Heuvelman K, Mooi FR.},
journal = {FEMS Immunol Med Microbiol},
year = {2011},
doi = {10.1111/j.1574-695x.2011.00861.x},
pmid = {22092564}
}
@article{lin65772,
title = {Structure-based vaccines provide protection in a mouse model of ehrlichiosis.},
author = {Thomas S, Thirumalapura NR, Crocquet-Valdes PA, Luxon BA, Walker DH.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0027981},
pmid = {22114733}
}
@article{lin65257,
title = {Patterns of Bordetella parapertussis respiratory illnesses: 2008-2010.},
author = {Cherry JD, Seaton BL.},
journal = {Clin Infect Dis},
year = {2012},
doi = {10.1093/cid/cir860},
pmid = {22156857}
}
@article{lin65771,
title = {Bacterial degradation of tert-amyl alcohol proceeds via hemiterpene 2-methyl-3-buten-2-ol by employing the tertiary alcohol desaturase function of the Rieske nonheme mononuclear iron oxygenase MdpJ.},
author = {Schuster J, Schafer F, Hubler N, Brandt A, Rosell M, Hartig C, Harms H, Muller RH, Rohwerder T.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.06384-11},
pmid = {22194447}
}
@article{lin65855,
title = {Network model of immune responses reveals key effectors to single and co-infection dynamics by a respiratory bacterium and a gastrointestinal helminth.},
author = {Thakar J, Pathak AK, Murphy L, Albert R, Cattadori IM.},
journal = {PLoS Comput Biol},
year = {2012},
doi = {10.1371/journal.pcbi.1002345},
pmid = {22253585}
}
@article{lin65783,
title = {Conserved signal peptide recognition systems across the prokaryotic domains.},
author = {Coulthurst SJ, Dawson A, Hunter WN, Sargent F.},
journal = {Biochemistry},
year = {2012},
doi = {10.1021/bi201852d},
pmid = {22289056}
}
@article{lin65696,
title = {Prevalence and genetic characterization of pertactin-deficient Bordetella pertussis in Japan.},
author = {Otsuka N, Han HJ, Toyoizumi-Ajisaka H, Nakamura Y, Arakawa Y, Shibayama K, Kamachi K.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0031985},
pmid = {22348138}
}
@article{lin65472,
title = {First report of infectious pericarditis due to Bordetella holmesii in an adult patient with malignant lymphoma.},
author = {Nei T, Hyodo H, Sonobe K, Dan K, Saito R.},
journal = {J Clin Microbiol},
year = {2012},
doi = {10.1128/jcm.06772-11},
pmid = {22378902}
}
@article{lin65639,
title = {Development of a novel genus-specific real-time PCR assay for detection and differentiation of Bartonella species and genotypes.},
author = {Diaz MH, Bai Y, Malania L, Winchell JM, Kosoy MY.},
journal = {J Clin Microbiol},
year = {2012},
doi = {10.1128/jcm.06621-11},
pmid = {22378904}
}
@article{lin65768,
title = {Membrane topology and intracellular processing of cyclin M2 (CNNM2).},
author = {de Baaij JH, Stuiver M, Meij IC, Lainez S, Kopplin K, Venselaar H, Muller D, Bindels RJ, Hoenderop JG.},
journal = {J Biol Chem},
year = {2012},
doi = {10.1074/jbc.m112.342204},
pmid = {22399287}
}
@article{lin65765,
title = {Structure and activity of the Pseudomonas aeruginosa hotdog-fold thioesterases PA5202 and PA2801.},
author = {Gonzalez CF, Tchigvintsev A, Brown G, Flick R, Evdokimova E, Xu X, Osipiuk J, Cuff ME, Lynch S, Joachimiak A, Savchenko A, Yakunin AF.},
journal = {Biochem J},
year = {2012},
doi = {10.1042/bj20112032},
pmid = {22439787}
}
@article{lin65781,
title = {Involvement of multiple distinct Bordetella receptor proteins in the utilization of iron liberated from transferrin by host catecholamine stress hormones.},
author = {Armstrong SK, Brickman TJ, Suhadolc RJ.},
journal = {Mol Microbiol},
year = {2012},
doi = {10.1111/j.1365-2958.2012.08032.x},
pmid = {22458330}
}
@article{lin65843,
title = {Contribution of Bordetella filamentous hemagglutinin and adenylate cyclase toxin to suppression and evasion of interleukin-17-mediated inflammation.},
author = {Henderson MW, Inatsuka CS, Sheets AJ, Williams CL, Benaron DJ, Donato GM, Gray MC, Hewlett EL, Cotter PA.},
journal = {Infect Immun},
year = {2012},
doi = {10.1128/iai.00148-12},
pmid = {22473603}
}
@article{lin65845,
title = {A new family of membrane electron transporters and its substrates, including a new cell envelope peroxiredoxin, reveal a broadened reductive capacity of the oxidative bacterial cell envelope.},
author = {Cho SH, Parsonage D, Thurston C, Dutton RJ, Poole LB, Collet JF, Beckwith J.},
journal = {mBio},
year = {2012},
doi = {10.1128/mbio.00291-11},
pmid = {22493033}
}
@article{lin65806,
title = {The Bordetella pertussis model of exquisite gene control by the global transcription factor BvgA.},
author = {Decker KB, James TD, Stibitz S, Hinton DM.},
journal = {Microbiology (Reading)},
year = {2012},
doi = {10.1099/mic.0.058941-0},
pmid = {22628479}
}
@article{lin65525,
title = {Seroepidemiology of Bordetella pertussis infections in the twin cities of Pakistan.},
author = {Syed MA, Said F, Bukhari SH.},
journal = {N Am J Med Sci},
year = {2009},
doi = {10.4297/najms.2009.7353},
pmid = {22666723}
}
@article{lin65267,
title = {Evolution of French Bordetella pertussis and Bordetella parapertussis isolates: increase of Bordetellae not expressing pertactin.},
author = {Hegerle N, Paris AS, Brun D, Dore G, Njamkepo E, Guillot S, Guiso N.},
journal = {Clin Microbiol Infect},
year = {2012},
doi = {10.1111/j.1469-0691.2012.03925.x},
pmid = {22717007}
}
@article{lin65322,
title = {Dual mechanism of protection by live attenuated Bordetella pertussis BPZE1 against Bordetella bronchiseptica in mice.},
author = {Kammoun H, Feunou PF, Foligne B, Debrie AS, Raze D, Mielcarek N, Locht C.},
journal = {Vaccine},
year = {2012},
doi = {10.1016/j.vaccine.2012.07.005},
pmid = {22814407}
}
@article{lin65776,
title = {Validation of a multiplex reverse transcriptase PCR ELISA for the detection of 19 respiratory tract pathogens.},
author = {Puppe W, Weigl J, Grondahl B, Knuf M, Rockahr S, von Bismarck P, Aron G, Niesters HG, Osterhaus AD, Schmitt HJ.},
journal = {Infection},
year = {2013},
doi = {10.1007/s15010-012-0298-6},
pmid = {22847627}
}
@article{lin65822,
title = {sigE facilitates the adaptation of Bordetella bronchiseptica to stress conditions and lethal infection in immunocompromised mice.},
author = {Barchinger SE, Zhang X, Hester SE, Rodriguez ME, Harvill ET, Ades SE.},
journal = {BMC Microbiol},
year = {2012},
doi = {10.1186/1471-2180-12-179},
pmid = {22897969}
}
@article{lin65673,
title = {A bioinformatic strategy for the detection, classification and analysis of bacterial autotransporters.},
author = {Celik N, Webb CT, Leyton DL, Holt KE, Heinz E, Gorrell R, Kwok T, Naderer T, Strugnell RA, Speed TP, Teasdale RD, Likic VA, Lithgow T.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0043245},
pmid = {22905239}
}
@article{lin65759,
title = {Iron and pH-responsive FtrABCD ferrous iron utilization system of Bordetella species.},
author = {Brickman TJ, Armstrong SK.},
journal = {Mol Microbiol},
year = {2012},
doi = {10.1111/mmi.12003},
pmid = {22924881}
}
@article{lin65731,
title = {Solitary restriction endonucleases in prokaryotic genomes.},
author = {Ershova AS, Karyagina AS, Vasiliev MO, Lyashchuk AM, Lunin VG, Spirin SA, Alexeevski AV.},
journal = {Nucleic Acids Res},
year = {2012},
doi = {10.1093/nar/gks853},
pmid = {22965118}
}
@article{lin65439,
title = {Bordetella parapertussis survives the innate interaction with human neutrophils by impairing bactericidal trafficking inside the cell through a lipid raft-dependent mechanism mediated by the lipopolysaccharide O antigen.},
author = {Gorgojo J, Lamberti Y, Valdez H, Harvill ET, Rodriguez ME.},
journal = {Infect Immun},
year = {2012},
doi = {10.1128/iai.00662-12},
pmid = {23027528}
}
@article{lin65583,
title = {The Aspergillus fumigatus dihydroxyacid dehydratase Ilv3A/IlvC is required for full virulence.},
author = {Oliver JD, Kaye SJ, Tuckwell D, Johns AE, Macdonald DA, Livermore J, Warn PA, Birch M, Bromley MJ.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0043559},
pmid = {23028460}
}
@article{lin65796,
title = {Small mutations in Bordetella pertussis are associated with selective sweeps.},
author = {van Gent M, Bart MJ, van der Heide HG, Heuvelman KJ, Mooi FR.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0046407},
pmid = {23029513}
}
@article{lin65655,
title = {Identification of a CO2 responsive regulon in Bordetella.},
author = {Hester SE, Lui M, Nicholson T, Nowacki D, Harvill ET.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0047635},
pmid = {23112828}
}
@article{lin65755,
title = {Resolving pertussis immunity and vaccine effectiveness using incidence time series.},
author = {Lavine JS, Rohani P.},
journal = {Expert Rev Vaccines},
year = {2012},
doi = {10.1586/erv.12.109},
pmid = {23249232}
}
@article{lin65258,
title = {Re-emergence of pertussis: what are the solutions?},
author = {Libster R, Edwards KM.},
journal = {Expert Rev Vaccines},
year = {2012},
doi = {10.1586/erv.12.118},
pmid = {23249233}
}
@article{lin65590,
title = {Solution structure of the oncogenic MIEN1 protein reveals a thioredoxin-like fold with a redox-active motif.},
author = {Hsu CH, Shen TL, Chang CF, Chang YY, Huang LY.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0052292},
pmid = {23284973}
}
@article{lin65242,
title = {In-vitro and in-vivo analysis of the production of the Bordetella type three secretion system effector A in Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.},
author = {Hegerle N, Rayat L, Dore G, Zidane N, Bedouelle H, Guiso N.},
journal = {Microbes Infect},
year = {2013},
doi = {10.1016/j.micinf.2013.02.006},
pmid = {23470234}
}
@article{lin65273,
title = {[Seroprevalence of antibodies against lipopolysaccharides of Bordetella parapertussis in patients with prolonged caught in Poland].},
author = {Rokosz N, Smietanska K, Rastawicki W, Jagielski M.},
journal = {Med Dosw Mikrobiol},
year = {2012},
pmid = {23484419}
}
@article{lin65860,
title = {Predicting the proteins of Angomonas deanei, Strigomonas culicis and their respective endosymbionts reveals new aspects of the trypanosomatidae family.},
author = {Motta MC, Martins AC, de Souza SS, Catta-Preta CM, Silva R, Klein CC, de Almeida LG, de Lima Cunha O, Ciapina LP, Brocchi M, Colabardini AC, de Araujo Lima B, Machado CR, de Almeida Soares CM, Probst CM, de Menezes CB, Thompson CE, Bartholomeu DC, Gradia DF, Pavoni DP, Grisard EC, Fantinatti-Garboggini F, Marchini FK, Rodrigues-Luiz GF, Wagner G, Goldman GH, Fietto JL, Elias MC, Goldman MH, Sagot MF, Pereira M, Stoco PH, de Mendonca-Neto RP, Teixeira SM, Maciel TE, de Oliveira Mendes TA, Urmenyi TP, de Souza W, Schenkman S, de Vasconcelos AT.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0060209},
pmid = {23560078}
}
@article{lin65721,
title = {Exclusive use of trans-editing domains prevents proline mistranslation.},
author = {Vargas-Rodriguez O, Musier-Forsyth K.},
journal = {J Biol Chem},
year = {2013},
doi = {10.1074/jbc.m113.467795},
pmid = {23564458}
}
@article{lin65307,
title = {Evaluation of PCR methods for the diagnosis of pertussis by the European surveillance network for vaccine-preventable diseases (EUVAC.NET).},
author = {Dalby T, Fry NK, Krogfelt KA, Jensen JS, He Q, pertussis EQA participants.},
journal = {Eur J Clin Microbiol Infect Dis},
year = {2013},
doi = {10.1007/s10096-013-1874-0},
pmid = {23609510}
}
@article{lin65745,
title = {Using a bayesian latent class model to evaluate the utility of investigating persons with negative polymerase chain reaction results for pertussis.},
author = {Tarr GA, Eickhoff JC, Koepke R, Hopfensperger DJ, Davis JP, Conway JH.},
journal = {Am J Epidemiol},
year = {2013},
doi = {10.1093/aje/kws465},
pmid = {23735308}
}
@article{lin65858,
title = {Genome implosion elicits host-confinement in Alcaligenaceae: evidence from the comparative genomics of Tetrathiobacter kashmirensis, a pathogen in the making.},
author = {Ghosh W, Alam M, Roy C, Pyne P, George A, Chakraborty R, Majumder S, Agarwal A, Chakraborty S, Majumdar S, Gupta SK.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0064856},
pmid = {23741407}
}
@article{lin65763,
title = {Role of Bordetella pertussis RseA in the cell envelope stress response and adenylate cyclase toxin release.},
author = {Hanawa T, Yonezawa H, Kawakami H, Kamiya S, Armstrong SK.},
journal = {Pathog Dis},
year = {2013},
doi = {10.1111/2049-632x.12061},
pmid = {23821542}
}
@article{lin65224,
title = {Bordetella parapertussis bacteremia: two case reports.},
author = {Wallihan R, Selvarangan R, Marcon M, Koranyi K, Spicer K, Jackson MA.},
journal = {Pediatr Infect Dis J},
year = {2013},
doi = {10.1097/inf.0b013e31828d2ca4},
pmid = {23838781}
}
@article{lin65744,
title = {Characterization of the PAS domain in the sensor-kinase BvgS: mechanical role in signal transmission.},
author = {Dupre E, Wohlkonig A, Herrou J, Locht C, Jacob-Dubuisson F, Antoine R.},
journal = {BMC Microbiol},
year = {2013},
doi = {10.1186/1471-2180-13-172},
pmid = {23883404}
}
@article{lin65741,
title = {Novel tripartite aromatic acid transporter essential for terephthalate uptake in Comamonas sp. strain E6.},
author = {Hosaka M, Kamimura N, Toribami S, Mori K, Kasai D, Fukuda M, Masai E.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.01600-13},
pmid = {23913423}
}
@article{lin65677,
title = {The TARGET cohort study protocol: a prospective primary care cohort study to derive and validate a clinical prediction rule to improve the targeting of antibiotics in children with respiratory tract illnesses.},
author = {Redmond NM, Davies R, Christensen H, Blair PS, Lovering AM, Leeming JP, Muir P, Vipond B, Thornton H, Fletcher M, Delaney B, Little P, Thompson M, Peters TJ, Hay AD, TARGET team.},
journal = {BMC Health Serv Res},
year = {2013},
doi = {10.1186/1472-6963-13-322},
pmid = {23958109}
}
@article{lin65223,
title = {Outer membrane vesicles derived from Bordetella parapertussis as an acellular vaccine against Bordetella parapertussis and Bordetella pertussis infection.},
author = {Bottero D, Gaillard ME, Errea A, Moreno G, Zurita E, Pianciola L, Rumbo M, Hozbor D.},
journal = {Vaccine},
year = {2013},
doi = {10.1016/j.vaccine.2013.08.059},
pmid = {24012570}
}
@article{lin65247,
title = {[Diagnosis of whooping cough by serology and real-time PCR].},
author = {Mikesova R, Stiborova I, Richter J, Rajnohova Dobiasova L, Kral V.},
journal = {Epidemiol Mikrobiol Imunol},
year = {2013},
pmid = {24116698}
}
@article{lin65317,
title = {Complete Bordetella avium, Bordetella hinzii and Bordetella trematum lipid A structures and genomic sequence analyses of the loci involved in their modifications.},
author = {Novikov A, Shah NR, AlBitar-Nehme S, Basheer SM, Trento I, Tirsoaga A, Moksa M, Hirst M, Perry MB, Hamidi AE, Fernandez RC, Caroff M.},
journal = {Innate Immun},
year = {2014},
doi = {10.1177/1753425913506950},
pmid = {24127384}
}
@article{lin65430,
title = {The 2009 pandemic influenza A(H1N1) coincides with changes in the epidemiology of other viral pathogens causing acute respiratory tract infections in children.},
author = {Grondahl B, Ankermann T, von Bismarck P, Rockahr S, Kowalzik F, Gehring S, Meyer C, Knuf M, Puppe W.},
journal = {Infection},
year = {2014},
doi = {10.1007/s15010-013-0545-5},
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title = {Inhibition controls for qualitative real-time PCR assays: are they necessary for all specimen matrices?},
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title = {Implementing hospital-based surveillance for severe acute respiratory infections caused by influenza and other respiratory pathogens in New Zealand.},
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title = {Nucleotide binding triggers a conformational change of the CBS module of the magnesium transporter CNNM2 from a twisted towards a flat structure.},
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title = {Bordetella parapertussis survives inside human macrophages in lipid raft-enriched phagosomes.},
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journal = {Infect Immun},
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journal = {J Clin Microbiol},
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title = {Bordetella parapertussis PagP mediates the addition of two palmitates to the lipopolysaccharide lipid A.},
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journal = {J Bacteriol},
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title = {Seroprevalence study of B. pertussis infection in health care workers in Catalonia, Spain.},
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title = {The Bordetella adenylate cyclase repeat-in-toxin (RTX) domain is immunodominant and elicits neutralizing antibodies.},
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title = {Septic arthritis and osteomyelitis due to Bordetella petrii.},
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journal = {J Clin Microbiol},
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title = {Bordetella parapertussis outbreak in Bisham, Pakistan in 2009-2010: fallout of the 9/11 syndrome.},
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journal = {Epidemiol Infect},
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title = {Novel, host-restricted genotypes of Bordetella bronchiseptica associated with phocine respiratory tract isolates.},
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title = {Detection of enteroviruses and parechoviruses by a multiplex real-time RT-PCR assay.},
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journal = {Mol Cell Probes},
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title = {Testing implications of varying targets for Bordetella pertussis: comparison of the FilmArray Respiratory Panel and the Focus B. pertussis PCR assay.},
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title = {Bacteremia Caused by Kerstersia gyiorum.},
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title = {Multiplex real-time PCR assay for detection and differentiation of Bordetella pertussis and Bordetella parapertussis.},
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title = {Homologous trans-editing factors with broad tRNA specificity prevent mistranslation caused by serine/threonine misactivation.},
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title = {The burden of pertussis in low- and middle-income countries since the inception of the Expanded Programme on Immunization (EPI) in 1974: a systematic review protocol.},
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title = {Development of two real-time multiplex PCR assays for the detection and quantification of eight key bacterial pathogens in lower respiratory tract infections.},
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title = {Cooperative roles for fimbria and filamentous hemagglutinin in Bordetella adherence and immune modulation.},
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journal = {mBio},
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title = {Widespread Bordetella parapertussis Infections-Wisconsin, 2011-2012: Clinical and Epidemiologic Features and Antibiotic Use for Treatment and Prevention.},
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title = {Host Specificity of Ovine Bordetella parapertussis and the Role of Complement.},
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title = {Structure activity characterization of Bordetella petrii lipid A, from environment to human isolates.},
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title = {Correlation of Real Time PCR Cycle Threshold Cut-Off with Bordetella pertussis Clinical Severity.},
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title = {Characterization of two Achromobacter xylosoxidans isolates from patients with pertussis-like symptoms.},
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journal = {Asian Pac J Trop Med},
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title = {The protein BpsB is a poly-beta-1,6-N-acetyl-D-glucosamine deacetylase required for biofilm formation in Bordetella bronchiseptica.},
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journal = {J Biol Chem},
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title = {Direct Detection of Erythromycin-Resistant Bordetella pertussis in Clinical Specimens by PCR.},
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journal = {J Clin Microbiol},
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title = {A Case of Bordetella brochiseptica at a Military Medical Facility in Hawai'i: Phenotypic and Molecular Testing of an Uncommon Human Pathogen.},
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title = {Genome-wide association study identifies SNPs in the MHC class II loci that are associated with self-reported history of whooping cough.},
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journal = {Hum Mol Genet},
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title = {Overproduction, crystallization and X-ray diffraction data analysis of ectoine synthase from the cold-adapted marine bacterium Sphingopyxis alaskensis.},
author = {Kobus S, Widderich N, Hoeppner A, Bremer E, Smits SH.},
journal = {Acta Crystallogr F Struct Biol Commun},
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title = {The waaL gene mutation compromised the inhabitation of Enterobacter sp. Ag1 in the mosquito gut environment.},
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journal = {Parasit Vectors},
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title = {Interspecies variations in Bordetella catecholamine receptor gene regulation and function.},
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journal = {Infect Immun},
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title = {Diversity of secretion systems associated with virulence characteristics of the classical bordetellae.},
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journal = {Microbiology (Reading)},
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title = {Evaluation of the Bruker MALDI Biotyper for Identification of Fastidious Gram-Negative Rods.},
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title = {Uncovering the Transmembrane Metal Binding Site of the Novel Bacterial Major Facilitator Superfamily-Type Copper Importer CcoA.},
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journal = {mBio},
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doi = {10.1128/mbio.01981-15},
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title = {Rapid PCR Detection of Mycoplasma hominis, Ureaplasma urealyticum, and Ureaplasma parvum.},
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@article{lin65419,
title = {When polymerase chain reaction does not help: cytomegalovirus pneumonitis associated with very low or undetectable viral load in both blood and bronchoalveolar lavage samples after lung transplantation.},
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title = {Incidence and Diagnosis of Pertussis in South African Children Hospitalized With Lower Respiratory Tract Infection.},
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title = {Variability of the Sheep Lung Microbiota.},
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journal = {Appl Environ Microbiol},
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title = {Antimicrobial-Loaded Bone Cement Does Not Negatively Influence Sonicate Fluid Culture Positivity for Diagnosis of Prosthetic Joint Infection.},
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title = {Laboratory-based surveillance of pertussis using multitarget real-time PCR in Japan: evidence for Bordetella pertussis infection in preteens and teens.},
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title = {Comparison of molecular detection methods for pertussis in children during a state-wide outbreak.},
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title = {Shattering a myth - Whooping cough susceptible to antibiotics.},
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journal = {Pak J Pharm Sci},
year = {2016},
pmid = {27166543}
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title = {Bordetella pertussis.},
author = {Nieves DJ, Heininger U.},
journal = {Microbiol Spectr},
year = {2016},
doi = {10.1128/microbiolspec.ei10-0008-2015},
pmid = {27337481}
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title = {BipA Is Associated with Preventing Autoagglutination and Promoting Biofilm Formation in Bordetella holmesii.},
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title = {Epidemiology and economic burden of measles, mumps, pertussis, and varicella in Germany: a systematic review.},
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journal = {Int J Public Health},
year = {2016},
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pmid = {27488917}
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title = {Development of vaccines against pertussis caused by Bordetella holmesii using a mouse intranasal challenge model.},
author = {Saito M, Odanaka K, Otsuka N, Kamachi K, Watanabe M.},
journal = {Microbiol Immunol},
year = {2016},
doi = {10.1111/1348-0421.12409},
pmid = {27515393}
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@article{lin65595,
title = {A Link between Integral Membrane Protein Expression and Simulated Integration Efficiency.},
author = {Marshall SS, Niesen MJM, Muller A, Tiemann K, Saladi SM, Galimidi RP, Zhang B, Clemons WM, Miller TF.},
journal = {Cell Rep},
year = {2016},
doi = {10.1016/j.celrep.2016.07.042},
pmid = {27524616}
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@article{lin65570,
title = {Pertussis in infants: an underestimated disease.},
author = {Vittucci AC, Spuri Vennarucci V, Grandin A, Russo C, Lancella L, Tozzi AE, Bartuli A, Villani A.},
journal = {BMC Infect Dis},
year = {2016},
doi = {10.1186/s12879-016-1710-0},
pmid = {27528377}
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title = {Periodic solutions in an SIRWS model with immune boosting and cross-immunity.},
author = {Leung T, Hughes BD, Frascoli F, McCaw JM.},
journal = {J Theor Biol},
year = {2016},
doi = {10.1016/j.jtbi.2016.08.034},
pmid = {27575466}
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@article{lin65446,
title = {Old Disease and New Challenges: Major Obstacles of Current Strategies in the Prevention of Pertussis.},
author = {Sedighi I, Karimi A, Amanati A.},
journal = {Iran J Pediatr},
year = {2016},
doi = {10.5812/ijp.5514},
pmid = {27729960}
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@article{lin65204,
title = {Essential role of Bordetella NadC in a quinolinate salvage pathway for NAD biosynthesis.},
author = {Brickman TJ, Suhadolc RJ, McKelvey PJ, Armstrong SK.},
journal = {Mol Microbiol},
year = {2017},
doi = {10.1111/mmi.13566},
pmid = {27783449}
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title = {Morbidity and Mortality Due to Bordetella pertussis: A Significant Pathogen in West Africa?},
author = {Kampmann B, Mackenzie G.},
journal = {Clin Infect Dis},
year = {2016},
doi = {10.1093/cid/ciw560},
pmid = {27838666}
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@article{lin65738,
title = {Incidence of Severe and Nonsevere Pertussis Among HIV-Exposed and -Unexposed Zambian Infants Through 14 Weeks of Age: Results From the Southern Africa Mother Infant Pertussis Study (SAMIPS), a Longitudinal Birth Cohort Study.},
author = {Gill CJ, Mwananyanda L, MacLeod W, Kwenda G, Mwale M, Williams AL, Siazeele K, Yang Z, Mwansa J, Thea DM.},
journal = {Clin Infect Dis},
year = {2016},
doi = {10.1093/cid/ciw526},
pmid = {27838668}
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@article{lin65397,
title = {Population-Based Pertussis Incidence and Risk Factors in Infants Less Than 6 Months in Nepal.},
author = {Hughes MM, Englund JA, Kuypers J, Tielsch JM, Khatry SK, Shrestha L, LeClerq SC, Steinhoff M, Katz J.},
journal = {J Pediatric Infect Dis Soc},
year = {2017},
doi = {10.1093/jpids/piw079},
pmid = {28073985}
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@article{lin65688,
title = {Emerging Bordetella pertussis Strains Induce Enhanced Signaling of Human Pattern Recognition Receptors TLR2, NOD2 and Secretion of IL-10 by Dendritic Cells.},
author = {Hovingh ES, van Gent M, Hamstra HJ, Demkes M, Mooi FR, Pinelli E.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0170027},
pmid = {28076445}
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@article{lin65604,
title = {Broad-Range Detection of Microorganisms Directly from Bronchoalveolar Lavage Specimens by PCR/Electrospray Ionization-Mass Spectrometry.},
author = {Ullberg M, Luthje P, Molling P, Stralin K, Ozenci V.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0170033},
pmid = {28085931}
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@article{lin65470,
title = {Bordetella parapertussis Circumvents Neutrophil Extracellular Bactericidal Mechanisms.},
author = {Gorgojo J, Scharrig E, Gomez RM, Harvill ET, Rodriguez ME.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0169936},
pmid = {28095485}
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@article{lin65527,
title = {Protective Role of Passively Transferred Maternal Cytokines against Bordetella pertussis Infection in Newborn Piglets.},
author = {Elahi S, Thompson DR, Van Kessel J, Babiuk LA, Gerdts V.},
journal = {Infect Immun},
year = {2017},
doi = {10.1128/iai.01063-16},
pmid = {28167667}
}
@article{lin65715,
title = {Fine Epitope Mapping of Two Antibodies Neutralizing the Bordetella Adenylate Cyclase Toxin.},
author = {Wang X, Stapleton JA, Klesmith JR, Hewlett EL, Whitehead TA, Maynard JA.},
journal = {Biochemistry},
year = {2017},
doi = {10.1021/acs.biochem.6b01163},
pmid = {28177609}
}
@article{lin65524,
title = {Assessment of the Usefulness of Multiplex Real-Time PCR Tests in the Diagnostic and Therapeutic Process of Pneumonia in Hospitalized Children: A Single-Center Experience.},
author = {Gowin E, Bartkowska-Sniatkowska A, Jonczyk-Potoczna K, Wysocka-Leszczynska J, Bobkowski W, Fichna P, Sobkowiak P, Mazur-Melewska K, Breborowicz A, Wysocki J, Januszkiewicz-Lewandowska D.},
journal = {Biomed Res Int},
year = {2017},
doi = {10.1155/2017/8037963},
pmid = {28182108}
}
@article{lin65138,
title = {Do Pertussis Vaccines Protect Against Bordetella parapertussis?},
author = {Liko J, Robison SG, Cieslak PR.},
journal = {Clin Infect Dis},
year = {2017},
doi = {10.1093/cid/cix221},
pmid = {28369240}
}
@article{lin65516,
title = {Improving specificity of Bordetella pertussis detection using a four target real-time PCR.},
author = {Martini H, Detemmerman L, Soetens O, Yusuf E, Pierard D.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0175587},
pmid = {28403204}
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@article{lin65640,
title = {Characterization of a Bvg-regulated fatty acid methyl-transferase in Bordetella pertussis.},
author = {Rivera-Millot A, Lesne E, Solans L, Coutte L, Bertrand-Michel J, Froguel P, Dhennin V, Hot D, Locht C, Antoine R, Jacob-Dubuisson F.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0176396},
pmid = {28493897}
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@article{lin65563,
title = {Epidemiology of pertussis in Casablanca (Morocco): contribution of conventional and molecular diagnosis tools.},
author = {Katfy K, Guiso N, Diawara I, Zerouali K, Slaoui B, Jouhadi Z, Zineddine A, Belabbes H, Elmdaghri N.},
journal = {BMC Infect Dis},
year = {2017},
doi = {10.1186/s12879-017-2452-3},
pmid = {28511667}
}
@article{lin65359,
title = {Spontaneous Acute Subdural Hemorrhage in a Patient with a Tick Borne Bunyavirus-Induced Severe Fever with Thrombocytopenia Syndrome.},
author = {Yoo J, Oh JW, Jang CG, Moon JH, Kim EH, Chang JH, Kim SH, Kang SG.},
journal = {Korean J Neurotrauma},
year = {2017},
doi = {10.13004/kjnt.2017.13.1.57},
pmid = {28512621}
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@article{lin65237,
title = {Bordetella parapertussis outbreak in Southeastern Minnesota and the United States, 2014.},
author = {Karalius VP, Rucinski SL, Mandrekar JN, Patel R.},
journal = {Medicine (Baltimore)},
year = {2017},
doi = {10.1097/md.0000000000006730},
pmid = {28514288}
}
@article{lin65156,
title = {[Infection by Bordetella pertussis and bordetella parapertussis in cases of suspected whooping cough (2011-2015) in Mar del Plata, Argentina].},
author = {Lavayen S, Zotta C, Cepeda M, Lara C, Rearte A, Regueira M.},
journal = {Rev Peru Med Exp Salud Publica},
year = {2017},
doi = {10.17843/rpmesp.2017.341.2770},
pmid = {28538850}
}
@article{lin65667,
title = {The Bordetella Bps Polysaccharide Is Required for Biofilm Formation and Enhances Survival in the Lower Respiratory Tract of Swine.},
author = {Nicholson TL, Brockmeier SL, Sukumar N, Paharik AE, Lister JL, Horswill AR, Kehrli ME, Loving CL, Shore SM, Deora R.},
journal = {Infect Immun},
year = {2017},
doi = {10.1128/iai.00261-17},
pmid = {28559403}
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@article{lin65674,
title = {Ventilator-Associated Pneumonia: The Role of Emerging Diagnostic Technologies.},
author = {Kollef MH, Burnham CD.},
journal = {Semin Respir Crit Care Med},
year = {2017},
doi = {10.1055/s-0037-1599224},
pmid = {28578550}
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@article{lin65535,
title = {Pertussis diagnosis in Belgium: results of the National Reference Centre for Bordetella anno 2015.},
author = {Martini H, Rodeghiero C, VAN DEN Poel C, Vincent M, Pierard D, Huygen K.},
journal = {Epidemiol Infect},
year = {2017},
doi = {10.1017/s0950268817001108},
pmid = {28578723}
}
@article{lin65361,
title = {A high seroprevalence of antibodies to pertussis toxin among Japanese adults: Qualitative and quantitative analyses.},
author = {Moriuchi T, Otsuka N, Hiramatsu Y, Shibayama K, Kamachi K.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0181181},
pmid = {28700751}
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@article{lin65354,
title = {Pertussis Reinfection in an Adult: A Cause of Persistent Cough Not to Be Ignored.},
author = {Koufakis T, Paschala A, Siapardanis D.},
journal = {Case Rep Infect Dis},
year = {2017},
doi = {10.1155/2017/4786141},
pmid = {28785495}
}
@article{lin65540,
title = {Activation of Bvg-Repressed Genes in Bordetella pertussis by RisA Requires Cross Talk from Noncooperonic Histidine Kinase RisK.},
author = {Chen Q, Ng V, Warfel JM, Merkel TJ, Stibitz S.},
journal = {J Bacteriol},
year = {2017},
doi = {10.1128/jb.00475-17},
pmid = {28827216}
}
@article{lin65477,
title = {Pertussis outbreak investigation of Mekdela district, South Wollo zone, Amhara region, North-West Ethiopia.},
author = {Alamaw SD, Kassa AW, Gelaw YA.},
journal = {BMC Res Notes},
year = {2017},
doi = {10.1186/s13104-017-2735-1},
pmid = {28830538}
}
@article{lin65406,
title = {Detection of respiratory syncytial virus (RSV) at birth in a newborn with respiratory distress.},
author = {Manti S, Cuppari C, Lanzafame A, Salpietro C, Betta P, Leonardi S, Perez MK, Piedimonte G.},
journal = {Pediatr Pulmonol},
year = {2017},
doi = {10.1002/ppul.23775},
pmid = {28834426}
}
@article{lin65666,
title = {Genome Reduction for Niche Association in Campylobacter Hepaticus, A Cause of Spotty Liver Disease in Poultry.},
author = {Petrovska L, Tang Y, Jansen van Rensburg MJ, Cawthraw S, Nunez J, Sheppard SK, Ellis RJ, Whatmore AM, Crawshaw TR, Irvine RM.},
journal = {Front Cell Infect Microbiol},
year = {2017},
doi = {10.3389/fcimb.2017.00354},
pmid = {28848714}
}
@article{lin65140,
title = {A recombinant iron transport protein from Bordetella pertussis confers protection against Bordetella parapertussis.},
author = {Alvarez Hayes J, Oviedo JM, Valdez H, Laborde JM, Maschi F, Ayala M, Shah R, Fernandez Lahore M, Rodriguez ME.},
journal = {Microbiol Immunol},
year = {2017},
doi = {10.1111/1348-0421.12532},
pmid = {28857261}
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@article{lin65618,
title = {Improving membrane protein expression by optimizing integration efficiency.},
author = {Niesen MJM, Marshall SS, Miller TF, Clemons WM.},
journal = {J Biol Chem},
year = {2017},
doi = {10.1074/jbc.m117.813469},
pmid = {28918393}
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@article{lin65253,
title = {Characterization of Post-Translational Modifications and Cytotoxic Properties of the Adenylate-Cyclase Hemolysin Produced by Various Bordetella pertussis and Bordetella parapertussis Isolates.},
author = {Bouchez V, Douche T, Dazas M, Delaplane S, Matondo M, Chamot-Rooke J, Guiso N.},
journal = {Toxins (Basel)},
year = {2017},
doi = {10.3390/toxins9100304},
pmid = {28954396}
}
@article{lin65390,
title = {Pertussis and Pertussis like Illness: Pediatric Experience in Oman.},
author = {Al Maani A, Al Qayoudhi A, Nazir HF, Omar H, Al Jardani A, Al Muharrmi Z, Wali Y.},
journal = {Oman Med J},
year = {2017},
doi = {10.5001/omj.2017.75},
pmid = {29026471}
}
@article{lin65549,
title = {Clinical Characteristics of Hospitalized Infants With Laboratory-Confirmed Pertussis in Guatemala.},
author = {Phadke VK, McCracken JP, Kriss JL, Lopez MR, Lindblade KA, Bryan JP, Garcia ME, Funes CE, Omer SB.},
journal = {J Pediatric Infect Dis Soc},
year = {2018},
doi = {10.1093/jpids/pix081},
pmid = {29045690}
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@article{lin65380,
title = {In Vitro Antibacterial Properties of Cefiderocol, a Novel Siderophore Cephalosporin, against Gram-Negative Bacteria.},
author = {Ito A, Sato T, Ota M, Takemura M, Nishikawa T, Toba S, Kohira N, Miyagawa S, Ishibashi N, Matsumoto S, Nakamura R, Tsuji M, Yamano Y.},
journal = {Antimicrob Agents Chemother},
year = {2018},
doi = {10.1128/aac.01454-17},
pmid = {29061741}
}
@article{lin65725,
title = {Syndromic Panel-Based Testing in Clinical Microbiology.},
author = {Ramanan P, Bryson AL, Binnicker MJ, Pritt BS, Patel R.},
journal = {Clin Microbiol Rev},
year = {2018},
doi = {10.1128/cmr.00024-17},
pmid = {29142077}
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@article{lin65399,
title = {Membrane Vesicles Derived from Bordetella bronchiseptica: Active Constituent of a New Vaccine against Infections Caused by This Pathogen.},
author = {Bottero D, Zurita ME, Gaillard ME, Bartel E, Vercellini C, Hozbor D.},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/aem.01877-17},
pmid = {29180369}
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@article{lin65622,
title = {Multicenter Evaluation of the ePlex Respiratory Pathogen Panel for the Detection of Viral and Bacterial Respiratory Tract Pathogens in Nasopharyngeal Swabs.},
author = {Babady NE, England MR, Jurcic Smith KL, He T, Wijetunge DS, Tang YW, Chamberland RR, Menegus M, Swierkosz EM, Jerris RC, Greene W.},
journal = {J Clin Microbiol},
year = {2018},
doi = {10.1128/jcm.01658-17},
pmid = {29212701}
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@article{lin65407,
title = {Clinical implications of rapid ePlex® Respiratory Pathogen Panel testing compared to laboratory-developed real-time PCR.},
author = {van Rijn AL, Nijhuis RHT, Bekker V, Groeneveld GH, Wessels E, Feltkamp MCW, Claas ECJ.},
journal = {Eur J Clin Microbiol Infect Dis},
year = {2018},
doi = {10.1007/s10096-017-3151-0},
pmid = {29222697}
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@article{lin65683,
title = {New Developments in Rapid Diagnostic Testing for Children.},
author = {Gonzalez MD, McElvania E.},
journal = {Infect Dis Clin North Am},
year = {2018},
doi = {10.1016/j.idc.2017.11.006},
pmid = {29269192}
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@article{lin65149,
title = {Species interactions may help explain the erratic periodicity of whooping cough dynamics.},
author = {Bhattacharyya S, Ferrari MJ, Bjornstad ON.},
journal = {Epidemics},
year = {2018},
doi = {10.1016/j.epidem.2017.12.005},
pmid = {29306640}
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@article{lin65383,
title = {Anti-N-methyl-D-aspartate receptor encephalitis associated with acute Toxoplasma gondii infection: A case report.},
author = {Cai X, Zhou H, Xie Y, Yu D, Wang Z, Ren H.},
journal = {Medicine (Baltimore)},
year = {2018},
doi = {10.1097/md.0000000000009924},
pmid = {29443773}
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@article{lin65637,
title = {The Transcriptional Regulator BpsR Controls the Growth of Bordetella bronchiseptica by Repressing Genes Involved in Nicotinic Acid Degradation.},
author = {Guragain M, Jennings-Gee J, Cattelan N, Finger M, Conover MS, Hollis T, Deora R.},
journal = {J Bacteriol},
year = {2018},
doi = {10.1128/jb.00712-17},
pmid = {29581411}
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@article{lin65263,
title = {Multicenter Evaluation of BioFire FilmArray Respiratory Panel 2 for Detection of Viruses and Bacteria in Nasopharyngeal Swab Samples.},
author = {Leber AL, Everhart K, Daly JA, Hopper A, Harrington A, Schreckenberger P, McKinley K, Jones M, Holmberg K, Kensinger B.},
journal = {J Clin Microbiol},
year = {2018},
doi = {10.1128/jcm.01945-17},
pmid = {29593057}
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@article{lin65616,
title = {Filifactor alocis manipulates human neutrophils affecting their ability to release neutrophil extracellular traps induced by PMA.},
author = {Armstrong CL, Klaes CK, Vashishta A, Lamont RJ, Uriarte SM.},
journal = {Innate Immun},
year = {2018},
doi = {10.1177/1753425918767507},
pmid = {29649915}
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@article{lin65392,
title = {Detection of Pathogenic Viruses in the Ambient Air in Seoul, Korea.},
author = {Han TH, Park SH, Chung JY, Jeong HW, Jung J, Lee JI, Hwang YO, Kim IY, Lee JH, Jung K.},
journal = {Food Environ Virol},
year = {2018},
doi = {10.1007/s12560-018-9348-2},
pmid = {29761411}
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@article{lin65363,
title = {A case of acute disseminated encephalomyelitis following Mycoplasma pneumoniae infection.},
author = {Laila A, El-Lababidi RM, Hisham M, Mooty M.},
journal = {IDCases},
year = {2018},
doi = {10.1016/j.idcr.2018.03.003},
pmid = {29942745}
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@article{lin65579,
title = {Azithromycin Clears Bordetella pertussis Infection in Mice but Also Modulates Innate and Adaptive Immune Responses and T Cell Memory.},
author = {Borkner L, Misiak A, Wilk MM, Mills KHG.},
journal = {Front Immunol},
year = {2018},
doi = {10.3389/fimmu.2018.01764},
pmid = {30105030}
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@article{lin65299,
title = {The challenges of treating tracheobronchitis in a laryngectomee due to nontypeable Haemophilus influenzae: a case report.},
author = {Brook I.},
journal = {J Med Case Rep},
year = {2018},
doi = {10.1186/s13256-018-1764-2},
pmid = {30124173}
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@article{lin65442,
title = {High antibiotic prescription rates in hospitalized children with human metapneumovirus infection in comparison to RSV infection emphasize the value of point-of-care diagnostics.},
author = {Schreiner D, Groendahl B, Puppe W, Off HNT, Poplawska K, Knuf M, Meyer CU, Reischl AT, Gehring S.},
journal = {Infection},
year = {2019},
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@article{lin65531,
title = {Impact of microbial Aetiology on mortality in severe community-acquired pneumonia.},
author = {Quah J, Jiang B, Tan PC, Siau C, Tan TY.},
journal = {BMC Infect Dis},
year = {2018},
doi = {10.1186/s12879-018-3366-4},
pmid = {30180811}
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@article{lin65334,
title = {Blood or Serum Exposure Induce Global Transcriptional Changes, Altered Antigenic Profile, and Increased Cytotoxicity by Classical Bordetellae.},
author = {Gestal MC, Rivera I, Howard LK, Dewan KK, Soumana IH, Dedloff M, Nicholson TL, Linz B, Harvill ET.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01969},
pmid = {30245672}
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@article{lin65234,
title = {Nasopharyngeal isolates and their clinical impact on young children with asthma: a pilot study.},
author = {Alsuwaidi AR, Alkalbani AM, Alblooshi A, George J, Albadi G, Kamal SM, Narchi H, Souid AK.},
journal = {J Asthma Allergy},
year = {2018},
doi = {10.2147/jaa.s169966},
pmid = {30254474}
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@article{lin65218,
title = {Respiratory Viruses and Atypical Bacteria Co-Infection in Children with Acute Respiratory Infection.},
author = {Baroudy NRE, Refay ASE, Hamid TAA, Hassan DM, Soliman MS, Sherif L.},
journal = {Open Access Maced J Med Sci},
year = {2018},
doi = {10.3889/oamjms.2018.332},
pmid = {30337970}
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title = {The classical Bordetella species and MALDI-TOF technology: a brief experience.},
author = {Zintgraff J, Irazu L, Lara CS, Rodriguez M, Santos M.},
journal = {J Med Microbiol},
year = {2018},
doi = {10.1099/jmm.0.000860},
pmid = {30372410}
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@article{lin65006,
title = {Validation and Implementation of a Diagnostic Algorithm for DNA Detection of Bordetella pertussis, B. parapertussis, and B. holmesii in a Pediatric Referral Hospital in Barcelona, Spain.},
author = {Valero-Rello A, Henares D, Acosta L, Jane M, Jordan I, Godoy P, Munoz-Almagro C.},
journal = {J Clin Microbiol},
year = {2019},
doi = {10.1128/jcm.01231-18},
pmid = {30404946}
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@article{lin65385,
title = {Comparison of lung ultrasound and chest X-ray findings in children with bronchiolitis.},
author = {Jaszczolt S, Polewczyk T, Dolega-Kozierowska M, Wozniak M, Doniec Z.},
journal = {J Ultrason},
year = {2018},
doi = {10.15557/jou.2018.0029},
pmid = {30427130}
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@article{lin65284,
title = {Outer-Membrane-Vesicle-Associated O Antigen, a Crucial Component for Protecting Against Bordetella parapertussis Infection.},
author = {Bottero D, Zurita ME, Gaillard ME, Carriquiriborde F, Martin Aispuro P, Elizagaray M, Bartel E, Castuma C, Hozbor D.},
journal = {Front Immunol},
year = {2018},
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@article{lin65283,
title = {Multicenter Clinical Evaluation of the Automated Aries Bordetella Assay.},
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journal = {J Clin Microbiol},
year = {2019},
doi = {10.1128/jcm.01471-18},
pmid = {30518543}
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@article{lin65158,
title = {Pertussis epidemiology in Tunisian infants and children and characterization of Bordetella pertussis isolates: results of a 9-year surveillance study, 2007 to 2016.},
author = {Ben Fraj I, Kechrid A, Guillot S, Bouchez V, Brisse S, Guiso N, Smaoui H.},
journal = {J Med Microbiol},
year = {2019},
doi = {10.1099/jmm.0.000892},
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title = {The Role of Mucosal Immunity in Pertussis.},
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title = {Evaluation of the Aries Bordetella Assay for Detection and Identification of Bordetella pertussis in Nasopharyngeal Swab Specimens.},
author = {McMillen T, Chow HY, Das S, Dunbar SA, Babady NE.},
journal = {J Clin Microbiol},
year = {2019},
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pmid = {30787143}
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title = {Optimizing treatment of respiratory tract infections in nursing homes: Nurse-initiated polymerase chain reaction testing.},
author = {Dowson L, Marshall C, Buising K, Friedman ND, Kong DCM, Stuart RL.},
journal = {Am J Infect Control},
year = {2019},
doi = {10.1016/j.ajic.2019.02.001},
pmid = {30851997}
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title = {Bordetella parapertussis Bacteremia: Clinical Expression and Bacterial Genomics.},
author = {Toubiana J, Azarnoush S, Bouchez V, Landier A, Guillot S, Matczak S, Bonacorsi S, Brisse S.},
journal = {Open Forum Infect Dis},
year = {2019},
doi = {10.1093/ofid/ofz122},
pmid = {30976607}
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title = {More targeted use of oseltamivir and in-hospital isolation facilities after implementation of a multifaceted strategy including a rapid molecular diagnostic panel for respiratory viruses in immunocompromised adult patients.},
author = {Vos LM, Weehuizen JM, Hoepelman AIM, Kaasjager KHAH, Riezebos-Brilman A, Oosterheert JJ.},
journal = {J Clin Virol},
year = {2019},
doi = {10.1016/j.jcv.2019.04.003},
pmid = {30999234}
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title = {Introducing a New Algorithm for Classification of Etiology in Studies on Pediatric Pneumonia: Protocol for the Trial of Respiratory Infections in Children for Enhanced Diagnostics Study.},
author = {Rhedin SA, Eklundh A, Ryd-Rinder M, Naucler P, Martensson A, Gantelius J, Zenk I, Andersson-Svahn H, Nybond S, Rasti R, Lindh M, Andersson M, Peltola V, Waris M, Alfven T.},
journal = {JMIR Res Protoc},
year = {2019},
doi = {10.2196/12705},
pmid = {31025954}
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title = {Spatio-temporal comparison of pertussis outbreaks in Olmsted County, Minnesota, 2004-2005 and 2012: a population-based study.},
author = {Wi CI, Wheeler PH, Kaur H, Ryu E, Kim D, Juhn Y.},
journal = {BMJ Open},
year = {2019},
doi = {10.1136/bmjopen-2018-025521},
pmid = {31110089}
}
@article{lin65401,
title = {Bacterial Aetiologies of Lower Respiratory Tract Infections among Adults in Yaoundé, Cameroon.},
author = {Tchatchouang S, Nzouankeu A, Kenmoe S, Ngando L, Penlap V, Fonkoua MC, Pefura-Yone EW, Njouom R.},
journal = {Biomed Res Int},
year = {2019},
doi = {10.1155/2019/4834396},
pmid = {31119172}
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@article{lin65131,
title = {Bordetella pertussis in a four-time kidney transplant recipient: A call for immunization programs at transplant centers.},
author = {Hovel EM, Pease RC, Scarano AJ, Chen DJ, Saddler CM.},
journal = {Transpl Infect Dis},
year = {2019},
doi = {10.1111/tid.13120},
pmid = {31124247}
}
@article{lin65466,
title = {Bronchiectasis and cough: An old relationship in need of renewed attention.},
author = {Mac Aogain M, Chotirmall SH.},
journal = {Pulm Pharmacol Ther},
year = {2019},
doi = {10.1016/j.pupt.2019.101812},
pmid = {31176801}
}
@article{lin65364,
title = {Therapeutic effect of vitamin K1 combined with meropenem on the treatment of pertussis syndrome.},
author = {Chen W, Guo Y.},
journal = {Exp Ther Med},
year = {2019},
doi = {10.3892/etm.2019.7586},
pmid = {31258701}
}
@article{lin65105,
title = {Shotgun proteomic analysis of Bordetella parapertussis provides insights into the physiological response to iron starvation and potential new virulence determinants absent in Bordetella pertussis.},
author = {Oviedo JM, Surmann K, Gorgojo JP, Valdez H, Dhople VM, Lamberti Y, Volker U, Rodriguez ME.},
journal = {J Proteomics},
year = {2019},
doi = {10.1016/j.jprot.2019.103448},
pmid = {31325608}
}
@article{lin65217,
title = {Ellipsometric-based novel DNA biosensor for label-free, real-time detection of Bordetella parapertussis.},
author = {Rafique S, Idrees M, Bokhari H, Bhatti AS.},
journal = {J Biol Phys},
year = {2019},
doi = {10.1007/s10867-019-09528-2},
pmid = {31375953}
}
@article{lin65133,
title = {Streptococcus pneumoniae and Haemophilus influenzae nasopharyngeal molecular detection in children with acute respiratory tract infection in SANADOR Hospital, Romania.},
author = {Giuca MC, Cilcic C, Mihaescu G, Gavrila A, Dinescu M, Gatej RI.},
journal = {J Med Microbiol},
year = {2019},
doi = {10.1099/jmm.0.001038},
pmid = {31389781}
}
@article{lin65090,
title = {A novel multilocus variable-number tandem repeat analysis for Bordetella parapertussis.},
author = {Kamachi K, Otsuka N, Fumimoto R, Ozawa K, Yao SM, Chiang CS, Luu LDW, Lan R, Shibayama K, Watanabe M.},
journal = {J Med Microbiol},
year = {2019},
doi = {10.1099/jmm.0.001095},
pmid = {31613204}
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title = {Pertussis hospitalizations among term and preterm infants: clinical course and vaccine effectiveness.},
author = {van der Maas NAT, Sanders EAM, Versteegh FGA, Baauw A, Westerhof A, de Melker HE.},
journal = {BMC Infect Dis},
year = {2019},
doi = {10.1186/s12879-019-4563-5},
pmid = {31664950}
}
@article{lin65427,
title = {Structural mechanism for regulation of DNA binding of BpsR, a Bordetella regulator of biofilm formation, by 6-hydroxynicotinic acid.},
author = {Booth WT, Davis RR, Deora R, Hollis T.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0223387},
pmid = {31697703}
}
@article{lin65371,
title = {Trends in Hospital Admissions for Pertussis Infection: A Nationwide Retrospective Observational Study in Italy, 2002-2016.},
author = {Fiasca F, Gabutti G, Mattei A.},
journal = {Int J Environ Res Public Health},
year = {2019},
doi = {10.3390/ijerph16224531},
pmid = {31731820}
}
@article{lin65168,
title = {Comparative Clinical Evaluation of NeoPlex RB-8 with Seeplex PneumoBacter ACE for Simultaneous Detection of Eight Respiratory Bacterial Pathogens.},
author = {Kim JW, Hong SS, Lee IS, Chi HY, Kim SO, Kim HN, Hong SP.},
journal = {J Clin Microbiol},
year = {2020},
doi = {10.1128/jcm.01500-19},
pmid = {31748320}
}
@article{lin65400,
title = {PAU-1, a Novel Plasmid-Encoded Ambler Class A beta-Lactamase Identified in a Clinical Pseudomonas aeruginosa Isolate.},
author = {Wang J, Xu T, Ying J, Zhou W, Chen Q, Qian C, Zhu X, Shen K, Li P, Li K, Bao Q, Lu J.},
journal = {Infect Drug Resist},
year = {2019},
doi = {10.2147/idr.s225288},
pmid = {31824180}
}
@article{lin65365,
title = {Analysis of the effects of storage temperature and contamination on aerobic bacterial culture results of bronchoalveolar lavage fluid.},
author = {Curran M, Boothe DM, Hathcock TL, Lee-Fowler T.},
journal = {J Vet Intern Med},
year = {2020},
doi = {10.1111/jvim.15686},
pmid = {31860163}
}
@article{lin65703,
title = {The architecture of the diaminobutyrate acetyltransferase active site provides mechanistic insight into the biosynthesis of the chemical chaperone ectoine.},
author = {Richter AA, Kobus S, Czech L, Hoeppner A, Zarzycki J, Erb TJ, Lauterbach L, Dickschat JS, Bremer E, Smits SHJ.},
journal = {J Biol Chem},
year = {2020},
doi = {10.1074/jbc.ra119.011277},
pmid = {31969391}
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@article{lin65568,
title = {A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster.},
author = {Chan JF, Yuan S, Kok KH, To KK, Chu H, Yang J, Xing F, Liu J, Yip CC, Poon RW, Tsoi HW, Lo SK, Chan KH, Poon VK, Chan WM, Ip JD, Cai JP, Cheng VC, Chen H, Hui CK, Yuen KY.},
journal = {Lancet},
year = {2020},
doi = {10.1016/s0140-6736(20)30154-9},
pmid = {31986261}
}
@article{lin65438,
title = {The clinical impact of PCR-based point-of-care diagnostic in respiratory tract infections in children.},
author = {Reischl AT, Schreiner D, Poplawska K, Kidszun A, Zepp F, Grondahl B, Gehring S.},
journal = {J Clin Lab Anal},
year = {2020},
doi = {10.1002/jcla.23203},
pmid = {32032458}
}
@article{lin65589,
title = {Cefiderocol: A Novel Agent for the Management of Multidrug-Resistant Gram-Negative Organisms.},
author = {Wu JY, Srinivas P, Pogue JM.},
journal = {Infect Dis Ther},
year = {2020},
doi = {10.1007/s40121-020-00286-6},
pmid = {32072491}
}
@article{lin65352,
title = {Optimization of sample preparation for culture-independent sequencing of Bordetella pertussis.},
author = {Fong W, Rockett R, Timms V, Sintchenko V.},
journal = {Microb Genom},
year = {2020},
doi = {10.1099/mgen.0.000332},
pmid = {32108565}
}
@article{lin65515,
title = {Multicenter Evaluation of the QIAstat-Dx Respiratory Panel for Detection of Viruses and Bacteria in Nasopharyngeal Swab Specimens.},
author = {Leber AL, Lisby JG, Hansen G, Relich RF, Schneider UV, Granato P, Young S, Pareja J, Hannet I.},
journal = {J Clin Microbiol},
year = {2020},
doi = {10.1128/jcm.00155-20},
pmid = {32132186}
}
@article{lin65485,
title = {Multicenter evaluation of the QIAstat Respiratory Panel-A new rapid highly multiplexed PCR based assay for diagnosis of acute respiratory tract infections.},
author = {Parcina M, Schneider UV, Visseaux B, Jozic R, Hannet I, Lisby JG.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0230183},
pmid = {32163484}
}
@article{lin65597,
title = {Membrane Activity and Channel Formation of the Adenylate Cyclase Toxin (CyaA) of Bordetella pertussis in Lipid Bilayer Membranes.},
author = {Knapp O, Benz R.},
journal = {Toxins (Basel)},
year = {2020},
doi = {10.3390/toxins12030169},
pmid = {32164365}
}
@article{lin65413,
title = {Validation of a Loop-Mediated Isothermal Amplification Assay for Rapid Diagnosis of Invasive Pneumococcal Disease.},
author = {de Paz HD, Brotons P, Esteva C, Munoz-Almagro C.},
journal = {Front Cell Infect Microbiol},
year = {2020},
doi = {10.3389/fcimb.2020.00115},
pmid = {32266166}
}
@article{lin65367,
title = {Species Identification and Antibiotic Resistance Prediction by Analysis of Whole-Genome Sequence Data by Use of ARESdb: an Analysis of Isolates from the Unyvero Lower Respiratory Tract Infection Trial.},
author = {Ferreira I, Beisken S, Lueftinger L, Weinmaier T, Klein M, Bacher J, Patel R, von Haeseler A, Posch AE.},
journal = {J Clin Microbiol},
year = {2020},
doi = {10.1128/jcm.00273-20},
pmid = {32295890}
}
@article{lin65578,
title = {Evaluation of the BioFire FilmArray Pneumonia Panel for Detection of Viral and Bacterial Pathogens in Lower Respiratory Tract Specimens in the Setting of a Tertiary Care Academic Medical Center.},
author = {Webber DM, Wallace MA, Burnham CA, Anderson NW.},
journal = {J Clin Microbiol},
year = {2020},
doi = {10.1128/jcm.00343-20},
pmid = {32321782}
}
@article{lin65343,
title = {Comparative genomics of whole-cell pertussis vaccine strains from India.},
author = {Alai S, Ghattargi VC, Gautam M, Patel K, Pawar SP, Dhotre DP, Shaligram U, Gairola S.},
journal = {BMC Genomics},
year = {2020},
doi = {10.1186/s12864-020-6724-8},
pmid = {32381023}
}
@article{lin65323,
title = {Pathogen analysis of pertussis-like syndrome in children.},
author = {Gu W, Wang K, Zhang X, Hao C, Lu Y, Wu M, Chen S, He Y, Xu J, Shao X, Wang Y.},
journal = {BMC Infect Dis},
year = {2020},
doi = {10.1186/s12879-020-05074-8},
pmid = {32429853}
}
@article{lin65424,
title = {Virus-induced genetics revealed by multidimensional precision medicine transcriptional workflow applicable to COVID-19.},
author = {Prokop JW, Shankar R, Gupta R, Leimanis ML, Nedveck D, Uhl K, Chen B, Hartog NL, Van Veen J, Sisco JS, Sirpilla O, Lydic T, Boville B, Hernandez A, Braunreiter C, Kuk CC, Singh V, Mills J, Wegener M, Adams M, Rhodes M, Bachmann AS, Pan W, Byrne-Steele ML, Smith DC, Depinet M, Brown BE, Eisenhower M, Han J, Haw M, Madura C, Sanfilippo DJ, Seaver LH, Bupp C, Rajasekaran S.},
journal = {Physiol Genomics},
year = {2020},
doi = {10.1152/physiolgenomics.00045.2020},
pmid = {32437232}
}
@article{lin65508,
title = {Paediatric multisystem inflammatory syndrome temporally associated with SARS-CoV-2 mimicking Kawasaki disease (Kawa-COVID-19): a multicentre cohort.},
author = {Pouletty M, Borocco C, Ouldali N, Caseris M, Basmaci R, Lachaume N, Bensaid P, Pichard S, Kouider H, Morelle G, Craiu I, Pondarre C, Deho A, Maroni A, Oualha M, Amoura Z, Haroche J, Chommeloux J, Bajolle F, Beyler C, Bonacorsi S, Carcelain G, Kone-Paut I, Bader-Meunier B, Faye A, Meinzer U, Galeotti C, Melki I.},
journal = {Ann Rheum Dis},
year = {2020},
doi = {10.1136/annrheumdis-2020-217960},
pmid = {32527868}
}
@article{lin65309,
title = {Neurologic alterations in an HIV adult patient with pertussis: a case report.},
author = {Arango-Granados MC, Trompa IM.},
journal = {BMC Infect Dis},
year = {2020},
doi = {10.1186/s12879-020-05198-x},
pmid = {32615931}
}
@article{lin65467,
title = {Emergence of Kawasaki disease related to SARS-CoV-2 infection in an epicentre of the French COVID-19 epidemic: a time-series analysis.},
author = {Ouldali N, Pouletty M, Mariani P, Beyler C, Blachier A, Bonacorsi S, Danis K, Chomton M, Maurice L, Le Bourgeois F, Caseris M, Gaschignard J, Poline J, Cohen R, Titomanlio L, Faye A, Melki I, Meinzer U.},
journal = {Lancet Child Adolesc Health},
year = {2020},
doi = {10.1016/s2352-4642(20)30175-9},
pmid = {32622376}
}
@article{lin65360,
title = {Diagnostic limitations of clinical case definitions of pertussis in infants and children with severe lower respiratory tract infection.},
author = {Muloiwa R, Nicol MP, Hussey GD, Zar HJ.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0235703},
pmid = {32678857}
}
@article{lin65377,
title = {Epidemiology of Severe Acute Respiratory Syndrome Coronavirus 2 Emergence Amidst Community-Acquired Respiratory Viruses.},
author = {Leuzinger K, Roloff T, Gosert R, Sogaard K, Naegele K, Rentsch K, Bingisser R, Nickel CH, Pargger H, Bassetti S, Bielicki J, Khanna N, Tschudin Sutter S, Widmer A, Hinic V, Battegay M, Egli A, Hirsch HH.},
journal = {J Infect Dis},
year = {2020},
doi = {10.1093/infdis/jiaa464},
pmid = {32726441}
}
@article{lin65381,
title = {Cefiderocol Antimicrobial Susceptibility Testing Considerations: the Achilles' Heel of the Trojan Horse?},
author = {Simner PJ, Patel R.},
journal = {J Clin Microbiol},
year = {2020},
doi = {10.1128/jcm.00951-20},
pmid = {32727829}
}
@article{lin65488,
title = {Overcoming Waning Immunity in Pertussis Vaccines: Workshop of the National Institute of Allergy and Infectious Diseases.},
author = {Damron FH, Barbier M, Dubey P, Edwards KM, Gu XX, Klein NP, Lu K, Mills KHG, Pasetti MF, Read RC, Rohani P, Sebo P, Harvill ET.},
journal = {J Immunol},
year = {2020},
doi = {10.4049/jimmunol.2000676},
pmid = {32769142}
}
@article{lin65398,
title = {Pertussis outbreak in southern Ethiopia: challenges of detection, management, and response.},
author = {Mitiku AD, Argaw MD, Desta BF, Tsegaye ZT, Atsa AA, Tefera BB, Teferi E, Rogers D, Beshir IA, Alemu AG, Ayesa DA, Abate DT, Sendeku AG, Muloiwa R.},
journal = {BMC Public Health},
year = {2020},
doi = {10.1186/s12889-020-09303-2},
pmid = {32781999}
}
@article{lin65342,
title = {False-positive SARS-CoV-2 serology in 3 children with Kawasaki disease.},
author = {To KK, Chua GT, Kwok KL, Wong JS, Au DCY, Lam YY, Wong WH, Ho MH, Chan GC, Chui CS, Li X, Tung KT, Wong RS, Tso WW, Wong IC, Wong CS, Fong CH, Chan KH, Yuen KY, Ip P, Kwan MY.},
journal = {Diagn Microbiol Infect Dis},
year = {2020},
doi = {10.1016/j.diagmicrobio.2020.115141},
pmid = {32795776}
}
@article{lin65252,
title = {Updates on Rapid Diagnostic Tests in Infectious Diseases.},
author = {Mizusawa M.},
journal = {Mo Med},
year = {2020},
pmid = {32848269}
}
@article{lin65181,
title = {The burden of laboratory-confirmed pertussis in low- and middle-income countries since the inception of the Expanded Programme on Immunisation (EPI) in 1974: a systematic review and meta-analysis.},
author = {Muloiwa R, Kagina BM, Engel ME, Hussey GD.},
journal = {BMC Med},
year = {2020},
doi = {10.1186/s12916-020-01699-3},
pmid = {32854714}
}
@article{lin65445,
title = {Extracellular vesicles of bacteria as potential targets for immune interventions.},
author = {Peng Y, Yin S, Wang M.},
journal = {Hum Vaccin Immunother},
year = {2021},
doi = {10.1080/21645515.2020.1799667},
pmid = {32873124}
}
@article{lin65010,
title = {Bordetella holmesii Lipopolysaccharide Hide and Seek Game with Pertussis: Structural Analysis of the O-Specific Polysaccharide and the Core Oligosaccharide of the Type Strain ATCC 51541.},
author = {Ucieklak K, Koj S, Niedziela T.},
journal = {Int J Mol Sci},
year = {2020},
doi = {10.3390/ijms21176433},
pmid = {32899371}
}
@article{lin65357,
title = {Crystal structure of XCC3289 from Xanthomonas campestris: homology with the N-terminal substrate-binding domain of Lon peptidase.},
author = {Singh R, Deshmukh S, Kumar A, Goyal VD, Makde RD.},
journal = {Acta Crystallogr F Struct Biol Commun},
year = {2020},
doi = {10.1107/s2053230x20011875},
pmid = {33006577}
}
@article{lin65208,
title = {Multicenter Performance Evaluation of the Simplexa Bordetella Direct Kit in Nasopharyngeal Swab Specimens.},
author = {Chow SK, Arbefeville S, Boyanton BL, Dault EM, Dunn J, Ferrieri P, Greene W, Pence MA, Otiso J, Richter S, Schutzbank TE.},
journal = {J Clin Microbiol},
year = {2020},
doi = {10.1128/jcm.01041-20},
pmid = {33055187}
}
@article{lin65429,
title = {Risk factors for Bordetella pertussis disease in hospitalized children.},
author = {Muloiwa R, Dube FS, Nicol MP, Hussey GD, Zar HJ.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0240717},
pmid = {33057415}
}
@article{lin65112,
title = {Highly selective impedimetric determination of Haemophilus influenzae protein D using maze-like boron-doped carbon nanowall electrodes.},
author = {Brodowski M, Kowalski M, Skwarecka M, Palka K, Skowicki M, Kula A, Lipinski T, Dettlaff A, Ficek M, Ryl J, Dziabowska K, Nidzworski D, Bogdanowicz R.},
journal = {Talanta},
year = {2021},
doi = {10.1016/j.talanta.2020.121623},
pmid = {33076151}
}
@article{lin65321,
title = {Mesenchymal stem cell treatment in a critically ill COVID-19 patient: a case report.},
author = {Zengin R, Beyaz O, Koc ES, Akinci IO, Kocagoz S, Sagcan G, Ovali E, Cuhadaroglu C.},
journal = {Stem Cell Investig},
year = {2020},
doi = {10.21037/sci-2020-024},
pmid = {33110915}
}
@article{lin65259,
title = {Patterns of viral pathogens causing upper respiratory tract infections among symptomatic children in Mwanza, Tanzania.},
author = {Kwiyolecha E, Groendahl B, Okamo B, Kayange N, Manyama F, Kidenya BR, Mahamba DC, Msanga DR, Gehring S, Majigo M, Mshana SE, Mirambo MM.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-74555-2},
pmid = {33116166}
}
@article{lin65202,
title = {Pertussis in Italy: how to protect the "unprotectable"?},
author = {Fiasca F, Necozione S, Mattei A.},
journal = {Hum Vaccin Immunother},
year = {2021},
doi = {10.1080/21645515.2020.1806673},
pmid = {33121322}
}
@article{lin65479,
title = {Antibiotic use and prescription and its effects on Enterobacteriaceae in the gut in children with mild respiratory infections in Ho Chi Minh City, Vietnam. A prospective observational outpatient study.},
author = {Minh NNQ, Toi PV, Qui LM, Tinh LBB, Ngoc NT, Kim LTN, Uyen NH, Hang VTT, Chinh B'Krong NTT, Tham NT, Khoa TD, Khuong HD, Vi PQ, Phuc NNH, Vien LTM, Pouplin T, Khanh DV, Phuong PN, Lam PK, Wertheim HFL, Campbell JI, Baker S, Parry CM, Bryant JE, Schultsz C, Hung NT, de Jong MD, van Doorn HR.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0241760},
pmid = {33147269}
}
@article{lin65658,
title = {Airway Microbiota-Host Interactions Regulate Secretory Leukocyte Protease Inhibitor Levels and Influence Allergic Airway Inflammation.},
author = {Jaeger N, McDonough RT, Rosen AL, Hernandez-Leyva A, Wilson NG, Lint MA, Russler-Germain EV, Chai JN, Bacharier LB, Hsieh CS, Kau AL.},
journal = {Cell Rep},
year = {2020},
doi = {10.1016/j.celrep.2020.108331},
pmid = {33147448}
}
@article{lin65376,
title = {Detection of Respiratory Pathogens Does Not Predict Risks After Outpatient Adenotonsillectomy.},
author = {Vickers DM, Reddy A, Akmyradov C, Brown KM, Boyanton BL, Wright HD, Taylor JA, Childress SH, Hartzell LD, Johnson AB, Key JM, Nolder AR, Richter GT, Wineland AM, Strub GM.},
journal = {Laryngoscope},
year = {2021},
doi = {10.1002/lary.29236},
pmid = {33150974}
}
@article{lin65215,
title = {Point-of-care tests for influenza A and B viruses and RSV in emergency departments - indications, impact on patient management and possible gains by syndromic respiratory testing, Capital Region, Denmark, 2018.},
author = {Schneider UV, Holm MKA, Bang D, Petersen RF, Mortensen S, Trebbien R, Lisby JG.},
journal = {Euro Surveill},
year = {2020},
doi = {10.2807/1560-7917.es.2020.25.44.1900430},
pmid = {33153518}
}
@article{lin65330,
title = {Impact of a Rapid Diagnostic Meningitis/Encephalitis Panel on Antimicrobial Use and Clinical Outcomes in Children.},
author = {McDonald D, Gagliardo C, Chiu S, Di Pentima MC.},
journal = {Antibiotics (Basel)},
year = {2020},
doi = {10.3390/antibiotics9110822},
pmid = {33217913}
}
@article{lin65072,
title = {Bordetella pertussis, a reemerging pathogen in pediatric respiratory infections. A study in Quito, Ecuador.},
author = {Vasconez Noguera S, Jaramillo K, Zabala A, Villacis JE.},
journal = {Rev Argent Microbiol},
year = {2021},
doi = {10.1016/j.ram.2020.07.001},
pmid = {33243445}
}
@article{lin65298,
title = {A Patient with Asymptomatic SARS-CoV-2 Infection Who Presented 86 Days Later with COVID-19 Pneumonia Possibly Due to Reinfection with SARS-CoV-2.},
author = {Sharma R, Sardar S, Mohammad Arshad A, Ata F, Zara S, Munir W.},
journal = {Am J Case Rep},
year = {2020},
doi = {10.12659/ajcr.927154},
pmid = {33257644}
}
@article{lin65464,
title = {SkewIT: The Skew Index Test for large-scale GC Skew analysis of bacterial genomes.},
author = {Lu J, Salzberg SL.},
journal = {PLoS Comput Biol},
year = {2020},
doi = {10.1371/journal.pcbi.1008439},
pmid = {33275607}
}
@article{lin65345,
title = {Mobilome Analysis of Achromobacter spp. Isolates from Chronic and Occasional Lung Infection in Cystic Fibrosis Patients.},
author = {Veschetti L, Sandri A, Patuzzo C, Melotti P, Malerba G, Lleo MM.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9010130},
pmid = {33430044}
}
@article{lin65444,
title = {Clinical and radiological findings of adult hospitalized patients with community-acquired pneumonia from SARS-CoV-2 and endemic human coronaviruses.},
author = {Baek MS, Cha MJ, Kim MC, Chung JW, Kim WY, Choi H, Choi SH.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0245547},
pmid = {33444422}
}
@article{lin65111,
title = {Comparative structural analysis of bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase from Bordetella pertussis and Bordetella parapertussis: a drug target against pertussis.},
author = {Sharn HO, Singh DB, Singh S.},
journal = {In Silico Pharmacol},
year = {2021},
doi = {10.1007/s40203-020-00069-4},
pmid = {33457178}
}
@article{lin65388,
title = {Detection of SARS-CoV-2 and Other Infectious Agents in Lower Respiratory Tract Samples Belonging to Patients Admitted to Intensive Care Units of a Tertiary-Care Hospital, Located in an Epidemic Area, during the Italian Lockdown.},
author = {Calderaro A, Buttrini M, Montecchini S, Piccolo G, Martinelli M, Dell'Anna ML, Di Maio A, Arcangeletti MC, Maccari C, De Conto F, Chezzi C.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9010185},
pmid = {33467079}
}
@article{lin65007,
title = {Conserved Structural Features of Core Oligosaccharides among the Lipopolysaccharides of Respiratory Pathogens from the Genus Bordetella Analyzed Exclusively by NMR Spectroscopy.},
author = {Ucieklak K, Koj S, Niedziela T.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22031029},
pmid = {33494150}
}
@article{lin65275,
title = {Perimyocarditis as first sign of systemic onset juvenile idiopathic arthritis treated successfully with anakinra: a case-based review.},
author = {Ciancia S, Cappella M, De Fanti A, Iughetti L.},
journal = {Acta Biomed},
year = {2020},
doi = {10.23750/abm.v91i4.9093},
pmid = {33525302}
}
@article{lin65308,
title = {Mycoplasma pneumoniae may cause dyspnoea and hospitalisations in young healthy adults.},
author = {Metsala R, Ala-Korpi S, Rannikko J, Helminen M, Renko M.},
journal = {Eur J Clin Microbiol Infect Dis},
year = {2021},
doi = {10.1007/s10096-021-04171-z},
pmid = {33532945}
}
@article{lin65386,
title = {The occurrence of and risk factors for developing acute critical illness during quarantine as a response to the COVID-19 pandemic.},
author = {Tsai CS, Huang TH, Su PL, Chen CZ, Chen CW, Ko WC, Lee NY.},
journal = {J Formos Med Assoc},
year = {2022},
doi = {10.1016/j.jfma.2021.01.013},
pmid = {33551312}
}
@article{lin65328,
title = {Respiratory co-infections with COVID-19 in the Veterans Health Administration, 2020.},
author = {Schirmer P, Lucero-Obusan C, Sharma A, Sohoni P, Oda G, Holodniy M.},
journal = {Diagn Microbiol Infect Dis},
year = {2021},
doi = {10.1016/j.diagmicrobio.2021.115312},
pmid = {33561606}
}
@article{lin65312,
title = {Clonal expansion of CD4+CD8+ T cells in an adult patient with Mycoplasma pneumoniae-associated Erythema multiforme majus.},
author = {Volkers SM, Meisel C, Terhorst-Molawi D, Burbach GJ, Schurmann D, Suttorp N, Sander LE.},
journal = {Allergy Asthma Clin Immunol},
year = {2021},
doi = {10.1186/s13223-021-00520-x},
pmid = {33568212}
}
@article{lin65411,
title = {Comparison of performance between Fast Track Diagnostics Respiratory Kit and the CDC global reference laboratory for influenza rRT-PCR panel for detection of influenza A and influenza B.},
author = {Cisse A, Milucky J, Ilboudo AK, Waller JL, Bicaba B, Medah I, Mirza S, Whitney CG, Tarnagda Z.},
journal = {Influenza Other Respir Viruses},
year = {2021},
doi = {10.1111/irv.12830},
pmid = {33638312}
}
@article{lin65647,
title = {Hijacking Factor H for Complement Immune Evasion.},
author = {Moore SR, Menon SS, Cortes C, Ferreira VP.},
journal = {Front Immunol},
year = {2021},
doi = {10.3389/fimmu.2021.602277},
pmid = {33717083}
}
@article{lin65100,
title = {Pertussis among patients with clinically compatible illness in the Amhara Regional State, Ethiopia.},
author = {Taye S, Tigabu Z, Damtie D, Yismaw G, Moodley C, Nicol MP, Tessema B, Gelaw B, Moges F.},
journal = {Int J Infect Dis},
year = {2021},
doi = {10.1016/j.ijid.2021.03.073},
pmid = {33794378}
}
@article{lin65425,
title = {Factors Associated With MALDI-TOF Mass Spectral Quality of Species Identification in Clinical Routine Diagnostics.},
author = {Cuenod A, Foucault F, Pfluger V, Egli A.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.646648},
pmid = {33796488}
}
@article{lin65463,
title = {Bordetella pertussis in School-Age Children, Adolescents, and Adults: A Systematic Review of Epidemiology, Burden, and Mortality in Africa.},
author = {Macina D, Evans KE.},
journal = {Infect Dis Ther},
year = {2021},
doi = {10.1007/s40121-021-00442-6},
pmid = {33881713}
}
@article{lin65395,
title = {Severe pneumonia in a street rat (Rattus norvegicus) caused by Rodentibacter rarus strain RMC2.},
author = {Medkour H, Laidoudi Y, Dahmana H, Salvi B, Lepidi H, Mediannikov O, Davoust B.},
journal = {Open Vet J},
year = {2021},
doi = {10.4314/ovj.v11i1.24},
pmid = {33898299}
}
@article{lin65375,
title = {Microscopic Observation of SARS-Like Particles in RT-qPCR SARS-CoV-2 Positive Sewage Samples.},
author = {Brahim Belhaouari D, Wurtz N, Grimaldier C, Lacoste A, Pires de Souza GA, Penant G, Hannat S, Baudoin JP, La Scola B.},
journal = {Pathogens},
year = {2021},
doi = {10.3390/pathogens10050516},
pmid = {33923138}
}
@article{lin65310,
title = {Comparative Phosphoproteomics of Classical Bordetellae Elucidates the Potential Role of Serine, Threonine and Tyrosine Phosphorylation in Bordetella Biology and Virulence.},
author = {Luu LDW, Zhong L, Kaur S, Raftery MJ, Lan R.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.660280},
pmid = {33928046}
}
@article{lin65465,
title = {Uptake of vaccination in pregnancy.},
author = {Sebghati M, Khalil A.},
journal = {Best Pract Res Clin Obstet Gynaecol},
year = {2021},
doi = {10.1016/j.bpobgyn.2021.03.007},
pmid = {33965331}
}
@article{lin65294,
title = {Etiological distribution of pertussis-like syndrome in 756 children in Chengdu.},
author = {Liu Y, Ai T, Fan Y, Xie C, Lou R, Zeng X, Wang L, Peng Y, Chen M.},
journal = {Transl Pediatr},
year = {2021},
doi = {10.21037/tp-21-140},
pmid = {34012846}
}
@article{lin65494,
title = {Reduction of endotoxicity in Bordetella bronchiseptica by lipid A engineering: Characterization of lpxL1 and pagP mutants.},
author = {Perez-Ortega J, Van Harten RM, Van Boxtel R, Plisnier M, Louckx M, Ingels D, Haagsman HP, Tommassen J.},
journal = {Virulence},
year = {2021},
doi = {10.1080/21505594.2021.1929037},
pmid = {34053396}
}
@article{lin65288,
title = {Identification of SARS-CoV-2 and Enteroviruses in Sewage Water-A Pilot Study.},
author = {Baicus A, Cherciu CM, Lazar M.},
journal = {Viruses},
year = {2021},
doi = {10.3390/v13050844},
pmid = {34066503}
}
@article{lin65458,
title = {The African Network for Improved Diagnostics, Epidemiology and Management of common infectious Agents.},
author = {Schubert G, Achi V, Ahuka S, Belarbi E, Bourhaima O, Eckmanns T, Johnstone S, Kabore F, Kra O, Mendes A, Ouedraogo AS, Poda A, Some AS, Tomczyk S, Couacy-Hymann E, Kayembe JM, Meda N, Muyembe Tamfum JJ, Ouangraoua S, Page N, Venter M, Leendertz FH, Akoua-Koffi C, ANDEMIA consortium.},
journal = {BMC Infect Dis},
year = {2021},
doi = {10.1186/s12879-021-06238-w},
pmid = {34098893}
}
@article{lin65320,
title = {Rapid multiplex PCR assays in patients with respiratory viral infections: is semi-quantitative data useful? A pilot study.},
author = {Gazeau P, Vallet S, Ansart S, Beauruelle C, Tran-Minoui A, Payan C, Pilorge L.},
journal = {Braz J Microbiol},
year = {2021},
doi = {10.1007/s42770-021-00536-w},
pmid = {34105111}
}
@article{lin65350,
title = {The impact of pertussis in infants: insights from a hospital-based enhanced surveillance system, Lazio region, Italy, 2016 to 2019.},
author = {Pandolfi E, Gesualdo F, Rizzo C, Russo L, Campagna I, Carloni E, Concato C, Linardos G, Villani A, Ciampini S, Reale A, Boccuzzi E, Midulla F, Tozzi AE.},
journal = {Euro Surveill},
year = {2021},
doi = {10.2807/1560-7917.es.2021.26.24.2000562},
pmid = {34142648}
}
@article{lin65457,
title = {Hospital-based prospective study of pertussis in infants and close contacts in Tehran, Iran.},
author = {Noel G, Lotfi MN, Mirshahvalad S, Mahdi S, Tavel D, Zahraei SM, Ghanaie RM, Heidary T, Goudarzi A, Kazemi A, Karimi A, Nateghian A, Ait-Ahmed M, Guiso N, Shahcheraghi F, Taieb F.},
journal = {BMC Infect Dis},
year = {2021},
doi = {10.1186/s12879-021-06266-6},
pmid = {34144678}
}
@article{lin65455,
title = {Role of lung ultrasound for the etiological diagnosis of acute lower respiratory tract infection (ALRTI) in children: a prospective study.},
author = {Buonsenso D, Musolino A, Ferro V, De Rose C, Morello R, Ventola C, Liotti FM, De Sanctis R, Chiaretti A, Biasucci DG, Spanu T, Sanguinetti M, Valentini P.},
journal = {J Ultrasound},
year = {2022},
doi = {10.1007/s40477-021-00600-z},
pmid = {34146336}
}
@article{lin65517,
title = {DegP Initiates Regulated Processing of Filamentous Hemagglutinin in Bordetella bronchiseptica.},
author = {Johnson RM, Nash ZM, Dedloff MR, Shook JC, Cotter PA.},
journal = {mBio},
year = {2021},
doi = {10.1128/mbio.01465-21},
pmid = {34182780}
}
@article{lin65187,
title = {The epidemiology and etiologies of respiratory tract infection in Northern Taiwan during the early phase of coronavirus disease 2019 (COVID-19) outbreak.},
author = {Chen AP, Chuang C, Huang YC, Wu PF, Huang SF, Cheng NC, Lin YT, Chen SJ, Huang LJ, Lee CL, Chen HP, Chan YJ, Wang FD.},
journal = {J Microbiol Immunol Infect},
year = {2021},
doi = {10.1016/j.jmii.2021.05.006},
pmid = {34217634}
}
@article{lin65193,
title = {COVID-19 mRNA Vaccine and Myocarditis.},
author = {Singh B, Kaur P, Cedeno L, Brahimi T, Patel P, Virk H, Shamoon F, Bikkina M.},
journal = {Eur J Case Rep Intern Med},
year = {2021},
doi = {10.12890/2021_002681},
pmid = {34268277}
}
@article{lin65484,
title = {Modulation of the Enzymatic Activity of the Flagellar Lytic Transglycosylase SltF by Rod Components and the Scaffolding Protein FlgJ in Rhodobacter sphaeroides.},
author = {Garcia-Ramos M, de la Mora J, Ballado T, Camarena L, Dreyfus G.},
journal = {J Bacteriol},
year = {2021},
doi = {10.1128/jb.00372-21},
pmid = {34309398}
}
@article{lin65279,
title = {The Effects of Social Distancing Policies on Non-SARS-CoV-2 Respiratory Pathogens.},
author = {Nawrocki J, Olin K, Holdrege MC, Hartsell J, Meyers L, Cox C, Powell M, Cook CV, Jones J, Robbins T, Hemmert A, Ginocchio CC.},
journal = {Open Forum Infect Dis},
year = {2021},
doi = {10.1093/ofid/ofab133},
pmid = {34322558}
}
@article{lin65547,
title = {Presence of 2-hydroxymyristate on endotoxins is associated with death in neonates with Enterobacter cloacae complex septic shock.},
author = {Augusto LA, Bourgeois-Nicolaos N, Breton A, Barreault S, Alonso EH, Gera S, Faraut-Derouin V, Semaan N, De Luca D, Chaby R, Doucet-Populaire F, Tissieres P.},
journal = {iScience},
year = {2021},
doi = {10.1016/j.isci.2021.102916},
pmid = {34409274}
}
@article{lin65541,
title = {Swab and Sputum SARS-CoV-2 RNA-Negative, CT-Positive, Symptomatic Contacts of COVID-19 Cases: A Hypothesis-Generating Prospective Population-Based Cohort Study of Eight Clusters.},
author = {Huang L, Zhang X, Zhang L, Xu J, Wei Z, Xu Y, Zhang C, Xu A.},
journal = {Front Med (Lausanne)},
year = {2021},
doi = {10.3389/fmed.2021.685544},
pmid = {34485329}
}
@article{lin65378,
title = {Respiratory etiological surveillance among quarantined patients with suspected lower respiratory tract infection at a medical center in southern Taiwan during COVID-19 pandemic.},
author = {Huang CP, Tsai CS, Su PL, Huang TH, Ko WC, Lee NY.},
journal = {J Microbiol Immunol Infect},
year = {2022},
doi = {10.1016/j.jmii.2021.07.009},
pmid = {34509393}
}
@article{lin65087,
title = {Pertussis vaccination in pregnancy - current data on safety and effectiveness.},
author = {Zasztowt-Sternicka M, Jagielska AM, Nitsch-Osuch AS.},
journal = {Ginekol Pol},
year = {2021},
doi = {10.5603/gp.a2021.0145},
pmid = {34541632}
}
@article{lin65243,
title = {Identification of BvgA-Dependent and BvgA-Independent Small RNAs (sRNAs) in Bordetella pertussis Using the Prokaryotic sRNA Prediction Toolkit ANNOgesic.},
author = {Moon K, Sim M, Tai CH, Yoo K, Merzbacher C, Yu SH, Kim DD, Lee J, Forstner KU, Chen Q, Stibitz S, Knipling LG, Hinton DM.},
journal = {Microbiol Spectr},
year = {2021},
doi = {10.1128/spectrum.00044-21},
pmid = {34550019}
}
@article{lin65486,
title = {Pathogenicity and virulence of Bordetella pertussis and its adaptation to its strictly human host.},
author = {Belcher T, Dubois V, Rivera-Millot A, Locht C, Jacob-Dubuisson F.},
journal = {Virulence},
year = {2021},
doi = {10.1080/21505594.2021.1980987},
pmid = {34590541}
}
@article{lin65319,
title = {What happened to microbiological diagnosis in 2020 beyond COVID-19?},
author = {Cercenado E.},
journal = {Rev Esp Quimioter},
year = {2021},
doi = {10.37201/req/s01.01.2021},
pmid = {34598413}
}
@article{lin65174,
title = {Melanin Produced by Bordetella parapertussis Confers a Survival Advantage to the Bacterium during Host Infection.},
author = {Hiramatsu Y, Nishida T, Nugraha DK, Sugihara F, Horiguchi Y.},
journal = {mSphere},
year = {2021},
doi = {10.1128/msphere.00819-21},
pmid = {34643424}
}
@article{lin65127,
title = {COVID-19 Restrictions Are Associated With a Significant Decrease of All Common Respiratory Viral Illnesses in Children.},
author = {Randall MM, Despujos Harfouche F, Raae-Nielsen J, Chen BG, Chen M, Brown LA.},
journal = {Clin Pediatr (Phila)},
year = {2022},
doi = {10.1177/00099228211044842},
pmid = {34643469}
}
@article{lin65468,
title = {Study of the Etiology of Acute Respiratory Infections in Children Under 5 Years at the Dr. Agostinho Neto Hospital, Praia, Santiago Island, Cabo Verde.},
author = {Correia W, Dorta-Guerra R, Sanches M, Almeida Semedo CJB, Valladares B, de Pina-Araujo IIM, Carmelo E.},
journal = {Front Pediatr},
year = {2021},
doi = {10.3389/fped.2021.716351},
pmid = {34650939}
}
@article{lin65150,
title = {JMM Profile: Bordetella pertussis and whooping cough (pertussis): still a significant cause of infant morbidity and mortality, but vaccine-preventable.},
author = {Fry NK, Campbell H, Amirthalingam G.},
journal = {J Med Microbiol},
year = {2021},
doi = {10.1099/jmm.0.001442},
pmid = {34668853}
}
@article{lin65331,
title = {Detection of respiratory pathogens by application of multiplex PCR panel during early period of COVID-19 pandemic in a tertiary hospital in Central Taiwan.},
author = {Chiu YT, Tien N, Lin HC, Wei HM, Lai HC, Chen JA, Low YY, Lin HH, Hsu YL, Hwang KP.},
journal = {J Microbiol Immunol Infect},
year = {2022},
doi = {10.1016/j.jmii.2021.09.011},
pmid = {34674956}
}
@article{lin65130,
title = {Reactive infectious mucocutaneous eruption secondary to SARS-CoV-2.},
author = {Ryder CY, Pedersen EA, Mancuso JB.},
journal = {JAAD Case Rep},
year = {2021},
doi = {10.1016/j.jdcr.2021.10.007},
pmid = {34692963}
}
@article{lin65389,
title = {fIDBAC: A Platform for Fast Bacterial Genome Identification and Typing.},
author = {Liang Q, Liu C, Xu R, Song M, Zhou Z, Li H, Dai W, Yang M, Yu Y, Chen H.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.723577},
pmid = {34733246}
}
@article{lin65269,
title = {Respiratory Infections in Children During a Covid-19 Pandemic Winter.},
author = {Diesner-Treiber SC, Voitl P, Voitl JJM, Langer K, Kuzio U, Riepl A, Patel P, Muhl-Riegler A, Muhl B.},
journal = {Front Pediatr},
year = {2021},
doi = {10.3389/fped.2021.740785},
pmid = {34733808}
}
@article{lin65262,
title = {Thyroid as a target of adjuvant autoimmunity/inflammatory syndrome due to mRNA-based SARS-CoV2 vaccination: from Graves' disease to silent thyroiditis.},
author = {Pujol A, Gomez LA, Gallegos C, Nicolau J, Sanchis P, Gonzalez-Freire M, Lopez-Gonzalez AA, Dotres K, Masmiquel L.},
journal = {J Endocrinol Invest},
year = {2022},
doi = {10.1007/s40618-021-01707-0},
pmid = {34792795}
}
@article{lin65225,
title = {Clinical features of respiratory syncytial virus bronchiolitis in an infant: rapid and fatal brain involvement.},
author = {Bottino P, Miglino R, Pastrone L, Barbui AM, Botta G, Zanotto E, Sidoti F, Costa C, Cavallo R.},
journal = {BMC Pediatr},
year = {2021},
doi = {10.1186/s12887-021-03045-9},
pmid = {34886830}
}
@article{lin65297,
title = {Bordetella bronchiseptica infections in patients with HIV/AIDS: A case report and review of the literature.},
author = {Gujju VR, Akram B, Shibib DR, McGhee MA, Drevets DA.},
journal = {Medicine (Baltimore)},
year = {2021},
doi = {10.1097/md.0000000000028244},
pmid = {34941094}
}
@article{lin65435,
title = {Effects of race on the outcome of COVID-19 in hospitalized patients.},
author = {Abate G, Kapoor A, Charbek E, Beck B, Wang Q, Wang GC, Steck M, Zoglman J, Chambeg RR, Frey S, Hoft DF, Wiemken TL.},
journal = {J Natl Med Assoc},
year = {2022},
doi = {10.1016/j.jnma.2021.12.002},
pmid = {35012764}
}
@article{lin65434,
title = {Rapid syndromic PCR testing in patients with respiratory tract infections reduces time to results and improves microbial yield.},
author = {Serigstad S, Markussen D, Grewal HMS, Ebbesen M, Kommedal O, Heggelund L, van Werkhoven CH, Faurholt-Jepsen D, Clark TW, Ritz C, Ulvestad E, Bjorneklett R, Knoop ST, CAPNOR Study Group.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-021-03741-7},
pmid = {35013351}
}
@article{lin65475,
title = {Direct detection of SARS-CoV-2 RNA using high-contrast pH-sensitive dyes.},
author = {Brown TA, Schaefer KS, Tsang A, Yi HA, Grimm JB, Lemire AL, Jradi FM, Kim C, McGowan K, Ritola K, Armstrong DT, Mostafa HH, Korff W, Vale RD, Lavis LD.},
journal = {J Biomol Tech},
year = {2021},
doi = {10.7171/jbt.21-3203-007},
pmid = {35027870}
}
@article{lin65165,
title = {COVID-19 associated Kawasaki-like multisystem inflammatory syndrome in an adult.},
author = {Elouardi Y, Rebahi H, Zarrouki Y, Ziadi A, Younous S, Samkaoui MA.},
journal = {Rev Esp Anestesiol Reanim (Engl Ed)},
year = {2022},
doi = {10.1016/j.redare.2020.11.009},
pmid = {35031265}
}
@article{lin65423,
title = {Pneumocystis spp. in Pigs: A Longitudinal Quantitative Study and Co-Infection Assessment in Austrian Farms.},
author = {Blasi B, Sipos W, Knecht C, Durlinger S, Ma L, Cisse OH, Nedorost N, Matt J, Weissenbock H, Weissenbacher-Lang C.},
journal = {J Fungi (Basel)},
year = {2021},
doi = {10.3390/jof8010043},
pmid = {35049984}
}
@article{lin65432,
title = {Studying the clinical, radiological, histological, microbiological, and immunological evolution during the different COVID-19 disease stages using minimal invasive autopsy.},
author = {D'Onofrio V, Keulen L, Vandendriessche A, Dubois J, Cartuyvels R, Vanden Abeele ME, Fraussen J, Vandormael P, Somers V, Achten R, Dendooven A, Driessen A, Augsburg L, Hellings N, Lammens M, Vanrusselt J, Cox J.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-05186-y},
pmid = {35079048}
}
@article{lin65393,
title = {Tatajuba: exploring the distribution of homopolymer tracts.},
author = {de Oliveira Martins L, Bloomfield S, Stoakes E, Grant AJ, Page AJ, Mather AE.},
journal = {NAR Genom Bioinform},
year = {2022},
doi = {10.1093/nargab/lqac003},
pmid = {35118377}
}
@article{lin65268,
title = {Pertussis outbreak investigation in Northwest Ethiopia: A community based study.},
author = {Yeshanew AG, Lankir D, Wondimu J, Solomon S.},
journal = {PLoS One},
year = {2022},
doi = {10.1371/journal.pone.0263708},
pmid = {35143575}
}
@article{lin65244,
title = {Contribution of Uremia to Ureaplasma-Induced Hyperammonemia.},
author = {Fleming D, Cunningham SA, Patel R.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.01942-21},
pmid = {35171026}
}
@article{lin65285,
title = {Modeling the catarrhal stage of Bordetella pertussis upper respiratory tract infections in mice.},
author = {Soumana IH, Dewan KK, Linz B, Rivera I, Ma L, Howard LK, Caulfield AD, Sedney CJ, Blas-Machado U, Sebo P, Harvill ET.},
journal = {Dis Model Mech},
year = {2022},
doi = {10.1242/dmm.049266},
pmid = {35311902}
}
@article{lin65062,
title = {Pseudo-Outbreak of Bordetella parapertussis Caused by Contaminated Swabs in the Netherlands.},
author = {Flipse J, Tromp AT, Bosman J, Ten Hove C, Beks H, Kortbeek T, Bastiaens GJH, Mascini EM.},
journal = {Emerg Infect Dis},
year = {2022},
doi = {10.3201/eid2804.212097},
pmid = {35318925}
}
@article{lin65179,
title = {The neglected pathogen: case reports of severe lower respiratory tract infection by human coronavirus 229E.},
author = {Paul D, Gupta A, Bhatia V, Gupta E.},
journal = {Access Microbiol},
year = {2022},
doi = {10.1099/acmi.0.000311},
pmid = {35355879}
}
@article{lin65137,
title = {Spread of Respiratory Pathogens During the COVID-19 Pandemic Among Children in the Northeast of Italy.},
author = {Cason C, Zamagni G, Cozzi G, Tonegutto D, Ronfani L, Oretti C, De Manzini A, Barbi E, Comar M, Amaddeo A.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.804700},
pmid = {35401434}
}
@article{lin65005,
title = {Laboratory and epidemiology data of pertussis cases and close contacts: A 5-year case-based surveillance of pertussis in Indonesia, 2016-2020.},
author = {Sunarno S, Sofiah SN, Amalia N, Hartoyo Y, Rizki A, Puspandari N, Saraswati RD, Febriyana D, Febrianti T, Susanti I, Khariri K, Sariadji K, Muna F, Rukminiati Y, Sulistyaningrum N, Riana DA, Maha MS, Fitriana F, Voronika V, Muslih M, Kamal M, Setiawaty V.},
journal = {PLoS One},
year = {2022},
doi = {10.1371/journal.pone.0266033},
pmid = {35442946}
}
@article{lin65300,
title = {Circulating pediatric respiratory pathogens in Taiwan during 2020: Dynamic change under low COVID-19 incidence.},
author = {Sim JY, Chen YC, Hsu WY, Chen WY, Chou Y, Chow JC, Lai YC, Tang HJ, Chen CC, Ho CH, Chang TH.},
journal = {J Microbiol Immunol Infect},
year = {2022},
doi = {10.1016/j.jmii.2022.03.005},
pmid = {35450828}
}
@article{lin65341,
title = {Characteristics and outcomes of ambulatory patients with suspected COVID-19 at a respiratory referral center.},
author = {Guntur VP, Modena BD, Manka LA, Eddy JJ, Liao SY, Goldstein NM, Zelarney P, Horn CA, Keith RC, Make BJ, Petrache I, Wechsler ME.},
journal = {Respir Med},
year = {2022},
doi = {10.1016/j.rmed.2022.106832},
pmid = {35462298}
}
@article{lin65220,
title = {Transient severe myocarditis and intraventricular thrombus associated with SARS-CoV-2 vaccination.},
author = {Loch A, Siew KSW, Tan KL, Azman Bin Raja Aman RRAB.},
journal = {Singapore Med J},
year = {2023},
doi = {10.11622/smedj.2022042},
pmid = {35509213}
}
@article{lin65180,
title = {Croup Associated With SARS-CoV-2: Pediatric Laryngotracheitis During the Omicron Surge.},
author = {Sharma S, Agha B, Delgado C, Walson K, Woods C, Gonzalez MD, Jerris R, Sysyn G, Beiter J, Kamidani S, Rostad CA.},
journal = {J Pediatric Infect Dis Soc},
year = {2022},
doi = {10.1093/jpids/piac032},
pmid = {35512450}
}
@article{lin65176,
title = {Prognostic value of upper respiratory tract microbes in children presenting to primary care with respiratory infections: A prospective cohort study.},
author = {McGeoch LJ, Thornton HV, Blair PS, Christensen H, Turner NL, Muir P, Vipond B, Redmond NM, Turnbull S, Hay AD.},
journal = {PLoS One},
year = {2022},
doi = {10.1371/journal.pone.0268131},
pmid = {35552562}
}
@article{lin65355,
title = {Clinical evaluation of a new rapid immunochromatographic test for detection of Bordetella pertussis antigen.},
author = {Okada K, Horikoshi Y, Nishimura N, Ishii S, Nogami H, Motomura C, Miyairi I, Tsumura N, Mori T, Ito K, Honma S, Nagai K, Tanaka H, Hayakawa T, Abe C, Ouchi K.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-11933-y},
pmid = {35577904}
}
@article{lin65544,
title = {Cyclic di-GMP Regulates the Type III Secretion System and Virulence in Bordetella bronchiseptica.},
author = {Gutierrez MP, Wong TY, Damron FH, Fernandez J, Sisti F.},
journal = {Infect Immun},
year = {2022},
doi = {10.1128/iai.00107-22},
pmid = {35612302}
}
@article{lin65292,
title = {Changes in the Circulation of Common Respiratory Pathogens among Hospitalized Patients with Influenza-like Illnesses in the Lazio Region (Italy) during Fall Season of the Past Three Years.},
author = {Sberna G, Lalle E, Valli MB, Bordi L, Garbuglia AR, Amendola A.},
journal = {Int J Environ Res Public Health},
year = {2022},
doi = {10.3390/ijerph19105962},
pmid = {35627498}
}
@article{lin65132,
title = {Reduction and persistence of co-circulating respiratory viruses during the SARS-CoV-2 pandemic.},
author = {Smedberg JR, DiBiase LM, Hawken SE, Allen A, Mohan S, Santos C, Smedberg T, Barzin AH, Wohl DA, Miller MB.},
journal = {Am J Infect Control},
year = {2022},
doi = {10.1016/j.ajic.2022.06.008},
pmid = {35709970}
}
@article{lin65233,
title = {Automatic Identification of MALDI-TOF MS Database Using Classical Bordetella Species Isolates.},
author = {Liu Y, Cui J, Qie C, Jiang B, Li Y, Zhao X.},
journal = {Comput Math Methods Med},
year = {2022},
doi = {10.1155/2022/1679951},
pmid = {35756428}
}
@article{lin65134,
title = {Fatal Gets More Fatal: A COVID-19 Infection With Macrophage Activation Syndrome.},
author = {Aydin Y, Vemuri B, Vajta Gomez JP, Challa PK, Zhang H.},
journal = {Cureus},
year = {2022},
doi = {10.7759/cureus.25591},
pmid = {35795500}
}
@article{lin65478,
title = {Nasal-spraying Bacillus spores as an effective symptomatic treatment for children with acute respiratory syncytial virus infection.},
author = {Tran DM, Tran TT, Phung TTB, Bui HT, Nguyen PTT, Vu TT, Ngo NTP, Nguyen MT, Nguyen AH, Nguyen ATV.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-16136-z},
pmid = {35858943}
}
@article{lin65885,
title = {Controlled Human Infection Models To Accelerate Vaccine Development.},
author = {Choy RKM, Bourgeois AL, Ockenhouse CF, Walker RI, Sheets RL, Flores J.},
journal = {Clin Microbiol Rev},
year = {2022},
doi = {10.1128/cmr.00008-21},
pmid = {35862754}
}
@article{lin65436,
title = {Performance of 22 Rapid Lateral Flow Tests for SARS-CoV-2 Antigen Detection and Influence of "Variants of Concern": Implications for Clinical Use.},
author = {Gourgeon A, Soulier A, Audureau E, Khouider S, Galbin A, Langlois C, Bouvier-Alias M, Rodriguez C, Chevaliez S, Pawlotsky JM, Fourati S.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.01157-22},
pmid = {35862982}
}
@article{lin65344,
title = {Characterization of Bordetella pertussis Strains Isolated from India.},
author = {Alai S, Gautam M, Palkar S, Oswal J, Gairola S, Dhotre DP.},
journal = {Pathogens},
year = {2022},
doi = {10.3390/pathogens11070794},
pmid = {35890038}
}
@article{lin65333,
title = {Impact of rapid molecular testing on diagnosis, treatment and management of community-acquired pneumonia in Norway: a pragmatic randomised controlled trial (CAPNOR).},
author = {Serigstad S, Ritz C, Faurholt-Jepsen D, Markussen D, Ebbesen MH, Kommedal O, Bjorneklett RO, Heggelund L, Clark TW, van Werkhoven CH, Knoop ST, Ulvestad E, Grewal HMS, CAPNOR study group.},
journal = {Trials},
year = {2022},
doi = {10.1186/s13063-022-06467-7},
pmid = {35915452}
}
@article{lin65228,
title = {Respiratory pathogens during the COVID-19 pandemic: Alterations in detection and seasonality in Nashville, Tennessee.},
author = {Haddadin Z, Spieker AJ, Rahman H, Rankin DA, Talj R, Yanis A, Amarin JZ, Schmitz J, Chappell J, Halasa NB.},
journal = {PLoS One},
year = {2022},
doi = {10.1371/journal.pone.0270469},
pmid = {35921608}
}
@article{lin65117,
title = {Genomic and transcriptomic variation in Bordetella spp. following induction of erythromycin resistance.},
author = {Fong W, Timms V, Sim E, Pey K, Nguyen T, Sintchenko V.},
journal = {J Antimicrob Chemother},
year = {2022},
doi = {10.1093/jac/dkac272},
pmid = {35971665}
}
@article{lin65128,
title = {Rhabdomyolysis after BNT162b2 mRNA Covid-19 vaccine in an adolescent male.},
author = {Sutcu M, Gul D, Atik F, Kara M.},
journal = {Malawi Med J},
year = {2022},
doi = {10.4314/mmj.v34i2.13},
pmid = {35991822}
}
@article{lin65141,
title = {Changing Epidemiology of Acute Viral Respiratory Infections in Hospitalized Children: The Post-Lockdown Effect.},
author = {Maglione M, Pascarella A, Botti C, Ricci G, Morelli F, Camelia F, Micillo A, Cali C, Savoia F, Tipo V, Giannattasio A.},
journal = {Children (Basel)},
year = {2022},
doi = {10.3390/children9081242},
pmid = {36010132}
}
@article{lin65431,
title = {Epidemiologic and clinical characteristics of human bocavirus infection in children hospitalized for acute respiratory tract infection in Qingdao, China.},
author = {Wang W, Guan R, Liu Z, Zhang F, Sun R, Liu S, Shi X, Su Z, Liang R, Hao K, Wang Z, Liu X.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.935688},
pmid = {36033842}
}
@article{lin65071,
title = {Genome Characteristic of Bordetella parapertussis Isolated from Iran.},
author = {Safarchi A, Saedi S, Tay CY, Lamichhane B, Nakhost Lotfi M, Shahcheraghi F.},
journal = {Curr Microbiol},
year = {2022},
doi = {10.1007/s00284-022-03009-x},
pmid = {36088519}
}
@article{lin65293,
title = {Pertussis Prevalence in Adult Population in Greece: A Seroprevalence Nationwide Study.},
author = {Papagiannis D, Thireos E, Mariolis A, Katsioulis A, Gartzonika K, Malliaraki N, Agnantis C, Tsaras K, Malli F, Rouka EC, Tsiaousi I, Symvoulakis EK, Rachiotis G, Gourgoulianis KI.},
journal = {Vaccines (Basel)},
year = {2022},
doi = {10.3390/vaccines10091511},
pmid = {36146589}
}
@article{lin65316,
title = {Multiplex PCR Detection of Respiratory Tract Infections in SARS-CoV-2-Negative Patients Admitted to the Emergency Department: an International Multicenter Study during the COVID-19 Pandemic.},
author = {Duclos M, Hommel B, Allantaz F, Powell M, Posteraro B, Sanguinetti M.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02368-22},
pmid = {36154273}
}
@article{lin65103,
title = {Invasive Bordetella pertussis Infection in Infants: A Case Report.},
author = {Liao Y, Li WR, Zhu Y, Luo SH, Liao Q, Wan CM.},
journal = {Open Forum Infect Dis},
year = {2022},
doi = {10.1093/ofid/ofac478},
pmid = {36225748}
}
@article{lin65366,
title = {The Etiology of Community-Acquired Pneumonia Correlates with Serum Inflammatory Markers in Children.},
author = {Wrotek A, Robakiewicz J, Pawlik K, Rudzinski P, Pilarska I, Jaron A, Imielowska A, Jarzebowska M, Zablocka K, Jackowska T.},
journal = {J Clin Med},
year = {2022},
doi = {10.3390/jcm11195506},
pmid = {36233374}
}
@article{lin65151,
title = {Pertussis prevalence among adult patients with acute cough.},
author = {Ilbay A, Tanriover MD, Zarakol P, Guzelce EC, Bolek H, Unal S.},
journal = {Turk J Med Sci},
year = {2022},
doi = {10.55730/1300-0144.5349},
pmid = {36326303}
}
@article{lin65211,
title = {Distribution of Viral Respiratory Infections during the COVID-19 Pandemic Using the FilmArray Respiratory Panel.},
author = {Chen YJ, Er TK.},
journal = {Biomedicines},
year = {2022},
doi = {10.3390/biomedicines10112734},
pmid = {36359254}
}
@article{lin65177,
title = {Profile of Co-Infection Prevalence and Antibiotics Use among COVID-19 Patients.},
author = {Greco R, Panetta V, Della Rocca MT, Durante A, Di Caprio G, Maggi P.},
journal = {Pathogens},
year = {2022},
doi = {10.3390/pathogens11111250},
pmid = {36365001}
}
@article{lin65170,
title = {Comparison of the BioFire Joint Infection Panel to 16S Ribosomal RNA Gene-Based Targeted Metagenomic Sequencing for Testing Synovial Fluid from Patients with Knee Arthroplasty Failure.},
author = {Azad MA, Wolf MJ, Strasburg AP, Daniels ML, Starkey JC, Donadio AD, Abdel MP, Greenwood-Quaintance KE, Patel R.},
journal = {J Clin Microbiol},
year = {2022},
doi = {10.1128/jcm.01126-22},
pmid = {36409108}
}
@article{lin65239,
title = {Investigation of respiratory tract coinfections in Coronavirus disease 2019 infected and suspected cases.},
author = {Yilmaz H, Irvem A, Guner AE, Kazezoglu C, Kocatas A.},
journal = {North Clin Istanb},
year = {2022},
doi = {10.14744/nci.2022.82608},
pmid = {36447585}
}
@article{lin65045,
title = {Bordetella parapertussis adenylate cyclase toxin promotes the bacterial survival to the encounter with macrophages.},
author = {Carrica MDC, Gorgojo JP, Lamberti YA, Valdez HA, Rodriguez ME.},
journal = {Microb Pathog},
year = {2023},
doi = {10.1016/j.micpath.2022.105898},
pmid = {36460144}
}
@article{lin65415,
title = {Divergent dynamics of inflammatory mediators and multiplex PCRs during airway infection in cystic fibrosis patients and healthy controls: Serial upper airway sampling by nasal lavage.},
author = {Erdmann N, Schilling T, Hentschel J, Lehmann T, von Bismarck P, Ankermann T, Duckstein F, Baier M, Zagoya C, Mainz JG.},
journal = {Front Immunol},
year = {2022},
doi = {10.3389/fimmu.2022.947359},
pmid = {36466839}
}
@article{lin65169,
title = {Seroepidemiology of pertussis in the east of China: Estimates of incidence of infection in adolescents and adults pre- and post-COVID-19.},
author = {Chen Q, Wang W, Shi X, Xu Y, Zhu Y, Wu Y, Wang Z, Sun H, Sun X.},
journal = {Front Public Health},
year = {2022},
doi = {10.3389/fpubh.2022.1054617},
pmid = {36530663}
}
@article{lin65403,
title = {Risk Factors of Pertussis Among Older Adults in South Korea: A Nationwide Health Data-Based Case-Control Study.},
author = {Kim H, Shin JY, Chen J, Kim JH, Noh Y, Cheong HJ, Oh YM, Guignard A, Shantakumar S.},
journal = {Infect Dis Ther},
year = {2023},
doi = {10.1007/s40121-022-00747-0},
pmid = {36588139}
}
@article{lin65271,
title = {Evaluation of BioFire Respiratory Panel 2 plus for Detection of Bordetella pertussis in Nasopharyngeal Swab Specimens from Children with Clinically Suspected Pertussis.},
author = {Li C, Huang C, Zhang R, Wang H, Tian S, Tang YW, Deng J.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.01806-22},
pmid = {36602355}
}
@article{lin65245,
title = {Frequency and Seasonal Variations of Viruses Causing Respiratory Tract Infections in Children Pre- and Post-COVID-19 Pandemic in Riyadh (2017-2022).},
author = {Alaib H, Algariri N, Ahmed H, Bebars A, Alamri F, Durmush R, Ayaz M, Hamadelnil W, Alboriaki B, Altamimi B, Alalyani M, Aljasser DS, Aboud M.},
journal = {Cureus},
year = {2023},
doi = {10.7759/cureus.33467},
pmid = {36628396}
}
@article{lin65291,
title = {Metagenome analyses of microbial population in geotextile fabrics used in permeable reactor barriers for toluene biodegradation.},
author = {Tombuloglu H, Yaman C, Boudellioua I, Cevik E, Anil I, Aga O, Yaman AB, Qureshi A, Gunday ST.},
journal = {3 Biotech},
year = {2023},
doi = {10.1007/s13205-023-03460-y},
pmid = {36636577}
}
@article{lin65426,
title = {Starting from scratch: Step-by-step development of diagnostic tests for SARS-CoV-2 detection by RT-LAMP.},
author = {Tapia-Sidas DA, Vargas-Hernandez BY, Ramirez-Pool JA, Nunez-Munoz LA, Calderon-Perez B, Gonzalez-Gonzalez R, Brieba LG, Lira-Carmona R, Ferat-Osorio E, Lopez-Macias C, Ruiz-Medrano R, Xoconostle-Cazares B.},
journal = {PLoS One},
year = {2023},
doi = {10.1371/journal.pone.0279681},
pmid = {36701313}
}
@article{lin65287,
title = {The surge of RSV and other respiratory viruses among children during the second COVID-19 pandemic winter season.},
author = {Riepl A, Strassmayr L, Voitl P, Ehlmaier P, Voitl JJM, Langer K, Kuzio U, Muhl-Riegler A, Muhl B, Diesner-Treiber SC.},
journal = {Front Pediatr},
year = {2023},
doi = {10.3389/fped.2023.1112150},
pmid = {36816380}
}
@article{lin65190,
title = {Metagenomics next-generation sequencing assists in the diagnosis of infant pertussis encephalopathy: A case report.},
author = {Zhang H, Wang X, Xia H, Liu Z.},
journal = {Medicine (Baltimore)},
year = {2023},
doi = {10.1097/md.0000000000033080},
pmid = {36827038}
}
@article{lin65282,
title = {Overruling of Procalcitonin-Guided Antibiotics for Lower Respiratory Tract Infections in Primary Care: Ancillary Study of a Randomized Controlled Trial.},
author = {Knusli J, Lhopitallier L, Kronenberg A, Meuwly JY, Opota O, Perrenoud MA, Page MA, Kain KC, Mamin A, D'Acremont V, Senn N, Mueller Y, Locatelli I, Boillat-Blanco N.},
journal = {Antibiotics (Basel)},
year = {2023},
doi = {10.3390/antibiotics12020377},
pmid = {36830288}
}
@article{lin65387,
title = {Characteristics, Outcomes, and Factors Affecting Mortality in Hospitalized Patients with CAP Due to Different Variants of SARS-CoV-2 and Non-COVID-19 CAP.},
author = {Tongsengkee N, Surasombatpattana S, Tanomkiat W, Siripaitoon P, Kositpantawong N, Kanchanasuwan S, Navasakulpong A, Pinpathomrat N, Dechaphunkul A, Phongphithakchai A, Hortiwakul T, Charoenmak B, Chusri S.},
journal = {J Clin Med},
year = {2023},
doi = {10.3390/jcm12041388},
pmid = {36835923}
}
@article{lin65338,
title = {Whole-Genome Analysis of Influenza A(H3N2) and B/Victoria Viruses Detected in Myanmar during the COVID-19 Pandemic in 2021.},
author = {Chon I, Saito R, Kyaw Y, Aye MM, Setk S, Phyu WW, Wagatsuma K, Li J, Sun Y, Otoguro T, Win SMK, Yoshioka S, Win NC, Ja LD, Tin HH, Watanabe H.},
journal = {Viruses},
year = {2023},
doi = {10.3390/v15020583},
pmid = {36851797}
}
@article{lin65186,
title = {Epidemiology and molecular characteristics of respiratory syncytial virus (RSV) among italian community-dwelling adults, 2021/22 season.},
author = {Panatto D, Domnich A, Lai PL, Ogliastro M, Bruzzone B, Galli C, Stefanelli F, Pariani E, Orsi A, Icardi G.},
journal = {BMC Infect Dis},
year = {2023},
doi = {10.1186/s12879-023-08100-7},
pmid = {36882698}
}
@article{lin65212,
title = {Probable enterotoxin-associated toxic shock syndrome caused by Staphylococcus epidermidis.},
author = {Pomputius WF, Kilgore SH, Schlievert PM.},
journal = {BMC Pediatr},
year = {2023},
doi = {10.1186/s12887-023-03914-5},
pmid = {36882717}
}
@article{lin65069,
title = {Epidemiology of respiratory tract infections using multiplex PCR in a Japanese acute care hospital during the COVID19 pandemic.},
author = {Kitagawa D, Kitano T, Furumori M, Suzuki S, Shintani Y, Suzuki Y, Nakano A, Nakano R, Nishiyama A, Yoshida S, Yano H, Maeda K, Nakamura F.},
journal = {Heliyon},
year = {2023},
doi = {10.1016/j.heliyon.2023.e14424},
pmid = {36919088}
}
@article{lin65382,
title = {A pangenome approach-based loop-mediated isothermal amplification assay for the specific and early detection of Bordetella pertussis.},
author = {Juscamayta-Lopez E, Valdivia F, Soto MP, Nurena B, Horna H.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-29773-9},
pmid = {36928221}
}
@article{lin65533,
title = {Pasteurian Contributions to the Study of Bordetella pertussis Toxins.},
author = {Locht C.},
journal = {Toxins (Basel)},
year = {2023},
doi = {10.3390/toxins15030176},
pmid = {36977067}
}
@article{lin65194,
title = {Unilateral Pleural Effusion after Third Dose of BNT162b2 mRNA Vaccination: Case Report.},
author = {Athanasiou NK, Antonoglou A, Ioannou M, Jahaj E, Katsaounou P.},
journal = {J Pers Med},
year = {2023},
doi = {10.3390/jpm13030391},
pmid = {36983574}
}
@article{lin65236,
title = {Shine: A novel strategy to extract specific, sensitive and well-conserved biomarkers from massive microbial genomic datasets.},
author = {Ji C, Shao J.},
journal = {BMC Bioinformatics},
year = {2023},
doi = {10.1186/s12859-023-05195-2},
pmid = {37016282}
}
@article{lin65183,
title = {Identification of priority pathogens for aetiological diagnosis in adults with community-acquired pneumonia in China: a multicentre prospective study.},
author = {Zhang L, Xiao Y, Zhang G, Li H, Zhao J, Chen M, Chen F, Liu L, Li Y, Peng L, Zhao F, Yang D, Wen Z, Wu L, Wu S, Sun Y, Wang Y, Chen L, Wang X, Wang L, Li W, Qiu H, Chen Y, Gao Z, Ren L, Wang J.},
journal = {BMC Infect Dis},
year = {2023},
doi = {10.1186/s12879-023-08166-3},
pmid = {37059987}
}
@article{lin65184,
title = {Bordetella spp. utilize the type 3 secretion system to manipulate the VIP/VPAC2 signaling and promote colonization and persistence of the three classical Bordetella in the lower respiratory tract.},
author = {First NJ, Pedreira-Lopez J, San-Silvestre MRF, Parrish KM, Lu XH, Gestal MC.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1111502},
pmid = {37065208}
}
@article{lin65274,
title = {Effect of non-pharmaceutical interventions on the incidence of respiratory viruses at a tertiary cancer care center.},
author = {Clark B, Cintron M, Kamboj M, Babady NE.},
journal = {J Clin Virol},
year = {2023},
doi = {10.1016/j.jcv.2023.105442},
pmid = {37075690}
}
@article{lin65295,
title = {What to Do with the New Antibiotics?},
author = {Chaibi K, Jaureguy F, Do Rego H, Ruiz P, Mory C, El Helali N, Mrabet S, Mizrahi A, Zahar JR, Pilmis B.},
journal = {Antibiotics (Basel)},
year = {2023},
doi = {10.3390/antibiotics12040654},
pmid = {37107016}
}
@article{lin65248,
title = {Fungal Pathogens as Causes of Acute Respiratory Illness in Hospitalized Veterans: Frequency of Fungal Positive Test Results Using Rapid Immunodiagnostic Assays.},
author = {Caceres DH, Rodriguez-Barradas MC, Whitaker M, Jackson BR, Kim L, Surie D, Cikesh B, Lindsley MD, McCotter OZ, Berkow EL, Toda M.},
journal = {J Fungi (Basel)},
year = {2023},
doi = {10.3390/jof9040456},
pmid = {37108910}
}
@article{lin65086,
title = {Significant impact of COVID-19 pandemic on the circulation of respiratory viruses in Tunisia, 2020-2021.},
author = {Taktak A, Smaoui F, Chtourou A, Maaloul M, Karray-Hakim H, Hammami A, Fki-Berrajah L, Gargouri S.},
journal = {Clin Epidemiol Glob Health},
year = {2023},
doi = {10.1016/j.cegh.2023.101306},
pmid = {37131909}
}
@article{lin65227,
title = {DNA microarrays to identify etiological agents, as sensors of environmental wellbeing.},
author = {Arena-Ortiz ML, Sanchez-Rodriguez EC, Apodaca-Hernandez JE, Ortiz-Alcantara JM, Rios-Contreras K, Chiappa-Carrara X.},
journal = {Front Bioeng Biotechnol},
year = {2023},
doi = {10.3389/fbioe.2023.1085976},
pmid = {37168612}
}
@article{lin65135,
title = {Mix24X, a Lab-Assembled Reference to Evaluate Interpretation Procedures for Tandem Mass Spectrometry Proteotyping of Complex Samples.},
author = {Mappa C, Alpha-Bazin B, Pible O, Armengaud J.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24108634},
pmid = {37239979}
}
@article{lin65313,
title = {Viral Pneumonia during the COVID-19 Pandemic, 2019-2021 Evoking Needs for SARS-CoV-2 and Additional Vaccinations.},
author = {Lin SC, Wang HC, Lin WC, Kuo YT, Hsu YH, Tsai YT, Lu SC, Wang YH, Chen SY.},
journal = {Vaccines (Basel)},
year = {2023},
doi = {10.3390/vaccines11050905},
pmid = {37243009}
}
@article{lin65261,
title = {Respiratory Coinfections in Children With SARS-CoV-2.},
author = {Westbrook A, Wang T, Bhakta K, Sullivan J, Gonzalez MD, Lam W, Rostad CA.},
journal = {Pediatr Infect Dis J},
year = {2023},
doi = {10.1097/inf.0000000000003981},
pmid = {37257127}
}
@article{lin65266,
title = {Clinicopathologic Features and Pathogens of Granulomatous Lobular Mastitis.},
author = {Li Y, Chen L, Zhang C, Wang Y, Hu J, Zhou M, Zhang X.},
journal = {Breast Care (Basel)},
year = {2023},
doi = {10.1159/000529391},
pmid = {37261131}
}
@article{lin65216,
title = {Real-life impact of respiratory panel PCR assay on antibiotic prescription in geriatric acute care in the pre-COVID-19 era.},
author = {Lissajoux A, Denis B, Gault E, Pepin M, Herr M, Duran C, Teillet L, Lechowski L, Dinh A.},
journal = {Infect Dis Now},
year = {2023},
doi = {10.1016/j.idnow.2023.104737},
pmid = {37331699}
}
@article{lin65173,
title = {Diagnostic challenges and forensic implications in a case of infantile fatal myocarditis.},
author = {Grimaldi F, Bonasoni MP, Pelletti G, Gabrielli L, Pelotti S.},
journal = {Forensic Sci Med Pathol},
year = {2024},
doi = {10.1007/s12024-023-00659-6},
pmid = {37335504}
}
@article{lin65196,
title = {Case report: Distinct neurologic manifestation and cytokine profile of a child with COVID-19-associated acute fulminant encephalitis.},
author = {Chang YM, Chen CH, Wang JN, Cheng CM, Tu YF, Shen CF.},
journal = {Front Med (Lausanne)},
year = {2023},
doi = {10.3389/fmed.2023.1209656},
pmid = {37384050}
}
@article{lin65304,
title = {Assessing respiratory viral exclusion and affinity interactions through co-infection incidence in a pediatric population during the 2022 resurgence of influenza and RSV.},
author = {Weidmann MD, Green DA, Berry GJ, Wu F.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1208235},
pmid = {37389220}
}
@article{lin65048,
title = {Case report: Plastic bronchitis associated with Bordetella parapertussis.},
author = {Li Z, Xu Y, Shen W.},
journal = {Medicine (Baltimore)},
year = {2023},
doi = {10.1097/md.0000000000034239},
pmid = {37417634}
}
@article{lin65171,
title = {Description of pathogenic bacteria in patients with respiratory symptoms associated with severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Colombia.},
author = {Zuluaga N, Martinez D, Hernandez C, Ballesteros N, Castaneda S, Ramirez JD, Munoz M.},
journal = {Ann Clin Microbiol Antimicrob},
year = {2023},
doi = {10.1186/s12941-023-00595-x},
pmid = {37420198}
}
@article{lin65296,
title = {Case-Control Study to Estimate the Association Between Tdap Vaccination During Pregnancy and Reduced Risk of Pertussis in Newborn Infants in Peru, 2019-2021.},
author = {Juscamayta-Lopez E, Valdivia F, Soto MP, Horna H, Pajuelo M.},
journal = {Open Forum Infect Dis},
year = {2023},
doi = {10.1093/ofid/ofad325},
pmid = {37469614}
}
@article{lin65126,
title = {Viral aetiology of severe acute respiratory illness among patients admitted during the 2022 peri-Hajj period.},
author = {Assiri AM, Alsuraihi H, Alshahrani AMM, Alzaid SZ, Albarraq AM, Asiri S, Algwizani AR, Alotaibi A, Al-Tawfiq JA.},
journal = {IJID Reg},
year = {2023},
doi = {10.1016/j.ijregi.2023.05.004},
pmid = {37583481}
}
@article{lin65326,
title = {Identification of Cell-Attachment Factors Derived from Green Algal Cells Disrupted by Sonication in Fabrication of Cell Plastics.},
author = {Nakanishi A, Nemoto S, Yamamoto N, Iritani K, Watanabe M.},
journal = {Bioengineering (Basel)},
year = {2023},
doi = {10.3390/bioengineering10080893},
pmid = {37627778}
}
@article{lin65235,
title = {Utilizing metagenomic next-generation sequencing for diagnosis and lung microbiome probing of pediatric pneumonia through bronchoalveolar lavage fluid in pediatric intensive care unit: results from a large real-world cohort.},
author = {Shen H, Liu T, Shen M, Zhang Y, Chen W, Chen H, Wang Y, Liu J, Tao J, He L, Lu G, Yan G.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1200806},
pmid = {37655299}
}
@article{lin65353,
title = {Development of a loop-mediated isothermal amplification (LAMP)-based electrochemical test for rapid detection of SARS-CoV-2.},
author = {Borah Slater K, Ahmad M, Poirier A, Stott A, Siedler BS, Brownsword M, Mehat J, Urbaniec J, Locker N, Zhao Y, La Ragione R, Silva SRP, McFadden J.},
journal = {iScience},
year = {2023},
doi = {10.1016/j.isci.2023.107570},
pmid = {37664622}
}
@article{lin65347,
title = {Efficient symptomatic treatment and viral load reduction for children with influenza virus infection by nasal-spraying Bacillus spore probiotics.},
author = {Tran TT, Phung TTB, Tran DM, Bui HT, Nguyen PTT, Vu TT, Ngo NTP, Nguyen MT, Nguyen AH, Nguyen ATV.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-41763-5},
pmid = {37684332}
}
@article{lin65121,
title = {Acute Respiratory Distress Syndrome: A Rare Manifestation of Rhinovirus Infection.},
author = {Phan AT, Ghantarchyan H, Nguyen VT, Hasan M.},
journal = {Cureus},
year = {2023},
doi = {10.7759/cureus.43484},
pmid = {37711941}
}
@article{lin65073,
title = {DAT, deacylating autotransporter toxin, from Bordetella parapertussis demyristoylates Galphai GTPases and contributes to cough.},
author = {Hiramatsu Y, Nishida T, Ota N, Tamaki Y, Nugraha DK, Horiguchi Y.},
journal = {Proc Natl Acad Sci U S A},
year = {2023},
doi = {10.1073/pnas.2308260120},
pmid = {37748060}
}
@article{lin65339,
title = {The diagnostic utility of microscopic quality assessment of sputum samples in the era of rapid syndromic PCR testing.},
author = {Markussen DL, Ebbesen M, Serigstad S, Knoop ST, Ritz C, Bjorneklett R, Kommedal O, Jenum S, Ulvestad E, Grewal HMS.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.03002-23},
pmid = {37772853}
}
@article{lin65499,
title = {Bordetella spp. block eosinophil recruitment to suppress the generation of early mucosal protection.},
author = {First NJ, Parrish KM, Martinez-Perez A, Gonzalez-Fernandez A, Bharrhan S, Woolard M, McLachlan JB, Scott RS, Wang J, Gestal MC.},
journal = {Cell Rep},
year = {2023},
doi = {10.1016/j.celrep.2023.113294},
pmid = {37883230}
}
@article{lin65315,
title = {COVID-19 in Infants and Children under 2 Years-Could Lung Ultrasound Score Be Correlated with Biomarkers and Symptoms?},
author = {Stoicescu ER, Lovrenski J, Iacob R, Cerbu S, Iacob D, Iacob ER, Susa SR, Ciuca IM, Bolintineanu Ghenciu LA, Ciornei-Hoffman A, Oancea C, Manolescu DL.},
journal = {Biomedicines},
year = {2023},
doi = {10.3390/biomedicines11102620},
pmid = {37892994}
}
@article{lin65148,
title = {Investigation of etiology of community-acquired pneumonia in hospitalized patients in a tertiary hospital of São Paulo City, Brazil.},
author = {Joelsons D, Alencar CS, Pinho JRR, Ho YL.},
journal = {Braz J Infect Dis},
year = {2023},
doi = {10.1016/j.bjid.2023.103690},
pmid = {37972649}
}
@article{lin65265,
title = {Characteristics of the Mycoplasma pneumoniae Epidemic from 2019 to 2020 in Korea: Macrolide Resistance and Co-Infection Trends.},
author = {Shin S, Koo S, Yang YJ, Lim HJ.},
journal = {Antibiotics (Basel)},
year = {2023},
doi = {10.3390/antibiotics12111623},
pmid = {37998825}
}
@article{lin65077,
title = {Coronavirus OC43 and Influenza H3N2 Concomitant Unilateral Parotitis: The Importance of Laboratory Tests in Mumps-Like Parotitis.},
author = {Spampinato S, Pavone P, Cacciaguerra G, Cocuzza S, Venanzi Rullo E, Marino S, Marino A, Nunnari G.},
journal = {Pathogens},
year = {2023},
doi = {10.3390/pathogens12111309},
pmid = {38003774}
}
@article{lin65038,
title = {Adenylate cyclase toxin of Bordetella parapertussis disrupts the epithelial barrier granting the bacterial access to the intracellular space of epithelial cells.},
author = {Gorgojo JP, Carrica MDC, Baroli CM, Valdez HA, Alvarez Hayes J, Rodriguez ME.},
journal = {PLoS One},
year = {2023},
doi = {10.1371/journal.pone.0291331},
pmid = {38011105}
}
@article{lin65200,
title = {Incidence and causative agent distribution of viral-induced paediatric asthma exacerbations under strict infection control measures: a single-centre retrospective study in Japan.},
author = {Sasada T, Hayashi K, Okafuji I, Miyakoshi C, Tsuruta S.},
journal = {BMC Pulm Med},
year = {2023},
doi = {10.1186/s12890-023-02779-9},
pmid = {38031001}
}
@article{lin65329,
title = {Bacterial nasopharyngeal colonisation in children in South Africa before and during the COVID-19 pandemic: an observational study.},
author = {Olwagen CP, Downs SL, Izu A, Tharasimbi L, Van Der Merwe L, Nunes MC, Madhi SA.},
journal = {Lancet Microbe},
year = {2024},
doi = {10.1016/s2666-5247(23)00260-4},
pmid = {38048806}
}
@article{lin65210,
title = {Genome-based prediction of cross-protective, HLA-DR-presented epitopes as putative vaccine antigens for multiple Bordetella species.},
author = {Natrajan MS, Hall JM, Weigand MR, Peng Y, Williams MM, Momin M, Damron FH, Dubey P, Tondella ML, Pawloski LC.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.03527-23},
pmid = {38054724}
}
@article{lin65238,
title = {SARS-CoV-2 in an immunocompromised host: convalescent plasma therapy and viral evolution elucidated by whole genome sequencing.},
author = {Seth-Smith H, Vesenbeckh S, Egli A, Ott S.},
journal = {BMJ Case Rep},
year = {2023},
doi = {10.1136/bcr-2023-255255},
pmid = {38087481}
}
@article{lin65107,
title = {The epidemiology of pediatric outpatient acute respiratory tract infections in the US: a multi-facility analysis of multiplex PCR testing from 2018 to 2023.},
author = {Timbrook TT, Glancey M, Noble BA, Eng S, Heins Z, Hommel B, Tessonneau M, Galvin BW, Macalino G.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.03423-23},
pmid = {38095469}
}
@article{lin65290,
title = {Assessing the Underestimation of Adult Pertussis Disease in Five Latin American Countries.},
author = {Guzman-Holst A, Gomez JA, Cintra O, Van Oorschot D, Jamet N, Nieto-Guevara J.},
journal = {Infect Dis Ther},
year = {2023},
doi = {10.1007/s40121-023-00895-x},
pmid = {38095808}
}
@article{lin65222,
title = {Genomic characterization of Bordetella pertussis in South Africa, 2015-2019.},
author = {Moosa F, du Plessis M, Weigand MR, Peng Y, Mogale D, de Gouveia L, Nunes MC, Madhi SA, Zar HJ, Reubenson G, Ismail A, Tondella ML, Cohen C, Walaza S, von Gottberg A, Wolter N.},
journal = {Microb Genom},
year = {2023},
doi = {10.1099/mgen.0.001162},
pmid = {38117675}
}
@article{lin65161,
title = {Multi-Omics Profiling of Candida albicans Grown on Solid Versus Liquid Media.},
author = {Alhameed RA, Semreen MH, Hamad M, Giddey AD, Sulaiman A, Al Bataineh MT, Al-Hroub HM, Bustanji Y, Alzoubi KH, Soares NC.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11122831},
pmid = {38137975}
}
@article{lin65197,
title = {Are lung ultrasound features more severe in infants with bronchiolitis and coinfections?},
author = {De Rose DU, Maddaloni C, Martini L, Ronci S, Pugnaloni F, Marrocco G, Di Pede A, Di Maio VC, Russo C, Ronchetti MP, Perno CF, Braguglia A, Calzolari F, Dotta A.},
journal = {Front Pediatr},
year = {2023},
doi = {10.3389/fped.2023.1238522},
pmid = {38161431}
}
@article{lin65042,
title = {Idiopathic toxic epidermal necrolysis in a pediatric patient.},
author = {Pan S, Boisen J, Saad S.},
journal = {Proc (Bayl Univ Med Cent)},
year = {2024},
doi = {10.1080/08998280.2024.2301782},
pmid = {38343491}
}
@article{lin65084,
title = {Multiplex PCR and Antibiotic Use in Children with Community-Acquired Pneumonia.},
author = {Del Rosal T, Bote-Gascon P, Falces-Romero I, Sainz T, Baquero-Artigao F, Rodriguez-Molino P, Mendez-Echevarria A, Bravo-Queipo-de-Llano B, Alonso LA, Calvo C.},
journal = {Children (Basel)},
year = {2024},
doi = {10.3390/children11020245},
pmid = {38397359}
}
@article{lin65272,
title = {Diagnostic Stewardship in Community-Acquired Pneumonia With Syndromic Molecular Testing: A Randomized Clinical Trial.},
author = {Markussen DL, Serigstad S, Ritz C, Knoop ST, Ebbesen MH, Faurholt-Jepsen D, Heggelund L, van Werkhoven CH, Clark TW, Bjorneklett RO, Kommedal O, Ulvestad E, Grewal HMS.},
journal = {JAMA Netw Open},
year = {2024},
doi = {10.1001/jamanetworkopen.2024.0830},
pmid = {38446481}
}
@article{lin65332,
title = {Effectiveness of one and two doses of acellular pertussis vaccines against laboratory-confirmed pertussis requiring hospitalisation in infants: Results of the PERTINENT sentinel surveillance system in six EU/EEA countries, December 2015 - December 2019.},
author = {Merdrignac L, Ait El Belghiti F, Pandolfi E, Acosta L, Fabianova K, Habington A, Garcia Cenoz M, Boas H, Toubiana J, Tozzi AE, Jordan I, Zavadilova J, O'Sullivan N, Navascues A, Flem E, Croci I, Jane M, Krizova P, Cotter S, Fernandino L, Bekkevold T, Munoz-Almagro C, Bacci S, Kramarz P, Kissling E, Savulescu C, Renacoq Group, PERTINENT Group.},
journal = {Vaccine},
year = {2024},
doi = {10.1016/j.vaccine.2024.02.090},
pmid = {38472070}
}
@article{lin65201,
title = {Differentiating Viral from Bacterial Pneumonia in Children: The Diagnostic Role of Lung Ultrasound-A Prospective Observational Study.},
author = {Stoicescu ER, Iacob R, Ilie AC, Iacob ER, Susa SR, Ghenciu LA, Constantinescu A, Cocolea DM, Oancea C, Manolescu DL.},
journal = {Diagnostics (Basel)},
year = {2024},
doi = {10.3390/diagnostics14050480},
pmid = {38472952}
}
@article{lin65144,
title = {SARS-CoV-2 pandemic non-pharmacologic interventions temporally associated with reduced pediatric infections due to Mycoplasma pneumoniae and co-infecting respiratory viruses in Arkansas.},
author = {Boyanton BL, Frenner RA, Ingold A, Ambroggio L, Kennedy JL.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.02908-23},
pmid = {38488365}
}
@article{lin65167,
title = {Patterns of Non-influenza Respiratory Viruses Among Severe Acute Respiratory Infection Cases in Burkina Faso: A Surveillance Study.},
author = {Lingani M, Cisse A, Ilboudo AK, Yameogo I, Tarnagada Z.},
journal = {Influenza Other Respir Viruses},
year = {2024},
doi = {10.1111/irv.13271},
pmid = {38501305}
}
@article{lin65305,
title = {Predictors of severity and prolonged hospital stay of viral acute respiratory infections (ARI) among children under five years in Burkina Faso, 2016-2019.},
author = {Ilboudo AK, Cisse A, Milucky J, Tialla D, Mirza SA, Diallo AO, Bicaba BW, Charlemagne KJ, Diagbouga PS, Owusu D, Waller JL, Talla-Nzussouo N, Charles MD, Whitney CG, Tarnagda Z.},
journal = {BMC Infect Dis},
year = {2024},
doi = {10.1186/s12879-024-09219-x},
pmid = {38509462}
}
@article{lin65461,
title = {The contribution of BvgR, RisA, and RisS to global gene regulation, intracellular cyclic-di-GMP levels, motility, and biofilm formation in Bordetella bronchiseptica.},
author = {Nicholson TL, Waack U, Fleming DS, Chen Q, Miller LC, Merkel TJ, Stibitz S.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1305097},
pmid = {38516008}
}
@article{lin65104,
title = {The seroepidemiology of immunoglobulin G antibodies against pertussis toxin and filamentous hemagglutinin in the east of China during the COVID-19 pandemic.},
author = {Sun X, Zhang T, Sun J, Zhou J, Chen Q, Jia C, Xu Y, Wu Y, Wang Z, Wang W.},
journal = {Hum Vaccin Immunother},
year = {2024},
doi = {10.1080/21645515.2024.2331438},
pmid = {38517269}
}
@article{lin65311,
title = {Sero and Carriage Epidemiology of Pertussis in Urban and Rural Regions in Vietnam.},
author = {Toizumi M, Le LT, Nguyen HAT, Le TTT, Kitamura N, Bui LX, Ho NM, Do HT, Kamachi K, Otsuka N, Bui MX, Dang DA, Yoshida LM.},
journal = {Vaccines (Basel)},
year = {2024},
doi = {10.3390/vaccines12030225},
pmid = {38543859}
}
@article{lin65057,
title = {Pertussis Vaccines Scarcely Provide Protection against Bordetella parapertussis Infection in Children-A Systematic Review and Meta-Analysis.},
author = {Remesh AT, Alagarasu K, Jadhav S, Prabhakar M, Viswanathan R.},
journal = {Vaccines (Basel)},
year = {2024},
doi = {10.3390/vaccines12030253},
pmid = {38543887}
}
@article{lin65099,
title = {Impact of FilmArray respiratory panel test for hospitalized pediatric respiratory tract infection in Taiwan: A 3-year single-center cohort study.},
author = {Hu JJ, Wang DL, Tzeng IS.},
journal = {Medicine (Baltimore)},
year = {2024},
doi = {10.1097/md.0000000000037320},
pmid = {38552101}
}
@article{lin65059,
title = {The impact of non-pharmaceutical interventions on community non-SARS-CoV-2 respiratory infections in preschool children.},
author = {Klee B, Diexer S, Horn J, Langer S, Wende M, Ortiz D, Bielecka A, Strowig T, Mikolajczyk R, Gottschick C.},
journal = {BMC Pediatr},
year = {2024},
doi = {10.1186/s12887-024-04686-2},
pmid = {38561704}
}
@article{lin65264,
title = {Patterns of Change in Nucleotide Diversity Over Gene Length.},
author = {Ali F.},
journal = {Genome Biol Evol},
year = {2024},
doi = {10.1093/gbe/evae078},
pmid = {38608148}
}
@article{lin65041,
title = {Reemergence of Bordetella parapertussis, United States, 2019-2023.},
author = {Noble BA, Jiudice SS, Jones JD, Timbrook TT.},
journal = {Emerg Infect Dis},
year = {2024},
doi = {10.3201/eid3005.231278},
pmid = {38666607}
}
@article{lin65289,
title = {Randomised multicentre effectiveness trial of rapid syndromic testing by panel assay in children presenting to European emergency departments with acute respiratory infections-trial protocol for the ADEQUATE Paediatric trial.},
author = {ADEQUATE Paediatric Trial Group.},
journal = {BMJ Open},
year = {2024},
doi = {10.1136/bmjopen-2023-076338},
pmid = {38670622}
}
@article{lin65066,
title = {Clinical Evaluation of the BIOFIRE SPOTFIRE Respiratory Panel.},
author = {Chan WS, Ho CW, Chan TC, Hung J, To MY, Leung SM, Lai KC, Wong CY, Leung CP, Au CH, Wan TS, Zee JS, Ma ES, Tang BS.},
journal = {Viruses},
year = {2024},
doi = {10.3390/v16040600},
pmid = {38675941}
}
@article{lin65097,
title = {Detection of a Human Adenovirus Outbreak, Including Some Critical Infections, Using Multipathogen Testing at a Large University, September 2022-January 2023.},
author = {Montgomery JP, Marquez JL, Nord J, Stamper AR, Edwards EA, Valentini N, Frank CJ, Washer LL, Ernst RD, Park JI, Price D, Collins J, Smith-Jeffcoat SE, Hu F, Knox CL, Khan R, Lu X, Kirking HL, Hsu CH.},
journal = {Open Forum Infect Dis},
year = {2024},
doi = {10.1093/ofid/ofae192},
pmid = {38680614}
}
@article{lin65155,
title = {Safety assessments of recombinant DTaP vaccines developed in South Korea.},
author = {Choi GS, Kang KR, Kim SB, Ji JH, Cho GW, Kang HM, Kang JH.},
journal = {Clin Exp Vaccine Res},
year = {2024},
doi = {10.7774/cevr.2024.13.2.155},
pmid = {38752005}
}
@article{lin65246,
title = {Rapid respiratory microbiological point-of-care-testing and antibiotic prescribing in primary care: Protocol for the RAPID-TEST randomised controlled trial.},
author = {Abbs SE, Armstrong-Buisseret L, Eastwood K, Granier S, Lane A, Lui M, Metcalfe C, Mitchell P, Muir P, Ridd M, Taylor J, Yardley L, Young G, Hay AD.},
journal = {PLoS One},
year = {2024},
doi = {10.1371/journal.pone.0302302},
pmid = {38768129}
}
@article{lin65120,
title = {Mycoplasma pneumoniae Outbreak in 2023: Post-pandemic Resurgence of an Atypical Bacterial Pathogen.},
author = {Upadhyay P, Singh V.},
journal = {Cureus},
year = {2024},
doi = {10.7759/cureus.58757},
pmid = {38779270}
}
@article{lin65189,
title = {Impact of the Omicron Strain on Febrile Convulsions Requiring Hospitalization in Children: A Single-Center Observational Study.},
author = {Nagasawa M, Shimoyama T, Hashimoto S, Nakagawa R, Yokoyama H, Okada M, Udagawa T, Oshiba A.},
journal = {Pediatr Rep},
year = {2024},
doi = {10.3390/pediatric16020034},
pmid = {38804377}
}
@article{lin65214,
title = {Mutation of hmgA, encoding homogentisate 1,2-dioxygenase, is responsible for pyomelanin production but does not impact the virulence of Burkholderia cenocepacia in a chronic granulomatous disease mouse lung infection.},
author = {Moustafa DA, Wu L, Ivey M, Fankhauser SC, Goldberg JB.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.00410-24},
pmid = {38809005}
}
@article{lin65036,
title = {BPP0974 is a Bordetella parapertussis adhesin expressed in the avirulent phase, implicated in biofilm formation and intracellular survival.},
author = {Carrica MDC, Gorgojo JP, Alvarez-Hayes J, Valdez HA, Lamberti YA, Rodriguez ME.},
journal = {Microb Pathog},
year = {2024},
doi = {10.1016/j.micpath.2024.106754},
pmid = {38897361}
}
@article{lin65122,
title = {Comparison of Bordetella species identification among differing rt-PCR assays in the United States.},
author = {Cole M, Simon AK, Faulkner A, Skoff T, Tondella ML, Montero C, Nye MB, Williams M.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.00783-24},
pmid = {38980022}
}
@article{lin65033,
title = {Transient reemergence of Bordetella parapertussis in France in 2022.},
author = {Bouchez V, Toubiana J, Guillot S, Parapertussis Study Group, El Belghiti FA, Landier A, Armatys N, Trombert-Paolantoni S, Soares A, Rodrigues C, Brisse S.},
journal = {J Med Microbiol},
year = {2024},
doi = {10.1099/jmm.0.001843},
pmid = {38995835}
}
@article{lin65139,
title = {Hamman's Syndrome after Vaginal Delivery: A Case of Postpartum Spontaneous Pneumomediastinum with Subcutaneous Emphysema and Review of the Literature.},
author = {Olafsen-Barnes K, Kaland MM, Kajo K, Rydsaa LJ, Visnovsky J, Zubor P.},
journal = {Healthcare (Basel)},
year = {2024},
doi = {10.3390/healthcare12131332},
pmid = {38998866}
}
@article{lin65078,
title = {Acute Respiratory Tract Infections (ARTIs) in Children after COVID-19-Related Social Distancing: An Epidemiological Study in a Single Center of Southern Italy.},
author = {Falsaperla R, Sortino V, La Cognata D, Barberi C, Corsello G, Malaventura C, Suppiej A, Collotta AD, Polizzi A, Grassi P, Ruggieri M.},
journal = {Diagnostics (Basel)},
year = {2024},
doi = {10.3390/diagnostics14131341},
pmid = {39001232}
}
@article{lin65232,
title = {RSV Risk Profile in Hospitalized Adults and Comparison with Influenza and COVID-19 Controls in Valladolid, Spain, 2010-2022.},
author = {Haeberer M, Mengel M, Fan R, Toquero-Asensio M, Martin-Toribio A, Liu Q, He Y, Uppal S, Rojo-Rello S, Dominguez-Gil M, Hernan-Garcia C, Fernandez-Espinilla V, Liang C, Begier E, Castrodeza Sanz J, Eiros JM, Sanz-Munoz I.},
journal = {Infect Dis Ther},
year = {2024},
doi = {10.1007/s40121-024-01021-1},
pmid = {39033476}
}
@article{lin65049,
title = {Molecular epidemiology and genomic features of Bordetella parapertussis in Shanghai, China, 2017-2022.},
author = {Fu P, Li Y, Qin J, Xie L, Yang C, Wang C.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1428766},
pmid = {39044958}
}
@article{lin65136,
title = {Resurgence of Bordetella pertussis, including one macrolide-resistant isolate, France, 2024.},
author = {Rodrigues C, Bouchez V, Soares A, Trombert-Paolantoni S, Ait El Belghiti F, Cohen JF, Armatys N, Landier A, Blanchot T, Hervo M, REMICOQ study group, Toubiana J, Brisse S.},
journal = {Euro Surveill},
year = {2024},
doi = {10.2807/1560-7917.es.2024.29.31.2400459},
pmid = {39092529}
}
@article{lin65116,
title = {Genomic analysis of Oceanotoga teriensis strain UFV_LIMV02, a multidrug-resistant thermophilic bacterium isolated from an offshore oil reservoir.},
author = {Santos AJDC, Dias RS, da Silva CHM, Vidigal PMP, de Sousa MP, da Silva CC, de Paula SO.},
journal = {Access Microbiol},
year = {2024},
doi = {10.1099/acmi.0.000801.v3},
pmid = {39148687}
}
@article{lin65152,
title = {Distinct clinical characteristics of bocavirus and Mycoplasma pneumoniae infection in children plastic bronchitis.},
author = {Liu M, Wei D, Zhang T, Xu Y, Guo W.},
journal = {Immun Inflamm Dis},
year = {2024},
doi = {10.1002/iid3.1373},
pmid = {39150240}
}
@article{lin65081,
title = {Disseminated Echovirus 11 infection in a newborn in the Province of Bolzano, Italy.},
author = {Bianconi I, Battisti L, Staffler A, Giacobazzi E, Masi E, Incrocci E, Bellutti M, Fontana S, Stefanelli P, Buttinelli G, Pagani E.},
journal = {Infection},
year = {2024},
doi = {10.1007/s15010-024-02315-9},
pmid = {39150641}
}
@article{lin65241,
title = {DipR, a GntR/FadR-family transcriptional repressor: regulatory mechanism and widespread distribution of the dip cluster for dipicolinic acid catabolism in bacteria.},
author = {Jiang Y, Wang K, Xu L, Xu L, Xu Q, Mu Y, Hong Q, He J, Jiang J, Qiu J.},
journal = {Nucleic Acids Res},
year = {2024},
doi = {10.1093/nar/gkae728},
pmid = {39180394}
}
@article{lin65163,
title = {Post-COVID-19 pandemic changes in pertussis incidence among patients with acute respiratory tract infections in Zhejiang, China.},
author = {Wang H, Fu M, Chen W, Ma Y.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1448997},
pmid = {39184026}
}
@article{lin65154,
title = {Prevalence and Clinical Impact of Viral and Bacterial Coinfections in Hospitalized Children and Adolescents Aged under 18 Years with COVID-19 during the Omicron Wave in Russia.},
author = {Yakovlev AS, Afanasev VV, Alekseenko SI, Belyaletdinova IK, Isankina LN, Gryaznova IA, Skalny AV, Kozlovskaya LI, Ishmukhametov AA, Karganova GG.},
journal = {Viruses},
year = {2024},
doi = {10.3390/v16081180},
pmid = {39205154}
}
@article{lin65182,
title = {Prevalence and Seasonal Patterns of 16 Common Viral Respiratory Pathogens during the COVID-19 Pandemic in Gauteng Province, South Africa, 2020-2021.},
author = {Reddy B, Simane A, Mthiyane H, Mashishi B, Mbenenge N, Treurnicht FK.},
journal = {Viruses},
year = {2024},
doi = {10.3390/v16081325},
pmid = {39205299}
}
@article{lin65053,
title = {Co-detection of respiratory pathogens among ILI patients: characterization of samples collected during the 2018/19 and 2019/20 pre-pandemic seasons.},
author = {Ferrari A, Schiavetti I, Ogliastro M, Minet C, Sibilio R, Giberti I, Costa E, Massaro E, Lai PL, Mosca S, Bruzzone B, Orsi A, Panatto D, Icardi G.},
journal = {BMC Infect Dis},
year = {2024},
doi = {10.1186/s12879-024-09687-1},
pmid = {39210273}
}
@article{lin65162,
title = {Performance comparison of three commercial multiplex molecular panels for respiratory viruses at a South African academic hospital.},
author = {van der Westhuizen C, Newton-Foot M, Nel P.},
journal = {Afr J Lab Med},
year = {2024},
doi = {10.4102/ajlm.v13i1.2415},
pmid = {39228900}
}
@article{lin65004,
title = {Development of a Multiplex Real-Time PCR Assay for the Simultaneous Detection of Two Fungal Pathogens Causing Pneumonia.},
author = {Lim HJ, Ahn S, No JH, Park MY, Kim MJ, Sohn YH, Shin KS, Park JE, Yang YJ.},
journal = {J Fungi (Basel)},
year = {2024},
doi = {10.3390/jof10090619},
pmid = {39330379}
}
@article{lin65327,
title = {BvgR is important for virulence-related phenotypes in Bordetella bronchiseptica.},
author = {Gutierrez MdlP, Damron FH, Sisti F, Fernandez J.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.00794-24},
pmid = {39365045}
}
@article{lin65157,
title = {Clinical Evaluation of Acute Exacerbation of Interstitial Lung Disease in a Single Tertiary Center: Perspectives before and after the Coronavirus Disease 2019 Pandemic.},
author = {Takagi R, Saraya T, Yamada S, Nakajima K, Doi K, Akizawa T, Ishikawa N, Kurokawa N, Kobayashi F, Nunokawa H, Aso J, Nakamoto Y, Ishida M, Sada M, Honda K, Nakamoto K, Takata S, Ishii H.},
journal = {J Clin Med},
year = {2024},
doi = {10.3390/jcm13195733},
pmid = {39407792}
}
@article{lin65195,
title = {Bibliometrics analysis and knowledge mapping of pertussis vaccine research: trends from 1994 to 2023.},
author = {Tan C, Xiao Y, Chen S, Liu T, Zhou J, Zhang S, Hu Y, Zhou J, She Z, Tian B, Wu A, Li C.},
journal = {Infection},
year = {2025},
doi = {10.1007/s15010-024-02414-7},
pmid = {39417957}
}
@article{lin65110,
title = {Development of a wastewater based infectious disease surveillance research system in South Korea.},
author = {Kim YT, Lee K, Lee H, Son B, Song M, Lee SH, Kwon M, Kim DS, Noh TH, Lee S, Kim YJ, Lee MK, Lee KR.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-76614-4},
pmid = {39427054}
}
@article{lin65119,
title = {Pertussis Outbreak During 2023 in Gipuzkoa, North Spain.},
author = {Marimon JM, Montes M, Vizuete N, Alvarez Guerrico L, Aginagalde AH, Mir-Cros A, Gonzalez-Lopez JJ, Vicente D.},
journal = {Vaccines (Basel)},
year = {2024},
doi = {10.3390/vaccines12101192},
pmid = {39460357}
}
@article{lin65076,
title = {Humidifier-Related Lung Injury Leading to Hypersensitivity Pneumonitis: A Case Report.},
author = {Obregon M, Faiek S, White P.},
journal = {Cureus},
year = {2024},
doi = {10.7759/cureus.70448},
pmid = {39473639}
}
@article{lin65260,
title = {Deciphering Bordetella pertussis epidemiology through culture-independent multiplex amplicon and metagenomic sequencing.},
author = {Luu LDW, Rafique R, Payne M, Octavia S, Robson J, Sintchenko V, Lan R.},
journal = {J Clin Microbiol},
year = {2024},
doi = {10.1128/jcm.01178-24},
pmid = {39494864}
}
@article{lin65091,
title = {Case report: First report of Legionella pneumophila and Bordetella bronchiseptica coinfection in an immunocompromised patient.},
author = {La Sorda M, Palucci I, Natalini D, Fillo S, Giordani F, Paglione F, Monte A, Lista F, Mancini F, Girolamo A, Rota MC, Caporali MG, Ricci R, Ginevra C, Jarraud S, Sanguinetti M, Scaturro M, Ricci ML.},
journal = {Front Med (Lausanne)},
year = {2024},
doi = {10.3389/fmed.2024.1470567},
pmid = {39502646}
}
@article{lin65286,
title = {Expert consensus for pertussis in children: new concepts in diagnosis and treatment.},
author = {Mi YM, Deng JK, Zhang T, Cao Q, Wang CQ, Ye S, Chen YH, He HQ, Wu BB, Liu Y, Zeng M, Li W, Wu F, Xu HM, Zhao SY, Liu G, Hua W, Xu D, Bai GN, Yang Y, Huang LS, Chen YP, Yao KH, Shao ZJ, Hua CZ.},
journal = {World J Pediatr},
year = {2024},
doi = {10.1007/s12519-024-00848-5},
pmid = {39537933}
}
@article{lin65051,
title = {The potential dangers of whooping cough: a case of rib fracture and pneumothorax.},
author = {Zatovkanukova P, Sliva J.},
journal = {BMC Infect Dis},
year = {2024},
doi = {10.1186/s12879-024-10192-8},
pmid = {39538184}
}
@article{lin65109,
title = {Observational Study on the Clinical Reality of Community-Acquired Respiratory Virus Infections in Adults and Older Individuals.},
author = {Nagasawa M, Udagawa T, Kato T, Tanaka I, Yamamoto R, Sakaguchi H, Sekikawa Y.},
journal = {Pathogens},
year = {2024},
doi = {10.3390/pathogens13110983},
pmid = {39599536}
}
@article{lin65043,
title = {Childhood Respiratory Illnesses Before and After COVID-19 Pandemic Restrictions.},
author = {Randall MM, Raae-Nielsen J, Tu CJ, Barcega BR, Young TP, Brown LA.},
journal = {Cureus},
year = {2024},
doi = {10.7759/cureus.72957},
pmid = {39640092}
}
@article{lin65047,
title = {Precision Diagnosis of Viral Respiratory Infections: Unleashing the Power of Multiplex Polymerase Chain Reaction (PCR) for Enhanced Infection Management.},
author = {Singh M, Gupta A, Agarwal A, Singh V, Omar B.},
journal = {Cureus},
year = {2024},
doi = {10.7759/cureus.73100},
pmid = {39650999}
}
@article{lin65044,
title = {Do not let perfect be the enemy of good: the current reality of Bordetella testing.},
author = {Yee R.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.02210-24},
pmid = {39651857}
}
@article{lin65050,
title = {Lower Respiratory Tract Infections Following Respiratory Syncytial Virus Monoclonal Antibody Nirsevimab Immunization Versus Placebo: Analysis From a Phase 3 Randomized Clinical Trial (MELODY).},
author = {Arbetter D, Gopalakrishnan V, Aksyuk AA, Ahani B, Chang Y, Dagan R, Esser MT, Hammitt LL, Mankad VS, Saez-Llorens X, Shen D, Leach A, Kelly EJ, Villafana T, Wilkins D.},
journal = {Clin Infect Dis},
year = {2025},
doi = {10.1093/cid/ciae596},
pmid = {39656748}
}
@article{lin65185,
title = {Multicenter Evaluation of the QIAstat-Dx and the BioFire Multiplex Panel Tests for the Detection of Respiratory Pathogens.},
author = {Gosert R, Koller R, Meyer J, Drager S, Ramette A, Bingisser R, Nickel CH, Bassetti S, Sutter ST, Keller PM, Bittel P, Leuzinger K.},
journal = {J Med Virol},
year = {2024},
doi = {10.1002/jmv.70129},
pmid = {39711468}
}
@article{lin65067,
title = {Real-Life Insights into Pertussis Diagnosis: High Yield of PCR Testing and Clinical Outcomes-An Emerging Old Enemy or Just a Sign of PCR Times?},
author = {Dimeas IE, Kotsiou OS, Salgkami P, Poulakida I, Boutlas S, Daniil Z, Papadamou G, Gourgoulianis KI.},
journal = {J Pers Med},
year = {2024},
doi = {10.3390/jpm14121116},
pmid = {39728029}
}
@article{lin65175,
title = {Trend of pathogens and respiratory co-infections in the province of Messina: from pediatric age to senescence.},
author = {Genovese C, Gorgone M, Genovese G, LA Spada G, Balsamo D, Calderone SM, Faranda I, Squeri R.},
journal = {J Prev Med Hyg},
year = {2024},
doi = {10.15167/2421-4248/jpmh2024.65.3.3344},
pmid = {39758766}
}
@article{lin65094,
title = {Epidemiology of respiratory viruses according to age group, 2023-24 winter season, Kyoto, Japan.},
author = {Matsumura Y, Yamamoto M, Tsuda Y, Shinohara K, Tsuchido Y, Yukawa S, Noguchi T, Takayama K, Nagao M.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-024-85068-7},
pmid = {39762485}
}
@article{lin65082,
title = {Case report of entrectinib associated fulminant myocarditis.},
author = {Rundhawa G, Ali M, Jacob R, Obeng-Gyimah E, Vranian MN.},
journal = {Eur Heart J Case Rep},
year = {2025},
doi = {10.1093/ehjcr/ytae650},
pmid = {39802058}
}
@article{lin65060,
title = {Acalculous Cholecystitis as an Atypical Presentation of Viral Pericarditis: A Case Report.},
author = {Chen A, Salehi O, Cevik J.},
journal = {Am J Case Rep},
year = {2025},
doi = {10.12659/ajcr.946029},
pmid = {39825526}
}
@article{lin65336,
title = {Itaconate mechanism of action and dissimilation in Mycobacterium tuberculosis.},
author = {Priya M, Gupta SK, Koundal A, Kapoor S, Tiwari S, Kidwai S, Sorio de Carvalho LP, Thakur KG, Mahajan D, Sharma D, Kumar Y, Singh R.},
journal = {Proc Natl Acad Sci U S A},
year = {2025},
doi = {10.1073/pnas.2423114122},
pmid = {39841148}
}
@article{lin65145,
title = {Impact of molecular diagnostic techniques on the acute respiratory infection sentinel surveillance program, Antioquia, Colombia, 2022.},
author = {Maya MA, Ortiz C, Averhoff F, Carabali M, Perez-Restrepo LS, Ciuoderis-Aponte K, Davila AI, Bastidas D, Buitrago S, Cloherty GA, Berg MG, Landy A, Hernandez-Ortiz JP, Rebolledo PA, Osorio JE.},
journal = {Front Epidemiol},
year = {2024},
doi = {10.3389/fepid.2024.1519378},
pmid = {39868356}
}
@article{lin65205,
title = {Alleviating symptoms of paediatric acute rhinosinusitis and acute otitis media with otorrhea using nasal-spraying Bacillus probiotics: a randomized controlled trial.},
author = {Khieu TH, Le DP, Nguyen BT, Ngo BT, Chu HT, Truong DM, Nguyen HM, Nguyen AH, Pham TD, Van Nguyen AT.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-87372-2},
pmid = {39870748}
}
@article{lin65058,
title = {Comparing sputum, nasopharyngeal swabs, and combined samples for respiratory bacterial detection using multiplex PCR.},
author = {Kim KJ, Yun SG, Nam M-H, Lee CK, Cho Y.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.02285-24},
pmid = {39882879}
}
@article{lin65166,
title = {Characteristics of plastic bronchitis in children with infectious pneumonia.},
author = {Cai X, Lin M, Zhou L, Sheng W, Jiao W, Bian H, Yin T.},
journal = {Ital J Pediatr},
year = {2025},
doi = {10.1186/s13052-025-01873-4},
pmid = {39901284}
}
@article{lin65080,
title = {Diagnostic value of metagenomic next-generation sequencing using bronchoalveolar lavage fluid samples for pathogen detection in children with severe or refractory pneumonia.},
author = {Zhao M, Shi Y, Zhang C, Lu M, Shen M, Xie L, Wang L, Lu A.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.01087-24},
pmid = {39902982}
}
@article{lin65031,
title = {Retraction for Hiramatsu et al., "Melanin Produced by Bordetella parapertussis Confers a Survival Advantage to the Bacterium during Host Infection".},
author = {Hiramatsu Y, Nishida T, Nugraha DK, Sugihara F, Horiguchi Y.},
journal = {mSphere},
year = {2025},
doi = {10.1128/msphere.01072-24},
pmid = {39907431}
}
@article{lin65034,
title = {Draft genome sequences of Bordetella parapertussis clinical isolates during an increase in confirmed cases from Colombia, 2023.},
author = {Montilla-Escudero E, Rojas-Baquero F, Bonilla-Bravo V, Vargas-Florez N.},
journal = {Microbiol Resour Announc},
year = {2025},
doi = {10.1128/mra.00672-24},
pmid = {39907442}
}
@article{lin65114,
title = {Sources and clinical characteristics of infant pertussis in China: increasing contribution of siblings.},
author = {Luo F, Zheng S, Zhou Y, Zhu Y, Su Y, Dai R, Hua C, Zhang H, He H.},
journal = {BMC Infect Dis},
year = {2025},
doi = {10.1186/s12879-025-10536-y},
pmid = {39930341}
}
@article{lin65115,
title = {Epidemiological investigation of a pertussis outbreak among schoolchildren in Burkina Faso, 2019.},
author = {Ilboudo AK, Cisse A, Savadogo M, Sana M, Gouba N, Sourabie Y, Nayaga R, Tialla D, Zongo M, Yameogo I, Tarnagda Z.},
journal = {BMC Res Notes},
year = {2025},
doi = {10.1186/s13104-025-07129-y},
pmid = {39930513}
}
@article{lin65106,
title = {An Adverse Double-Hit by Pembrolizumab: A Case Report of Bullous Pemphigoid and Pneumonitis.},
author = {Chatzigrigoriadis C, Avramidis P, Davoulos C, Dimitrakopoulos FI, Eleftherakis G, Petropoulou C, Sperdouli D, Stergiopoulos GM, Galiatsatos P, Assimakopoulos S.},
journal = {J Med Cases},
year = {2025},
doi = {10.14740/jmc5089},
pmid = {39935545}
}
@article{lin65108,
title = {Impact of a Concurrent Respiratory Virus Infection on the Clinical Presentation and Response to Initial Treatment of Kawasaki Disease: A Single-Center Observational Study.},
author = {Koyanagi T, Nakagawa R, Okada M, Yokoyama H, Amano S, Shimoyama T, Udagawa T, Suzuki N, Hosokawa S, Nagasawa M.},
journal = {J Clin Med},
year = {2025},
doi = {10.3390/jcm14030775},
pmid = {39941446}
}
@article{lin65231,
title = {Prevalence of Serious Bacterial Infection in Young Infants with Hypothermia with Positive Respiratory Pathogen Testing.},
author = {Prasad M, Morrison JM, Banker SL, Lee J, Wood JK, Van Meurs A, Westphal K, Schwendeman E, Berger S, Mertens EO, McCartor S, Mitchell M, Lee C, Combs MD, Molas-Torreblanca K, Ewing JA, Halvorson EE, Potisek NM, Hypothermic Young Infant Research Collaborative.},
journal = {J Pediatr Clin Pract},
year = {2024},
doi = {10.1016/j.jpedcp.2024.200095},
pmid = {39949417}
}
@article{lin65032,
title = {Addressing the consequences of missing vaccines: A case report of pertussis in a child with acute lymphoblastic leukemia.},
author = {Perea Rojas DM, Rojas Torres IL, Perea Vasquez LE.},
journal = {Respir Med Case Rep},
year = {2025},
doi = {10.1016/j.rmcr.2025.102173},
pmid = {39980613}
}
@article{lin65249,
title = {COVID-19 symptom severity and duration among outpatients, July 2021-May 2023: The PROTECT observational study.},
author = {Vashi B, Pettrone K, Wilson CS, Chenoweth JG, Brandsma J, Gregory MK, Genzor P, Striegel DA, Rothman RE, Hansoti B, Avornu GD, McBryde B, Zimmerman LR, Woods CW, Petzold EA, Cowden J, Nitayaphan S, Nasomsong W, Clark DV.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0314518},
pmid = {39982872}
}
@article{lin65046,
title = {A case report of discordant Chikungunya manifestations in a married couple: From acute undifferentiated fever to fatal sepsis with purpura fulminans.},
author = {Pathomchareansukchai D, Horthongkham N, Rattanaumpawan P.},
journal = {IDCases},
year = {2025},
doi = {10.1016/j.idcr.2025.e02182},
pmid = {39995817}
}
@article{lin65118,
title = {High circulation of pertussis in infants and close contacts in Antananarivo, the capital of Madagascar in Africa, and Cambodia in Asia.},
author = {Noel G, Harimanana A, Borand L, Campana F, Leng C, Botr C, Rafetrarivony L, Rajabizadeh M, Kerleguer A, Dim B, Randriamoramanana AM, Ait-Ahmed M, Guiso N, Collard JM, Taieb F, PERILIC working group.},
journal = {BMC Infect Dis},
year = {2025},
doi = {10.1186/s12879-025-10590-6},
pmid = {40016639}
}
@article{lin65113,
title = {Respiratory pathogens detected in specimens collected for COVID-19 surveillance in Zambia.},
author = {Nyahoda M, Saasa N, Changula K, Muleya W, Mupila Z, Chikoti C, Moonga G, Sutcliffe C, Kwenda G, Simulundu E.},
journal = {J Public Health Afr},
year = {2025},
doi = {10.4102/jphia.v16i1.684},
pmid = {40083467}
}
@article{lin65027,
title = {Trends in Commercial Laboratory Testing and Positivity for Bordetella Species in the United States, 2019 Through 2023.},
author = {Isenhour CJ, Pawloski L, Hariri S, Skoff TH.},
journal = {J Infect Dis},
year = {2025},
doi = {10.1093/infdis/jiaf141},
pmid = {40116922}
}
@article{lin65362,
title = {Rapid diagnostics to enhance therapy selection for the treatment of bacterial infections.},
author = {Ryu H, Abdul Azim A, Bhatt PJ, Uprety P, Mohayya S, Dixit D, Kirn TJ, Narayanan N.},
journal = {Curr Pharmacol Rep},
year = {2023},
doi = {10.1007/s40495-023-00323-1},
pmid = {40161380}
}
@article{lin65125,
title = {Burden and Outcomes of Severe Lower Respiratory Tract Infections with Unknown Etiology: A Retrospective Observational Study on Epidemiological Trends Over an 8-Year Period (2016-2024).},
author = {Scaglione G, Canuti M, Offer M, Breschi V, Piralla A, Baldanti F, Del Castillo G, Scovenna F, Buoro S, Morani F, Cereda D, Bandera A, Gori A, Colaneri M.},
journal = {Infect Dis Ther},
year = {2025},
doi = {10.1007/s40121-025-01148-9},
pmid = {40208411}
}
@article{lin65098,
title = {Investigation of the Correlation Between ELISA and Serum Amyloid A in the Diagnosis of Bordetella bronchiseptica in Dogs.},
author = {Akar K, Sanioglu Golen G, Ekin IH.},
journal = {Vet Med Sci},
year = {2025},
doi = {10.1002/vms3.70323},
pmid = {40214008}
}
@article{lin65030,
title = {Evaluation of three real-time PCR methods for the detection and the differentiation of Bordetella pertussis, Bordetella parapertussis and Bordetella holmesii.},
author = {Cherkaoui S, Wautier M, Martini H, Dahma H, van den Wijngaert S, Martiny D, Yin N.},
journal = {Eur J Clin Microbiol Infect Dis},
year = {2025},
doi = {10.1007/s10096-025-05129-1},
pmid = {40240689}
}
@article{lin65089,
title = {Epidemiology, co-infection, and seasonal patterns of respiratory tract infections in a tertiary care center in Saudi Arabia between 2021 and 2022.},
author = {Alzahrani N, Alshehri A, Alshehri A, Al Johani S.},
journal = {Front Public Health},
year = {2025},
doi = {10.3389/fpubh.2025.1492653},
pmid = {40265050}
}
@article{lin65123,
title = {Characteristics of Mycoplasma pneumoniae Pneumonia in Romanian Children.},
author = {Ulmeanu AI, Ciuparu GE, Matran ER.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13040883},
pmid = {40284719}
}
@article{lin65206,
title = {Pathogen Profile of Children Hospitalised with Viral Respiratory Infections in Galati County, Romania.},
author = {Matache Vasilache ER, Gurau G, Raileanu CR, Zaharescu A, Popa GV, Maftei NM, Busila C, Matei MN, Tutunaru D.},
journal = {Viruses},
year = {2025},
doi = {10.3390/v17040586},
pmid = {40285028}
}
@article{lin65335,
title = {Highlights of the 14th International Bordetella Symposium.},
author = {Munoz Navarrete K, Edwards KM, Mills KHG, Kamanova J, Rodriguez ME, Gorringe A, Preston A, Kampmann B, Gestal MC, Harvill ET, Dubey P, Diavatopoulos DA, Mattoo S, Scanlon KM, Locht C, Sebo P.},
journal = {mSphere},
year = {2025},
doi = {10.1128/msphere.00189-25},
pmid = {40377335}
}
@article{lin65153,
title = {Universal administration of nirsevimab in infants: an analysis of hospitalisations and paediatric intensive care unit admissions for RSV-associated lower respiratory tract infections.},
author = {Bermudez-Barrezueta L, Matias Del Pozo V, Marugan-Miguelsanz JM, Lopez EI, Uribe-Reina P, Romero Del Hombrebueno Y, Morales-Moreno AJ, Rojo-Rello S, Eiros JM, Pino-Vazquez MA.},
journal = {Eur J Pediatr},
year = {2025},
doi = {10.1007/s00431-025-06125-5},
pmid = {40377714}
}
@article{lin65092,
title = {Characterization of genome-wide transpositions induced by colistin exposure in multi-drug-resistant Klebsiella pneumoniae.},
author = {Rajakani SG, Xavier BB, Nguyen NM, Lin Q, Braspenning A, Plantinga NL, Wittekamp BHJ, Zarkotou O, Van Houdt R, Glupczynski Y, Pournaras S, Bonten MJM, Malhotra-Kumar S.},
journal = {Antimicrob Agents Chemother},
year = {2025},
doi = {10.1128/aac.01574-24},
pmid = {40387400}
}
@article{lin65142,
title = {Clinical and Epidemiological Insights into a Parainfluenza Virus Type 3 Outbreak in Multiple Myeloma Patients.},
author = {Timsit S, Mellon G, Forgeard N, Mercier-Delarue S, Mahjoub N, Euzen V, Harel S, Elessa D, Osinski N, Diaz E, Royer B, Arnulf B, Salmona M, Legoff J.},
journal = {J Med Virol},
year = {2025},
doi = {10.1002/jmv.70411},
pmid = {40400394}
}
@article{lin65029,
title = {Clinical characteristics of pediatric parapertussis: A single-center case-control study.},
author = {Okamoto K, Funaki T, Kidokoro S, Ishiguro A, Ogimi C.},
journal = {J Infect Chemother},
year = {2025},
doi = {10.1016/j.jiac.2025.102740},
pmid = {40436250}
}
@article{lin65085,
title = {The utility of syndromic respiratory pathogen panels: the premise of flexible and customizable approaches.},
author = {Norton JM, Dashler G, Klein E, Mostafa HH.},
journal = {J Clin Microbiol},
year = {2025},
doi = {10.1128/jcm.00313-25},
pmid = {40492722}
}
@article{lin65079,
title = {The 2024 resurgence of Bordetella pertussis in Brazil and a decade-long epidemiological overview.},
author = {Sansone NMS, Boschiero MN, Marson FAL.},
journal = {Front Public Health},
year = {2025},
doi = {10.3389/fpubh.2025.1549735},
pmid = {40496447}
}
@article{lin65124,
title = {Long Term Sequelae of Mild RSV Infections in Healthy Children Aged 0-3 Years in the Primary Care Setting-A Prospective Two Year Follow Up Observational Study.},
author = {Ehlmaier P, Voitl P, Riepl A, Lischka L, Voitl JJM, Langer K, Kuzio U, Muhl-Riegler A, Muhl B, Diesner-Treiber SC.},
journal = {J Med Virol},
year = {2025},
doi = {10.1002/jmv.70441},
pmid = {40503876}
}
@article{lin65039,
title = {Pneumonia caused by Bordetella hinzii: A case report.},
author = {Wang L, Yao X, He F, Lv J, Zhou H, Li Q.},
journal = {Infect Med (Beijing)},
year = {2025},
doi = {10.1016/j.imj.2025.100182},
pmid = {40530080}
}
@article{lin65213,
title = {In vivo RNA-seq and infection model reveal the different infection and immune characteristics of B. pertussis strains in China.},
author = {Zuo W, Wei C, He M, Zhang M, Liang J, Ma X, Gao N, Gu Q, Ma Y, Li J, Liu S, Huang Y, Sun M, Shi L.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1547751},
pmid = {40568708}
}
@article{lin65164,
title = {Viral Etiologies of Acute Respiratory Illness in Older Adults and of Congestive Heart Failure and Chronic Obstructive Pulmonary Disease Exacerbations Requiring Hospitalization During 2 Prepandemic Respiratory Seasons.},
author = {Choi C, Ess G, Tippett A, Salazar L, Taylor EG, Ciric C, Reese O, Cheng A, Gibson T, Li W, Hsiao HM, Hellmeister K, Al-Husein Z, Hubler R, Begier E, Liu Q, Uppal S, Kalina WV, Gessner B, Jodar L, Kamidani S, Kao C, Yildirim I, Anderson LJ, Rouphael N, Anderson EJ, Rostad CA.},
journal = {Open Forum Infect Dis},
year = {2025},
doi = {10.1093/ofid/ofaf366},
pmid = {40657165}
}
@article{lin65074,
title = {Benchmarking of bioinformatics tools for the hybrid de novo assembly of human and non-human whole-genome sequencing data.},
author = {Munoz-Barrera A, Rubio-Rodriguez LA, Jaspez D, Corrales A, Marcelino-Rodriguez I, Ortiz L, Mendoza P, Lorenzo-Salazar JM, Gonzalez-Montelongo R, Flores C.},
journal = {Comput Struct Biotechnol J},
year = {2025},
doi = {10.1016/j.csbj.2025.07.020},
pmid = {40703096}
}
@article{lin65096,
title = {Beyond Passive Immunity: Three Neonatal Influenza Cases Highlighting Impact of Missed Maternal Vaccination.},
author = {Profir I, Popescu CM, Popa GV, Nechita A.},
journal = {Clin Pract},
year = {2025},
doi = {10.3390/clinpract15070124},
pmid = {40710034}
}
@article{lin65256,
title = {Nasal-spraying Bacillus spore probiotics for pneumonia in children with respiratory syncytial virus and bacterial co-infections: a randomized clinical trial.},
author = {Thi Le H, Thi Bich Phung T, Thi Bui H, Thi Hong Le H, Tran DM, Nguyen NH, Phan HT, Tran VD, Vu Pham U, Van Phan N, Thu Do H, Nguyen AH, Pham TD, Thi Van Nguyen A.},
journal = {Commun Med (Lond)},
year = {2025},
doi = {10.1038/s43856-025-01029-9},
pmid = {40770421}
}
@article{lin65172,
title = {The virulence regulator bvgS controls nutrient-induced filamentation in Bordetella avium.},
author = {Perslow NG, Meadows-Graves SJ, Luallen RJ.},
journal = {J Bacteriol},
year = {2025},
doi = {10.1128/jb.00030-25},
pmid = {40793751}
}
@article{lin65178,
title = {Shifting respiratory pathogens: Post-COVID-19 trends in community-acquired infections in underserved communities.},
author = {Rafei R, Osman M, Barake BA, Mallat H, Dabboussi F, Hamze M.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0329481},
pmid = {40845032}
}
@article{lin65146,
title = {Knowledge and Attitudes of Parents of School-Aged Children Regarding Vaccinations, and an Analysis of Measles and Pertussis Vaccination Coverage Using the Example of the City of Radomsko in Central Poland.},
author = {Nowicki P, Gorajska M, Garus-Pakowska A.},
journal = {Vaccines (Basel)},
year = {2025},
doi = {10.3390/vaccines13080869},
pmid = {40872954}
}
@article{lin65040,
title = {Age-Dependent Risk of Bronchial Asthma Exacerbation in Respiratory Syncytial Virus Co-infection.},
author = {Arimura K, Kan-O K, Sato Y, Kikuchi K, Miura H, Sato A, Kondo M, Tagaya E.},
journal = {Lung},
year = {2025},
doi = {10.1007/s00408-025-00847-x},
pmid = {40900370}
}
@article{lin65203,
title = {Bordetellae colonization oligosaccharide (b-Cool), a glycan crucial for nasal colonization.},
author = {Su Y, Callender M, Woolsey D, Zhu J, Sedney C, Vu MT, Masters J, Caulfield A, Dewan K, Gaskill E, Stevens R, Joshua A, Evans CM, Glushka J, Vinogradov E, Preston A, Krunkosky T, Bar-Peled M, Harvill ET.},
journal = {Sci Adv},
year = {2025},
doi = {10.1126/sciadv.adw7764},
pmid = {40901963}
}
@article{lin65065,
title = {Case Report: Aspergillus fumigatus-associated plastic bronchitis in a pediatric patient with cystic fibrosis complicated by allergic bronchopulmonary aspergillosis.},
author = {Liu F, Zhao L, Gao Y, Wang X, Zhang H.},
journal = {Front Pediatr},
year = {2025},
doi = {10.3389/fped.2025.1632989},
pmid = {40933694}
}
@article{lin65054,
title = {Combined oropharyngeal nasal (ON) swabs for the molecular detection of respiratory pathogens including M. pneumoniae in symptomatic children.},
author = {Nelson H, Kayda I, Watson N, Kinshella M-LW, Cochrane J, Desai N, Dittrick M, Hoang L, Hawkes MT, Meckler G, Sabhaney V, Gubbay JB, Imperial M, Srigley JA, Li L, Goldfarb DM.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.02181-25},
pmid = {40937765}
}
@article{lin65055,
title = {Positivity analysis of Bordetella spp. and SARS-CoV-2 coinfections in clinical samples from Colombia, 2021-2022.},
author = {Bonilla-Bravo V, Montilla-Escudero E, Castro Martinez X, Rojas F, Duarte C, Aparicio S, Gomez-Rangel SY, Rodriguez Romero P, Bonilla SL, Prieto Alvarado F, Rojas Sotelo J, Rey Benito G.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.01242-25},
pmid = {40938105}
}
@article{lin65064,
title = {Myeloid cell-specific type I interferon signaling mediates age-dependent inflammation and protection in Bordetella pertussis infection.},
author = {Kumar A, Bukowski A, Carbonetti NH.},
journal = {Infect Immun},
year = {2025},
doi = {10.1128/iai.00306-25},
pmid = {40980929}
}
@article{lin65037,
title = {Performance analysis of the GeneXpert respiratory panel prototype assay for the diagnosis of viral and bacterial upper respiratory tract infections.},
author = {Chan LMW, Tang M, Leung ECM, Lee NYY, Chow VCY.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.02560-24},
pmid = {41025658}
}
@article{lin65160,
title = {Changes in virus-related exacerbations of chronic respiratory diseases before and after the relaxation of COVID-19 infection control measures: a single-centre retrospective study in Japan.},
author = {Sasada T, Kishi R, Shirakawa C, Hirabayashi R, Sato Y, Nagata K, Nakagawa A, Tomii K, Ariyoshi K, Tachikawa R.},
journal = {Ther Adv Infect Dis},
year = {2025},
doi = {10.1177/20499361251379981},
pmid = {41048209}
}
@article{lin65052,
title = {Prevalence of Macrolide-Resistant Mycoplasma pneumoniae Infections After the COVID-19 Pandemic in Southern Italy, 2023-2025.},
author = {Centrone F, Accogli M, Melilli R, Marziani A, Orlando VA, Casulli D, Scolamacchia V, Netti N, Sacco D, Sallustio A, Chironna M.},
journal = {Infect Dis Ther},
year = {2025},
doi = {10.1007/s40121-025-01244-w},
pmid = {41057669}
}
@article{lin65101,
title = {From lockdown to recovery: changing patterns of viral infection severity in a pediatric cohort with asthma.},
author = {Jones C, Laws M, Yousuf S, Delo A, Hartzell S, Kinder E, Ingold A, Boyanton BL, Frederick D, Frenner RA, Hathorn E, Mourani PM, Kennedy JL.},
journal = {Front Allergy},
year = {2025},
doi = {10.3389/falgy.2025.1645968},
pmid = {41069989}
}
@article{lin65346,
title = {Pertussis-A Re-Emerging Threat Despite Immunization: An Analysis of Vaccine Effectiveness and Antibiotic Resistance.},
author = {Duda-Madej A, Labaz J, Topola E, Bazan H, Viscardi S.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms26199607},
pmid = {41096873}
}
@article{lin65083,
title = {Epidemiology and Burden of Human Metapneumovirus Among Italian Adults in Outpatient and Inpatient Settings, 2014-2025.},
author = {Domnich A, Panatto D, Paolozzi V, Ogliastro M, Ricucci V, Icardi G, Orsi A.},
journal = {Influenza Other Respir Viruses},
year = {2025},
doi = {10.1111/irv.70175},
pmid = {41115827}
}
@article{lin65061,
title = {Mycoplasma pneumoniae Infections Among Children and Adolescents in Korea, 2014-2024.},
author = {Eun BW, Go U, Chun G, Park MS, Jeon Y, Song S, Lee EH, Lee SG.},
journal = {J Korean Med Sci},
year = {2025},
doi = {10.3346/jkms.2025.40.e253},
pmid = {41120107}
}
@article{lin65143,
title = {Rebound of Respiratory Virus Activity and Seasonality to Pre-Pandemic Patterns.},
author = {Gosert R, Naegele K, Weiss M, Bingisser R, Nickel CH, Meyer J, Siegemund M, Bassetti S, Drager S, Berger CT, Franzek F, Heininger U, Bielicki J, Hirsch HH, Keller PM, Weisser M, Khanna N, Tschudin-Sutter S, Leuzinger K.},
journal = {J Med Virol},
year = {2025},
doi = {10.1002/jmv.70658},
pmid = {41128631}
}
@article{lin65102,
title = {Impact of COVID-19 pandemic on Legionella testing and infection rates in Ontario.},
author = {Peci A, Zhang P, Sullivan A, Li Y, Bi Y, Murphy A, Leibson K, Gubbay JB, Majury A.},
journal = {BMC Public Health},
year = {2025},
doi = {10.1186/s12889-025-24620-0},
pmid = {41136997}
}
@article{lin65093,
title = {Effect of Influenza Vaccination on the Disease Severity and Viral Load Among Adult Outpatients and Inpatients.},
author = {Domnich A, Paolozzi V, Garzillo G, Orsi A, Icardi G.},
journal = {Vaccines (Basel)},
year = {2025},
doi = {10.3390/vaccines13101046},
pmid = {41150433}
}
@article{lin65068,
title = {Bordetella Pertussis in Children: A Retrospective Analysis of the Clinical Impact and the Role of Vaccination.},
author = {Matache Vasilache ER, Gurau G, Stoian VI, Zaharia AE, Ciocoiu M, Maftei NM, Constantinide P, Matei MN, Nechita A, Tutunaru D.},
journal = {Life (Basel)},
year = {2025},
doi = {10.3390/life15101514},
pmid = {41157187}
}
@article{lin65063,
title = {Epidemiological and Clinical Characteristics of Infections in Hospitalized Children During and After the COVID-19 Pandemic.},
author = {Prgomet S, Boban Z, Prgomet S, Boban N.},
journal = {Viruses},
year = {2025},
doi = {10.3390/v17101296},
pmid = {41157568}
}
@article{lin65028,
title = {Performance of a Rapid, Highly Multiplexed Nucleic Acid Detection Assay for Identification of Viral and Bacterial Pathogens from Upper Respiratory Tract Specimens.},
author = {Johnson CL, Dunn JJ.},
journal = {J Appl Lab Med},
year = {2025},
doi = {10.1093/jalm/jfaf144},
pmid = {41159386}
}
@article{lin65070,
title = {Predictors of antibiotic prescription for upper respiratory infections in cancer patients.},
author = {Jang HM, Boumiza A, Lin IH, Shah K, Cintron M, Majeed J, Groeger J, Cohen N, Seo SK.},
journal = {Antimicrob Steward Healthc Epidemiol},
year = {2025},
doi = {10.1017/ash.2025.10180},
pmid = {41180297}
}
@article{lin65056,
title = {Saliva and Anterior Nasal Samples for Detecting Respiratory Viruses in Children.},
author = {Haaramo A, Jaaskelainen A, Pitkaranta A, Kuitunen M, Sanmark E, Nokso-Koivisto J.},
journal = {APMIS},
year = {2025},
doi = {10.1111/apm.70091},
pmid = {41221678}
}
@article{lin65035,
title = {No innocent bystanders: pertussis vaccination and evolutionary parallelisms between Bordetella parapertussis and Bordetella pertussis.},
author = {Bouchez V, Moreno-Mingorance A, Mir-Cros A, Landier A, Armatys N, Guillot S, Martin-Gomez MT, Rodrigues C, Toubiana J, Bento AI, Weigand MR, Gonzalez-Lopez JJ, Brisse S.},
journal = {Microb Genom},
year = {2025},
doi = {10.1099/mgen.0.001544},
pmid = {41237019}
}
@article{lin65075,
title = {Genomic insights into Bordetella pertussis evolution and macrolide resistance in Yiwu, China.},
author = {Xu W, Wei Q, Wu B, Zhu Z, Guan W, Chen G, Xu Z.},
journal = {BMC Genomics},
year = {2025},
doi = {10.1186/s12864-025-12213-5},
pmid = {41249897}
}
@article{lin65095,
title = {Epidemiological and Clinical Changes in RSV-Associated Pneumonia in Children in Mexico Before and During the COVID 19 Pandemic.},
author = {Diaz-Torres IA, Cabrera-Takane ID, Ortega-Vargas FY, Herrera-Gonzalez AA, Garcia-Leon ML, Bautista-Carbajal P, Noyola DE, Juarez-Tobias MS, Martinez-Arce PA, Espinosa-Sotero MDC, Tabla-Orozco V, Martinez-Aguilar G, Rojas-Larios F, Wong-Chew RM.},
journal = {Infect Dis Rep},
year = {2025},
doi = {10.3390/idr17060139},
pmid = {41283343}
}
@article{lin65026,
title = {Clinical characteristics and outcomes of Bordetella parapertussis compared with Bordetella pertussis: a retrospective observational study.},
author = {Kitano T, Kitagawa D, Hashimoto E, Yoshida S.},
journal = {Clin Microbiol Infect},
year = {2025},
doi = {10.1016/j.cmi.2025.11.020},
pmid = {41314606}
}