@article{lin8608,
title = {Alicycliphilus denitrificans gen. nov., sp. nov., a cyclohexanol-degrading, nitrate-reducing beta-proteobacterium.},
author = {Mechichi T, Stackebrandt E, Fuchs G},
journal = {Int J Syst Evol Microbiol},
year = {2003},
doi = {10.1099/ijs.0.02276-0},
pmid = {12661531}
}
@article{lin109222,
title = {Characterization of the polyurethanolytic activity of two Alicycliphilus sp. strains able to degrade polyurethane and N-methylpyrrolidone.},
author = {Oceguera-Cervantes A, Carrillo-Garcia A, Lopez N, Bolanos-Nunez S, Cruz-Gomez MJ, Wacher C, Loza-Tavera H.},
journal = {Appl Environ Microbiol},
year = {2007},
doi = {10.1128/aem.01230-07},
pmid = {17693569}
}
@article{lin109196,
title = {Nitrate-dependent degradation of acetone by Alicycliphilus and Paracoccus strains and comparison of acetone carboxylase enzymes.},
author = {Dullius CH, Chen CY, Schink B.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.05385-11},
pmid = {21841031}
}
@article{lin109191,
title = {Chlorate reduction capacity and characterisation of chlorate reducing bacteria communities in sediments of the rio Cruces wetland in southern Chile.},
author = {Schwarz AO, Urrutia H, Vidal JM, Perez N.},
journal = {Water Res},
year = {2012},
doi = {10.1016/j.watres.2012.03.046},
pmid = {22516175}
}
@article{lin109190,
title = {Transformation of microflora during degradation of gaseous toluene in a biofilter detected using PCR-DGGE.},
author = {Okunishi S, Morita Y, Higuchi T, Maeda H, Nishi K.},
journal = {J Air Waste Manag Assoc},
year = {2012},
doi = {10.1080/10962247.2012.672396},
pmid = {22866576}
}
@article{lin109213,
title = {Anaerobic benzene oxidation by Geobacter species.},
author = {Zhang T, Bain TS, Nevin KP, Barlett MA, Lovley DR.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.02469-12},
pmid = {23001648}
}
@article{lin109189,
title = {Toluene biodegradation rates in unsaturated soil systems versus liquid batches and their relevance to field conditions.},
author = {Picone S, Grotenhuis T, van Gaans P, Valstar J, Langenhoff A, Rijnaarts H.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-012-4480-7},
pmid = {23090052}
}
@article{lin109207,
title = {Anaerobic and aerobic cleavage of the steroid core ring structure by Steroidobacter denitrificans.},
author = {Wang PH, Leu YL, Ismail W, Tang SL, Tsai CY, Chen HJ, Kao AT, Chiang YR.},
journal = {J Lipid Res},
year = {2013},
doi = {10.1194/jlr.m034223},
pmid = {23458847}
}
@article{lin109199,
title = {Genome analysis and physiological comparison of Alicycliphilus denitrificans strains BC and K601(T.).},
author = {Oosterkamp MJ, Veuskens T, Talarico Saia F, Weelink SA, Goodwin LA, Daligault HE, Bruce DC, Detter JC, Tapia R, Han CS, Land ML, Hauser LJ, Langenhoff AA, Gerritse J, van Berkel WJ, Pieper DH, Junca H, Smidt H, Schraa G, Davids M, Schaap PJ, Plugge CM, Stams AJ.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0066971},
pmid = {23825601}
}
@article{lin109215,
title = {Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal.},
author = {Flowers JJ, He S, Malfatti S, del Rio TG, Tringe SG, Hugenholtz P, McMahon KD.},
journal = {ISME J},
year = {2013},
doi = {10.1038/ismej.2013.117},
pmid = {23887171}
}
@article{lin109186,
title = {Metabolic response of Alicycliphilus denitrificans strain BC toward electron acceptor variation.},
author = {Oosterkamp MJ, Boeren S, Plugge CM, Schaap PJ, Stams AJ.},
journal = {Proteomics},
year = {2013},
doi = {10.1002/pmic.201200571},
pmid = {23907812}
}
@article{lin109219,
title = {Carbonylation as a key reaction in anaerobic acetone activation by Desulfococcus biacutus.},
author = {Gutierrez Acosta OB, Hardt N, Schink B.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.02116-13},
pmid = {23913429}
}
@article{lin109209,
title = {Complete nucleotide sequence and analysis of two conjugative broad host range plasmids from a marine microbial biofilm.},
author = {Norberg P, Bergstrom M, Hermansson M.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0092321},
pmid = {24647540}
}
@article{lin109221,
title = {Anoxic androgen degradation by the denitrifying bacterium Sterolibacterium denitrificans via the 2,3-seco pathway.},
author = {Wang PH, Yu CP, Lee TH, Lin CW, Ismail W, Wey SP, Kuo AT, Chiang YR.},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.03880-13},
pmid = {24657867}
}
@article{lin109197,
title = {Michael hydratase alcohol dehydrogenase or just alcohol dehydrogenase?},
author = {Resch V, Jin J, Chen BS, Hanefeld U.},
journal = {AMB Express},
year = {2014},
doi = {10.1186/s13568-014-0030-2},
pmid = {24949265}
}
@article{lin109223,
title = {A new antibiotic kills pathogens without detectable resistance.},
author = {Ling LL, Schneider T, Peoples AJ, Spoering AL, Engels I, Conlon BP, Mueller A, Schaberle TF, Hughes DE, Epstein S, Jones M, Lazarides L, Steadman VA, Cohen DR, Felix CR, Fetterman KA, Millett WP, Nitti AG, Zullo AM, Chen C, Lewis K.},
journal = {Nature},
year = {2015},
doi = {10.1038/nature14098},
pmid = {25561178}
}
@article{lin109200,
title = {A two-phase binning algorithm using l-mer frequency on groups of non-overlapping reads.},
author = {Vinh le V, Lang TV, Binh le T, Hoai TV.},
journal = {Algorithms Mol Biol},
year = {2015},
doi = {10.1186/s13015-014-0030-4},
pmid = {25648210}
}
@article{lin109205,
title = {Role of the horizontal gene exchange in evolution of pathogenic Mycobacteria.},
author = {Reva O, Korotetskiy I, Ilin A.},
journal = {BMC Evol Biol},
year = {2015},
doi = {10.1186/1471-2148-15-s1-s2},
pmid = {25708825}
}
@article{lin109216,
title = {An SOS Regulon under Control of a Noncanonical LexA-Binding Motif in the Betaproteobacteria.},
author = {Sanchez-Alberola N, Campoy S, Emerson D, Barbe J, Erill I.},
journal = {J Bacteriol},
year = {2015},
doi = {10.1128/jb.00035-15},
pmid = {25986903}
}
@article{lin109198,
title = {Inducible gene expression system by 3-hydroxypropionic acid.},
author = {Zhou S, Ainala SK, Seol E, Nguyen TT, Park S.},
journal = {Biotechnol Biofuels},
year = {2015},
doi = {10.1186/s13068-015-0353-5},
pmid = {26500695}
}
@article{lin109217,
title = {The Perchlorate Reduction Genomic Island: Mechanisms and Pathways of Evolution by Horizontal Gene Transfer.},
author = {Melnyk RA, Coates JD.},
journal = {BMC Genomics},
year = {2015},
doi = {10.1186/s12864-015-2011-5},
pmid = {26502901}
}
@article{lin109206,
title = {A newly discovered Bordetella species carries a transcriptionally active CRISPR-Cas with a small Cas9 endonuclease.},
author = {Ivanov YV, Shariat N, Register KB, Linz B, Rivera I, Hu K, Dudley EG, Harvill ET.},
journal = {BMC Genomics},
year = {2015},
doi = {10.1186/s12864-015-2028-9},
pmid = {26502932}
}
@article{lin109220,
title = {Integrated multi-omics analyses reveal the biochemical mechanisms and phylogenetic relevance of anaerobic androgen biodegradation in the environment.},
author = {Yang FC, Chen YL, Tang SL, Yu CP, Wang PH, Ismail W, Wang CH, Ding JY, Yang CY, Yang CY, Chiang YR.},
journal = {ISME J},
year = {2016},
doi = {10.1038/ismej.2015.255},
pmid = {26872041}
}
@article{lin109214,
title = {Shotgun Metagenomic Profiles Have a High Capacity To Discriminate Samples of Activated Sludge According to Wastewater Type.},
author = {Ibarbalz FM, Orellana E, Figuerola EL, Erijman L.},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/aem.00916-16},
pmid = {27316957}
}
@article{lin109185,
title = {Hydrogen-based membrane biofilm reactor for tetracycline removal: biodegradation, transformation products, and microbial community.},
author = {Taskan B, Hanay O, Taskan E, Erdem M, Hasar H.},
journal = {Environ Sci Pollut Res Int},
year = {2016},
doi = {10.1007/s11356-016-7370-1},
pmid = {27522205}
}
@article{lin109183,
title = {Comparison of bacterial community characteristics between complete and shortcut denitrification systems for quinoline degradation.},
author = {Zhang X, Hua X, Yue X.},
journal = {Appl Microbiol Biotechnol},
year = {2017},
doi = {10.1007/s00253-016-7949-y},
pmid = {27853855}
}
@article{lin109210,
title = {Metagenomic Analysis of Hot Springs in Central India Reveals Hydrocarbon Degrading Thermophiles and Pathways Essential for Survival in Extreme Environments.},
author = {Saxena R, Dhakan DB, Mittal P, Waiker P, Chowdhury A, Ghatak A, Sharma VK.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.02123},
pmid = {28105025}
}
@article{lin109218,
title = {High-throughput automated microfluidic sample preparation for accurate microbial genomics.},
author = {Kim S, De Jonghe J, Kulesa AB, Feldman D, Vatanen T, Bhattacharyya RP, Berdy B, Gomez J, Nolan J, Epstein S, Blainey PC.},
journal = {Nat Commun},
year = {2017},
doi = {10.1038/ncomms13919},
pmid = {28128213}
}
@article{lin109203,
title = {Serpentinization-Influenced Groundwater Harbors Extremely Low Diversity Microbial Communities Adapted to High pH.},
author = {Twing KI, Brazelton WJ, Kubo MD, Hyer AJ, Cardace D, Hoehler TM, McCollom TM, Schrenk MO.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00308},
pmid = {28298908}
}
@article{lin109212,
title = {Sodium lauryl ether sulfate (SLES) degradation by nitrate-reducing bacteria.},
author = {Paulo AMS, Aydin R, Dimitrov MR, Vreeling H, Cavaleiro AJ, Garcia-Encina PA, Stams AJM, Plugge CM.},
journal = {Appl Microbiol Biotechnol},
year = {2017},
doi = {10.1007/s00253-017-8212-x},
pmid = {28299401}
}
@article{lin109184,
title = {Effects of toxic organic flotation reagent (aniline aerofloat) on an A/O submerged membrane bioreactor (sMBR): Microbial community dynamics and performance.},
author = {Lin W, Sun S, Wu C, Xu P, Ye Z, Zhuang S.},
journal = {Ecotoxicol Environ Saf},
year = {2017},
doi = {10.1016/j.ecoenv.2017.03.033},
pmid = {28384499}
}
@article{lin109187,
title = {Dakarella massiliensis gen. nov., sp. nov., strain ND3T: a new bacterial genus isolated from the female genital tract.},
author = {Dione N, Rathored J, Tomei E, Lagier JC, Khelaifia S, Robert C, Bretelle F, Raoult D, Fournier PE, Fenollar F.},
journal = {New Microbes New Infect},
year = {2017},
doi = {10.1016/j.nmni.2017.05.003},
pmid = {28603641}
}
@article{lin109208,
title = {Time-resolved analysis of a denitrifying bacterial community revealed a core microbiome responsible for the anaerobic degradation of quinoline.},
author = {Wang Y, Tian H, Huang F, Long W, Zhang Q, Wang J, Zhu Y, Wu X, Chen G, Zhao L, Bakken LR, Frostegard A, Zhang X.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-15122-0},
pmid = {29116183}
}
@article{lin109204,
title = {Microbial communities associated with the co-metabolism of free cyanide and thiocyanate under alkaline conditions.},
author = {Mekuto L, Ntwampe SKO, Mudumbi JBN.},
journal = {3 Biotech},
year = {2018},
doi = {10.1007/s13205-018-1124-3},
pmid = {29430355}
}
@article{lin109181,
title = {Comprehensive evaluation of autohydrogenotrophic membrane biofilm reactor treating OTC-enriched water medium.},
author = {Celik A, Tunc MS, Hanay O, Taskan E, Hasar H.},
journal = {Bioprocess Biosyst Eng},
year = {2018},
doi = {10.1007/s00449-018-1954-8},
pmid = {29766261}
}
@article{lin109211,
title = {Relationships Between Copper-Related Proteomes and Lifestyles in beta Proteobacteria.},
author = {Antoine R, Rivera-Millot A, Roy G, Jacob-Dubuisson F.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.02217},
pmid = {31608037}
}
@article{lin109201,
title = {Heterologous expression of the gene for chlorite dismutase from Ideonella dechloratans is induced by an FNR-type transcription factor.},
author = {Rova M, Hellberg Lindqvist M, Goetelen T, Blomqvist S, Nilsson T.},
journal = {Microbiologyopen},
year = {2020},
doi = {10.1002/mbo3.1049},
pmid = {32319739}
}
@article{lin109202,
title = {Sierra Nevada sweep: metagenomic measurements of bioaerosols vertically distributed across the troposphere.},
author = {Jaing C, Thissen J, Morrison M, Dillon MB, Waters SM, Graham GT, Be NA, Nicoll P, Verma S, Caro T, Smith DJ.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-69188-4},
pmid = {32709938}
}
@article{lin109177,
title = {Nitric oxide and nitrite removal by partial denitrifying hollow-fiber membrane biofilm reactor coupled with nitrous oxide generation as energy recovery.},
author = {Yu KH, Can F, Ergenekon P.},
journal = {Environ Technol},
year = {2022},
doi = {10.1080/09593330.2021.1910348},
pmid = {33779527}
}
@article{lin109195,
title = {Genomic Analysis of Carbapenem-Resistant Comamonas in Water Matrices: Implications for Public Health and Wastewater Treatments.},
author = {Hem S, Wyrsch ER, Drigo B, Baker DJ, Charles IG, Donner E, Jarocki VM, Djordjevic SP.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.00646-22},
pmid = {35708324}
}
@article{lin109192,
title = {Electrochemical and Microbial Dissection of Electrified Biotrickling Filters.},
author = {Korth B, Pous N, Honig R, Haus P, Correa FB, Nunes da Rocha U, Puig S, Harnisch F.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.869474},
pmid = {35711746}
}
@article{lin109193,
title = {Inoculation effect of Pseudomonas sp. TF716 on N2O emissions during rhizoremediation of diesel-contaminated soil.},
author = {Kim JY, Cho KS.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-17356-z},
pmid = {35906374}
}
@article{lin109175,
title = {Exploring the Functions of Efficient Canonical Denitrifying Bacteria as N2O Sinks: Implications from 15N Tracer and Transcriptome Analyses.},
author = {Oba K, Suenaga T, Kuroiwa M, Riya S, Terada A.},
journal = {Environ Sci Technol},
year = {2022},
doi = {10.1021/acs.est.2c02119},
pmid = {35917165}
}
@article{lin109188,
title = {Microbial paracetamol degradation involves a high diversity of novel amidase enzyme candidates.},
author = {Rios-Miguel AB, Smith GJ, Cremers G, van Alen T, Jetten MSM, Op den Camp HJM, Welte CU.},
journal = {Water Res X},
year = {2022},
doi = {10.1016/j.wroa.2022.100152},
pmid = {36042984}
}
@article{lin109180,
title = {Longitudinal analysis of exposure to a low concentration of oxytetracycline on the zebrafish gut microbiome.},
author = {Kayani MUR, Yu K, Qiu Y, Yu X, Chen L, Huang L.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.985065},
pmid = {36212820}
}
@article{lin109194,
title = {A cross-sectional study identifying disparities in serum metabolic profiles among hypertensive patients with ISH, IDH and SDH subtypes.},
author = {Shen Y, Wang P, Yang X, Chen M, Dong Y, Li J.},
journal = {Front Cardiovasc Med},
year = {2023},
doi = {10.3389/fcvm.2023.1102754},
pmid = {37215555}
}
@article{lin109173,
title = {Metabolic mechanism of Cr(VI) pollution remediation by Alicycliphilus denitrificans Ylb10.},
author = {Wang Y, Zhou Z, Zhang W, Guo J, Li N, Zhang Y, Gong D, Lyu Y.},
journal = {Sci Total Environ},
year = {2024},
doi = {10.1016/j.scitotenv.2023.169135},
pmid = {38070572}
}
@article{lin109182,
title = {Groundwater chromate removal by autotrophic sulfur disproportionation.},
author = {Qiu YY, Xia J, Guo J, Gong X, Zhang L, Jiang F.},
journal = {Environ Sci Ecotechnol},
year = {2024},
doi = {10.1016/j.ese.2024.100399},
pmid = {38469364}
}
@article{lin109176,
title = {Rational design of a cyclohexanone dehydrogenase for enhanced alpha,beta-desaturation and substrate specificity.},
author = {Singh W, Brown NL, McCue HV, Marriott SR, Wilson RC, Perry J, Turkenburg JP, Dubey KD, Prior SH, Carnell AJ, Taylor EJ, Black GW.},
journal = {Chem Sci},
year = {2024},
doi = {10.1039/d3sc04009g},
pmid = {38550701}
}
@article{lin109179,
title = {Metagenomic Analysis of Surface Waters and Wastewater in the Colombian Andean Highlands: Implications for Health and Disease.},
author = {Urrea V, Paez-Triana L, Velasquez-Ortiz N, Camargo M, Patino LH, Vega L, Ballesteros N, Hidalgo-Troya A, Galeano LA, Ramirez JD, Munoz M.},
journal = {Curr Microbiol},
year = {2025},
doi = {10.1007/s00284-024-04019-7},
pmid = {40021498}
}
@article{lin109174,
title = {Granular activated carbon (GAC)-driven microbial electron shuttle boosts denitrification and mitigates N2O in cold and carbon-limited biofilm system.},
author = {Yang X, Yao M, Li P, van der Hoek JP, Zhang L, Liu G.},
journal = {Microbiome},
year = {2025},
doi = {10.1186/s40168-025-02161-3},
pmid = {40751169}
}
@article{lin109178,
title = {Metagenomic analysis of blood microbiota alterations: insights into HIV progression and immune restoration.},
author = {Chen Y, Zhang R, Wen J, Zhao J, Zhang J.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1619059},
pmid = {41189709}
}