@article{lin106655,
title = {Clostridium sardiniense Prévot 1938 and Clostridium absonum Nakamura et al. 1973 are heterotypic synonyms: evidence from phylogenetic analyses of phospholipase C and 16S rRNA sequences, and DNA relatedness.},
author = {Wang X, Maegawa T, Karasawa T, Ozaki E, Nakamura S.},
journal = {Int J Syst Evol Microbiol},
year = {2005},
doi = {10.1099/ijs.0.63271-0},
pmid = {15879254}
}
@article{lin106679,
title = {Acid phosphatase test proves superior to standard phenotypic identification procedure for Clostridium perfringens strains isolated from water.},
author = {Ryzinska-Paier G, Sommer R, Haider JM, Knetsch S, Frick C, Kirschner AK, Farnleitner AH.},
journal = {J Microbiol Methods},
year = {2011},
doi = {10.1016/j.mimet.2011.08.006},
pmid = {21872622}
}
@article{lin106685,
title = {Pyrosequencing of 16S rRNA genes in fecal samples reveals high diversity of hindgut microflora in horses and potential links to chronic laminitis.},
author = {Steelman SM, Chowdhary BP, Dowd S, Suchodolski J, Janecka JE.},
journal = {BMC Vet Res},
year = {2012},
doi = {10.1186/1746-6148-8-231},
pmid = {23186268}
}
@article{lin106658,
title = {Comprehensive Laboratory Evaluation of a Highly Specific Lateral Flow Assay for the Presumptive Identification of Bacillus anthracis Spores in Suspicious White Powders and Environmental Samples.},
author = {Ramage JG, Prentice KW, DePalma L, Venkateswaran KS, Chivukula S, Chapman C, Bell M, Datta S, Singh A, Hoffmaster A, Sarwar J, Parameswaran N, Joshi M, Thirunavkkarasu N, Krishnan V, Morse S, Avila JR, Sharma S, Estacio PL, Stanker L, Hodge DR, Pillai SP.},
journal = {Health Secur},
year = {2016},
doi = {10.1089/hs.2016.0041},
pmid = {27661796}
}
@article{lin106668,
title = {Cloning, expression, and biochemical characterization of a novel NADP+-dependent 7alpha-hydroxysteroid dehydrogenase from Clostridium difficile and its application for the oxidation of bile acids.},
author = {Bakonyi D, Hummel W.},
journal = {Enzyme Microb Technol},
year = {2017},
doi = {10.1016/j.enzmictec.2016.12.006},
pmid = {28193327}
}
@article{lin106681,
title = {Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors.},
author = {Kiu R, Caim S, Alexander S, Pachori P, Hall LJ.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.02485},
pmid = {29312194}
}
@article{lin106678,
title = {NAD+ -Dependent Enzymatic Route for the Epimerization of Hydroxysteroids.},
author = {Tonin F, Otten LG, Arends IWCE.},
journal = {ChemSusChem},
year = {2019},
doi = {10.1002/cssc.201801862},
pmid = {30265441}
}
@article{lin106676,
title = {Multidisciplinary evaluation of Clostridium butyricum clonality isolated from preterm neonates with necrotizing enterocolitis in South France between 2009 and 2017.},
author = {Hosny M, Bou Khalil JY, Caputo A, Abdallah RA, Levasseur A, Colson P, Cassir N, La Scola B.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-38773-7},
pmid = {30765857}
}
@article{lin106657,
title = {Comprehensive Laboratory Evaluation of a Lateral Flow Assay for the Detection of Yersinia pestis.},
author = {Prentice KW, DePalma L, Ramage JG, Sarwar J, Parameswaran N, Petersen J, Yockey B, Young J, Joshi M, Thirunavvukarasu N, Singh A, Chapman C, Avila JR, Pillai CA, Manickam G, Sharma SK, Morse SA, Venkateswaran KV, Anderson K, Hodge DR, Pillai SP.},
journal = {Health Secur},
year = {2019},
doi = {10.1089/hs.2019.0094},
pmid = {31859568}
}
@article{lin106656,
title = {Comprehensive Laboratory Evaluation of a Specific Lateral Flow Assay for the Presumptive Identification of Francisella tularensis in Suspicious White Powders and Aerosol Samples.},
author = {Pillai SP, DePalma L, Prentice KW, Ramage JG, Chapman C, Sarwar J, Parameswaran N, Petersen J, Yockey B, Young J, Singh A, Pillai CA, Manickam G, Thirunavkkarasu N, Avila JR, Sharma S, Morse SA, Venkateswaran K, Anderson K, Hodge DR.},
journal = {Health Secur},
year = {2020},
doi = {10.1089/hs.2019.0151},
pmid = {32324068}
}
@article{lin106672,
title = {Studies on Trueperella pyogenes isolated from an okapi (Okapia johnstoni) and a royal python (Python regius).},
author = {Ahmed MFE, Alssahen M, Lammler C, Eisenberg T, Plotz M, Abdulmawjood A.},
journal = {BMC Vet Res},
year = {2020},
doi = {10.1186/s12917-020-02508-y},
pmid = {32795301}
}
@article{lin106686,
title = {A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity.},
author = {Wylensek D, Hitch TCA, Riedel T, Afrizal A, Kumar N, Wortmann E, Liu T, Devendran S, Lesker TR, Hernandez SB, Heine V, Buhl EM, M D'Agostino P, Cumbo F, Fischoder T, Wyschkon M, Looft T, Parreira VR, Abt B, Doden HL, Ly L, Alves JMP, Reichlin M, Flisikowski K, Suarez LN, Neumann AP, Suen G, de Wouters T, Rohn S, Lagkouvardos I, Allen-Vercoe E, Sproer C, Bunk B, Taverne-Thiele AJ, Giesbers M, Wells JM, Neuhaus K, Schnieke A, Cava F, Segata N, Elling L, Strowig T, Ridlon JM, Gulder TAM, Overmann J, Clavel T.},
journal = {Nat Commun},
year = {2020},
doi = {10.1038/s41467-020-19929-w},
pmid = {33319778}
}
@article{lin106680,
title = {Trehalose-Induced Remodelling of the Human Microbiota Affects Clostridioides difficile Infection Outcome in an In Vitro Colonic Model: A Pilot Study.},
author = {Buckley AM, Moura IB, Arai N, Spittal W, Clark E, Nishida Y, Harris HC, Bentley K, Davis G, Wang D, Mitra S, Higashiyama T, Wilcox MH.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.670935},
pmid = {34277467}
}
@article{lin106662,
title = {Clostridium chrysemydis sp. nov., isolated from the faecal material of a painted turtle.},
author = {Hunter KC, Lawson PA, Dowd SE, McLaughlin RW.},
journal = {Int J Syst Evol Microbiol},
year = {2021},
doi = {10.1099/ijsem.0.005023},
pmid = {34569920}
}
@article{lin106683,
title = {Predictive regulatory and metabolic network models for systems analysis of Clostridioides difficile.},
author = {Arrieta-Ortiz ML, Immanuel SRC, Turkarslan S, Wu WJ, Girinathan BP, Worley JN, DiBenedetto N, Soutourina O, Peltier J, Dupuy B, Bry L, Baliga NS.},
journal = {Cell Host Microbe},
year = {2021},
doi = {10.1016/j.chom.2021.09.008},
pmid = {34637780}
}
@article{lin106670,
title = {In vivo commensal control of Clostridioides difficile virulence.},
author = {Girinathan BP, DiBenedetto N, Worley JN, Peltier J, Arrieta-Ortiz ML, Immanuel SRC, Lavin R, Delaney ML, Cummins CK, Hoffman M, Luo Y, Gonzalez-Escalona N, Allard M, Onderdonk AB, Gerber GK, Sonenshein AL, Baliga NS, Dupuy B, Bry L.},
journal = {Cell Host Microbe},
year = {2021},
doi = {10.1016/j.chom.2021.09.007},
pmid = {34637781}
}
@article{lin106684,
title = {Negative interactions determine Clostridioides difficile growth in synthetic human gut communities.},
author = {Hromada S, Qian Y, Jacobson TB, Clark RL, Watson L, Safdar N, Amador-Noguez D, Venturelli OS.},
journal = {Mol Syst Biol},
year = {2021},
doi = {10.15252/msb.202110355},
pmid = {34693621}
}
@article{lin106682,
title = {Gut metabolites predict Clostridioides difficile recurrence.},
author = {Dawkins JJ, Allegretti JR, Gibson TE, McClure E, Delaney M, Bry L, Gerber GK.},
journal = {Microbiome},
year = {2022},
doi = {10.1186/s40168-022-01284-1},
pmid = {35681218}
}
@article{lin106664,
title = {Can we microbe-manage our vitamin acquisition for better health?},
author = {Nysten J, Van Dijck P.},
journal = {PLoS Pathog},
year = {2023},
doi = {10.1371/journal.ppat.1011361},
pmid = {37200232}
}
@article{lin106667,
title = {Clostridioides difficile infection: microbe-microbe interactions and live biotherapeutics.},
author = {Wang R.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1182612},
pmid = {37228365}
}
@article{lin106671,
title = {Butyrate enhances Clostridioides difficile sporulation in vitro.},
author = {Baldassare MA, Bhattacharjee D, Coles JD, Nelson S, McCollum CA, Seekatz AM.},
journal = {J Bacteriol},
year = {2023},
doi = {10.1128/jb.00138-23},
pmid = {37655912}
}
@article{lin106665,
title = {Comparative analysis of gut microbiota between common (Macaca fascicularis fascicularis) and Burmese (M. f. aurea) long-tailed macaques in different habitats.},
author = {Muhammad R, Klomkliew P, Chanchaem P, Sawaswong V, Kaikaew T, Payungporn S, Malaivijitnond S.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-42220-z},
pmid = {37696929}
}
@article{lin106675,
title = {Multi-omics analysis of hospital-acquired diarrhoeal patients reveals biomarkers of enterococcal proliferation and Clostridioides difficile infection.},
author = {Bosnjak M, Karpe AV, Van TTH, Kotsanas D, Jenkin GA, Costello SP, Johanesen P, Moore RJ, Beale DJ, Srikhanta YN, Palombo EA, Larcombe S, Lyras D.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-43671-8},
pmid = {38007555}
}
@article{lin106677,
title = {A commensal protozoan attenuates Clostridioides difficile pathogenesis in mice via arginine-ornithine metabolism and host intestinal immune response.},
author = {Yang H, Wu X, Li X, Zang W, Zhou Z, Zhou Y, Cui W, Kou Y, Wang L, Hu A, Wu L, Yin Z, Chen Q, Chen Y, Huang Z, Wang Y, Gu B.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-47075-0},
pmid = {38565558}
}
@article{lin106673,
title = {A green strategy to produce potential substitute resource for bear bile using engineered Saccharomyces cerevisiae.},
author = {Jin L, Yang L, Zhao S, Wang Z.},
journal = {Bioresour Bioprocess},
year = {2022},
doi = {10.1186/s40643-022-00517-3},
pmid = {38647767}
}
@article{lin106669,
title = {Clostridioides difficile exploits xanthine and uric acid as nutrients by utilizing a selenium-dependent catabolic pathway.},
author = {Johnstone MA, Self WT.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.00844-24},
pmid = {39166854}
}
@article{lin106674,
title = {Metagenomic, metabolomic, and lipidomic shifts associated with fecal microbiota transplantation for recurrent Clostridioides difficile infection.},
author = {McMillan AS, Zhang G, Dougherty MK, McGill SK, Gulati AS, Baker ES, Theriot CM.},
journal = {mSphere},
year = {2024},
doi = {10.1128/msphere.00706-24},
pmid = {39377587}
}
@article{lin106666,
title = {Multi-omics analysis reveals the core microbiome and biomarker for nutrition degradation in alfalfa silage fermentation.},
author = {Wang Y, Sun Y, Huang K, Gao Y, Lin Y, Yuan B, Wang X, Xu G, Nussio LG, Yang F, Ni K.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00682-24},
pmid = {39440963}
}
@article{lin106661,
title = {Effects of Selenium Application on Fermentation Quality, Chemical Composition, and Bacterial Community of Hybrid Pennisetum Silage.},
author = {Chen X, Qiu S, Huang L, Yang Y, Huang X, Huang X, Feng D.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12112144},
pmid = {39597534}
}
@article{lin106660,
title = {Size Distribution and Pathogenic Potential of Culturable Airborne Clostridium spp. in a Suburb of Toyama City, Japan.},
author = {Seki M, Iwamoto R, Hou J, Fujiyoshi S, Maruyama F, Furusawa Y, Kagaya S, Sakatoku A, Nakamura S, Tanaka D.},
journal = {Microbes Environ},
year = {2025},
doi = {10.1264/jsme2.me24078},
pmid = {39909442}
}
@article{lin106663,
title = {Investigating the gut bacteria structure and function of hibernating bats through 16S rRNA high-throughput sequencing and culturomics.},
author = {Zhou J, Liu Y, Gu T, Zhou J, Chen F, Li S.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.01463-24},
pmid = {40202348}
}
@article{lin106659,
title = {Chicken Manure as a Sustainable Bile Acid Source for Biotechnological Applications.},
author = {Holert J, Wilhelm R, Henker J, Reinker CA, Muller FM, Philipp B.},
journal = {Microb Biotechnol},
year = {2025},
doi = {10.1111/1751-7915.70178},
pmid = {40485088}
}