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title = {The proton-translocating adenosine triphosphatase of the obligately anaerobic bacterium Clostridium pasteurianum. 1. ATP phosphohydrolase activity.},
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title = {Properties and function of clostridial membrane ATPase.},
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title = {Partial purification of a dicyclohexylcarbodi-imide-sensitive membrane adenosine triphosphatase complex from the obligately anaerobic bacterium Clostridium Pasteurianum.},
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title = {Nitrogenases from Klebsiella pneumoniae and Clostridium pasteurianum. Kinetic investigations of cross-reactions as a probe of the enzyme mechanism.},
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title = {[Number of butyric acid bacteria belonging to the genus Clostridium in the slimy sediments of Volga reservoirs].},
author = {Dziuban AN.},
journal = {Mikrobiologiia},
year = {1978},
pmid = {154608}
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title = {The iron electron-nuclear double resonance (ENDOR) of 4-Fe clusters in iron-sulfur proteins from Chromatium and Clostridium pasteurianum.},
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title = {Nitrogenase from Azotobacter chroococcum. Purification and properties of the component proteins.},
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year = {1975},
doi = {10.1111/j.1432-1033.1975.tb21025.x},
pmid = {173545}
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title = {Oxidation-reduction properties of several low potential iron-sulfur proteins and of methylviologen.},
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journal = {Biochemistry},
year = {1976},
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title = {The iron-sulfur centers and the function of hydrogenase from Clostridium pasteurianum.},
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title = {Direct assignment of the cysteinyl, the slowly exchangeable, and the aromatic ring 1H nuclear magnetic resonances in clostridial-type ferredoxins.},
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title = {Nitrogenase X: Mössbauer and EPR studies on reversibly oxidized MoFe protein from Azotobacter vinelandii OP. Nature of the iron centers.},
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year = {1978},
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title = {Determination of cooperative interaction between clusters in Clostridium pasteurianum 2 (4Fe-4S) ferredoxin.},
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title = {Oxidative inactivation of the molybdenum-iron-protein component of nitrogenase from clostridium pasteurianum.},
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year = {1979},
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title = {Iron-sulfur clusters in the molybdenum-iron protein component of nitrogenase. Electron paramagnetic resonance of the carbon monoxide inhibited state.},
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@article{lin105382,
title = {The electron spin relaxation of the electron acceptors of photosystem I reaction centre studied by microwave power saturation.},
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journal = {Biochim Biophys Acta},
year = {1979},
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pmid = {228715}
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@article{lin105330,
title = {Stable isotope fractionation by Clostridium pasteurianum. 1. 34S/32S: inverse isotope effects during SO4-2- and SO3-2- reduction.},
author = {McCready RG, Laishley EJ, Krouse HR.},
journal = {Can J Microbiol},
year = {1975},
doi = {10.1139/m75-034},
pmid = {234781}
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@article{lin104674,
title = {Psychrophilic, mesophilic, and thermophilic triosephosphate isomerases from three clostridial species.},
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journal = {J Bacteriol},
year = {1975},
doi = {10.1128/jb.122.1.177-184.1975},
pmid = {235509}
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@article{lin105367,
title = {Kinetics and properties of beta-ketothiolase from Clostridium pasteurianum.},
author = {Berndt H, Schlegel HG.},
journal = {Arch Microbiol},
year = {1975},
doi = {10.1007/bf00436325},
pmid = {240336}
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@article{lin105325,
title = {The active species of 'CO2' utilized by reduced ferredoxin:CO2 oxidoreductase from Clostridium pasteurianum.},
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journal = {Eur J Biochem},
year = {1975},
doi = {10.1111/j.1432-1033.1975.tb02143.x},
pmid = {240689}
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@article{lin105354,
title = {Reduced ferredoxin: CO2 oxidoreductase from Clostridium pasteurianum. Effect of ligands to transition metals on the activity and the stability of the enzyme.},
author = {Thauer RK, Fuchs G, Kaufer B.},
journal = {Hoppe Seylers Z Physiol Chem},
year = {1975},
doi = {10.1515/bchm2.1975.356.s1.653},
pmid = {241689}
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title = {A rationale for stabilization of oxygen-labile enzymes: application to a clostridial hydrogenase.},
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journal = {Proc Natl Acad Sci U S A},
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@article{lin105462,
title = {Cluster characterization in iron-sulfur proteins by magnetic circular dichroism.},
author = {Stephens PJ, Thomson AJ, Keiderling TA, Rawlings J, Rao KK, Hall DO.},
journal = {Proc Natl Acad Sci U S A},
year = {1978},
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pmid = {281679}
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@article{lin105540,
title = {Identification of iron-sulfur centers in the iron-molybdenum proteins of nitrogenase.},
author = {Kurtz DM, McMillan RS, Burgess BK, Mortenson LE, Holm RH.},
journal = {Proc Natl Acad Sci U S A},
year = {1979},
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@article{lin104677,
title = {Conservation of ribosomal protein binding sites in prokaryotic 16S RNAs.},
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journal = {Proc Natl Acad Sci U S A},
year = {1978},
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@article{lin105267,
title = {The interaction of polymeric viologens with hydrogenases from Desulfovibrio desulfuricans and Clostridium pasteurianum.},
author = {Glick BR, Martin WG, Giroux JJ, Williams RE.},
journal = {Can J Biochem},
year = {1979},
doi = {10.1139/o79-140},
pmid = {396014}
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@article{lin105568,
title = {Isolation of an iron-molybdenum cofactor from nitrogenase.},
author = {Shah VK, Brill WJ.},
journal = {Proc Natl Acad Sci U S A},
year = {1977},
doi = {10.1073/pnas.74.8.3249},
pmid = {410019}
}
@article{lin105273,
title = {Ferredoxin degradation in growing Clostridium pasteurianum during periods of iron deprivation.},
author = {Schonheit P, Brandis A, Thauer RK.},
journal = {Arch Microbiol},
year = {1979},
doi = {10.1007/bf00413277},
pmid = {426601}
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@article{lin105376,
title = {Structural homologies in alanine-rich acidic ribosomal proteins from procaryotes and eucaryotes.},
author = {Visentin LP, Yaguchi M, Matheson AT.},
journal = {Can J Biochem},
year = {1979},
doi = {10.1139/o79-090},
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@article{lin105255,
title = {Thiosulfate formation and associated isotope effects during sulfite reduction by Clostridium pasteurianum.},
author = {Chambers LA, Trudinger PA.},
journal = {Can J Microbiol},
year = {1979},
doi = {10.1139/m79-104},
pmid = {476549}
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@article{lin105415,
title = {Mechanism of formation, spectrum and reactivity of half-reduced eight-iron Clostridium pasteurianum ferredoxin in pulse-radiolysis studies and the non-co-operativity of the four-iron clusters.},
author = {Butler J, Henderson RA, Armstrong FA, Sykes AG.},
journal = {Biochem J},
year = {1979},
doi = {10.1042/bj1830471},
pmid = {534509}
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@article{lin105416,
title = {Studies on some characteristics of hydrogen production by cell-free extracts of rumen anaerobic bacteria.},
author = {Joyner AE, Winter WT, Godbout DM.},
journal = {Can J Microbiol},
year = {1977},
doi = {10.1139/m77-051},
pmid = {558042}
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@article{lin105294,
title = {The amino acid sequence of Clostridium pasteurianum iron protein, a component of nitrogenase. I. Tryptic peptides.},
author = {Tanaka M, Haniu M, Yasunobu KT.},
journal = {J Biol Chem},
year = {1977},
doi = {10.1016/s0021-9258(19)66937-1},
pmid = {561781}
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@article{lin105328,
title = {The amino acid sequence of Clostridium pasteurianum iron protein, a component of nitrogenase. II. Cyanogen bromide peptides.},
author = {Tanaka M, Haniu M, Yasunobu KT.},
journal = {J Biol Chem},
year = {1977},
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pmid = {561782}
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@article{lin105372,
title = {Metabolic products of microorganisms. 170. On the antibiotic activity of cladosporin.},
author = {Anke H, Zahner H.},
journal = {Arch Microbiol},
year = {1978},
doi = {10.1007/bf00417848},
pmid = {646581}
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@article{lin105380,
title = {Nitrogenase: the reaction between the Fe protein and bathophenanthrolinedisulfonate as a probe for interactions with MgATP.},
author = {Ljones T, Burris RH.},
journal = {Biochemistry},
year = {1978},
doi = {10.1021/bi00603a010},
pmid = {656366}
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@article{lin105286,
title = {Stable isotope fractionation by Clostridium pasteurianum. 2. Regulation of sulfite reductases by sulfur amino acids and their influence on sulfur isotope fractionation during SO32- and SO42- reduction.},
author = {Laishley EJ, Krouse HR.},
journal = {Can J Microbiol},
year = {1978},
doi = {10.1139/m78-120},
pmid = {667738}
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@article{lin105384,
title = {Regulatory properties of the nitrogenase from Rhodopseudomonas palustris.},
author = {Zumft WG, Castillo F.},
journal = {Arch Microbiol},
year = {1978},
doi = {10.1007/bf00689351},
pmid = {678011}
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@article{lin105368,
title = {The evolution of protein sequences by repetitious gene duplication: clostridial flavodoxin.},
author = {Kobayashi K, Fox JL.},
journal = {J Mol Evol},
year = {1978},
doi = {10.1007/bf01734484},
pmid = {691074}
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@article{lin105279,
title = {Assignment of the cysteinyl 13C nuclear magnetic resonances and comparison of other aliphatic amino acid resonances of Clostridium acidi-urici, Clostridium pasteurianum, and Peptococcus aerogenes ferredoxins.},
author = {Packer EL, Rabinowitz JC, Sternlicht H.},
journal = {J Biol Chem},
year = {1978},
doi = {10.1016/s0021-9258(17)34429-0},
pmid = {701285}
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@article{lin105391,
title = {Circular dichroism and magnetic circular dichroism of iron-sulfur proteins.},
author = {Stephens PJ, Thomson AJ, Dunn JB, Keiderling TA, Rawlings J, Rao KK, Hall DO.},
journal = {Biochemistry},
year = {1978},
doi = {10.1021/bi00615a026},
pmid = {728385}
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@article{lin105293,
title = {Nitrogenase: properties of the catalytically inactive complex between the Azotobacter vinelandii MoFe protein and the Clostridium pasteurianum Fe protein.},
author = {Emerich DW, Ljones T, Burris RH.},
journal = {Biochim Biophys Acta},
year = {1978},
doi = {10.1016/0005-2744(78)90350-9},
pmid = {728444}
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@article{lin105339,
title = {Isolation of thiomolybdate compounds from the molybdenum-iron protein of clostridial nitrogenase.},
author = {Zumft WG.},
journal = {Eur J Biochem},
year = {1978},
doi = {10.1111/j.1432-1033.1978.tb12686.x},
pmid = {729574}
}
@article{lin105385,
title = {The apparent ATP requirement for nitrogen fixation in growing Klebsiella pneumoniae.},
author = {Hill S.},
journal = {J Gen Microbiol},
year = {1976},
doi = {10.1099/00221287-95-2-297},
pmid = {784906}
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@article{lin105426,
title = {Specificity of bacterial ribosomes and messenger ribonucleic acids in protein synthesis reactions in vitro.},
author = {Stallcup MR, Sharrock WJ, Rabinowitz JC.},
journal = {J Biol Chem},
year = {1976},
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@article{lin105405,
title = {Comparative immunochemistry of bacterial, algal and plant ferredoxins.},
author = {Tel-Or E, Cammack R, Rao KK, Rogers LJ, Stewart WD, Hall DO.},
journal = {Biochim Biophys Acta},
year = {1977},
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pmid = {836867}
}
@article{lin105301,
title = {Evidence for separate enzymes of pyruvate decarboxylation and pyruvate synthesis in soluble extracts of Clostridium pasteurianum.},
author = {Bush RS, Sauer FD.},
journal = {J Biol Chem},
year = {1977},
doi = {10.1016/s0021-9258(17)40508-4},
pmid = {856798}
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@article{lin104678,
title = {A four-iron, four-sulfide ferredoxin with high thermostability from Clostridium thermoaceticum.},
author = {Yang SS, Ljungdahl LG, LeGall J.},
journal = {J Bacteriol},
year = {1977},
doi = {10.1128/jb.130.3.1084-1090.1977},
pmid = {863852}
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@article{lin105383,
title = {Phylogenetic studies of two rubredoxins from sulfate reducing bacteria.},
author = {Vogel H, Bruschi M, Le Gall J.},
journal = {J Mol Evol},
year = {1977},
doi = {10.1007/bf01732743},
pmid = {864718}
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@article{lin105551,
title = {The iron-sulfur environment in rubredoxin.},
author = {Bunker B, Stern EA.},
journal = {Biophys J},
year = {1977},
doi = {10.1016/s0006-3495(77)85585-9},
pmid = {890038}
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@article{lin105290,
title = {The intracellular reserve polysaccharide of Clostridium pasteurianum.},
author = {Darvill AG, Hall MA, Fish JP, Morris JG.},
journal = {Can J Microbiol},
year = {1977},
doi = {10.1139/m77-141},
pmid = {890606}
}
@article{lin104663,
title = {Hydrogenase activity and the H2-fumarate electron transport system in Bacteroides fragilis.},
author = {Harris MA, Reddy CA.},
journal = {J Bacteriol},
year = {1977},
doi = {10.1128/jb.131.3.922-928.1977},
pmid = {893348}
}
@article{lin105364,
title = {[Microbiological characteristics of Lake Turali].},
author = {Aliverdieva-Gamidova LA.},
journal = {Mikrobiologiia},
year = {1977},
pmid = {909476}
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@article{lin105324,
title = {The separation of pyruvate-ferredoxin oxidoreductase from Clostridium pasteurianum into two enzymes catalyzing different reactions.},
author = {Sauer FD, Bush RS, Stevenson IL.},
journal = {Biochim Biophys Acta},
year = {1976},
doi = {10.1016/0005-2744(76)90105-4},
pmid = {953041}
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@article{lin105505,
title = {Regulation of molybdate transport by Clostridium pasteurianum.},
author = {Elliott BB, Mortenson LE.},
journal = {J Bacteriol},
year = {1976},
doi = {10.1128/jb.127.2.770-779.1976},
pmid = {956118}
}
@article{lin105393,
title = {Butyricin 7423: a bacteriocin produced by Clostridium butyricum NCIB7423.},
author = {Clarke DJ, Morris JG.},
journal = {J Gen Microbiol},
year = {1976},
doi = {10.1099/00221287-95-1-67},
pmid = {956780}
}
@article{lin105291,
title = {The use of stable sulfur isotope labelling to elucidate sulfur metabolism by Clostridium pasteurianum.},
author = {McCready RG, Laishley EJ, Krouse HR.},
journal = {Arch Microbiol},
year = {1976},
doi = {10.1007/bf00446644},
pmid = {985000}
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@article{lin105564,
title = {Determination of the iron-sulfur distances in rubredoxin by x-ray absorption spectroscopy.},
author = {Shulman RG, Eisenberger P, Blumberg WE, Stombaugh NA.},
journal = {Proc Natl Acad Sci U S A},
year = {1975},
doi = {10.1073/pnas.72.10.4003},
pmid = {1060082}
}
@article{lin105527,
title = {NH---S hydrogen bonds in Peptococcus aerogenes ferredoxin, Clostridium pasteurianum rubredoxin, and Chromatium high potential iron protein.},
author = {Adman E, Watenpaugh KD, Jensen LH.},
journal = {Proc Natl Acad Sci U S A},
year = {1975},
doi = {10.1073/pnas.72.12.4854},
pmid = {1061073}
}
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title = {Interactions of heterologous nitrogenase components that generate catalytically inactive complexes.},
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title = {Cloning and nucleotide sequence of a frxC-ORF469 gene cluster of Synechocystis PCC6803: conservation with liverwort chloroplast frxC-ORF465 and nif operon.},
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title = {Nucleotide sequence of nifD from Frankia alni strain ArI3: phylogenetic inferences.},
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title = {Two-dimensional NMR investigation of iron-sulfur cluster electronic and molecular structure of oxidized Clostridium pasteurianum ferredoxin. Interpretability of contact shifts in terms of cysteine orientation.},
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title = {Properties of the glucose phosphotransferase system of Clostridium acetobutylicum NCIB 8052.},
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year = {1991},
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title = {Characterization of the Ni-Fe-C complex formed by reaction of carbon monoxide with the carbon monoxide dehydrogenase from Clostridium thermoaceticum by Q-band ENDOR.},
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title = {Primary structure of hydrogenase I from Clostridium pasteurianum.},
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title = {Determinants of protein hyperthermostability: purification and amino acid sequence of rubredoxin from the hyperthermophilic archaebacterium Pyrococcus furiosus and secondary structure of the zinc adduct by NMR.},
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title = {Characterization of the recombinant Clostridium pasteurianum ferredoxin and comparison of its properties with those of the native protein.},
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journal = {Biofactors},
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title = {Electrostatic effects on the spectral and redox properties of Clostridium pasteurianum flavodoxin: effects of salt concentration and polylysine.},
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journal = {Arch Biochem Biophys},
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title = {13C-NMR of Clostridium pasteurianum ferredoxin after reductive methylation of the amines using [13C]formaldehyde.},
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year = {1990},
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title = {Proton n.m.r. of ferredoxin from Clostridium pasteurianum.},
author = {Skjeldal L, Krane J, Ljones T.},
journal = {Int J Biol Macromol},
year = {1989},
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title = {Enzymatic cleavage of Clostridium pasteurianum apoferredoxin and reconstitution of the cleaved products.},
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journal = {Biochim Biophys Acta},
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title = {Electron paramagnetic resonance studies of the low temperature photolytic behavior of oxidized hydrogenase I from Clostridium pasteurianum.},
author = {Kowal AT, Adams MW, Johnson MK.},
journal = {J Biol Chem},
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title = {A novel and remarkably thermostable ferredoxin from the hyperthermophilic archaebacterium Pyrococcus furiosus.},
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journal = {J Bacteriol},
year = {1989},
doi = {10.1128/jb.171.6.3433-3439.1989},
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title = {Iron-sulfur clusters of hydrogenase I and hydrogenase II of Clostridium pasteurianum.},
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journal = {Proc Natl Acad Sci U S A},
year = {1989},
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pmid = {2544883}
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title = {E.p.r.-spectroscopic studies on the molybdenum-iron site of nitrogenase from Clostridium pasteurianum.},
author = {George GN, Bare RE, Jin HY, Stiefel EI, Prince RC.},
journal = {Biochem J},
year = {1989},
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title = {Magnetic circular dichroism and electron paramagnetic resonance studies of hydrogenases I and II from Clostridium pasteurianum.},
author = {Zambrano IC, Kowal AT, Mortenson LE, Adams MW, Johnson MK.},
journal = {J Biol Chem},
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@article{lin105133,
title = {Spectroscopic studies of cobalt-substituted ferredoxin from Clostridium pasteurianum.},
author = {Skjeldal L, Andersson KK, Grace D, Ljones T.},
journal = {Biol Met},
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title = {Transformation of Bacillus polymyxa with plasmid DNA.},
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year = {1989},
doi = {10.1128/aem.55.10.2517-2521.1989},
pmid = {2604393}
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@article{lin105134,
title = {Stabilization, purification, and characterization of glutamate synthase from Clostridium pasteurianum.},
author = {Singhal RK, Krishnan IS, Dua RD.},
journal = {Biochemistry},
year = {1989},
doi = {10.1021/bi00445a056},
pmid = {2611221}
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title = {X-ray-absorption-spectroscopic evidence for a novel iron cluster in hydrogenase II from Clostridium pasteurianum.},
author = {George GN, Prince RC, Stokley KE, Adams MW.},
journal = {Biochem J},
year = {1989},
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title = {Nucleotide and deduced amino acid sequences of nifE from Clostridium pasteurianum.},
author = {Wang SZ, Chen JS, Johnson JL.},
journal = {Nucleic Acids Res},
year = {1989},
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pmid = {2726466}
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title = {Evidence for proton motive force dependent transport of selenite by Clostridium pasteurianum.},
author = {Bryant RD, Laishley EJ.},
journal = {Can J Microbiol},
year = {1989},
doi = {10.1139/m89-074},
pmid = {2743219}
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title = {Isolation, characterization, and biological activity of ferredoxin-NAD+ reductase from the methane oxidizer Methylosinus trichosporium OB3b.},
author = {Chen YP, Yoch DC.},
journal = {J Bacteriol},
year = {1989},
doi = {10.1128/jb.171.9.5012-5016.1989},
pmid = {2768195}
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title = {Purification and characterization of the pyruvate-ferredoxin oxidoreductase from Clostridium acetobutylicum.},
author = {Meinecke B, Bertram J, Gottschalk G.},
journal = {Arch Microbiol},
year = {1989},
doi = {10.1007/bf00409658},
pmid = {2774799}
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title = {Laser flash photolysis studies of the kinetics of reduction of spinach and Clostridium ferredoxins by a viologen analogue: electrostatically controlled nonproductive complex formation and differential reactivity among the iron-sulfur clusters.},
author = {Navarro JA, Cheddar G, Tollin G.},
journal = {Biochemistry},
year = {1989},
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pmid = {2775750}
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title = {The molybdenum-pterin binding protein is encoded by a multigene family in Clostridium pasteurianum.},
author = {Hinton SM, Slaughter C, Eisner W, Fisher T.},
journal = {Gene},
year = {1987},
doi = {10.1016/0378-1119(87)90489-6},
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title = {The roles of osmotic stress and water activity in the inhibition of the growth, glycolysis and glucose phosphotransferase system of Clostridium pasteurianum.},
author = {Walter RP, Morris JG, Kell DB.},
journal = {J Gen Microbiol},
year = {1987},
doi = {10.1099/00221287-133-2-259},
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title = {Flavodoxin-cytochrome c interactions: circular dichroism and nuclear magnetic resonance studies.},
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journal = {Biochemistry},
year = {1987},
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pmid = {2822104}
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title = {The mechanisms of H2 activation and CO binding by hydrogenase I and hydrogenase II of Clostridium pasteurianum.},
author = {Adams MW.},
journal = {J Biol Chem},
year = {1987},
doi = {10.1016/s0021-9258(18)48137-9},
pmid = {2822711}
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title = {The presence of five nifH-like sequences in Clostridium pasteurianum: sequence divergence and transcription properties.},
author = {Wang SZ, Chen JS, Johnson JL.},
journal = {Nucleic Acids Res},
year = {1988},
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pmid = {2829127}
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title = {Isolation and characterization of rubrerythrin, a non-heme iron protein from Desulfovibrio vulgaris that contains rubredoxin centers and a hemerythrin-like binuclear iron cluster.},
author = {LeGall J, Prickril BC, Moura I, Xavier AV, Moura JJ, Huynh BH.},
journal = {Biochemistry},
year = {1988},
doi = {10.1021/bi00405a037},
pmid = {2835096}
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@article{lin105272,
title = {Nucleotide sequence of regions homologous to nifH (nitrogenase Fe protein) from the nitrogen-fixing archaebacteria Methanococcus thermolithotrophicus and Methanobacterium ivanovii: evolutionary implications.},
author = {Souillard N, Magot M, Possot O, Sibold L.},
journal = {J Mol Evol},
year = {1988},
doi = {10.1007/bf02099731},
pmid = {2838639}
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title = {Distinct structural features of the alpha and beta subunits of nitrogenase molybdenum-iron protein of Clostridium pasteurianum: an analysis of amino acid sequences.},
author = {Wang SZ, Chen JS, Johnson JL.},
journal = {Biochemistry},
year = {1988},
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title = {Comparison of redox and EPR properties of the molybdenum iron proteins of Clostridium pasteurianum and Azotobacter vinelandii nitrogenases.},
author = {Morgan TV, Mortenson LE, McDonald JW, Watt GD.},
journal = {J Inorg Biochem},
year = {1988},
doi = {10.1016/0162-0134(88)80039-4},
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title = {Hydrogen-1 nuclear magnetic resonance of the nitrogenase iron protein (Cp2) from Clostridium pasteurianum.},
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journal = {Biochemistry},
year = {1988},
doi = {10.1021/bi00416a048},
pmid = {2847787}
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title = {Clostridium pasteurianum glutamine synthetase mechanism. Evidence for active site tyrosine residues.},
author = {Krishnan IS, Dua RD.},
journal = {FEBS Lett},
year = {1985},
doi = {10.1016/0014-5793(85)80920-0},
pmid = {2860014}
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title = {Protoplast formation and cell wall regeneration in Clostridium perfringens.},
author = {Stal MH, Blaschek HP.},
journal = {Appl Environ Microbiol},
year = {1985},
doi = {10.1128/aem.50.4.1097-1099.1985},
pmid = {2867739}
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title = {Purification and characterization of glutamine synthetase from Clostridium pasteurianum.},
author = {Krishnan IS, Singhal RK, Dua RD.},
journal = {Biochemistry},
year = {1986},
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pmid = {2871863}
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title = {Enzymic synthesis of the 4Fe-4S clusters of Clostridium pasteurianum ferredoxin.},
author = {Bonomi F, Pagani S, Kurtz DM.},
journal = {Eur J Biochem},
year = {1985},
doi = {10.1111/j.1432-1033.1985.tb08808.x},
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title = {Cloning and expression of Clostridium pasteurianum galactokinase gene in Escherichia coli K-12 and nucleotide sequence analysis of a region affecting the amount of the enzyme.},
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title = {On the novel H2-activating iron-sulfur center of the "Fe-only" hydrogenases.},
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title = {Electron-transfer reactions between flavodoxin semiquinone and c-type cytochromes: comparisons between various flavodoxins.},
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journal = {Biochemistry},
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title = {The electronic and magnetic properties of rubredoxin: a low-temperature magnetic circular dichroism study.},
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year = {1987},
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title = {Mössbauer study of Clostridium pasteurianum hydrogenase II. Evidence for a novel three-iron cluster.},
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title = {An investigation of hydrogenase I and hydrogenase II from Clostridium pasteurianum by resonance Raman spectroscopy. Evidence for a [2Fe-2S] cluster in hydrogenase I.},
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title = {Introduction of genes for leucine biosynthesis from Clostridium pasteurianum into C. acetobutylicum by cointegrate conjugal transfer.},
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title = {Restriction endonucleases in Clostridium pasteurianum ATCC 6013 and C. thermohydrosulfuricum DSM 568.},
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title = {Nucleotide and deduced amino acid sequences of nifD encoding the alpha-subunit of nitrogenase MoFe protein of Clostridium pasteurianum.},
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title = {Acetone-butanol fermentation revisited.},
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title = {Cloning, expression and sequencing the molybdenum-pterin binding protein (mop) gene of Clostridium pasteurianum in Escherichia coli.},
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title = {Inactivation of clostridial ferredoxin and pyruvate-ferredoxin oxidoreductase by sodium nitrite.},
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title = {Analysis of the high-spin states of the 2[4Fe-4Se]+ ferredoxin from Clostridium pasteurianum by Mössbauer spectroscopy.},
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title = {Purification and characterization of a molybdenum-pterin-binding protein (Mop) in Clostridium pasteurianum W5.},
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title = {Mechanism of carbamyl phosphate inhibition of nitrogenase of Clostridium pasteurianum.},
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title = {Nucleotide sequence of the gene coding for the nitrogenase iron protein from Klebsiella pneumoniae.},
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title = {Low-temperature magnetic circular dichroism spectra and magnetisation curves of 4Fe clusters in iron-sulphur proteins from Chromatium and Clostridium pasteurianum.},
author = {Johnson MK, Thomson AJ, Robinson AE, Rao KK, Hall DO.},
journal = {Biochim Biophys Acta},
year = {1981},
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title = {Carbohydrate transport in Clostridium pasteurianum.},
author = {Booth IR, Morris JG.},
journal = {Biosci Rep},
year = {1982},
doi = {10.1007/bf01142198},
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@article{lin105249,
title = {Resonance Raman and electron paramagnetic resonance studies on oxidized and ferricyanide-treated Clostridium pasteurianum ferredoxin. Vibrational assignments from 34S shifts and evidence for conversion of 4 to 3 iron-sulfur clusters via oxidative damage. Vibrational assignments from 34S shifts and evidence for conversion of 4 to 3 iron-sulfur clusters via oxidative damage.},
author = {Johnson MK, Spiro TG, Mortenson LE.},
journal = {J Biol Chem},
year = {1982},
doi = {10.1016/s0021-9258(18)34944-5},
pmid = {6277898}
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@article{lin105576,
title = {Paramagnetic centers in the nickel-containing, deazaflavin-reducing hydrogenase from Methanobacterium thermoautotrophicum.},
author = {Kojima N, Fox JA, Hausinger RP, Daniels L, Orme-Johnson WH, Walsh C.},
journal = {Proc Natl Acad Sci U S A},
year = {1983},
doi = {10.1073/pnas.80.2.378},
pmid = {6300837}
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@article{lin105310,
title = {Transient kinetics of redox reactions of flavodoxin: effects of chemical modification of the flavin mononucleotide prosthetic group on the dynamics of intermediate complex formation and electron transfer.},
author = {Simondsen RP, Tollin G.},
journal = {Biochemistry},
year = {1983},
doi = {10.1021/bi00281a034},
pmid = {6307350}
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@article{lin105335,
title = {Hydrogenosomal ferredoxin of the anaerobic protozoon, Tritrichomonas foetus.},
author = {Marczak R, Gorrell TE, Muller M.},
journal = {J Biol Chem},
year = {1983},
doi = {10.1016/s0021-9258(17)44193-7},
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@article{lin105334,
title = {On nitroaryl reductase activities in several Clostridia.},
author = {Angermaier L, Simon H.},
journal = {Hoppe Seylers Z Physiol Chem},
year = {1983},
doi = {10.1515/bchm2.1983.364.2.1653},
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title = {The physical and catalytic properties of hydrogenase II of Clostridium pasteurianum. A comparison with hydrogenase I.},
author = {Adams MW, Mortenson LE.},
journal = {J Biol Chem},
year = {1984},
doi = {10.1016/s0021-9258(17)39835-6},
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title = {Distinct reduction of nitrofurans and metronidazole to free radical metabolites by Tritrichomonas foetus hydrogenosomal and cytosolic enzymes.},
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journal = {J Biol Chem},
year = {1984},
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@article{lin105209,
title = {Purification and properties of the H2-oxidizing (uptake) hydrogenase of the N2-fixing anaerobe Clostridium pasteurianum W5.},
author = {Chen JS, Blanchard DK.},
journal = {Biochem Biophys Res Commun},
year = {1984},
doi = {10.1016/0006-291x(84)90431-5},
pmid = {6331453}
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@article{lin105464,
title = {Purification of hydrogenases by affinity chromatography on Procion Red-agarose.},
author = {Schneider K, Pinkwart M, Jochim K.},
journal = {Biochem J},
year = {1983},
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@article{lin105357,
title = {Interaction of nitrogenase with nucleotide analogs of ATP and ADP and the effect of metal ions on ADP inhibition.},
author = {Weston MF, Kotake S, Davis LC.},
journal = {Arch Biochem Biophys},
year = {1983},
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@article{lin105285,
title = {Influence of pN2 and pD2 on HD formation by various nitrogenases.},
author = {Li JL, Burris RH.},
journal = {Biochemistry},
year = {1983},
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pmid = {6354256}
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@article{lin105538,
title = {Thioredoxin system of the photosynthetic anaerobe Chromatium vinosum.},
author = {Johnson TC, Crawford NA, Buchanan BB.},
journal = {J Bacteriol},
year = {1984},
doi = {10.1128/jb.158.3.1061-1069.1984},
pmid = {6373736}
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@article{lin105275,
title = {Hydrogenase from Acetobacterium woodii.},
author = {Ragsdale SW, Ljungdahl LG.},
journal = {Arch Microbiol},
year = {1984},
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pmid = {6393895}
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@article{lin105298,
title = {Examination of protein sequence homologies: I. Eleven Escherichia coli L7/L12-type ribosomal "A" protein sequences from eubacteria and chloroplast.},
author = {Otaka E, Ooi T, Kumazaki T, Itoh T.},
journal = {J Mol Evol},
year = {1984},
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@article{lin105242,
title = {Butyricin 7423 and the membrane H+ -ATPase of Clostridium pasteurianum.},
author = {Clarke DJ, Kell DB, Morley CD, Morris JG.},
journal = {Arch Microbiol},
year = {1982},
doi = {10.1007/bf00451503},
pmid = {6461308}
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@article{lin105206,
title = {Chromatographic separation of extruded iron-sulfur cores from the apoproteins of Clostridium pasteurianum and spinach ferredoxins in aqueous Triton X-100/urea.},
author = {Bonomi F, Kurtz DM.},
journal = {Anal Biochem},
year = {1984},
doi = {10.1016/0003-2697(84)90543-8},
pmid = {6517316}
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title = {Ferredoxin-linked reduction of metronidazole in Clostridium pasteurianum.},
author = {Lockerby DL, Rabin HR, Bryan LE, Laishley EJ.},
journal = {Antimicrob Agents Chemother},
year = {1984},
doi = {10.1128/aac.26.5.665},
pmid = {6517554}
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@article{lin105196,
title = {The primary structure of the DNA-binding protein II from Clostridium pasteurianum.},
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journal = {FEBS Lett},
year = {1984},
doi = {10.1016/0014-5793(84)80738-3},
pmid = {6541161}
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title = {Formate dehydrogenase of Clostridium pasteurianum.},
author = {Liu CL, Mortenson LE.},
journal = {J Bacteriol},
year = {1984},
doi = {10.1128/jb.159.1.375-380.1984},
pmid = {6547435}
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title = {Structural homologies between the amino acid sequence of Clostridium pasteurianum MoFe protein and the DNA sequences of nifD and K genes of phylogenetically diverse bacteria.},
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journal = {FEBS Lett},
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title = {Resonance Raman spectroscopy of Azotobacter vinelandii ferredoxin I. Vibrational features of the [3Fe-3S] cluster.},
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journal = {FEBS Lett},
year = {1983},
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title = {Structural differences between [2Fe-2S] clusters in spinach ferredoxin and in the "red paramagnetic protein" from Clostridium pasteurianum. A resonance Raman study.},
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journal = {Arch Microbiol},
year = {1984},
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pmid = {6742957}
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title = {Characterization of the selenium-substituted 2 [4Fe-4Se] ferredoxin from Clostridium pasteurianum.},
author = {Moulis JM, Meyer J.},
journal = {Biochemistry},
year = {1982},
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author = {Wiegel J.},
journal = {Arch Microbiol},
year = {1981},
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title = {Regeneration of protoplasts of Clostridium pasteurianum ATCC 6013.},
author = {Minton NP, Morris JG},
journal = {J Bacteriol},
year = {1983},
doi = {10.1128/jb.155.1.432-434.1983},
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journal = {J Gen Microbiol},
year = {1983},
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title = {Occurrence of nickel in carbon monoxide dehydrogenase from Clostridium pasteurianum and Clostridium thermoaceticum.},
author = {Drake HL.},
journal = {J Bacteriol},
year = {1982},
doi = {10.1128/jb.149.2.561-566.1982},
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title = {Molecular symmetry of the MoFe protein of nitrogenase. Structural homology/nitrogen fixation/x-ray crystallography.},
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title = {In vivo energetics and control of nitrogen fixation: changes in the adenylate energy charge and adenosine 5'-diphosphate/adenosine 5'-triphosphate ratio of cells during growth on dinitrogen versus growth on ammonia.},
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year = {1980},
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year = {1980},
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title = {Relative levels of guanosine 5'-diphosphate 3'-diphosphate (ppGpp) in some N2 fixing bacteria during derepression and repression of nitrogenase.},
author = {Kleiner D, Phillips S.},
journal = {Arch Microbiol},
year = {1981},
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title = {Efficiency of ferredoxins and flavodoxins as mediators in systems for hydrogen evolution.},
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year = {1980},
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title = {Correspondence of the larger subunit of the MoFe-protein in clostridial nitrogenase to the nif D gene products of other N2-fixing organisms.},
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journal = {J Biochem},
year = {1981},
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title = {Feedback inhibition of nitrogenase.},
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journal = {J Bacteriol},
year = {1981},
doi = {10.1128/jb.148.3.884-888.1981},
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title = {Origin of the pH dependence of the midpoint reduction potential in Clostridium pasteurianum ferredoxin:oxidation state-dependent hydrogen ion association.},
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title = {Non-heme iron proteins of Desulfovibrio: the primary structure of ferredoxin I from Desulfovibrio africanus.},
author = {Bruschi M, Hatchikian EC.},
journal = {Biochimie},
year = {1982},
doi = {10.1016/s0300-9084(82)80166-1},
pmid = {7126685}
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title = {Some properties of a new electrogenic transport system: the ammonium (methylammonium) carrier from Clostridium pasteurianum.},
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journal = {Biochim Biophys Acta},
year = {1981},
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journal = {Biochemistry},
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pmid = {7295670}
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title = {Stable isotope fractionation by Clostridium pasteurianum. 4. Sulfur isotope fractionation during enzymatic S3O6(2-), S2O3(2-), and SO3(2-) reductions.},
author = {Harrison GI, Laishley EJ, Krouse HR.},
journal = {Can J Microbiol},
year = {1981},
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journal = {Biochim Biophys Acta},
year = {1980},
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pmid = {7356974}
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title = {Clostridial apoferredoxin messenger ribonucleic acid. Assay and partial purification.},
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journal = {Biochim Biophys Acta},
year = {1980},
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title = {Repeated structure and possible gene duplications in high potential iron protein and rubredoxin.},
author = {McLachlan AD.},
journal = {J Mol Evol},
year = {1980},
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pmid = {7411653}
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title = {[Fixation of molecular nitrogen and activity of the microflora in the bottoms of certain lakes in the Estonian SSR and the Rybinsk reservoir].},
author = {Saralov AI, Dziuban AN, Krylova IN.},
journal = {Mikrobiologiia},
year = {1980},
pmid = {7442573}
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title = {Stable isotope fractionation by Clostridium pasteurianum. 3. Effect of SeO32- on the physiology and associated sulfur isotope fractionation during SO32- and SO42- reductions.},
author = {Harrison GI, Laishley EJ, Krouse HR.},
journal = {Can J Microbiol},
year = {1980},
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title = {Solution structure of the oxidized 2[4Fe-4S] ferredoxin from Clostridium pasteurianum.},
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year = {1995},
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title = {Molecular dynamics simulations of rubredoxin from Clostridium pasteurianum: changes in structure and electrostatic potential during redox reactions.},
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journal = {Proteins},
year = {1995},
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pmid = {7567963}
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title = {Characterization of a mutated rubredoxin with a cysteine ligand of the iron replaced by serine.},
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journal = {Biochem Biophys Res Commun},
year = {1995},
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title = {Mutational analysis of genes of the mod locus involved in molybdenum transport, homeostasis, and processing in Azotobacter vinelandii.},
author = {Mouncey NJ, Mitchenall LA, Pau RN.},
journal = {J Bacteriol},
year = {1995},
doi = {10.1128/jb.177.18.5294-5302.1995},
pmid = {7665518}
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@article{lin105171,
title = {Structural analysis and demonstration of the 29 kDa antigen of pathogenic Entamoeba histolytica as the major accessible free thiol-containing surface protein.},
author = {Flores BM, Batzer MA, Stein MA, Petersen C, Diedrich DL, Torian BE.},
journal = {Mol Microbiol},
year = {1993},
doi = {10.1111/j.1365-2958.1993.tb01166.x},
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@article{lin105472,
title = {Characterization of an operon encoding an NADP-reducing hydrogenase in Desulfovibrio fructosovorans.},
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year = {1995},
doi = {10.1128/jb.177.10.2628-2636.1995},
pmid = {7751270}
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@article{lin105104,
title = {Electrospray-ionization mass spectrometry of molecular variants of a [2Fe-2S] ferredoxin.},
author = {Petillot Y, Golinelli MP, Forest E, Meyer J.},
journal = {Biochem Biophys Res Commun},
year = {1995},
doi = {10.1006/bbrc.1995.1714},
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@article{lin105114,
title = {Characteristic features of the heterologous functional synthesis in Escherichia coli of a 2[4Fe-4S] ferredoxin.},
author = {Moulis JM, Davasse V, De Jesus F.},
journal = {Biometals},
year = {1994},
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pmid = {7812112}
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@article{lin104672,
title = {Physical map of the Clostridium beijerinckii (formerly Clostridium acetobutylicum) NCIMB 8052 chromosome.},
author = {Wilkinson SR, Young M.},
journal = {J Bacteriol},
year = {1995},
doi = {10.1128/jb.177.2.439-448.1995},
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@article{lin105175,
title = {Phosphatidylserine decarboxylase 2 of Saccharomyces cerevisiáe. Cloning and mapping of the gene, heterologous expression, and creation of the null allele.},
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journal = {J Biol Chem},
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doi = {10.1074/jbc.270.11.6071},
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title = {Characterization and expression of the hydrogenase-encoding gene from Clostridium acetobutylicum P262.},
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journal = {Microbiology (Reading)},
year = {1995},
doi = {10.1099/00221287-141-1-171},
pmid = {7894709}
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title = {Cloning and expression in Escherichia coli of the gene encoding the [2Fe-2S] ferredoxin from Clostridium pasteurianum.},
author = {Fujinaga J, Meyer J.},
journal = {Biochem Biophys Res Commun},
year = {1993},
doi = {10.1006/bbrc.1993.1532},
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@article{lin104657,
title = {The sequence of the single 16S rRNA gene of the thermophilic eubacterium Rhodothermus marinus reveals a distant relationship to the group containing Flexibacter, Bacteroides, and Cytophaga species.},
author = {Andresson OS, Fridjonsson OH.},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.20.6165-6169.1994},
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title = {Mutated forms of the [2Fe-2S] ferredoxin from Clostridium pasteurianum with noncysteinyl ligands to the iron-sulfur cluster.},
author = {Meyer J, Fujinaga J, Gaillard J, Lutz M.},
journal = {Biochemistry},
year = {1994},
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@article{lin105110,
title = {Characterisation of a complementary DNA encoding a novel plant enzyme with sucrolytic activity.},
author = {Machray GC, Burch L, Hedley PE, Davies HV, Waugh R.},
journal = {FEBS Lett},
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@article{lin105414,
title = {Cloning, DNA sequencing, and characterization of a nifD-homologous gene from the archaeon Methanosarcina barkeri 227 which resembles nifD1 from the eubacterium Clostridium pasteurianum.},
author = {Chien YT, Zinder SH.},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.21.6590-6598.1994},
pmid = {7961410}
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@article{lin105169,
title = {Identification of a nitrogenase protein-protein interaction site defined by residues 59 through 67 within the Azotobacter vinelandii Fe protein.},
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journal = {J Biol Chem},
year = {1994},
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@article{lin105048,
title = {Comparison of native and mutant proteins provides a sequence-specific assignment of the cysteinyl ligand proton NMR resonances in the 2[Fe4S4] ferredoxin from Clostridium pasteurianum.},
author = {Scrofani SD, Brereton PS, Hamer AM, Lavery MJ, McDowall SG, Vincent GA, Brownlee RT, Hoogenraad NJ, Sadek M, Wedd AG.},
journal = {Biochemistry},
year = {1994},
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journal = {DNA Seq},
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journal = {Proteins},
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title = {Analysis, by electrospray ionization mass spectrometry, of several forms of Clostridium pasteurianum rubredoxin.},
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journal = {Biochem J},
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title = {Cloning and sequencing of the gene encoding the [2Fe-2S] ferredoxin from Clostridium pasteurianum.},
author = {Meyer J.},
journal = {Biochim Biophys Acta},
year = {1993},
doi = {10.1016/0167-4781(93)90102-j},
pmid = {8334159}
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title = {Organization of potential alternative nitrogenase genes from Clostridium pasteurianum.},
author = {Zinoni F, Robson RM, Robson RL},
journal = {Biochim Biophys Acta},
year = {1993},
doi = {10.1016/0167-4781(93)90096-v},
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@article{lin105246,
title = {13C-n.m.r. of the cyanylated apoflavodoxin and flavodoxin from Clostridium pasteurianum.},
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journal = {Biochem J},
year = {1993},
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@article{lin105165,
title = {Characterization of genes involved in molybdenum transport in Azotobacter vinelandii.},
author = {Luque F, Mitchenall LA, Chapman M, Christine R, Pau RN.},
journal = {Mol Microbiol},
year = {1993},
doi = {10.1111/j.1365-2958.1993.tb01136.x},
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title = {Using dysprosium complexes to probe the nitrogenase paramagnetic centers.},
author = {Oliver ME, Hales BJ.},
journal = {Biochemistry},
year = {1993},
doi = {10.1021/bi00074a017},
pmid = {8389587}
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title = {Mutated forms of a [2Fe-2S] ferredoxin with serine ligands to the iron-sulfur cluster.},
author = {Fujinaga J, Gaillard J, Meyer J.},
journal = {Biochem Biophys Res Commun},
year = {1993},
doi = {10.1006/bbrc.1993.1791},
pmid = {8392833}
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title = {X-ray crystal structure of the nitrogenase molybdenum-iron protein from Clostridium pasteurianum at 3.0-A resolution.},
author = {Kim J, Woo D, Rees DC.},
journal = {Biochemistry},
year = {1993},
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title = {Selective interaction of ferricyanide with cluster I of Clostridium pasteurianum 2[Fe4S4] ferredoxin.},
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journal = {FEBS Lett},
year = {1993},
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title = {Transcript mapping of the rubredoxin gene from Clostridium pasteurianum.},
author = {Mathieu I, Meyer J.},
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year = {1993},
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title = {The unusual metal clusters of nitrogenase: structural features revealed by x-ray anomalous diffraction studies of the MoFe protein from Clostridium pasteurianum.},
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journal = {Proc Natl Acad Sci U S A},
year = {1993},
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title = {A novel parameterization scheme for energy equations and its use to calculate the structure of protein molecules.},
author = {Snow ME.},
journal = {Proteins},
year = {1993},
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title = {Anaerobic transformation of 2,4,6-trinitrotoluene (TNT).},
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year = {1993},
doi = {10.1021/bi00069a016},
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title = {Characterization of Rhodobacter capsulatus genes encoding a molybdenum transport system and putative molybdenum-pterin-binding proteins.},
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journal = {J Bacteriol},
year = {1993},
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journal = {Protein Sci},
year = {1993},
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journal = {Biochemistry},
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title = {Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227.},
author = {Chien YT, Zinder SH.},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.1.143-148.1996},
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title = {Molecular analysis of the molybdate uptake operon, modABCD, of Escherichia coli and modR, a regulatory gene.},
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title = {Molecular mechanism of pyruvate-ferredoxin oxidoreductases based on data obtained with the Clostridium pasteurianum enzyme.},
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year = {1996},
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title = {Molecular characterization of the genes encoding pyruvate formate-lyase and its activating enzyme of Clostridium pasteurianum.},
author = {Weidner G, Sawers G.},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.8.2440-2444.1996},
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@article{lin105287,
title = {Purification and characterization of 2-oxoglutarate:ferredoxin oxidoreductase from a thermophilic, obligately chemolithoautotrophic bacterium, Hydrogenobacter thermophilus TK-6.},
author = {Yoon KS, Ishii M, Igarashi Y, Kodama T.},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.11.3365-3368.1996},
pmid = {8655524}
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@article{lin105148,
title = {Evidence for electron transfer from the nitrogenase iron protein to the molybdenum-iron protein without MgATP hydrolysis: characterization of a tight protein-protein complex.},
author = {Lanzilotta WN, Fisher K, Seefeldt LC.},
journal = {Biochemistry},
year = {1996},
doi = {10.1021/bi9603985},
pmid = {8679547}
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@article{lin105037,
title = {Cysteine ligand swapping on a deletable loop of the [2Fe-2S] ferredoxin from Clostridium pasteurianum.},
author = {Golinelli MP, Akin LA, Crouse BR, Johnson MK, Meyer J.},
journal = {Biochemistry},
year = {1996},
doi = {10.1021/bi9604284},
pmid = {8688437}
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title = {The influence of conserved aromatic residues on the electron transfer reactivity of 2[4Fe-4S] ferredoxins.},
author = {Quinkal I, Kyritsis P, Kohzuma T, Im SC, Sykes AG, Moulis JM.},
journal = {Biochim Biophys Acta},
year = {1996},
doi = {10.1016/0167-4838(96)00042-8},
pmid = {8695647}
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title = {Zinc- and iron-rubredoxins from Clostridium pasteurianum at atomic resolution: a high-precision model of a ZnS4 coordination unit in a protein.},
author = {Dauter Z, Wilson KS, Sieker LC, Moulis JM, Meyer J.},
journal = {Proc Natl Acad Sci U S A},
year = {1996},
doi = {10.1073/pnas.93.17.8836},
pmid = {8799113}
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title = {Coordination of the [2Fe-2S] cluster in wild type and molecular variants of Clostridium pasteurianum ferredoxin, investigated by ESEEM spectroscopy.},
author = {Shergill JK, Golinelli MP, Cammack R, Meyer J.},
journal = {Biochemistry},
year = {1996},
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pmid = {8841127}
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title = {Phylogenetic analysis of the bacterial communities in marine sediments.},
author = {Gray JP, Herwig RP.},
journal = {Appl Environ Microbiol},
year = {1996},
doi = {10.1128/aem.62.11.4049-4059.1996},
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@article{lin105086,
title = {Temperature dependence of the redox potential of rubredoxin from Pyrococcus furiosus: a molecular dynamics study.},
author = {Swartz PD, Ichiye T.},
journal = {Biochemistry},
year = {1996},
doi = {10.1021/bi960611x},
pmid = {8901519}
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@article{lin105018,
title = {Synthetic mutants of Clostridium pasteurianum ferredoxin: open iron sites and testing carboxylate coordination.},
author = {Feinberg BA, Lo X, Iwamoto T, Tomich JM.},
journal = {Protein Eng},
year = {1997},
doi = {10.1093/protein/10.1.69},
pmid = {9051736}
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@article{lin105096,
title = {The heterocyst-specific fdxH gene product of the cyanobacterium Anabaena sp. PCC 7120 is important but not essential for nitrogen fixation.},
author = {Masepohl B, Scholisch K, Gorlitz K, Kutzki C, Bohme H.},
journal = {Mol Gen Genet},
year = {1997},
doi = {10.1007/s004380050383},
pmid = {9079890}
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@article{lin105077,
title = {Purification and characterization of pyruvate:ferredoxin oxidoreductase from Hydrogenobacter thermophilus TK-6.},
author = {Yoon KS, Ishii M, Kodama T, Igarashi Y.},
journal = {Arch Microbiol},
year = {1997},
doi = {10.1007/s002030050443},
pmid = {9094223}
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@article{lin105574,
title = {Protein engineering reveals ancient adaptive replacements in isocitrate dehydrogenase.},
author = {Dean AM, Golding GB.},
journal = {Proc Natl Acad Sci U S A},
year = {1997},
doi = {10.1073/pnas.94.7.3104},
pmid = {9096353}
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@article{lin105092,
title = {Intramolecular electron transfer between [4Fe-4S] clusters studied by proton magnetic resonance spectroscopy.},
author = {Kyritsis P, Huber JG, Quinkal I, Gaillard J, Moulis JM.},
journal = {Biochemistry},
year = {1997},
doi = {10.1021/bi970020m},
pmid = {9201927}
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@article{lin104623,
title = {Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients.},
author = {Heuer H, Krsek M, Baker P, Smalla K, Wellington EM.},
journal = {Appl Environ Microbiol},
year = {1997},
doi = {10.1128/aem.63.8.3233-3241.1997},
pmid = {9251210}
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@article{lin105095,
title = {Dissecting contributions to the thermostability of Pyrococcus furiosus rubredoxin: beta-sheet chimeras.},
author = {Eidsness MK, Richie KA, Burden AE, Kurtz DM, Scott RA.},
journal = {Biochemistry},
year = {1997},
doi = {10.1021/bi970110r},
pmid = {9265620}
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@article{lin105002,
title = {Specific interaction of the [2Fe-2S] ferredoxin from Clostridium pasteurianum with the nitrogenase MoFe protein.},
author = {Golinelli MP, Gagnon J, Meyer J.},
journal = {Biochemistry},
year = {1997},
doi = {10.1021/bi970528p},
pmid = {9305970}
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@article{lin104986,
title = {Glycerol conversion to 1,3-propanediol by Clostridium pasteurianum: cloning and expression of the gene encoding 1,3-propanediol dehydrogenase.},
author = {Luers F, Seyfried M, Daniel R, Gottschalk G.},
journal = {FEMS Microbiol Lett},
year = {1997},
doi = {10.1111/j.1574-6968.1997.tb12665.x},
pmid = {9311132}
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@article{lin105058,
title = {The iron-sulfur centers of the pyruvate:ferredoxin oxidoreductase from Methanosarcina barkeri (Fusaro).},
author = {Bock AK, Schonheit P, Teixeira M.},
journal = {FEBS Lett},
year = {1997},
doi = {10.1016/s0014-5793(97)00998-8},
pmid = {9315687}
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title = {Assembly of a [2Fe-2S]2+ cluster in a molecular variant of Clostridium pasteurianum rubredoxin.},
author = {Meyer J, Gagnon J, Gaillard J, Lutz M, Achim C, Munck E, Petillot Y, Colangelo CM, Scott RA.},
journal = {Biochemistry},
year = {1997},
doi = {10.1021/bi971775w},
pmid = {9341230}
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@article{lin104980,
title = {Paramagnetic relaxation as a tool for solution structure determination: Clostridium pasteurianum ferredoxin as an example.},
author = {Bertini I, Donaire A, Luchinat C, Rosato A.},
journal = {Proteins},
year = {1997},
doi = {10.1002/(sici)1097-0134(199711)29:3<348::aid-prot8>3.0.co;2-6},
pmid = {9365989}
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title = {Protein contributions to redox potentials of homologous rubredoxins: an energy minimization study.},
author = {Swartz PD, Ichiye T.},
journal = {Biophys J},
year = {1997},
doi = {10.1016/s0006-3495(97)78302-4},
pmid = {9370467}
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@article{lin105084,
title = {Purification and characterization of the HndA subunit of NADP-reducing hydrogenase from Desulfovibrio fructosovorans overproduced in Escherichia coli.},
author = {De Luca G, Asso M, Belaich JP, Dermoun Z.},
journal = {Biochemistry},
year = {1998},
doi = {10.1021/bi972474p},
pmid = {9485416}
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@article{lin105076,
title = {Kinetic role of electrostatic interactions in the unfolding of hyperthermophilic and mesophilic rubredoxins.},
author = {Cavagnero S, Debe DA, Zhou ZH, Adams MW, Adams MW, Chan SI.},
journal = {Biochemistry},
year = {1998},
doi = {10.1021/bi9721795},
pmid = {9521657}
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@article{lin105082,
title = {Unfolding mechanism of rubredoxin from Pyrococcus furiosus.},
author = {Cavagnero S, Zhou ZH, Adams MW, Adams MW, Chan SI.},
journal = {Biochemistry},
year = {1998},
doi = {10.1021/bi9721804},
pmid = {9521658}
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@article{lin105050,
title = {Hydrogen evolution by direct electron transfer from photosystem I to hydrogenases.},
author = {McTavish H.},
journal = {J Biochem},
year = {1998},
doi = {10.1093/oxfordjournals.jbchem.a021986},
pmid = {9538256}
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@article{lin104953,
title = {Two-dimensional gel electrophoresis separation and N-terminal sequence analysis of proteins from Clostridium pasteurianum W5.},
author = {Flengsrud R, Skjeldal L.},
journal = {Electrophoresis},
year = {1998},
doi = {10.1002/elps.1150190533},
pmid = {9629918}
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@article{lin105089,
title = {The eight-amino acid internal loop of PSI-C mediates association of low molecular mass iron-sulfur proteins with the P700-FX core in photosystem I.},
author = {Naver H, Scott MP, Golbeck JH, Olsen CE, Scheller HV.},
journal = {J Biol Chem},
year = {1998},
doi = {10.1074/jbc.273.30.18778},
pmid = {9668051}
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@article{lin104994,
title = {Extensive ligand rearrangements around the [2Fe-2S] cluster of Clostridium pasteurianum ferredoxin.},
author = {Golinelli MP, Chatelet C, Duin EC, Johnson MK, Meyer J.},
journal = {Biochemistry},
year = {1998},
doi = {10.1021/bi9806394},
pmid = {9671512}
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@article{lin104966,
title = {Properties and sequence of the coenzyme B12-dependent glycerol dehydratase of Clostridium pasteurianum.},
author = {Macis L, Daniel R, Gottschalk G.},
journal = {FEMS Microbiol Lett},
year = {1998},
doi = {10.1111/j.1574-6968.1998.tb13062.x},
pmid = {9675846}
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@article{lin104999,
title = {Conformational variability in structures of the nitrogenase iron proteins from Azotobacter vinelandii and Clostridium pasteurianum.},
author = {Schlessman JL, Woo D, Joshua-Tor L, Howard JB, Rees DC.},
journal = {J Mol Biol},
year = {1998},
doi = {10.1006/jmbi.1998.1898},
pmid = {9677296}
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@article{lin105477,
title = {Genetic diversity of nifH gene sequences in paenibacillus azotofixans strains and soil samples analyzed by denaturing gradient gel electrophoresis of PCR-amplified gene fragments.},
author = {Rosado AS, Duarte GF, Seldin L, Van Elsas JD.},
journal = {Appl Environ Microbiol},
year = {1998},
doi = {10.1128/aem.64.8.2770-2779.1998},
pmid = {9687429}
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@article{lin104976,
title = {Molecular dynamics simulation of interaction of histone-like protein of mycobacterium tuberculosis (Hlpmt) and histone of clostridium pasteurianum (DBHclopa) with 35 based paired GC rich U-bend DNA.},
author = {Kothekar V, Raha K, Prasad HK.},
journal = {J Biomol Struct Dyn},
year = {1998},
doi = {10.1080/07391102.1998.10508241},
pmid = {9833662}
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@article{lin104973,
title = {X-ray crystal structure of the Fe-only hydrogenase (CpI) from Clostridium pasteurianum to 1.8 angstrom resolution.},
author = {Peters JW, Lanzilotta WN, Lemon BJ, Seefeldt LC.},
journal = {Science},
year = {1998},
doi = {10.1126/science.282.5395.1853},
pmid = {9836629}
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@article{lin104991,
title = {Heterologous biosynthesis and characterization of the [2Fe-2S]-containing N-terminal domain of Clostridium pasteurianum hydrogenase.},
author = {Atta M, Lafferty ME, Johnson MK, Gaillard J, Meyer J.},
journal = {Biochemistry},
year = {1998},
doi = {10.1021/bi9812928},
pmid = {9843404}
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@article{lin370120,
title = {Hydrolysis of pork muscle sarcoplasmic proteins by lactobacillus curvatus and lactobacillus sake.},
author = {Fadda S, Sanz Y, Vignolo G, Aristoy M, Oliver G, Toldra F.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.2.578-584.1999},
pmid = {9925585}
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@article{lin104984,
title = {Investigation of the role of surface residues in the ferredoxin from Clostridium pasteurianum.},
author = {Brereton PS, Maher MJ, Tregloan PA, Wedd AG.},
journal = {Biochim Biophys Acta},
year = {1999},
doi = {10.1016/s0167-4838(98)00197-6},
pmid = {9989216}
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@article{lin104983,
title = {Structural similarities between the N-terminal domain of Clostridium pasteurianum hydrogenase and plant-type ferredoxins.},
author = {Kummerle R, Atta M, Scuiller J, Gaillard J, Meyer J.},
journal = {Biochemistry},
year = {1999},
doi = {10.1021/bi982416j},
pmid = {10026275}
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@article{lin105341,
title = {Interactions between nitrogen fixation and osmoregulation in the methanogenic archaeon methanosarcina barkeri 227 },
author = {Brabban AD, Orcutt EN, Zinder SH.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.3.1222-1227.1999},
pmid = {10049887}
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@article{lin104987,
title = {Rubredoxin from Clostridium pasteurianum. Structures of G10A, G43A and G10VG43A mutant proteins. Mutation of conserved glycine 10 to valine causes the 9-10 peptide link to invert.},
author = {Maher MJ, Xiao Z, Wilce MC, Guss JM, Wedd AG.},
journal = {Acta Crystallogr D Biol Crystallogr},
year = {1999},
doi = {10.1107/s0907444999001900},
pmid = {10216292}
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@article{lin105569,
title = {Reduction of technetium by Desulfovibrio desulfuricans: biocatalyst characterization and use in a flowthrough bioreactor.},
author = {Lloyd JR, Ridley J, Khizniak T, Lyalikova NN, Macaskie LE.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.6.2691-2696.1999},
pmid = {10347062}
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@article{lin104968,
title = {Evidence that MgATP accelerates primary electron transfer in a Clostridium pasteurianum Fe protein-Azotobacter vinelandii MoFe protein nitrogenase tight complex.},
author = {Chan JM, Ryle MJ, Seefeldt LC.},
journal = {J Biol Chem},
year = {1999},
doi = {10.1074/jbc.274.25.17593},
pmid = {10364195}
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@article{lin105062,
title = {Redox properties of mesophilic and hyperthermophilic rubredoxins as a function of pressure and temperature.},
author = {Gilles de Pelichy LD, Smith ET.},
journal = {Biochemistry},
year = {1999},
doi = {10.1021/bi990322j},
pmid = {10387028}
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title = {Transcriptional analysis of the tutE tutFDGH gene cluster from Thauera aromatica strain T1.},
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journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.3.1147-1151.2000},
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title = {An effective lacticin biopreservative in fresh pork sausage.},
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title = {Variation of molecular alignment as a means of resolving orientational ambiguities in protein structures from dipolar couplings.},
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@article{lin105059,
title = {Clostridium akagii sp. nov. and Clostridium acidisoli sp. nov.: acid-tolerant, N2-fixing clostridia isolated from acidic forest soil and litter.},
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year = {2000},
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title = {Mutation of the surface valine residues 8 and 44 in the rubredoxin from Clostridium pasteurianum: solvent access versus structural changes as determinants of reversible potential.},
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title = {Thermostabilization of proteins by diglycerol phosphate, a new compatible solute from the hyperthermophile Archaeoglobus fulgidus.},
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year = {2000},
doi = {10.1128/aem.66.5.1974-1979.2000},
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title = {A scanning tunnelling microscopy study of Clostridium pasteurianum rubredoxin.},
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journal = {J Inorg Biochem},
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@article{lin105297,
title = {Analysis of genes encoding an alternative nitrogenase in the archaeon Methanosarcina barkeri 227.},
author = {Chien YT, Auerbuch V, Brabban AD, Zinder SH.},
journal = {J Bacteriol},
year = {2000},
doi = {10.1128/jb.182.11.3247-3253.2000},
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title = {Electron transfer properties of iron-sulfur proteins.},
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journal = {J Inorg Biochem},
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pmid = {10830851}
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@article{lin105024,
title = {Reversible carbon monoxide binding and inhibition at the active site of the Fe-only hydrogenase.},
author = {Bennett B, Lemon BJ, Peters JW.},
journal = {Biochemistry},
year = {2000},
doi = {10.1021/bi992583z},
pmid = {10858294}
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@article{lin105532,
title = {Characterization of the Streptococcus mutans pyruvate formate-lyase (PFL)-activating enzyme gene by complementary reconstitution of the In vitro PFL-reactivating system.},
author = {Yamamoto Y, Sato Y, Takahashi-Abbe S, Takahashi N, Kizaki H.},
journal = {Infect Immun},
year = {2000},
doi = {10.1128/iai.68.8.4773-4777.2000},
pmid = {10899886}
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@article{lin105003,
title = {Purification and characterization of the 1-3-propanediol dehydrogenase of Clostridium butyricum E5.},
author = {Malaoui H, Marczak R.},
journal = {Enzyme Microb Technol},
year = {2000},
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pmid = {10938419}
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title = {Investigations of the oxidative disassembly of Fe-S clusters in Clostridium pasteurianum 8Fe ferredoxin using pulsed-protein-film voltammetry.},
author = {Camba R, Armstrong FA.},
journal = {Biochemistry},
year = {2000},
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pmid = {10956051}
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title = {Mössbauer, EPR, and MCD studies of the C9S and C42S variants of Clostridium pasteurianum rubredoxin and MDC studies of the wild-type protein.},
author = {Yoo SJ, Meyer J, Achim C, Peterson J, Hendrich MP, Munck E.},
journal = {J Biol Inorg Chem},
year = {2000},
doi = {10.1007/s007750050008},
pmid = {10968619}
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title = {Formation of a tight 1:1 complex of Clostridium pasteurianum Fe protein-Azotobacter vinelandii MoFe protein: evidence for long-range interactions between the Fe protein binding sites during catalytic hydrogen evolution.},
author = {Clarke TA, Maritano S, Eady RR.},
journal = {Biochemistry},
year = {2000},
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pmid = {10985789}
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@article{lin105019,
title = {The presence of a SO molecule in [NiFe] hydrogenase from Desulfovibrio vulgaris Miyazaki as detected by mass spectrometry.},
author = {Higuchi Y, Toujou F, Tsukamoto K, Yagi T.},
journal = {J Inorg Biochem},
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title = {Analysis of steady state Fe and MoFe protein interactions during nitrogenase catalysis.},
author = {Johnson JL, Nyborg AC, Wilson PE, Tolley AM, Nordmeyer FR, Watt GD.},
journal = {Biochim Biophys Acta},
year = {2000},
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title = {Mechanistic interpretation of the dilution effect for Azotobacter vinelandii and Clostridium pasteurianum nitrogenase catalysis.},
author = {Johnson JL, Nyborg AC, Wilson PE, Tolley AM, Nordmeyer FR, Watt GD.},
journal = {Biochim Biophys Acta},
year = {2000},
doi = {10.1016/s0167-4838(00)00196-5},
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title = {Potential symbiosis-specific genes uncovered by sequencing a 410-kilobase DNA region of the Bradyrhizobium japonicum chromosome.},
author = {Gottfert M, Rothlisberger S, Kundig C, Beck C, Marty R, Hennecke H.},
journal = {J Bacteriol},
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doi = {10.1128/jb.183.4.1405-1412.2001},
pmid = {11157954}
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title = {Thermal stability of Clostridium pasteurianum rubredoxin: deconvoluting the contributions of the metal site and the protein.},
author = {Bonomi F, Fessas D, Iametti S, Kurtz DM, Mazzini S.},
journal = {Protein Sci},
year = {2000},
doi = {10.1110/ps.9.12.2413},
pmid = {11206063}
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title = {Hydrogen peroxide-forming NADH oxidase belonging to the peroxiredoxin oxidoreductase family: existence and physiological role in bacteria.},
author = {Nishiyama Y, Massey V, Takeda K, Kawasaki S, Sato J, Watanabe T, Niimura Y.},
journal = {J Bacteriol},
year = {2001},
doi = {10.1128/jb.183.8.2431-2438.2001},
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title = {Analysis of metal incorporation during overexpression of Clostridium pasteurianum rubredoxin by electrospray FTICR mass spectrometry.},
author = {Taylor PK, Parks BA, Kurtz DM, Amster IJ.},
journal = {J Biol Inorg Chem},
year = {2001},
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@article{lin105016,
title = {Identification and expression of the genes and purification and characterization of the gene products involved in reactivation of coenzyme B12-dependent glycerol dehydratase of Citrobacter freundii.},
author = {Seifert C, Bowien S, Gottschalk G, Daniel R.},
journal = {Eur J Biochem},
year = {2001},
doi = {10.1046/j.1432-1327.2001.02123.x},
pmid = {11298756}
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title = {Leucine 41 is a gate for water entry in the reduction of Clostridium pasteurianum rubredoxin.},
author = {Min T, Ergenekan CE, Eidsness MK, Ichiye T, Kang C.},
journal = {Protein Sci},
year = {2001},
doi = {10.1110/gad.34501},
pmid = {11344329}
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@article{lin105407,
title = {Trifluoromethionine, a prodrug designed against methionine gamma-lyase-containing pathogens, has efficacy in vitro and in vivo against Trichomonas vaginalis.},
author = {Coombs GH, Mottram JC.},
journal = {Antimicrob Agents Chemother},
year = {2001},
doi = {10.1128/aac.45.6.1743-1745.2001},
pmid = {11353620}
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@article{lin104942,
title = {Structural basis for thermostability in aporubredoxins from Pyrococcus furiosus and Clostridium pasteurianum.},
author = {Zartler ER, Jenney FE, Terrell M, Eidsness MK, Adams MW, Prestegard JH.},
journal = {Biochemistry},
year = {2001},
doi = {10.1021/bi0026831},
pmid = {11401576}
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@article{lin105006,
title = {Primers and a specific DNA probe for detecting lactic acid bacteria producing 3-hydroxypropionaldehyde from glycerol in spoiled ciders.},
author = {Claisse O, Lonvaud-Funel A.},
journal = {J Food Prot},
year = {2001},
doi = {10.4315/0362-028x-64.6.833},
pmid = {11403134}
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@article{lin104924,
title = {Oxygen disruption of the 2[4Fe-4S] clusters in Clostridium pasteurianum ferredoxin shown by 1H-NMR.},
author = {Harklau H, Ljones T, Skjeldal L.},
journal = {J Inorg Biochem},
year = {2001},
doi = {10.1016/s0162-0134(01)00197-0},
pmid = {11410231}
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title = {Photosynthetic and phylogenetic primers for detection of anoxygenic phototrophs in natural environments.},
author = {Achenbach LA, Carey J, Madigan MT.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.7.2922-2926.2001},
pmid = {11425703}
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@article{lin105026,
title = {Long-range interactions between the Fe protein binding sites of the MoFe protein of nitrogenase.},
author = {Maritano S, Fairhurst SA, Eady RR.},
journal = {J Biol Inorg Chem},
year = {2001},
doi = {10.1007/s007750100235},
pmid = {11472022}
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@article{lin104969,
title = {Novel EPR signals associated with FeMoco centres of MoFe protein in MgADP-inhibited turnover of nitrogenase.},
author = {Maritano S, Fairhurst SA, Eady RR.},
journal = {FEBS Lett},
year = {2001},
doi = {10.1016/s0014-5793(01)02800-9},
pmid = {11557054}
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title = {Mapping the interaction of the [2Fe-2S] Clostridium pasteurianum ferredoxin with nitrogenase MoFe protein.},
author = {Chatelet C, Meyer J.},
journal = {Biochim Biophys Acta},
year = {2001},
doi = {10.1016/s0167-4838(01)00246-1},
pmid = {11566366}
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title = {Effect of selenite on growth and protein synthesis in the phototrophic bacterium Rhodobacter sphaeroides.},
author = {Bebien M, Chauvin JP, Adriano JM, Grosse S, Vermeglio A.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.10.4440-4447.2001},
pmid = {11571140}
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@article{lin105515,
title = {Reduction of technetium(VII) by Desulfovibrio fructosovorans is mediated by the nickel-iron hydrogenase.},
author = {De Luca G, de Philip P, Dermoun Z, Rousset M, Vermeglio A.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.10.4583-4587.2001},
pmid = {11571159}
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@article{lin105577,
title = {Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots.},
author = {Kusel K, Karnholz A, Trinkwalter T, Devereux R, Acker G, Drake HL.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.10.4734-4741.2001},
pmid = {11571179}
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@article{lin104619,
title = {Bulk and rhizosphere soil bacterial communities studied by denaturing gradient gel electrophoresis: plant-dependent enrichment and seasonal shifts revealed.},
author = {Smalla K, Wieland G, Buchner A, Zock A, Parzy J, Kaiser S, Roskot N, Heuer H, Berg G.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.10.4742-4751.2001},
pmid = {11571180}
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title = {Fermentation of glycerol by Clostridium pasteurianum--batch and continuous culture studies.},
author = {Biebl H.},
journal = {J Ind Microbiol Biotechnol},
year = {2001},
doi = {10.1038/sj.jim.7000155},
pmid = {11598806}
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title = {Electron Paramagnetic Resonance Spectroscopy of the Iron-Molybdenum Cofactor of Clostridium pasteurianum Nitrogenase.},
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journal = {Inorg Chem},
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@article{lin104906,
title = {Crystallization and X-ray diffraction measurements on recombinant molbindin, MopII, from Clostridium pasteurianum.},
author = {Harrison JA, Schuttelkopf AW, Boxer DH, Hunter WN.},
journal = {Acta Crystallogr D Biol Crystallogr},
year = {2001},
doi = {10.1107/s0907444901013798},
pmid = {11679755}
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@article{lin104977,
title = {Reduced temperature dependence of collective conformational opening in a hyperthermophile rubredoxin.},
author = {Hernandez G, LeMaster DM.},
journal = {Biochemistry},
year = {2001},
doi = {10.1021/bi0112560},
pmid = {11724550}
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@article{lin105511,
title = {Improvement of cellulolytic properties of Clostridium cellulolyticum by metabolic engineering.},
author = {Guedon E, Desvaux M, Petitdemange H.},
journal = {Appl Environ Microbiol},
year = {2002},
doi = {10.1128/aem.68.1.53-58.2002},
pmid = {11772608}
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@article{lin105001,
title = {Nitrogen-fixation genes and nitrogenase activity in Clostridium acetobutylicum and Clostridium beijerinckii.},
author = {Chen JS, Toth J, Kasap M.},
journal = {J Ind Microbiol Biotechnol},
year = {2001},
doi = {10.1038/sj.jim.7000083},
pmid = {11781802}
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@article{lin104934,
title = {An NADH-dependent bacterial thioredoxin reductase-like protein in conjunction with a glutaredoxin homologue form a unique peroxiredoxin (AhpC) reducing system in Clostridium pasteurianum.},
author = {Reynolds CM, Meyer J, Poole LB.},
journal = {Biochemistry},
year = {2002},
doi = {10.1021/bi011802p},
pmid = {11827546}
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@article{lin104925,
title = {Infrared studies of the CO-inhibited form of the Fe-only hydrogenase from Clostridium pasteurianum I: examination of its light sensitivity at cryogenic temperatures.},
author = {Chen Z, Lemon BJ, Huang S, Swartz DJ, Peters JW, Bagley KA.},
journal = {Biochemistry},
year = {2002},
doi = {10.1021/bi011510o},
pmid = {11827551}
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@article{lin104926,
title = {Molecular dynamics study of a hyperthermophilic and a mesophilic rubredoxin.},
author = {Grottesi A, Ceruso MA, Colosimo A, Di Nola A.},
journal = {Proteins},
year = {2002},
doi = {10.1002/prot.10045},
pmid = {11835504}
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@article{lin104915,
title = {Passive acquisition of ligand by the MopII molbindin from Clostridium pasteurianum: structures of apo and oxyanion-bound forms.},
author = {Schuttelkopf AW, Harrison JA, Boxer DH, Hunter WN.},
journal = {J Biol Chem},
year = {2002},
doi = {10.1074/jbc.m201005200},
pmid = {11836258}
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@article{lin104624,
title = {Effects of T4 lysozyme release from transgenic potato roots on bacterial rhizosphere communities are negligible relative to natural factors.},
author = {Heuer H, Kroppenstedt RM, Lottmann J, Berg G, Smalla K.},
journal = {Appl Environ Microbiol},
year = {2002},
doi = {10.1128/aem.68.3.1325-1335.2002},
pmid = {11872484}
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@article{lin104943,
title = {Thermal stability of the [Fe(SCys)(4)] site in Clostridium pasteurianum rubredoxin: contributions of the local environment and Cys ligand protonation.},
author = {Bonomi F, Burden AE, Eidsness MK, Fessas D, Iametti S, Kurtz DM, Mazzini S, Scott RA, Zeng Q.},
journal = {J Biol Inorg Chem},
year = {2002},
doi = {10.1007/s00775-001-0314-2},
pmid = {11941500}
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@article{lin104933,
title = {O2 penetration and proton burial depth in proteins: applicability to fold family recognition.},
author = {Hernandez G, Teng CL, Bryant RG, LeMaster DM.},
journal = {J Am Chem Soc},
year = {2002},
doi = {10.1021/ja017340k},
pmid = {11960476}
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@article{lin105467,
title = {Direct detection of potential selenium delivery proteins by using an Escherichia coli strain unable to incorporate selenium from selenite into proteins.},
author = {Lacourciere GM, Levine RL, Stadtman TC.},
journal = {Proc Natl Acad Sci U S A},
year = {2002},
doi = {10.1073/pnas.142291199},
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title = {Removal of a cysteine ligand from rubredoxin: assembly of Fe(2)S(2) and Fe(S-Cys)(3)(OH) centres.},
author = {Cross M, Xiao Z, Maes EM, Czernuszewicz RS, Drew SC, Pilbrow JR, George GN, Wedd AG.},
journal = {J Biol Inorg Chem},
year = {2002},
doi = {10.1007/s00775-002-0355-1},
pmid = {12203014}
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@article{lin105321,
title = {Zinc-substituted Desulfovibrio gigas desulforedoxins: resolving subunit degeneracy with nonsymmetric pseudocontact shifts.},
author = {Goodfellow BJ, Nunes SG, Rusnak F, Moura I, Ascenso C, Moura JJ, Volkman BF, Markley JL.},
journal = {Protein Sci},
year = {2002},
doi = {10.1110/ps.0208802},
pmid = {12237467}
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@article{lin370121,
title = {Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces.},
author = {Matsuki T, Watanabe K, Fujimoto J, Miyamoto Y, Takada T, Matsumoto K, Oyaizu H, Tanaka R.},
journal = {Appl Environ Microbiol},
year = {2002},
doi = {10.1128/aem.68.11.5445-5451.2002},
pmid = {12406736}
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@article{lin104993,
title = {Mössbauer study of reduced rubredoxin as purified and in whole cells. Structural correlation analysis of spin Hamiltonian parameters.},
author = {Vrajmasu VV, Bominaar EL, Meyer J, Munck E.},
journal = {Inorg Chem},
year = {2002},
doi = {10.1021/ic020508y},
pmid = {12444779}
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@article{lin104938,
title = {Redox properties of rubredoxin variants as a function of solvent composition and temperature: investigation of monopolar and dipolar interactions.},
author = {Zheng H, Kellog SJ, Erickson AE, Dubauskie NA, Smith ET.},
journal = {J Biol Inorg Chem},
year = {2003},
doi = {10.1007/s00775-002-0380-0},
pmid = {12459894}
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@article{lin104899,
title = {Correlation between hydrogen bond lengths and reduction potentials in Clostridium pasteurianum rubredoxin.},
author = {Lin IJ, Gebel EB, Machonkin TE, Westler WM, Markley JL.},
journal = {J Am Chem Soc},
year = {2003},
doi = {10.1021/ja028710n},
pmid = {12568591}
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@article{lin105536,
title = {Construction and screening of metagenomic libraries derived from enrichment cultures: generation of a gene bank for genes conferring alcohol oxidoreductase activity on Escherichia coli.},
author = {Knietsch A, Waschkowitz T, Bowien S, Henne A, Daniel R.},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/aem.69.3.1408-1416.2003},
pmid = {12620823}
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@article{lin104988,
title = {Comparative genomic analysis of dha regulon and related genes for anaerobic glycerol metabolism in bacteria.},
author = {Sun J, van den Heuvel J, Soucaille P, Qu Y, Zeng AP.},
journal = {Biotechnol Prog},
year = {2003},
doi = {10.1021/bp025739m},
pmid = {12675558}
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@article{lin104961,
title = {Hydrogen bonds in rubredoxins from mesophilic and hyperthermophilic organisms.},
author = {Bougault CM, Eidsness MK, Prestegard JH.},
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author = {Rouhier N, Unno H, Bandyopadhyay S, Masip L, Kim SK, Hirasawa M, Gualberto JM, Lattard V, Kusunoki M, Knaff DB, Georgiou G, Hase T, Johnson MK, Jacquot JP.},
journal = {Proc Natl Acad Sci U S A},
year = {2007},
doi = {10.1073/pnas.0702268104},
pmid = {17460036}
}
@article{lin105550,
title = {Glyceraldehyde-3-phosphate ferredoxin oxidoreductase from Methanococcus maripaludis.},
author = {Park MO, Mizutani T, Jones PR.},
journal = {J Bacteriol},
year = {2007},
doi = {10.1128/jb.00828-07},
pmid = {17704226}
}
@article{lin105460,
title = {Reduction of Trimethylene Dipyridyl with Illuminated Chloroplasts.},
author = {Black CC.},
journal = {Science},
year = {1965},
doi = {10.1126/science.149.3679.62},
pmid = {17737790}
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@article{lin105493,
title = {Hydrogen production by termite gut protists: characterization of iron hydrogenases of Parabasalian symbionts of the termite Coptotermes formosanus.},
author = {Inoue J, Saita K, Kudo T, Ui S, Ohkuma M.},
journal = {Eukaryot Cell},
year = {2007},
doi = {10.1128/ec.00251-07},
pmid = {17766465}
}
@article{lin104889,
title = {Dark H2 fermentation from sucrose and xylose using H2-producing indigenous bacteria: feasibility and kinetic studies.},
author = {Lo YC, Chen WM, Hung CH, Chen SD, Chang JS.},
journal = {Water Res},
year = {2008},
doi = {10.1016/j.watres.2007.08.023},
pmid = {17889245}
}
@article{lin104882,
title = {Dark hydrogen fermentation from hydrolyzed starch treated with recombinant amylase originating from Caldimonas taiwanensis On1.},
author = {Chen SD, Sheu DS, Chen WM, Lo YC, Huang TI, Lin CY, Chang JS.},
journal = {Biotechnol Prog},
year = {2007},
doi = {10.1021/bp070187z},
pmid = {17924646}
}
@article{lin104622,
title = {Coupled ferredoxin and crotonyl coenzyme A (CoA) reduction with NADH catalyzed by the butyryl-CoA dehydrogenase/Etf complex from Clostridium kluyveri.},
author = {Li F, Hinderberger J, Seedorf H, Zhang J, Buckel W, Thauer RK.},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/jb.01417-07},
pmid = {17993531}
}
@article{lin105430,
title = {Energy conservation via electron-transferring flavoprotein in anaerobic bacteria.},
author = {Herrmann G, Jayamani E, Mai G, Buckel W.},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/jb.01422-07},
pmid = {18039764}
}
@article{lin105374,
title = {NMR and X-ray analysis of structural additivity in metal binding site-swapped hybrids of rubredoxin.},
author = {LeMaster DM, Anderson JS, Wang L, Guo Y, Li H, Hernandez G.},
journal = {BMC Struct Biol},
year = {2007},
doi = {10.1186/1472-6807-7-81},
pmid = {18053245}
}
@article{lin105327,
title = {High affinity selenium uptake in a keratinocyte model.},
author = {Ganyc D, Self WT.},
journal = {FEBS Lett},
year = {2008},
doi = {10.1016/j.febslet.2007.12.022},
pmid = {18154736}
}
@article{lin105470,
title = {The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features.},
author = {Seedorf H, Fricke WF, Veith B, Bruggemann H, Liesegang H, Strittmatter A, Miethke M, Buckel W, Hinderberger J, Li F, Hagemeier C, Thauer RK, Gottschalk G.},
journal = {Proc Natl Acad Sci U S A},
year = {2008},
doi = {10.1073/pnas.0711093105},
pmid = {18218779}
}
@article{lin105519,
title = {Abundances and distributions of the dominant nifH phylotypes in the Northern Atlantic Ocean.},
author = {Langlois RJ, Hummer D, LaRoche J.},
journal = {Appl Environ Microbiol},
year = {2008},
doi = {10.1128/aem.01720-07},
pmid = {18245263}
}
@article{lin104864,
title = {Dithiomethylether as a ligand in the hydrogenase h-cluster.},
author = {Pandey AS, Harris TV, Giles LJ, Peters JW, Szilagyi RK.},
journal = {J Am Chem Soc},
year = {2008},
doi = {10.1021/ja711187e},
pmid = {18324814}
}
@article{lin105566,
title = {Diiron dithiolato carbonyls related to the H(ox)CO state of [FeFe]-hydrogenase.},
author = {Justice AK, Nilges MJ, Rauchfuss TB, Wilson SR, De Gioia L, Zampella G.},
journal = {J Am Chem Soc},
year = {2008},
doi = {10.1021/ja7113008},
pmid = {18341276}
}
@article{lin105091,
title = {"Iron priming" guides folding of denatured aporubredoxins.},
author = {Bonomi F, Iametti S, Ferranti P, Kurtz DM, Morleo A, Ragg EM.},
journal = {J Biol Inorg Chem},
year = {2008},
doi = {10.1007/s00775-008-0385-4},
pmid = {18446387}
}
@article{lin105533,
title = {Were there any "misassignments" among iron-sulfur clusters N4, N5 and N6b in NADH-quinone oxidoreductase (complex I)?},
author = {Ohnishi T, Nakamaru-Ogiso E.},
journal = {Biochim Biophys Acta},
year = {2008},
doi = {10.1016/j.bbabio.2008.04.032},
pmid = {18486592}
}
@article{lin104875,
title = {Variation of average g values and effective exchange coupling constants among [2Fe-2S] clusters: a density functional theory study of the impact of localization (trapping forces) versus delocalization (double-exchange) as competing factors.},
author = {Orio M, Mouesca JM.},
journal = {Inorg Chem},
year = {2008},
doi = {10.1021/ic701730h},
pmid = {18491857}
}
@article{lin104856,
title = {Characteristics of rapidly formed hydrogen-producing granules and biofilms.},
author = {Zhang ZP, Adav SS, Show KY, Tay JH, Liang DT, Lee DJ, Su A.},
journal = {Biotechnol Bioeng},
year = {2008},
doi = {10.1002/bit.21956},
pmid = {18496878}
}
@article{lin105563,
title = {Structure of human J-type co-chaperone HscB reveals a tetracysteine metal-binding domain.},
author = {Bitto E, Bingman CA, Bittova L, Kondrashov DA, Bannen RM, Fox BG, Markley JL, Phillips GN.},
journal = {J Biol Chem},
year = {2008},
doi = {10.1074/jbc.m804746200},
pmid = {18713742}
}
@article{lin104872,
title = {Biochemical characterization of a mitochondrial-like organelle from Blastocystis sp. subtype 7.},
author = {Lantsman Y, Tan KSW, Morada M, Yarlett N.},
journal = {Microbiology (Reading)},
year = {2008},
doi = {10.1099/mic.0.2008/017897-0},
pmid = {18757809}
}
@article{lin105558,
title = {O2 and reactive oxygen species detoxification complex, composed of O2-responsive NADH:rubredoxin oxidoreductase-flavoprotein A2-desulfoferrodoxin operon enzymes, rubperoxin, and rubredoxin, in Clostridium acetobutylicum.},
author = {Kawasaki S, Sakai Y, Takahashi T, Suzuki I, Niimura Y.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.01425-08},
pmid = {19124587}
}
@article{lin105468,
title = {A substrate channel in the nitrogenase MoFe protein.},
author = {Barney BM, Yurth MG, Dos Santos PC, Dean DR, Seefeldt LC.},
journal = {J Biol Inorg Chem},
year = {2009},
doi = {10.1007/s00775-009-0544-2},
pmid = {19458968}
}
@article{lin104863,
title = {Quantitative fluorescent in-situ hybridization: a hypothesized competition mode between two dominant bacteria groups in hydrogen-producing anaerobic sludge processes.},
author = {Huang CL, Chen CC, Lin CY, Liu WT.},
journal = {Water Sci Technol},
year = {2009},
doi = {10.2166/wst.2009.201},
pmid = {19474483}
}
@article{lin105500,
title = {Specific interactions between four molybdenum-binding proteins contribute to Mo-dependent gene regulation in Rhodobacter capsulatus.},
author = {Wiethaus J, Muller A, Neumann M, Neumann S, Leimkuhler S, Narberhaus F, Masepohl B.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00526-09},
pmid = {19502397}
}
@article{lin105481,
title = {Iron-binding characterization and polysaccharide production by Klebsiella oxytoca strain isolated from mine acid drainage.},
author = {Baldi F, Marchetto D, Battistel D, Daniele S, Faleri C, De Castro C, Lanzetta R.},
journal = {J Appl Microbiol},
year = {2009},
doi = {10.1111/j.1365-2672.2009.04302.x},
pmid = {19508299}
}
@article{lin104849,
title = {Construction of a synthetic YdbK-dependent pyruvate:H2 pathway in Escherichia coli BL21(DE3).},
author = {Akhtar MK, Jones PR.},
journal = {Metab Eng},
year = {2009},
doi = {10.1016/j.ymben.2009.01.002},
pmid = {19558967}
}
@article{lin105498,
title = {Conserved amino acid sequence features in the alpha subunits of MoFe, VFe, and FeFe nitrogenases.},
author = {Glazer AN, Kechris KJ.},
journal = {PLoS One},
year = {2009},
doi = {10.1371/journal.pone.0006136},
pmid = {19578539}
}
@article{lin105547,
title = {Involvement of NADH:acceptor oxidoreductase and butyryl coenzyme A dehydrogenase in reversed electron transport during syntrophic butyrate oxidation by Syntrophomonas wolfei.},
author = {Muller N, Schleheck D, Schink B.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.01605-08},
pmid = {19648244}
}
@article{lin105545,
title = {Genome mining in Sorangium cellulosum So ce56: identification and characterization of the homologous electron transfer proteins of a myxobacterial cytochrome P450.},
author = {Ewen KM, Hannemann F, Khatri Y, Perlova O, Kappl R, Krug D, Huttermann J, Muller R, Bernhardt R.},
journal = {J Biol Chem},
year = {2009},
doi = {10.1074/jbc.m109.021717},
pmid = {19696019}
}
@article{lin105475,
title = {Proteomic profiling of L-cysteine induced selenite resistance in Enterobacter sp. YSU.},
author = {Jasenec A, Barasa N, Kulkarni S, Shaik N, Moparthi S, Konda V, Caguiat J.},
journal = {Proteome Sci},
year = {2009},
doi = {10.1186/1477-5956-7-30},
pmid = {19715574}
}
@article{lin105381,
title = {Characterization of a salt-induced DhAHP, a gene coding for alkyl hydroperoxide reductase, from the extremely halophilic yeast Debaryomyces hansenii.},
author = {Chao HF, Yen YF, Ku MS.},
journal = {BMC Microbiol},
year = {2009},
doi = {10.1186/1471-2180-9-182},
pmid = {19715588}
}
@article{lin105507,
title = {Pyruvate formate lyase is required for pneumococcal fermentative metabolism and virulence.},
author = {Yesilkaya H, Spissu F, Carvalho SM, Terra VS, Homer KA, Benisty R, Porat N, Neves AR, Andrew PW.},
journal = {Infect Immun},
year = {2009},
doi = {10.1128/iai.00178-09},
pmid = {19752030}
}
@article{lin105478,
title = {Molybdenum trafficking for nitrogen fixation.},
author = {Hernandez JA, George SJ, Rubio LM.},
journal = {Biochemistry},
year = {2009},
doi = {10.1021/bi901217p},
pmid = {19772354}
}
@article{lin105027,
title = {Hyperfine-shifted (13)C and (15)N NMR signals from Clostridium pasteurianum rubredoxin: extensive assignments and quantum chemical verification.},
author = {Lin IJ, Xia B, King DS, Machonkin TE, Westler WM, Markley JL.},
journal = {J Am Chem Soc},
year = {2009},
doi = {10.1021/ja905928x},
pmid = {19799419}
}
@article{lin104855,
title = {Clostridium arbusti sp. nov., an anaerobic bacterium isolated from pear orchard soil.},
author = {Jung MY, Park IS, Kim W, Kim HL, Paek WK, Chang YH.},
journal = {Int J Syst Evol Microbiol},
year = {2010},
doi = {10.1099/ijs.0.013953-0},
pmid = {19915114}
}
@article{lin105123,
title = {An NMR structural study of nickel-substituted rubredoxin.},
author = {Goodfellow BJ, Duarte IC, Macedo AL, Volkman BF, Nunes SG, Moura I, Markley JL, Moura JJ.},
journal = {J Biol Inorg Chem},
year = {2010},
doi = {10.1007/s00775-009-0613-6},
pmid = {19997764}
}
@article{lin104836,
title = {Thermostability in rubredoxin and its relationship to mechanical rigidity.},
author = {Rader AJ.},
journal = {Phys Biol},
year = {2009},
doi = {10.1088/1478-3975/7/1/016002},
pmid = {20009190}
}
@article{lin105307,
title = {Characterization of a thioredoxin-thioredoxin reductase system from the hyperthermophilic bacterium Thermotoga maritima.},
author = {Yang X, Ma K.},
journal = {J Bacteriol},
year = {2010},
doi = {10.1128/jb.01035-09},
pmid = {20061476}
}
@article{lin104655,
title = {Detection and quantification of functional genes of cellulose- degrading, fermentative, and sulfate-reducing bacteria and methanogenic archaea.},
author = {Pereyra LP, Hiibel SR, Prieto Riquelme MV, Reardon KF, Pruden A.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.01285-09},
pmid = {20139321}
}
@article{lin105448,
title = {The molecular determinants of the increased reduction potential of the rubredoxin domain of rubrerythrin relative to rubredoxin.},
author = {Luo Y, Ergenekan CE, Fischer JT, Tan ML, Ichiye T.},
journal = {Biophys J},
year = {2010},
doi = {10.1016/j.bpj.2009.11.006},
pmid = {20159152}
}
@article{lin105471,
title = {Inactivation of [Fe-Fe]-Hydrogenase by O(2). Thermodynamics and Frontier Molecular Orbitals Analyses.},
author = {Dogaru D, Motiu S, Gogonea V.},
journal = {Int J Quantum Chem},
year = {2009},
doi = {10.1002/qua.21875},
pmid = {20160838}
}
@article{lin105530,
title = {Insulation of a synthetic hydrogen metabolism circuit in bacteria.},
author = {Agapakis CM, Ducat DC, Boyle PM, Wintermute EH, Way JC, Silver PA.},
journal = {J Biol Eng},
year = {2010},
doi = {10.1186/1754-1611-4-3},
pmid = {20184755}
}
@article{lin105480,
title = {The VirSR two-component signal transduction system regulates NetB toxin production in Clostridium perfringens.},
author = {Cheung JK, Keyburn AL, Carter GP, Lanckriet AL, Van Immerseel F, Moore RJ, Rood JI.},
journal = {Infect Immun},
year = {2010},
doi = {10.1128/iai.00123-10},
pmid = {20457789}
}
@article{lin105256,
title = {A cell-free microtiter plate screen for improved [FeFe] hydrogenases.},
author = {Stapleton JA, Swartz JR.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0010554},
pmid = {20479937}
}
@article{lin105365,
title = {Residue Mutations in [Fe-Fe]-hydrogenase Impedes O(2) Binding: A QM/MM Investigation.},
author = {Dogaru D, Motiu S, Gogonea V.},
journal = {Int J Quantum Chem},
year = {2009},
doi = {10.1002/qua.22331},
pmid = {20485511}
}
@article{lin105494,
title = {Crystal structure of the nitrogenase-like dark operative protochlorophyllide oxidoreductase catalytic complex (ChlN/ChlB)2.},
author = {Brocker MJ, Schomburg S, Heinz DW, Jahn D, Schubert WD, Moser J.},
journal = {J Biol Chem},
year = {2010},
doi = {10.1074/jbc.m110.126698},
pmid = {20558746}
}
@article{lin105079,
title = {Crystallization and preliminary X-ray diffraction studies of hyperthermophilic archaeal Rieske-type ferredoxin (ARF) from Sulfolobus solfataricus P1.},
author = {Kounosu A, Hasegawa K, Iwasaki T, Kumasaka T.},
journal = {Acta Crystallogr Sect F Struct Biol Cryst Commun},
year = {2010},
doi = {10.1107/s1744309110019263},
pmid = {20606288}
}
@article{lin105412,
title = {Clostridium ljungdahlii represents a microbial production platform based on syngas.},
author = {Kopke M, Held C, Hujer S, Liesegang H, Wiezer A, Wollherr A, Ehrenreich A, Liebl W, Gottschalk G, Durre P.},
journal = {Proc Natl Acad Sci U S A},
year = {2010},
doi = {10.1073/pnas.1004716107},
pmid = {20616070}
}
@article{lin105404,
title = {Fold versus sequence effects on the driving force for protein-mediated electron transfer.},
author = {Perrin BS, Ichiye T.},
journal = {Proteins},
year = {2010},
doi = {10.1002/prot.22794},
pmid = {20635418}
}
@article{lin104609,
title = {NADP+ reduction with reduced ferredoxin and NADP+ reduction with NADH are coupled via an electron-bifurcating enzyme complex in Clostridium kluyveri.},
author = {Wang S, Huang H, Moll J, Thauer RK.},
journal = {J Bacteriol},
year = {2010},
doi = {10.1128/jb.00612-10},
pmid = {20675474}
}
@article{lin104796,
title = {Development of flow cytometry technique for detection of thinning of peptidoglycan layer as a result of solvent production by Clostridium pasteurianum.},
author = {Linhova M, Patakova P, Lipovsky J, Fribert P, Paulova L, Rychtera M, Melzoch K.},
journal = {Folia Microbiol (Praha)},
year = {2010},
doi = {10.1007/s12223-010-0054-1},
pmid = {20680567}
}
@article{lin105345,
title = {Solvation effects on S K-edge XAS spectra of Fe-S proteins: normal and inverse effects on WT and mutant rubredoxin.},
author = {Sun N, Dey A, Xiao Z, Wedd AG, Hodgson KO, Hedman B, Solomon EI.},
journal = {J Am Chem Soc},
year = {2010},
doi = {10.1021/ja102807x},
pmid = {20726554}
}
@article{lin105520,
title = {Quantification of nitrogen reductase and nitrite reductase genes in soil of thinned and clear-cut Douglas-fir stands by using real-time PCR.},
author = {Levy-Booth DJ, Winder RS.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.02188-09},
pmid = {20802070}
}
@article{lin105423,
title = {Comparative bioactivation of the novel anti-tuberculosis agent PA-824 in Mycobacteria and a subcellular fraction of human liver.},
author = {Dogra M, Palmer BD, Bashiri G, Tingle MD, Shinde SS, Anderson RF, O'Toole R, Baker EN, Denny WA, Helsby NA.},
journal = {Br J Pharmacol},
year = {2011},
doi = {10.1111/j.1476-5381.2010.01040.x},
pmid = {20955364}
}
@article{lin104793,
title = {Thermoaciduric Clostridium pasteurianum spoilage of shelf-stable apple juice.},
author = {Feng G, Churey JJ, Worobo RW.},
journal = {J Food Prot},
year = {2010},
doi = {10.4315/0362-028x-73.10.1886},
pmid = {21067677}
}
@article{lin105557,
title = {Nitrogen fixation and hydrogen metabolism in cyanobacteria.},
author = {Bothe H, Schmitz O, Yates MG, Newton WE.},
journal = {Microbiol Mol Biol Rev},
year = {2010},
doi = {10.1128/mmbr.00033-10},
pmid = {21119016}
}
@article{lin105243,
title = {High-yield expression of heterologous [FeFe] hydrogenases in Escherichia coli.},
author = {Kuchenreuther JM, Grady-Smith CS, Bingham AS, George SJ, Cramer SP, Swartz JR.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0015491},
pmid = {21124800}
}
@article{lin104883,
title = {Hyperfine-shifted 13C resonance assignments in an iron-sulfur protein with quantum chemical verification: aliphatic C-H···S 3-center-4-electron interactions.},
author = {Westler WM, Lin IJ, Perczel A, Weinhold F, Markley JL.},
journal = {J Am Chem Soc},
year = {2011},
doi = {10.1021/ja1049059},
pmid = {21207994}
}
@article{lin105425,
title = {Unraveling the molecular mechanisms of nitrogenase conformational protection against oxygen in diazotrophic bacteria.},
author = {Lery LM, Bitar M, Costa MG, Rossle SC, Bisch PM.},
journal = {BMC Genomics},
year = {2010},
doi = {10.1186/1471-2164-11-s5-s7},
pmid = {21210973}
}
@article{lin104625,
title = {Constructing and testing the thermodynamic limits of synthetic NAD(P)H:H2 pathways.},
author = {Veit A, Akhtar MK, Mizutani T, Jones PR.},
journal = {Microb Biotechnol},
year = {2008},
doi = {10.1111/j.1751-7915.2008.00033.x},
pmid = {21261858}
}
@article{lin105187,
title = {Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea.},
author = {Kaster AK, Moll J, Parey K, Thauer RK.},
journal = {Proc Natl Acad Sci U S A},
year = {2011},
doi = {10.1073/pnas.1016761108},
pmid = {21262829}
}
@article{lin104831,
title = {The cyanobacterium Synechocystis sp. PCC 6803 is able to express an active [FeFe]-hydrogenase without additional maturation proteins.},
author = {Berto P, D'Adamo S, Bergantino E, Vallese F, Giacometti GM, Costantini P.},
journal = {Biochem Biophys Res Commun},
year = {2011},
doi = {10.1016/j.bbrc.2011.01.095},
pmid = {21284939}
}
@article{lin104834,
title = {On understanding proton transfer to the biocatalytic [Fe-Fe](H) sub-cluster in [Fe-Fe]H(2)ases: QM/MM MD simulations.},
author = {Hong G, Cornish AJ, Hegg EL, Pachter R.},
journal = {Biochim Biophys Acta},
year = {2011},
doi = {10.1016/j.bbabio.2011.01.011},
pmid = {21296047}
}
@article{lin7905,
title = {Butanol production from thin stillage using Clostridium pasteurianum.},
author = {Ahn JH, Sang BI, Um Y},
journal = {Bioresour Technol},
year = {2011},
doi = {10.1016/j.biortech.2011.01.046},
pmid = {21316947}
}
@article{lin105073,
title = {Structure prediction and molecular simulation of gases diffusion pathways in hydrogenase.},
author = {Sundaram S, Tripathi A, Gupta V.},
journal = {Bioinformation},
year = {2010},
doi = {10.6026/97320630005177},
pmid = {21364783}
}
@article{lin105351,
title = {Rewiring hydrogenase-dependent redox circuits in cyanobacteria.},
author = {Ducat DC, Sachdeva G, Silver PA.},
journal = {Proc Natl Acad Sci U S A},
year = {2011},
doi = {10.1073/pnas.1016026108},
pmid = {21368150}
}
@article{lin105539,
title = {The maturation factors HoxR and HoxT contribute to oxygen tolerance of membrane-bound [NiFe] hydrogenase in Ralstonia eutropha H16.},
author = {Fritsch J, Lenz O, Friedrich B.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.01427-10},
pmid = {21441514}
}
@article{lin104820,
title = {Hydrolysis of lignocellulosic feedstock by novel cellulases originating from Pseudomonas sp. CL3 for fermentative hydrogen production.},
author = {Cheng CL, Chang JS.},
journal = {Bioresour Technol},
year = {2011},
doi = {10.1016/j.biortech.2011.03.053},
pmid = {21481585}
}
@article{lin105406,
title = {Dynamics of the [4Fe-4S] cluster in Pyrococcus furiosus D14C ferredoxin via nuclear resonance vibrational and resonance Raman spectroscopies, force field simulations, and density functional theory calculations.},
author = {Mitra D, Pelmenschikov V, Guo Y, Case DA, Wang H, Dong W, Tan ML, Ichiye T, Jenney FE, Adams MW, Adams MW, Yoda Y, Zhao J, Cramer SP.},
journal = {Biochemistry},
year = {2011},
doi = {10.1021/bi200046p},
pmid = {21500788}
}
@article{lin104832,
title = {Development of an enantiomer-specific stable carbon isotope analysis (ESIA) method for assessing the fate of alpha-hexachlorocyclo-hexane in the environment.},
author = {Badea SL, Vogt C, Gehre M, Fischer A, Danet AF, Richnow HH.},
journal = {Rapid Commun Mass Spectrom},
year = {2011},
doi = {10.1002/rcm.4987},
pmid = {21504001}
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@article{lin105490,
title = {Bio-palladium: from metal recovery to catalytic applications.},
author = {De Corte S, Hennebel T, De Gusseme B, Verstraete W, Boon N.},
journal = {Microb Biotechnol},
year = {2012},
doi = {10.1111/j.1751-7915.2011.00265.x},
pmid = {21554561}
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@article{lin105463,
title = {Photosynthetic electron partitioning between [FeFe]-hydrogenase and ferredoxin:NADP+-oxidoreductase (FNR) enzymes in vitro.},
author = {Yacoby I, Pochekailov S, Toporik H, Ghirardi ML, King PW, Zhang S.},
journal = {Proc Natl Acad Sci U S A},
year = {2011},
doi = {10.1073/pnas.1103659108},
pmid = {21606330}
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@article{lin105438,
title = {Regulation of F0F1-ATPase from Synechocystis sp. PCC 6803 by gamma and epsilon subunits is significant for light/dark adaptation.},
author = {Imashimizu M, Bernat G, Sunamura E, Broekmans M, Konno H, Isato K, Rogner M, Hisabori T.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m111.234138},
pmid = {21610078}
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@article{lin105534,
title = {A synthetic system links FeFe-hydrogenases to essential E. coli sulfur metabolism.},
author = {Barstow B, Agapakis CM, Boyle PM, Grandl G, Silver PA, Wintermute EH.},
journal = {J Biol Eng},
year = {2011},
doi = {10.1186/1754-1611-5-7},
pmid = {21615937}
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@article{lin105473,
title = {Clostridium difficile has two parallel and essential Sec secretion systems.},
author = {Fagan RP, Fairweather NF.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m111.263889},
pmid = {21659510}
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@article{lin104960,
title = {Fate of nitrogen-fixing bacteria in crude oil contaminated wetland ultisol.},
author = {John RC, Itah AY, Essien JP, Ikpe DI.},
journal = {Bull Environ Contam Toxicol},
year = {2011},
doi = {10.1007/s00128-011-0320-1},
pmid = {21755289}
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@article{lin105434,
title = {Electron transport in acetate-grown Methanosarcina acetivorans.},
author = {Wang M, Wang M, Tomb JF, Ferry JG.},
journal = {BMC Microbiol},
year = {2011},
doi = {10.1186/1471-2180-11-165},
pmid = {21781343}
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@article{lin104813,
title = {Genetic diversity and amplification of different clostridial [FeFe] hydrogenases by group-specific degenerate primers.},
author = {Calusinska M, Joris B, Wilmotte A.},
journal = {Lett Appl Microbiol},
year = {2011},
doi = {10.1111/j.1472-765x.2011.03135.x},
pmid = {21838748}
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@article{lin105437,
title = {Hydrogen production by recombinant Escherichia coli strains.},
author = {Maeda T, Sanchez-Torres V, Wood TK.},
journal = {Microb Biotechnol},
year = {2012},
doi = {10.1111/j.1751-7915.2011.00282.x},
pmid = {21895995}
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@article{lin104937,
title = {Mechanism of proton transfer in [FeFe]-hydrogenase from Clostridium pasteurianum.},
author = {Cornish AJ, Gartner K, Yang H, Peters JW, Hegg EL.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m111.254664},
pmid = {21900241}
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@article{lin105560,
title = {Kinetic and thermodynamic features reveal that Escherichia coli BCP is an unusually versatile peroxiredoxin.},
author = {Reeves SA, Parsonage D, Nelson KJ, Poole LB.},
journal = {Biochemistry},
year = {2011},
doi = {10.1021/bi200935d},
pmid = {21910476}
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@article{lin104822,
title = {Catalytic turnover of [FeFe]-hydrogenase based on single-molecule imaging.},
author = {Madden C, Vaughn MD, Diez-Perez I, Brown KA, King PW, Gust D, Moore AL, Moore TA.},
journal = {J Am Chem Soc},
year = {2012},
doi = {10.1021/ja207461t},
pmid = {21916466}
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@article{lin7904,
title = {Optimization of medium compositions favoring butanol and 1,3-propanediol production from glycerol by Clostridium pasteurianum.},
author = {Moon C, Lee CH, Sang BI, Um Y},
journal = {Bioresour Technol},
year = {2011},
doi = {10.1016/j.biortech.2011.08.094},
pmid = {21945663}
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@article{lin370087,
title = {Enterococcus lactis sp. nov., from Italian raw milk cheeses.},
author = {Morandi S, Cremonesi P, Povolo M, Brasca M.},
journal = {Int J Syst Evol Microbiol},
year = {2012},
doi = {10.1099/ijs.0.030825-0},
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@article{lin105449,
title = {Molecular dynamics simulations and drug discovery.},
author = {Durrant JD, McCammon JA.},
journal = {BMC Biol},
year = {2011},
doi = {10.1186/1741-7007-9-71},
pmid = {22035460}
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@article{lin104784,
title = {Continuous butanol production with reduced byproducts formation from glycerol by a hyper producing mutant of Clostridium pasteurianum.},
author = {Malaviya A, Jang YS, Lee SY.},
journal = {Appl Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s00253-011-3629-0},
pmid = {22052388}
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@article{lin105057,
title = {Importance of the protein framework for catalytic activity of [FeFe]-hydrogenases.},
author = {Knorzer P, Silakov A, Foster CE, Armstrong FA, Lubitz W, Happe T.},
journal = {J Biol Chem},
year = {2012},
doi = {10.1074/jbc.m111.305797},
pmid = {22110126}
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@article{lin104608,
title = {1,3-Propanediol production from glycerol by a newly isolated Trichococcus strain.},
author = {van Gelder AH, Aydin R, Alves MM, Stams AJ.},
journal = {Microb Biotechnol},
year = {2012},
doi = {10.1111/j.1751-7915.2011.00318.x},
pmid = {22117537}
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@article{lin105469,
title = {Eukaryotic DNA polymerases require an iron-sulfur cluster for the formation of active complexes.},
author = {Netz DJ, Stith CM, Stumpfig M, Kopf G, Vogel D, Genau HM, Stodola JL, Lill R, Burgers PM, Pierik AJ.},
journal = {Nat Chem Biol},
year = {2011},
doi = {10.1038/nchembio.721},
pmid = {22119860}
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@article{lin105166,
title = {Combining acid-base, redox and substrate binding functionalities to give a complete model for the [FeFe]-hydrogenase.},
author = {Camara JM, Rauchfuss TB.},
journal = {Nat Chem},
year = {2011},
doi = {10.1038/nchem.1180},
pmid = {22169868}
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@article{lin105446,
title = {Bacteroidales ectosymbionts of gut flagellates shape the nitrogen-fixing community in dry-wood termites.},
author = {Desai MS, Brune A.},
journal = {ISME J},
year = {2012},
doi = {10.1038/ismej.2011.194},
pmid = {22189498}
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@article{lin7903,
title = {Impact of impurities in biodiesel-derived crude glycerol on the fermentation by Clostridium pasteurianum ATCC 6013.},
author = {Venkataramanan KP, Boatman JJ, Kurniawan Y, Taconi KA, Bothun GD, Scholz C},
journal = {Appl Microbiol Biotechnol},
year = {2011},
doi = {10.1007/s00253-011-3766-5},
pmid = {22202963}
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@article{lin104782,
title = {Fermentation of crude glycerol from biodiesel production by Clostridium pasteurianum.},
author = {Jensen TO, Kvist T, Mikkelsen MJ, Christensen PV, Westermann P.},
journal = {J Ind Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s10295-011-1077-6},
pmid = {22212343}
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@article{lin105399,
title = {Combined inactivation of the Clostridium cellulolyticum lactate and malate dehydrogenase genes substantially increases ethanol yield from cellulose and switchgrass fermentations.},
author = {Li Y, Tschaplinski TJ, Engle NL, Hamilton CY, Rodriguez M, Liao JC, Schadt CW, Guss AM, Yang Y, Graham DE.},
journal = {Biotechnol Biofuels},
year = {2012},
doi = {10.1186/1754-6834-5-2},
pmid = {22214220}
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@article{lin105492,
title = {Quaternary ammonium oxidative demethylation: X-ray crystallographic, resonance Raman, and UV-visible spectroscopic analysis of a Rieske-type demethylase.},
author = {Daughtry KD, Xiao Y, Stoner-Ma D, Cho E, Orville AM, Liu P, Allen KN.},
journal = {J Am Chem Soc},
year = {2012},
doi = {10.1021/ja2111898},
pmid = {22224443}
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@article{lin105356,
title = {Homology inference of protein-protein interactions via conserved binding sites.},
author = {Tyagi M, Thangudu RR, Zhang D, Bryant SH, Madej T, Panchenko AR.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0028896},
pmid = {22303436}
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@article{lin105455,
title = {Fructose degradation in the haloarchaeon Haloferax volcanii involves a bacterial type phosphoenolpyruvate-dependent phosphotransferase system, fructose-1-phosphate kinase, and class II fructose-1,6-bisphosphate aldolase.},
author = {Pickl A, Johnsen U, Schonheit P.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.00200-12},
pmid = {22493022}
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@article{lin104807,
title = {Rapid flow cytometric method for viability determination of solventogenic clostridia.},
author = {Linhova M, Branska B, Patakova P, Lipovsky J, Fribert P, Rychtera M, Melzoch K.},
journal = {Folia Microbiol (Praha)},
year = {2012},
doi = {10.1007/s12223-012-0131-8},
pmid = {22528306}
}
@article{lin104799,
title = {Inhibition of biocatalysis in [Fe-Fe] hydrogenase by oxygen: molecular dynamics and density functional theory calculations.},
author = {Hong G, Pachter R.},
journal = {ACS Chem Biol},
year = {2012},
doi = {10.1021/cb3001149},
pmid = {22563793}
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@article{lin104620,
title = {Electron bifurcation involved in the energy metabolism of the acetogenic bacterium Moorella thermoacetica growing on glucose or H2 plus CO2.},
author = {Huang H, Wang S, Moll J, Thauer RK.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.00385-12},
pmid = {22582275}
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@article{lin105452,
title = {Characterization of the [2Fe-2S] cluster of Escherichia coli transcription factor IscR.},
author = {Fleischhacker AS, Stubna A, Hsueh KL, Guo Y, Teter SJ, Rose JC, Brunold TC, Markley JL, Munck E, Kiley PJ.},
journal = {Biochemistry},
year = {2012},
doi = {10.1021/bi3003204},
pmid = {22583201}
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@article{lin105263,
title = {ClosTron-mediated engineering of Clostridium.},
author = {Kuehne SA, Minton NP.},
journal = {Bioengineered},
year = {2012},
doi = {10.4161/bioe.21004},
pmid = {22750794}
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@article{lin105508,
title = {Biodiesel biorefinery: opportunities and challenges for microbial production of fuels and chemicals from glycerol waste.},
author = {Almeida JR, Favaro LC, Quirino BF.},
journal = {Biotechnol Biofuels},
year = {2012},
doi = {10.1186/1754-6834-5-48},
pmid = {22809320}
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@article{lin105337,
title = {A bacterial electron-bifurcating hydrogenase.},
author = {Schuchmann K, Muller V.},
journal = {J Biol Chem},
year = {2012},
doi = {10.1074/jbc.m112.395038},
pmid = {22810230}
}
@article{lin370085,
title = {Fungal decay and shelf life of oranges coated with chitosan and bergamot, thyme, and tea tree essential oils.},
author = {Chafer M, Sanchez-Gonzalez L, Gonzalez-Martinez Ch, Chiralt A.},
journal = {J Food Sci},
year = {2012},
doi = {10.1111/j.1750-3841.2012.02827.x},
pmid = {22860582}
}
@article{lin104893,
title = {Production of 1,3-PDO and butanol by a mutant strain of Clostridium pasteurianum with increased tolerance towards crude glycerol.},
author = {Jensen TO, Kvist T, Mikkelsen MJ, Westermann P.},
journal = {AMB Express},
year = {2012},
doi = {10.1186/2191-0855-2-44},
pmid = {22901717}
}
@article{lin105192,
title = {Hydrogen and Polyhydroxybutyrate Producing Abilities of Bacillus spp. From Glucose in Two Stage System.},
author = {Patel SK, Singh M, Kalia VC.},
journal = {Indian J Microbiol},
year = {2011},
doi = {10.1007/s12088-011-0236-9},
pmid = {23024402}
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@article{lin105251,
title = {New insights into [FeFe] hydrogenase activation and maturase function.},
author = {Kuchenreuther JM, Britt RD, Swartz JR.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0045850},
pmid = {23049878}
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@article{lin104774,
title = {Enhancing butanol production with Clostridium pasteurianum CH4 using sequential glucose-glycerol addition and simultaneous dual-substrate cultivation strategies.},
author = {Kao WC, Lin DS, Cheng CL, Chen BY, Lin CY, Chang JS.},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2012.09.108},
pmid = {23127835}
}
@article{lin104798,
title = {Proliferation of diversified clostridial species during biological soil disinfestation incorporated with plant biomass under various conditions.},
author = {Mowlick S, Takehara T, Kaku N, Ueki K, Ueki A.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-012-4532-z},
pmid = {23132344}
}
@article{lin105362,
title = {Assessing the chemical accuracy of protein structures via peptide acidity.},
author = {Anderson JS, Hernandez G, LeMaster DM.},
journal = {Biophys Chem},
year = {2013},
doi = {10.1016/j.bpc.2012.10.005},
pmid = {23182463}
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@article{lin105013,
title = {Nuclear resonance vibrational spectroscopy and electron paramagnetic resonance spectroscopy of 57Fe-enriched [FeFe] hydrogenase indicate stepwise assembly of the H-cluster.},
author = {Kuchenreuther JM, Guo Y, Wang H, Myers WK, George SJ, Boyke CA, Yoda Y, Alp EE, Zhao J, Britt RD, Swartz JR, Cramer SP.},
journal = {Biochemistry},
year = {2013},
doi = {10.1021/bi301336r},
pmid = {23249091}
}
@article{lin105012,
title = {Genome-guided analysis of physiological and morphological traits of the fermentative acetate oxidizer Thermacetogenium phaeum.},
author = {Oehler D, Poehlein A, Leimbach A, Muller N, Daniel R, Gottschalk G, Schink B.},
journal = {BMC Genomics},
year = {2012},
doi = {10.1186/1471-2164-13-723},
pmid = {23259483}
}
@article{lin105552,
title = {Characterization of [4Fe-4S] cluster vibrations and structure in nitrogenase Fe protein at three oxidation levels via combined NRVS, EXAFS, and DFT analyses.},
author = {Mitra D, George SJ, Guo Y, Kamali S, Keable S, Peters JW, Pelmenschikov V, Case DA, Cramer SP.},
journal = {J Am Chem Soc},
year = {2013},
doi = {10.1021/ja307027n},
pmid = {23282058}
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@article{lin104601,
title = {A reversible electron-bifurcating ferredoxin- and NAD-dependent [FeFe]-hydrogenase (HydABC) in Moorella thermoacetica.},
author = {Wang S, Huang H, Kahnt J, Thauer RK.},
journal = {J Bacteriol},
year = {2013},
doi = {10.1128/jb.02158-12},
pmid = {23316038}
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@article{lin104767,
title = {Mechanistic investigation of ultrasonic enhancement of glycerol bioconversion by immobilized Clostridium pasteurianum on silica support.},
author = {Khanna S, Goyal A, Moholkar VS.},
journal = {Biotechnol Bioeng},
year = {2013},
doi = {10.1002/bit.24839},
pmid = {23322632}
}
@article{lin104989,
title = {Expanding the repertoire of gene tools for precise manipulation of the Clostridium difficile genome: allelic exchange using pyrE alleles.},
author = {Ng YK, Ehsaan M, Philip S, Collery MM, Janoir C, Collignon A, Cartman ST, Minton NP.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0056051},
pmid = {23405251}
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@article{lin370119,
title = {Gut microbiota in children with type 1 diabetes differs from that in healthy children: a case-control study.},
author = {Murri M, Leiva I, Gomez-Zumaquero JM, Tinahones FJ, Cardona F, Soriguer F, Queipo-Ortuno MI.},
journal = {BMC Med},
year = {2013},
doi = {10.1186/1741-7015-11-46},
pmid = {23433344}
}
@article{lin104589,
title = {Isolation and Characterization of a Bacteriocin-Like Substance Produced by Geobacillus toebii Strain HBB-247.},
author = {Basbulbul Ozdemir G, Biyik HH.},
journal = {Indian J Microbiol},
year = {2012},
doi = {10.1007/s12088-011-0227-x},
pmid = {23448995}
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@article{lin7902,
title = {Draft Genome Sequence of Type Strain Clostridium pasteurianum DSM 525 (ATCC 6013), a Promising Producer of Chemicals and Fuels.},
author = {Rappert S, Song L, Sabra W, Wang W, Zeng AP},
journal = {Genome Announc},
year = {2013},
doi = {10.1128/genomeA.00232-12},
pmid = {23469350}
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@article{lin105300,
title = {An electron-bifurcating caffeyl-CoA reductase.},
author = {Bertsch J, Parthasarathy A, Parthasarathy A, Buckel W, Muller V.},
journal = {J Biol Chem},
year = {2013},
doi = {10.1074/jbc.m112.444919},
pmid = {23479729}
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@article{lin105378,
title = {Biomimetic synthesis of selenium nanospheres by bacterial strain JS-11 and its role as a biosensor for nanotoxicity assessment: a novel se-bioassay.},
author = {Dwivedi S, Alkhedhairy AA, Ahamed M, Musarrat J.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0057404},
pmid = {23483909}
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@article{lin7901,
title = {Development of an electrotransformation protocol for genetic manipulation of Clostridium pasteurianum.},
author = {Pyne ME, Moo-Young M, Chung DA, Chou CP},
journal = {Biotechnol Biofuels},
year = {2013},
doi = {10.1186/1754-6834-6-50},
pmid = {23570573}
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@article{lin104800,
title = {Phylogeny of 16S rRNA and nifH genes and regulation of nitrogenase activity by oxygen and ammonium in the genus Paenibacillus.},
author = {Xie JB, Bai LQ, Wang LY, Chen SF.},
journal = {Mikrobiologiia},
year = {2012},
doi = {10.1134/s0026261712060173},
pmid = {23610927}
}
@article{lin370118,
title = {Gut microbiota composition in male rat models under different nutritional status and physical activity and its association with serum leptin and ghrelin levels.},
author = {Queipo-Ortuno MI, Seoane LM, Murri M, Pardo M, Gomez-Zumaquero JM, Cardona F, Casanueva F, Tinahones FJ.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0065465},
pmid = {23724144}
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@article{lin105117,
title = {Quantification of endospore-forming firmicutes by quantitative PCR with the functional gene spo0A.},
author = {Bueche M, Wunderlin T, Roussel-Delif L, Junier T, Sauvain L, Jeanneret N, Junier P.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.01376-13},
pmid = {23811505}
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@article{lin105064,
title = {Evaluating peroxiredoxin sensitivity toward inactivation by peroxide substrates.},
author = {Nelson KJ, Parsonage D, Karplus PA, Poole LB.},
journal = {Methods Enzymol},
year = {2013},
doi = {10.1016/b978-0-12-405882-8.00002-7},
pmid = {23830624}
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@article{lin104769,
title = {Effect of fermentation parameters on bio-alcohols production from glycerol using immobilized Clostridium pasteurianum: an optimization study.},
author = {Khanna S, Goyal A, Moholkar VS.},
journal = {Prep Biochem Biotechnol},
year = {2013},
doi = {10.1080/10826068.2013.805625},
pmid = {23876141}
}
@article{lin104618,
title = {NADP-specific electron-bifurcating [FeFe]-hydrogenase in a functional complex with formate dehydrogenase in Clostridium autoethanogenum grown on CO.},
author = {Wang S, Huang H, Kahnt J, Mueller AP, Kopke M, Thauer RK.},
journal = {J Bacteriol},
year = {2013},
doi = {10.1128/jb.00678-13},
pmid = {23893107}
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@article{lin105320,
title = {Molecular hydrogen is involved in phytohormone signaling and stress responses in plants.},
author = {Zeng J, Zhang M, Sun X.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0071038},
pmid = {23951075}
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@article{lin104775,
title = {Molecular dynamics study of the proposed proton transport pathways in [FeFe]-hydrogenase.},
author = {Ginovska-Pangovska B, Ho MH, Linehan JC, Cheng Y, Dupuis M, Raugei S, Shaw WJ.},
journal = {Biochim Biophys Acta},
year = {2014},
doi = {10.1016/j.bbabio.2013.08.004},
pmid = {23981729}
}
@article{lin105359,
title = {Flavodoxin cofactor binding induces structural changes that are required for protein-protein interactions with NADP(+) oxidoreductase and pyruvate formate-lyase activating enzyme.},
author = {Crain AV, Broderick JB.},
journal = {Biochim Biophys Acta},
year = {2013},
doi = {10.1016/j.bbapap.2013.08.014},
pmid = {24016774}
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@article{lin105373,
title = {Multiple amino acid sequence alignment nitrogenase component 1: insights into phylogenetics and structure-function relationships.},
author = {Howard JB, Kechris KJ, Rees DC, Glazer AN.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0072751},
pmid = {24019874}
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@article{lin105348,
title = {Bioconversion of glycerol for bioethanol production using isolated Escherichia coli ss1.},
author = {Suhaimi SN, Phang LY, Maeda T, Abd-Aziz S, Wakisaka M, Shirai Y, Hassan MA.},
journal = {Braz J Microbiol},
year = {2012},
doi = {10.1590/s1517-83822012000200011},
pmid = {24031858}
}
@article{lin105314,
title = {The ferredoxin:NAD+ oxidoreductase (Rnf) from the acetogen Acetobacterium woodii requires Na+ and is reversibly coupled to the membrane potential.},
author = {Hess V, Schuchmann K, Muller V.},
journal = {J Biol Chem},
year = {2013},
doi = {10.1074/jbc.m113.510255},
pmid = {24045950}
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@article{lin105103,
title = {Growth Limiting pH, Water Activity, and Temperature for Neurotoxigenic Strains of Clostridium butyricum.},
author = {Ghoddusi HB, Sherburn RE, Aboaba OO.},
journal = {ISRN Microbiol},
year = {2013},
doi = {10.1155/2013/731430},
pmid = {24195005}
}
@article{lin105074,
title = {A molecular pathway for the egress of ammonia produced by nitrogenase.},
author = {Dance I.},
journal = {Sci Rep},
year = {2013},
doi = {10.1038/srep03237},
pmid = {24241241}
}
@article{lin105408,
title = {The uptake hydrogenase in the unicellular diazotrophic cyanobacterium Cyanothece sp. strain PCC 7822 protects nitrogenase from oxygen toxicity.},
author = {Zhang X, Sherman DM, Sherman LA.},
journal = {J Bacteriol},
year = {2014},
doi = {10.1128/jb.01248-13},
pmid = {24317398}
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@article{lin105147,
title = {Methods to identify the NMR resonances of the ¹³C-dimethyl N-terminal amine on reductively methylated proteins.},
author = {Roberson KJ, Brady PN, Sweeney MM, Macnaughtan MA.},
journal = {J Vis Exp},
year = {2013},
doi = {10.3791/50875},
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title = {Scale-up of anaerobic 1,3-propanediol production by Clostridium butyricum DSP1 from crude glycerol.},
author = {Szymanowska-Powalowska D, Bialas W.},
journal = {BMC Microbiol},
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title = {Improved n-butanol production by a non-acetone producing Clostridium pasteurianum DSMZ 525 in mixed substrate fermentation.},
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title = {Homeoviscous response of Clostridium pasteurianum to butanol toxicity during glycerol fermentation.},
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title = {Draft Genome Sequence of Clostridium pasteurianum NRRL B-598, a Potential Butanol or Hydrogen Producer.},
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journal = {Genome Announc},
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@article{lin105172,
title = {Reduction of selenite to red elemental selenium by Rhodopseudomonas palustris strain N.},
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title = {Borane-protected cyanides as surrogates of H-bonded cyanides in [FeFe]-hydrogenase active site models.},
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title = {Biohydrogenation of C20 polyunsaturated fatty acids by anaerobic bacteria.},
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title = {Evidence for a hexaheteromeric methylenetetrahydrofolate reductase in Moorella thermoacetica.},
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journal = {J Bacteriol},
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title = {Impurities of crude glycerol and their effect on metabolite production.},
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journal = {Ann Microbiol},
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title = {Improved Draft Genome Sequence of Clostridium pasteurianum Strain ATCC 6013 (DSM 525) Using a Hybrid Next-Generation Sequencing Approach.},
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journal = {Genome Announc},
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title = {The post-translational modification of the Clostridium difficile flagellin affects motility, cell surface properties and virulence.},
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title = {Hydrogen formation and its regulation in Ruminococcus albus: involvement of an electron-bifurcating [FeFe]-hydrogenase, of a non-electron-bifurcating [FeFe]-hydrogenase, and of a putative hydrogen-sensing [FeFe]-hydrogenase.},
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journal = {J Bacteriol},
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title = {Metabolic engineering of a glycerol-oxidative pathway in Lactobacillus panis PM1 for utilization of bioethanol thin stillage: potential to produce platform chemicals from glycerol.},
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journal = {Appl Environ Microbiol},
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title = {Goniometer-based femtosecond crystallography with X-ray free electron lasers.},
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journal = {Proc Natl Acad Sci U S A},
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title = {Electricity-driven metabolic shift through direct electron uptake by electroactive heterotroph Clostridium pasteurianum.},
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journal = {Sci Rep},
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title = {Reduced catabolic protein expression in Clostridium butyricum DSM 10702 correlate with reduced 1,3-propanediol synthesis at high glycerol loading.},
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journal = {AMB Express},
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title = {Expansion of the genetic toolkit for metabolic engineering of Clostridium pasteurianum: chromosomal gene disruption of the endogenous CpaAI restriction enzyme.},
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title = {Substrate-induced radical formation in 4-hydroxybutyryl coenzyme A dehydratase from Clostridium aminobutyricum.},
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title = {[FeFe]-hydrogenase abundance and diversity along a vertical redox gradient in Great Salt Lake, USA.},
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title = {Genome-wide analysis of alternative splicing in Volvox carteri.},
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journal = {BMC Genomics},
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title = {Complete Genome Sequence of the Nitrogen-Fixing and Solvent-Producing Clostridium pasteurianum DSM 525.},
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journal = {Genome Announc},
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title = {Closed Genome Sequence of Clostridium pasteurianum ATCC 6013.},
author = {Rotta C, Poehlein A, Schwarz K, McClure P, Daniel R, Minton NP},
journal = {Genome Announc},
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title = {Substrate pathways in the nitrogenase MoFe protein by experimental identification of small molecule binding sites.},
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journal = {Biochemistry},
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title = {Genome-wide transcriptional analysis suggests hydrogenase- and nitrogenase-mediated hydrogen production in Clostridium butyricum CWBI 1009.},
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title = {Heterotrimeric NADH-oxidizing methylenetetrahydrofolate reductase from the acetogenic bacterium Acetobacterium woodii.},
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title = {Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals.},
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journal = {Elife},
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title = {Spectroscopic and redox studies of valence-delocalized [Fe2S2](+) centers in thioredoxin-like ferredoxins.},
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journal = {PLoS One},
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title = {A universal mariner transposon system for forward genetic studies in the genus Clostridium.},
author = {Zhang Y, Grosse-Honebrink A, Minton NP.},
journal = {PLoS One},
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title = {Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase.},
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journal = {Appl Environ Microbiol},
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@article{lin105239,
title = {Characterization of Hydrogen Metabolism in the Multicellular Green Alga Volvox carteri.},
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title = {Expression of heterologous sigma factors enables functional screening of metagenomic and heterologous genomic libraries.},
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@article{lin105202,
title = {Energy Conservation Model Based on Genomic and Experimental Analyses of a Carbon Monoxide-Utilizing, Butyrate-Forming Acetogen, Eubacterium limosum KIST612.},
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journal = {Appl Environ Microbiol},
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doi = {10.1128/aem.00675-15},
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@article{lin105270,
title = {[Fe-Fe]-hydrogenase Reactivated by Residue Mutations as Bridging Carbonyl Rearranges: A QM/MM Study.},
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title = {Diiron azadithiolates as models for the [FeFe]-hydrogenase active site and paradigm for the role of the second coordination sphere.},
author = {Rauchfuss TB.},
journal = {Acc Chem Res},
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@article{lin105007,
title = {Characterization of D-xylonate dehydratase YjhG from Escherichia coli.},
author = {Jiang Y, Liu W, Cheng T, Cao Y, Zhang R, Xian M.},
journal = {Bioengineered},
year = {2015},
doi = {10.1080/21655979.2015.1040208},
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@article{lin105224,
title = {Spectroscopic Investigations of [FeFe] Hydrogenase Maturated with [(57)Fe2(adt)(CN)2(CO)4](2-).},
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journal = {J Am Chem Soc},
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@article{lin105333,
title = {Non-cyanobacterial diazotrophs mediate dinitrogen fixation in biological soil crusts during early crust formation.},
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title = {Insights into Flavin-based Electron Bifurcation via the NADH-dependent Reduced Ferredoxin:NADP Oxidoreductase Structure.},
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title = {Energy Conservation Associated with Ethanol Formation from H2 and CO2 in Clostridium autoethanogenum Involving Electron Bifurcation.},
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journal = {J Bacteriol},
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doi = {10.1128/jb.00399-15},
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title = {Apertures in the Clostridium sporogenes spore coat and exosporium align to facilitate emergence of the vegetative cell.},
author = {Brunt J, Cross KL, Peck MW.},
journal = {Food Microbiol},
year = {2015},
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@article{lin104742,
title = {Impact of butyric acid on butanol formation by Clostridium pasteurianum.},
author = {Regestein L, Doerr EW, Staaden A, Rehmann L.},
journal = {Bioresour Technol},
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doi = {10.1016/j.biortech.2015.07.085},
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@article{lin104590,
title = {Tequila vinasses acidogenesis in a UASB reactor with Clostridium predominance.},
author = {Marino-Marmolejo EN, Corbala-Robles L, Cortez-Aguilar RC, Contreras-Ramos SM, Bolanos-Rosales RE, Davila-Vazquez G.},
journal = {Springerplus},
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title = {Lyophilization protects [FeFe]-hydrogenases against O2-induced H-cluster degradation.},
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@article{lin105377,
title = {Asp1 from Schizosaccharomyces pombe binds a [2Fe-2S](2+) cluster which inhibits inositol pyrophosphate 1-phosphatase activity.},
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journal = {Biochemistry},
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title = {Bio-butanol production from glycerol with Clostridium pasteurianum CH4: the effects of butyrate addition and in situ butanol removal via membrane distillation.},
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journal = {Biotechnol Biofuels},
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title = {Directed Evolution and Resolution Mechanism of 1, 3-Propanediol Oxidoreductase from Klebsiella pneumoniae toward Higher Activity by Error-Prone PCR and Bioinformatics.},
author = {Jiang W, Zhuang Y, Wang S, Fang B.},
journal = {PLoS One},
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title = {Structure and Function of Photosystem I-[FeFe] Hydrogenase Protein Fusions: An All-Atom Molecular Dynamics Study.},
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journal = {J Phys Chem B},
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title = {Whole-genome sequence of an evolved Clostridium pasteurianum strain reveals Spo0A deficiency responsible for increased butanol production and superior growth.},
author = {Sandoval NR, Venkataramanan KP, Groth TS, Papoutsakis ET},
journal = {Biotechnol Biofuels},
year = {2015},
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@article{lin105305,
title = {Biocatalysis for the application of CO2 as a chemical feedstock.},
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journal = {Beilstein J Org Chem},
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title = {Sugar uptake by the solventogenic clostridia.},
author = {Mitchell WJ.},
journal = {World J Microbiol Biotechnol},
year = {2016},
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@article{lin104579,
title = {Dam and Dcm methylations prevent gene transfer into Clostridium pasteurianum NRRL B-598: development of methods for electrotransformation, conjugation, and sonoporation.},
author = {Kolek J, Sedlar K, Provaznik I, Patakova P.},
journal = {Biotechnol Biofuels},
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@article{lin105128,
title = {Occurrence of ferredoxin:NAD(+) oxidoreductase activity and its ion specificity in several Gram-positive and Gram-negative bacteria.},
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title = {Redox Control of the Human Iron-Sulfur Repair Protein MitoNEET Activity via Its Iron-Sulfur Cluster.},
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title = {Optimization of fermentation condition favoring butanol production from glycerol by Clostridium pasteurianum DSM 525.},
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journal = {Bioresour Technol},
year = {2016},
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}
@article{lin105288,
title = {The Involvement of hybrid cluster protein 4, HCP4, in Anaerobic Metabolism in Chlamydomonas reinhardtii.},
author = {Olson AC, Carter CJ.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0149816},
pmid = {26930496}
}
@article{lin104738,
title = {The role of 1,3-propanediol production in fermentation of glycerol by Clostridium pasteurianum.},
author = {Johnson EE, Rehmann L.},
journal = {Bioresour Technol},
year = {2016},
doi = {10.1016/j.biortech.2016.02.088},
pmid = {26946434}
}
@article{lin104602,
title = {Reduction of Flavodoxin by Electron Bifurcation and Sodium Ion-dependent Reoxidation by NAD+ Catalyzed by Ferredoxin-NAD+ Reductase (Rnf).},
author = {Chowdhury NP, Klomann K, Seubert A, Buckel W.},
journal = {J Biol Chem},
year = {2016},
doi = {10.1074/jbc.m116.726299},
pmid = {27048649}
}
@article{lin105401,
title = {Involvement of the Eukaryote-Like Kinase-Phosphatase System and a Protein That Interacts with Penicillin-Binding Protein 5 in Emergence of Cephalosporin Resistance in Cephalosporin-Sensitive Class A Penicillin-Binding Protein Mutants in Enterococcus faecium.},
author = {Desbonnet C, Tait-Kamradt A, Garcia-Solache M, Dunman P, Coleman J, Arthur M, Rice LB.},
journal = {mBio},
year = {2016},
doi = {10.1128/mbio.02188-15},
pmid = {27048803}
}
@article{lin105278,
title = {Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific.},
author = {Cucio C, Engelen AH, Costa R, Muyzer G.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.00440},
pmid = {27065991}
}
@article{lin104631,
title = {Harnessing heterologous and endogenous CRISPR-Cas machineries for efficient markerless genome editing in Clostridium.},
author = {Pyne ME, Bruder MR, Moo-Young M, Chung DA, Chou CP.},
journal = {Sci Rep},
year = {2016},
doi = {10.1038/srep25666},
pmid = {27157668}
}
@article{lin7892,
title = {Influence of nutritional and operational parameters on the production of butanol or 1,3-propanediol from glycerol by a mutant Clostridium pasteurianum.},
author = {Gallardo R, Alves M, Rodrigues LR},
journal = {N Biotechnol},
year = {2016},
doi = {10.1016/j.nbt.2016.03.002},
pmid = {27167856}
}
@article{lin104762,
title = {Single-Amino Acid Modifications Reveal Additional Controls on the Proton Pathway of [FeFe]-Hydrogenase.},
author = {Cornish AJ, Ginovska B, Thelen A, da Silva JC, Soares TA, Raugei S, Dupuis M, Shaw WJ, Hegg EL.},
journal = {Biochemistry},
year = {2016},
doi = {10.1021/acs.biochem.5b01044},
pmid = {27186945}
}
@article{lin105548,
title = {Production of a functional cell wall-anchored minicellulosome by recombinant Clostridium acetobutylicum ATCC 824.},
author = {Willson BJ, Kovacs K, Wilding-Steele T, Markus R, Winzer K, Minton NP.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0526-x},
pmid = {27222664}
}
@article{lin105093,
title = {A Redox Active [2Fe-2S] Cluster on the Hydrogenase Maturase HydF.},
author = {Shepard EM, Byer AS, Betz JN, Peters JW, Broderick JB.},
journal = {Biochemistry},
year = {2016},
doi = {10.1021/acs.biochem.6b00528},
pmid = {27232385}
}
@article{lin105052,
title = {A roadmap for gene system development in Clostridium.},
author = {Minton NP, Ehsaan M, Humphreys CM, Little GT, Baker J, Henstra AM, Liew F, Kelly ML, Sheng L, Schwarz K, Zhang Y.},
journal = {Anaerobe},
year = {2016},
doi = {10.1016/j.anaerobe.2016.05.011},
pmid = {27234263}
}
@article{lin104584,
title = {Fermentation of mixed substrates by Clostridium pasteurianum and its physiological, metabolic and proteomic characterizations.},
author = {Sabra W, Wang W, Surandram S, Groeger C, Zeng AP.},
journal = {Microb Cell Fact},
year = {2016},
doi = {10.1186/s12934-016-0497-4},
pmid = {27329179}
}
@article{lin104591,
title = {Disruption of the Reductive 1,3-Propanediol Pathway Triggers Production of 1,2-Propanediol for Sustained Glycerol Fermentation by Clostridium pasteurianum.},
author = {Pyne ME, Sokolenko S, Liu X, Srirangan K, Bruder MR, Aucoin MG, Moo-Young M, Chung DA, Chou CP.},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/aem.01354-16},
pmid = {27342556}
}
@article{lin105144,
title = {Characterization of the spore surface and exosporium proteins of Clostridium sporogenes; implications for Clostridium botulinum group I strains.},
author = {Janganan TK, Mullin N, Tzokov SB, Stringer S, Fagan RP, Hobbs JK, Moir A, Bullough PA.},
journal = {Food Microbiol},
year = {2016},
doi = {10.1016/j.fm.2016.06.003},
pmid = {27375261}
}
@article{lin105431,
title = {Focal Targeting of the Bacterial Envelope by Antimicrobial Peptides.},
author = {Rashid R, Veleba M, Kline KA.},
journal = {Front Cell Dev Biol},
year = {2016},
doi = {10.3389/fcell.2016.00055},
pmid = {27376064}
}
@article{lin370115,
title = {Antimicrobial and anti-Quorum Sensing activities of selected medicinal plants of Ethiopia: Implication for development of potent antimicrobial agents.},
author = {Bacha K, Tariku Y, Gebreyesus F, Zerihun S, Mohammed A, Weiland-Brauer N, Schmitz RA, Mulat M.},
journal = {BMC Microbiol},
year = {2016},
doi = {10.1186/s12866-016-0765-9},
pmid = {27400878}
}
@article{lin105252,
title = {Germinants and Their Receptors in Clostridia.},
author = {Bhattacharjee D, McAllister KN, Sorg JA.},
journal = {J Bacteriol},
year = {2016},
doi = {10.1128/jb.00405-16},
pmid = {27432831}
}
@article{lin104827,
title = {Characterization of [FeFe] Hydrogenase O2 Sensitivity Using a New, Physiological Approach.},
author = {Koo J, Shiigi S, Rohovie M, Mehta K, Swartz JR.},
journal = {J Biol Chem},
year = {2016},
doi = {10.1074/jbc.m116.737122},
pmid = {27435671}
}
@article{lin105238,
title = {Investigation of availability of a high throughput screening method for predicting butanol solvent -producing ability of Clostridium beijerinckii.},
author = {Su H, Zhu J, Liu G, Tan F.},
journal = {BMC Microbiol},
year = {2016},
doi = {10.1186/s12866-016-0776-6},
pmid = {27448996}
}
@article{lin7891,
title = {Extending CRISPR-Cas9 Technology from Genome Editing to Transcriptional Engineering in the Genus Clostridium.},
author = {Bruder MR, Pyne ME, Moo-Young M, Chung DA, Chou CP},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/AEM.02128-16},
pmid = {27496775}
}
@article{lin104607,
title = {Expanding the molecular toolkit for the homoacetogen Clostridium ljungdahlii.},
author = {Molitor B, Kirchner K, Henrich AW, Schmitz S, Rosenbaum MA.},
journal = {Sci Rep},
year = {2016},
doi = {10.1038/srep31518},
pmid = {27527841}
}
@article{lin105237,
title = {Ruminal Fermentation of Anti-Methanogenic Nitrate- and Nitro-Containing Forages In Vitro.},
author = {Anderson RC, Ripley LH, Bowman JG, Callaway TR, Genovese KJ, Beier RC, Harvey RB, Nisbet DJ.},
journal = {Front Vet Sci},
year = {2016},
doi = {10.3389/fvets.2016.00062},
pmid = {27563646}
}
@article{lin105453,
title = {A Novel F420-dependent Thioredoxin Reductase Gated by Low Potential FAD: A TOOL FOR REDOX REGULATION IN AN ANAEROBE.},
author = {Susanti D, Loganathan U, Mukhopadhyay B.},
journal = {J Biol Chem},
year = {2016},
doi = {10.1074/jbc.m116.750208},
pmid = {27590343}
}
@article{lin105167,
title = {Reduction of selenite to Se(0) nanoparticles by filamentous bacterium Streptomyces sp. ES2-5 isolated from a selenium mining soil.},
author = {Tan Y, Yao R, Wang R, Wang D, Wang G, Zheng S.},
journal = {Microb Cell Fact},
year = {2016},
doi = {10.1186/s12934-016-0554-z},
pmid = {27630128}
}
@article{lin104582,
title = {Genome-directed analysis of prophage excision, host defence systems, and central fermentative metabolism in Clostridium pasteurianum.},
author = {Pyne ME, Liu X, Moo-Young M, Chung DA, Chou CP.},
journal = {Sci Rep},
year = {2016},
doi = {10.1038/srep26228},
pmid = {27641836}
}
@article{lin105085,
title = {Influence of pH Regulation Mode in Glucose Fermentation on Product Selection and Process Stability.},
author = {Mohd-Zaki Z, Bastidas-Oyanedel JR, Lu Y, Hoelzle R, Pratt S, Slater FR, Batstone DJ.},
journal = {Microorganisms},
year = {2016},
doi = {10.3390/microorganisms4010002},
pmid = {27681895}
}
@article{lin105066,
title = {Toward glycerol biorefinery: metabolic engineering for the production of biofuels and chemicals from glycerol.},
author = {Chen Z, Liu D.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0625-8},
pmid = {27729943}
}
@article{lin104752,
title = {Electrochemical Investigations of the Mechanism of Assembly of the Active-Site H-Cluster of [FeFe]-Hydrogenases.},
author = {Megarity CF, Esselborn J, Hexter SV, Wittkamp F, Apfel UP, Happe T, Armstrong FA.},
journal = {J Am Chem Soc},
year = {2016},
doi = {10.1021/jacs.6b09366},
pmid = {27776209}
}
@article{lin104580,
title = {Comprehensive investigations of biobutanol production by a non-acetone and 1,3-propanediol generating Clostridium strain from glycerol and polysaccharides.},
author = {Xin F, Wang C, Dong W, Zhang W, Wu H, Ma J, Jiang M.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0641-8},
pmid = {27777622}
}
@article{lin104604,
title = {Effective isopropanol-butanol (IB) fermentation with high butanol content using a newly isolated Clostridium sp. A1424.},
author = {Youn SH, Lee KM, Kim KY, Lee SM, Woo HM, Um Y.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0650-7},
pmid = {27800016}
}
@article{lin370110,
title = {An Alteration in the Cecal Microbiota Composition by Feeding of 1-Kestose Results in a Marked Increase in the Cecal Butyrate Content in Rats.},
author = {Tochio T, Kitaura Y, Nakamura S, Sugawa C, Takahashi M, Endo A, Shimomura Y.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0166850},
pmid = {27861621}
}
@article{lin104600,
title = {Redox dependent metabolic shift in Clostridium autoethanogenum by extracellular electron supply.},
author = {Kracke F, Virdis B, Bernhardt PV, Rabaey K, Kromer JO.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0663-2},
pmid = {27882076}
}
@article{lin104649,
title = {Complex N acquisition by soil diazotrophs: how the ability to release exoenzymes affects N fixation by terrestrial free-living diazotrophs.},
author = {Norman JS, Friesen ML.},
journal = {ISME J},
year = {2017},
doi = {10.1038/ismej.2016.127},
pmid = {27898052}
}
@article{lin104748,
title = {High-Throughput Screening of Catalytic H2 Production.},
author = {Koo J, Schnabel T, Liong S, Evitt NH, Swartz JR.},
journal = {Angew Chem Int Ed Engl},
year = {2017},
doi = {10.1002/anie.201610260},
pmid = {27976484}
}
@article{lin104964,
title = {Mechanism of O2 diffusion and reduction in FeFe hydrogenases.},
author = {Kubas A, Orain C, De Sancho D, Saujet L, Sensi M, Gauquelin C, Meynial-Salles I, Soucaille P, Bottin H, Baffert C, Fourmond V, Best RB, Blumberger J, Leger C.},
journal = {Nat Chem},
year = {2017},
doi = {10.1038/nchem.2592},
pmid = {27995927}
}
@article{lin104914,
title = {Fermentation of glycerol by Anaerobium acetethylicum and its potential use in biofuel production.},
author = {Patil Y, Junghare M, Muller N.},
journal = {Microb Biotechnol},
year = {2017},
doi = {10.1111/1751-7915.12484},
pmid = {28004884}
}
@article{lin105363,
title = {Spectroscopic Studies of the EutT Adenosyltransferase from Salmonella enterica: Evidence of a Tetrahedrally Coordinated Divalent Transition Metal Cofactor with Cysteine Ligation.},
author = {Pallares IG, Moore TC, Escalante-Semerena JC, Brunold TC.},
journal = {Biochemistry},
year = {2017},
doi = {10.1021/acs.biochem.6b00750},
pmid = {28045498}
}
@article{lin104574,
title = {Towards improved butanol production through targeted genetic modification of Clostridium pasteurianum.},
author = {Schwarz KM, Grosse-Honebrink A, Derecka K, Rotta C, Zhang Y, Minton NP.},
journal = {Metab Eng},
year = {2017},
doi = {10.1016/j.ymben.2017.01.009},
pmid = {28119139}
}
@article{lin104597,
title = {Compound-Specific Stable Isotope Analysis: Implications in Hexachlorocyclohexane in-vitro and Field Assessment.},
author = {Kohli P, Richnow HH, Lal R.},
journal = {Indian J Microbiol},
year = {2017},
doi = {10.1007/s12088-016-0630-4},
pmid = {28148976}
}
@article{lin104920,
title = {Inoculum composition determines microbial community and function in an anaerobic sequential batch reactor.},
author = {Perrotta AR, Kumaraswamy R, Bastidas-Oyanedel JR, Alm EJ, Rodriguez J.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0171369},
pmid = {28196102}
}
@article{lin104613,
title = {Microbial solvent formation revisited by comparative genome analysis.},
author = {Poehlein A, Solano JDM, Flitsch SK, Krabben P, Winzer K, Reid SJ, Jones DT, Green E, Minton NP, Daniel R, Durre P.},
journal = {Biotechnol Biofuels},
year = {2017},
doi = {10.1186/s13068-017-0742-z},
pmid = {28286553}
}
@article{lin104576,
title = {Cooperative growth of Geobacter sulfurreducens and Clostridium pasteurianum with subsequent metabolic shift in glycerol fermentation.},
author = {Moscoviz R, de Fouchecour F, Santa-Catalina G, Bernet N, Trably E.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/srep44334},
pmid = {28287150}
}
@article{lin105454,
title = {Iron reduction and gley formation by nitrogen-fixing clostridia.},
author = {Ottow JC.},
journal = {Oecologia},
year = {1971},
doi = {10.1007/bf00345718},
pmid = {28310760}
}
@article{lin104746,
title = {Detection of Brucellosis in Sika Deer ( Cervus nippon ) through Loop-mediated Isothermal Amplification (LAMP).},
author = {Liu Q, Wei J, Sun Q, Wang B, Wang Y, Hu Y, Wu W.},
journal = {J Wildl Dis},
year = {2017},
doi = {10.7589/2016-05-105},
pmid = {28318383}
}
@article{lin104874,
title = {Frequency and potential dependence of reversible electrocatalytic hydrogen interconversion by [FeFe]-hydrogenases.},
author = {Pandey K, Islam ST, Happe T, Armstrong FA.},
journal = {Proc Natl Acad Sci U S A},
year = {2017},
doi = {10.1073/pnas.1619961114},
pmid = {28348243}
}
@article{lin105262,
title = {n-Butanol derived from biochemical and chemical routes: A review.},
author = {Ndaba B, Chiyanzu I, Marx S.},
journal = {Biotechnol Rep (Amst)},
year = {2015},
doi = {10.1016/j.btre.2015.08.001},
pmid = {28352567}
}
@article{lin104632,
title = {Metabolic and proteomic analyses of product selectivity and redox regulation in Clostridium pasteurianum grown on glycerol under varied iron availability.},
author = {Groeger C, Wang W, Sabra W, Utesch T, Zeng AP.},
journal = {Microb Cell Fact},
year = {2017},
doi = {10.1186/s12934-017-0678-9},
pmid = {28424096}
}
@article{lin104733,
title = {Metabolic flux network analysis of hydrogen production from crude glycerol by Clostridium pasteurianum.},
author = {Sarma S, Anand A, Dubey VK, Moholkar VS.},
journal = {Bioresour Technol},
year = {2017},
doi = {10.1016/j.biortech.2017.03.168},
pmid = {28456454}
}
@article{lin105129,
title = {Direct hydrogen production from dilute-acid pretreated sugarcane bagasse hydrolysate using the newly isolated Thermoanaerobacterium thermosaccharolyticum MJ1.},
author = {Hu BB, Zhu MJ.},
journal = {Microb Cell Fact},
year = {2017},
doi = {10.1186/s12934-017-0692-y},
pmid = {28468624}
}
@article{lin104725,
title = {Efficient dark fermentative hydrogen production from enzyme hydrolyzed rice straw by Clostridium pasteurianum (MTCC116).},
author = {Srivastava N, Srivastava M, Kushwaha D, Gupta VK, Manikanta A, Ramteke PW, Mishra PK.},
journal = {Bioresour Technol},
year = {2017},
doi = {10.1016/j.biortech.2017.04.077},
pmid = {28477517}
}
@article{lin105221,
title = {Substrates and oxygen dependent citric acid production by Yarrowia lipolytica: insights through transcriptome and fluxome analyses.},
author = {Sabra W, Bommareddy RR, Maheshwari G, Papanikolaou S, Zeng AP.},
journal = {Microb Cell Fact},
year = {2017},
doi = {10.1186/s12934-017-0690-0},
pmid = {28482902}
}
@article{lin105323,
title = {Heterologous Expression of the Clostridium carboxidivorans CO Dehydrogenase Alone or Together with the Acetyl Coenzyme A Synthase Enables both Reduction of CO2 and Oxidation of CO by Clostridium acetobutylicum.},
author = {Carlson ED, Papoutsakis ET.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.00829-17},
pmid = {28625981}
}
@article{lin105292,
title = {The use of the carbon/nitrogen ratio and specific organic loading rate as tools for improving biohydrogen production in fixed-bed reactors.},
author = {Anzola-Rojas MDP, Goncalves da Fonseca S, Canedo da Silva C, Maia de Oliveira V, Zaiat M.},
journal = {Biotechnol Rep (Amst)},
year = {2015},
doi = {10.1016/j.btre.2014.10.010},
pmid = {28626682}
}
@article{lin104750,
title = {Reduction Potentials of [FeFe]-Hydrogenase Accessory Iron-Sulfur Clusters Provide Insights into the Energetics of Proton Reduction Catalysis.},
author = {Artz JH, Mulder DW, Ratzloff MW, Lubner CE, Zadvornyy OA, LeVan AX, Williams SG, Adams MWW, Jones AK, King PW, Peters JW.},
journal = {J Am Chem Soc},
year = {2017},
doi = {10.1021/jacs.7b02099},
pmid = {28635269}
}
@article{lin104825,
title = {Enhanced n-butanol production by Clostridium beijerinckii MCMB 581 in presence of selected surfactant.},
author = {Singh K, Gedam PS, Raut AN, Dhamole PB, Dhakephalkar PK, Ranade DR.},
journal = {3 Biotech},
year = {2017},
doi = {10.1007/s13205-017-0803-9},
pmid = {28660448}
}
@article{lin104859,
title = {Reversible Protonated Resting State of the Nitrogenase Active Site.},
author = {Morrison CN, Spatzal T, Rees DC.},
journal = {J Am Chem Soc},
year = {2017},
doi = {10.1021/jacs.7b05695},
pmid = {28692802}
}
@article{lin105151,
title = {Electro-fermentation triggering population selection in mixed-culture glycerol fermentation.},
author = {Moscoviz R, Trably E, Bernet N.},
journal = {Microb Biotechnol},
year = {2018},
doi = {10.1111/1751-7915.12747},
pmid = {28695687}
}
@article{lin105268,
title = {Respiratory Pathways Reconstructed by Multi-Omics Analysis in Melioribacter roseus, Residing in a Deep Thermal Aquifer of the West-Siberian Megabasin.},
author = {Gavrilov S, Podosokorskaya O, Alexeev D, Merkel A, Khomyakova M, Muntyan M, Altukhov I, Butenko I, Bonch-Osmolovskaya E, Govorun V, Kublanov I.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.01228},
pmid = {28713355}
}
@article{lin104583,
title = {The Physiological Functions and Structural Determinants of Catalytic Bias in the [FeFe]-Hydrogenases CpI and CpII of Clostridium pasteurianum Strain W5.},
author = {Therien JB, Artz JH, Poudel S, Hamilton TL, Liu Z, Noone SM, Adams MWW, King PW, Bryant DA, Boyd ES, Peters JW.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.01305},
pmid = {28747909}
}
@article{lin104629,
title = {A Case Study into Microbial Genome Assembly Gap Sequences and Finishing Strategies.},
author = {Utturkar SM, Klingeman DM, Hurt RA, Brown SD.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.01272},
pmid = {28769883}
}
@article{lin370112,
title = {Assessment of Antioxidant and Antibacterial Properties on Meat Homogenates of Essential Oils Obtained from Four Thymus Species Achieved from Organic Growth.},
author = {Ballester-Costa C, Sendra E, Fernandez-Lopez J, Perez-Alvarez JA, Viuda-Martos M.},
journal = {Foods},
year = {2017},
doi = {10.3390/foods6080059},
pmid = {28788051}
}
@article{lin104876,
title = {Revealing extracellular electron transfer mediated parasitism: energetic considerations.},
author = {Moscoviz R, Flayac C, Desmond-Le Quemener E, Trably E, Bernet N.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-07593-y},
pmid = {28798305}
}
@article{lin104598,
title = {Syntrophomonas wolfei Uses an NADH-Dependent, Ferredoxin-Independent [FeFe]-Hydrogenase To Reoxidize NADH.},
author = {Losey NA, Mus F, Peters JW, Le HM, McInerney MJ.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.01335-17},
pmid = {28802265}
}
@article{lin105080,
title = {A Reexamination of Thioredoxin Reductase from Thermoplasma acidophilum, a Thermoacidophilic Euryarchaeon, Identifies It as an NADH-Dependent Enzyme.},
author = {Susanti D, Loganathan U, Compton A, Mukhopadhyay B.},
journal = {ACS Omega},
year = {2017},
doi = {10.1021/acsomega.7b00640},
pmid = {28884159}
}
@article{lin104565,
title = {Improving gene transfer in Clostridium pasteurianum through the isolation of rare hypertransformable variants.},
author = {Grosse-Honebrink A, Schwarz KM, Wang H, Minton NP, Zhang Y.},
journal = {Anaerobe},
year = {2017},
doi = {10.1016/j.anaerobe.2017.09.001},
pmid = {28899647}
}
@article{lin370081,
title = {Biobutanol production from apple pomace: the importance of pretreatment methods on the fermentability of lignocellulosic agro-food wastes.},
author = {Hijosa-Valsero M, Paniagua-Garcia AI, Diez-Antolinez R.},
journal = {Appl Microbiol Biotechnol},
year = {2017},
doi = {10.1007/s00253-017-8522-z},
pmid = {28932978}
}
@article{lin105203,
title = {Cas9 Nickase-Assisted RNA Repression Enables Stable and Efficient Manipulation of Essential Metabolic Genes in Clostridium cellulolyticum.},
author = {Xu T, Li Y, He Z, Van Nostrand JD, Zhou J.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.01744},
pmid = {28936208}
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@article{lin105065,
title = {Structural Characterization of Clostridium sordellii Spores of Diverse Human, Animal, and Environmental Origin and Comparison to Clostridium difficile Spores.},
author = {Rabi R, Turnbull L, Whitchurch CB, Awad M, Lyras D.},
journal = {mSphere},
year = {2017},
doi = {10.1128/msphere.00343-17},
pmid = {28989969}
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@article{lin104949,
title = {Biochemical Function, Molecular Structure and Evolution of an Atypical Thioredoxin Reductase from Desulfovibrio vulgaris.},
author = {Valette O, Tran TTT, Cavazza C, Caudeville E, Brasseur G, Dolla A, Talla E, Pieulle L.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.01855},
pmid = {29033913}
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@article{lin105030,
title = {Reaction Coordinate Leading to H2 Production in [FeFe]-Hydrogenase Identified by Nuclear Resonance Vibrational Spectroscopy and Density Functional Theory.},
author = {Pelmenschikov V, Birrell JA, Pham CC, Mishra N, Wang H, Sommer C, Reijerse E, Richers CP, Tamasaku K, Yoda Y, Rauchfuss TB, Lubitz W, Cramer SP.},
journal = {J Am Chem Soc},
year = {2017},
doi = {10.1021/jacs.7b09751},
pmid = {29054130}
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@article{lin104739,
title = {Chalcogenide substitution in the [2Fe] cluster of [FeFe]-hydrogenases conserves high enzymatic activity.},
author = {Kertess L, Wittkamp F, Sommer C, Esselborn J, Rudiger O, Reijerse EJ, Hofmann E, Lubitz W, Winkler M, Happe T, Apfel UP.},
journal = {Dalton Trans},
year = {2017},
doi = {10.1039/c7dt03785f},
pmid = {29177350}
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@article{lin105189,
title = {Phylogenetic Profiling of Mitochondrial Proteins and Integration Analysis of Bacterial Transcription Units Suggest Evolution of F1Fo ATP Synthase from Multiple Modules.},
author = {Niu Y, Moghimyfiroozabad S, Safaie S, Yang Y, Jonas EA, Alavian KN.},
journal = {J Mol Evol},
year = {2017},
doi = {10.1007/s00239-017-9819-3},
pmid = {29177973}
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@article{lin105233,
title = {State of the art in eukaryotic nitrogenase engineering.},
author = {Buren S, Rubio LM.},
journal = {FEMS Microbiol Lett},
year = {2018},
doi = {10.1093/femsle/fnx274},
pmid = {29240940}
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@article{lin105190,
title = {Diversity and Functional Analysis of the FeMo-Cofactor Maturase NifB.},
author = {Arragain S, Jimenez-Vicente E, Scandurra AA, Buren S, Rubio LM, Echavarri-Erasun C.},
journal = {Front Plant Sci},
year = {2017},
doi = {10.3389/fpls.2017.01947},
pmid = {29250084}
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@article{lin105045,
title = {Probing Genomic Aspects of the Multi-Host Pathogen Clostridium perfringens Reveals Significant Pangenome Diversity, and a Diverse Array of Virulence Factors.},
author = {Kiu R, Caim S, Alexander S, Pachori P, Hall LJ.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.02485},
pmid = {29312194}
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@article{lin105371,
title = {Nanoparticles in Biological Hydrogen Production: An Overview.},
author = {Patel SKS, Lee JK, Kalia VC.},
journal = {Indian J Microbiol},
year = {2018},
doi = {10.1007/s12088-017-0678-9},
pmid = {29434392}
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@article{lin104641,
title = {Development of a high-throughput assay for rapid screening of butanologenic strains.},
author = {Agu CV, Lai SM, Ujor V, Biswas PK, Jones A, Gopalan V, Ezeji TC.},
journal = {Sci Rep},
year = {2018},
doi = {10.1038/s41598-017-18074-7},
pmid = {29467394}
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@article{lin104823,
title = {Electron Transfer to Nitrogenase in Different Genomic and Metabolic Backgrounds.},
author = {Poudel S, Colman DR, Fixen KR, Ledbetter RN, Zheng Y, Pence N, Seefeldt LC, Peters JW, Harwood CS, Boyd ES.},
journal = {J Bacteriol},
year = {2018},
doi = {10.1128/jb.00757-17},
pmid = {29483165}
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@article{lin105199,
title = {Influence of the [4Fe-4S] cluster coordinating cysteines on active site maturation and catalytic properties of C. reinhardtii [FeFe]-hydrogenase.},
author = {Kertess L, Adamska-Venkatesh A, Rodriguez-Macia P, Rudiger O, Lubitz W, Happe T.},
journal = {Chem Sci},
year = {2017},
doi = {10.1039/c7sc03444j},
pmid = {29568461}
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@article{lin105322,
title = {Flavin-Based Electron Bifurcation, Ferredoxin, Flavodoxin, and Anaerobic Respiration With Protons (Ech) or NAD+ (Rnf) as Electron Acceptors: A Historical Review.},
author = {Buckel W, Thauer RK.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.00401},
pmid = {29593673}
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@article{lin105135,
title = {Spectroscopic investigations of a semi-synthetic [FeFe] hydrogenase with propane di-selenol as bridging ligand in the binuclear subsite: comparison to the wild type and propane di-thiol variants.},
author = {Sommer C, Rumpel S, Roy S, Fares C, Artero V, Fontecave M, Reijerse E, Lubitz W.},
journal = {J Biol Inorg Chem},
year = {2018},
doi = {10.1007/s00775-018-1558-4},
pmid = {29627860}
}
@article{lin104637,
title = {Flow cytometry analysis of Clostridium beijerinckii NRRL B-598 populations exhibiting different phenotypes induced by changes in cultivation conditions.},
author = {Branska B, Pechacova Z, Kolek J, Vasylkivska M, Patakova P.},
journal = {Biotechnol Biofuels},
year = {2018},
doi = {10.1186/s13068-018-1096-x},
pmid = {29632557}
}
@article{lin104734,
title = {Microbial synthesis of metallic molybdenum nanoparticles.},
author = {Nordmeier A, Merwin A, Roeper DF, Chidambaram D.},
journal = {Chemosphere},
year = {2018},
doi = {10.1016/j.chemosphere.2018.02.079},
pmid = {29649694}
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@article{lin370107,
title = {Increased prevalence of pathogenic bacteria in the gut microbiota of infants at risk of developing celiac disease: The PROFICEL study.},
author = {Olivares M, Benitez-Paez A, de Palma G, Capilla A, Nova E, Castillejo G, Varea V, Marcos A, Garrote JA, Polanco I, Donat E, Ribes-Koninckx C, Calvo C, Ortigosa L, Palau F, Sanz Y.},
journal = {Gut Microbes},
year = {2018},
doi = {10.1080/19490976.2018.1451276},
pmid = {29672211}
}
@article{lin104735,
title = {Application of forward osmosis technology in crude glycerol fermentation biorefinery-potential and challenges.},
author = {Kalafatakis S, Braekevelt S, Lymperatou A, Zarebska A, Helix-Nielsen C, Lange L, Skiadas IV, Gavala HN.},
journal = {Bioprocess Biosyst Eng},
year = {2018},
doi = {10.1007/s00449-018-1938-8},
pmid = {29691653}
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@article{lin105213,
title = {A Cloning-Free Method for CRISPR/Cas9-Mediated Genome Editing in Fission Yeast.},
author = {Zhang XR, He JB, Wang YZ, Du LL.},
journal = {G3 (Bethesda)},
year = {2018},
doi = {10.1534/g3.118.200164},
pmid = {29703785}
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@article{lin104997,
title = {Conformationally Gated Electron Transfer in Nitrogenase. Isolation, Purification, and Characterization of Nitrogenase From Gluconacetobacter diazotrophicus.},
author = {Owens CP, Tezcan FA.},
journal = {Methods Enzymol},
year = {2018},
doi = {10.1016/bs.mie.2017.09.007},
pmid = {29746246}
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@article{lin104935,
title = {Genetically Engineered Strains: Application and Advances for 1,3-Propanediol Production from Glycerol.},
author = {Yang M, Yun J, Zhang H, Magocha TA, Zabed H, Xue Y, Fokum E, Sun W, Qi X, Qi X.},
journal = {Food Technol Biotechnol},
year = {2018},
doi = {10.17113/ftb.56.01.18.5444},
pmid = {29795992}
}
@article{lin104611,
title = {Transcription profiling of butanol producer Clostridium beijerinckii NRRL B-598 using RNA-Seq.},
author = {Sedlar K, Koscova P, Vasylkivska M, Branska B, Kolek J, Kupkova K, Patakova P, Provaznik I.},
journal = {BMC Genomics},
year = {2018},
doi = {10.1186/s12864-018-4805-8},
pmid = {29843608}
}
@article{lin104931,
title = {A structural view of synthetic cofactor integration into [FeFe]-hydrogenases.},
author = {Esselborn J, Muraki N, Klein K, Engelbrecht V, Metzler-Nolte N, Apfel UP, Hofmann E, Kurisu G, Happe T.},
journal = {Chem Sci},
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doi = {10.1039/c5sc03397g},
pmid = {29896366}
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@article{lin104904,
title = {Comparison of Acetate-butyrate and Acetate-ethanol Metabolic Pathway in Biohydrogen Production.},
author = {Taheri E, Amin MM, Pourzamani H, Fatehizadeh A, Ghasemian M, Bina B.},
journal = {J Med Signals Sens},
year = {2018},
doi = {10.4103/2228-7477.232089},
pmid = {29928635}
}
@article{lin105121,
title = {Growth and Product Formation of Clostridium ljungdahlii in Presence of Cyanide.},
author = {Oswald F, Zwick M, Omar O, Hotz EN, Neumann A.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01213},
pmid = {29951043}
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@article{lin370106,
title = {Aflatoxins and A. flavus Reduction in Loaf Bread through the Use of Natural Ingredients.},
author = {Quiles JM, Torrijos R, Luciano FB, Manes J, Meca G.},
journal = {Molecules},
year = {2018},
doi = {10.3390/molecules23071638},
pmid = {29973577}
}
@article{lin104860,
title = {Spectroscopical Investigations on the Redox Chemistry of [FeFe]-Hydrogenases in the Presence of Carbon Monoxide.},
author = {Laun K, Mebs S, Duan J, Wittkamp F, Apfel UP, Happe T, Winkler M, Haumann M, Stripp ST.},
journal = {Molecules},
year = {2018},
doi = {10.3390/molecules23071669},
pmid = {29987246}
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@article{lin105402,
title = {X-ray and cryo-EM structures of the mitochondrial calcium uniporter.},
author = {Fan C, Fan M, Orlando BJ, Fastman NM, Zhang J, Xu Y, Chambers MG, Xu X, Perry K, Liao M, Feng L.},
journal = {Nature},
year = {2018},
doi = {10.1038/s41586-018-0330-9},
pmid = {29995856}
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@article{lin105094,
title = {On the Natural History of Flavin-Based Electron Bifurcation.},
author = {Baymann F, Schoepp-Cothenet B, Duval S, Guiral M, Brugna M, Baffert C, Russell MJ, Nitschke W.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01357},
pmid = {30018596}
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@article{lin104955,
title = {Identification of Clostridium spp. derived from a sheep and cattle slaughterhouse by matrix-assisted laser desorption and ionization-time of flight mass spectrometry (MALDI-TOF MS) and 16S rDNA sequencing.},
author = {Bakhtiary F, Sayevand HR, Remely M, Hippe B, Indra A, Hosseini H, Haslberger AG.},
journal = {J Food Sci Technol},
year = {2018},
doi = {10.1007/s13197-018-3255-2},
pmid = {30065434}
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@article{lin104959,
title = {Electronic Structure of Two Catalytic States of the [FeFe] Hydrogenase H-Cluster As Probed by Pulse Electron Paramagnetic Resonance Spectroscopy.},
author = {Rao G, Britt RD.},
journal = {Inorg Chem},
year = {2018},
doi = {10.1021/acs.inorgchem.8b01557},
pmid = {30106575}
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@article{lin105544,
title = {Origin and Evolution of Flavin-Based Electron Bifurcating Enzymes.},
author = {Poudel S, Dunham EC, Lindsay MR, Amenabar MJ, Fones EM, Colman DR, Boyd ES.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01762},
pmid = {30123204}
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@article{lin370111,
title = {Isolation by Miniaturized Culture Chip of an Antarctic bacterium Aequorivita sp. with antimicrobial and anthelmintic activity.},
author = {Palma Esposito F, Ingham CJ, Hurtado-Ortiz R, Bizet C, Tasdemir D, de Pascale D.},
journal = {Biotechnol Rep (Amst)},
year = {2018},
doi = {10.1016/j.btre.2018.e00281},
pmid = {30225207}
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@article{lin105137,
title = {Selenite Reduction and the Biogenesis of Selenium Nanoparticles by Alcaligenesfaecalis Se03 Isolated from the Gut of Monochamus alternatus (Coleoptera: Cerambycidae).},
author = {Wang Y, Shu X, Zhou Q, Fan T, Wang T, Chen X, Li M, Ma Y, Ni J, Hou J, Zhao W, Li R, Huang S, Wu L.},
journal = {Int J Mol Sci},
year = {2018},
doi = {10.3390/ijms19092799},
pmid = {30227664}
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@article{lin104731,
title = {A novel strategy to enhance biohydrogen production using graphene oxide treated thermostable crude cellulase and sugarcane bagasse hydrolyzate under co-culture system.},
author = {Srivastava N, Srivastava M, Gupta VK, Ramteke PW, Mishra PK.},
journal = {Bioresour Technol},
year = {2018},
doi = {10.1016/j.biortech.2018.09.038},
pmid = {30241067}
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@article{lin104998,
title = {Alanine, a Novel Growth Substrate for the Acetogenic Bacterium Acetobacterium woodii.},
author = {Donig J, Muller V.},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/aem.02023-18},
pmid = {30242008}
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@article{lin370109,
title = {Biobutanol production from coffee silverskin.},
author = {Hijosa-Valsero M, Garita-Cambronero J, Paniagua-Garcia AI, Diez-Antolinez R.},
journal = {Microb Cell Fact},
year = {2018},
doi = {10.1186/s12934-018-1002-z},
pmid = {30261894}
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@article{lin370117,
title = {Three Antifungal Proteins From Penicillium expansum: Different Patterns of Production and Antifungal Activity.},
author = {Garrigues S, Gandia M, Castillo L, Coca M, Marx F, Marcos JF, Manzanares P.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02370},
pmid = {30344516}
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@article{lin105225,
title = {Ferredoxins as interchangeable redox components in support of MiaB, a radical S-adenosylmethionine methylthiotransferase.},
author = {Arcinas AJ, Maiocco SJ, Elliott SJ, Silakov A, Booker SJ.},
journal = {Protein Sci},
year = {2019},
doi = {10.1002/pro.3548},
pmid = {30394621}
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@article{lin105124,
title = {Crystallographic and spectroscopic assignment of the proton transfer pathway in [FeFe]-hydrogenases.},
author = {Duan J, Senger M, Esselborn J, Engelbrecht V, Wittkamp F, Apfel UP, Hofmann E, Stripp ST, Happe T, Winkler M.},
journal = {Nat Commun},
year = {2018},
doi = {10.1038/s41467-018-07140-x},
pmid = {30413719}
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@article{lin104861,
title = {Parsing redox potentials of five ferredoxins found within Thermotoga maritima.},
author = {Maiocco SJ, Arcinas AJ, Booker SJ, Elliott SJ.},
journal = {Protein Sci},
year = {2019},
doi = {10.1002/pro.3547},
pmid = {30418685}
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@article{lin104595,
title = {Hydrogen production by Sulfurospirillum species enables syntrophic interactions of Epsilonproteobacteria.},
author = {Kruse S, Goris T, Westermann M, Adrian L, Diekert G.},
journal = {Nat Commun},
year = {2018},
doi = {10.1038/s41467-018-07342-3},
pmid = {30451902}
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@article{lin104727,
title = {Diffusion network of CO in FeFe-Hydrogenase.},
author = {Liu Y, Mohammadi M, Vashisth H.},
journal = {J Chem Phys},
year = {2018},
doi = {10.1063/1.5054877},
pmid = {30501239}
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@article{lin104810,
title = {Ferredoxin-linked flavoenzyme defines a family of pyridine nucleotide-independent thioredoxin reductases.},
author = {Buey RM, Fernandez-Justel D, de Pereda JM, Revuelta JL, Schurmann P, Buchanan BB, Balsera M.},
journal = {Proc Natl Acad Sci U S A},
year = {2018},
doi = {10.1073/pnas.1812781115},
pmid = {30510005}
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@article{lin105214,
title = {l-Rhamnose Metabolism in Clostridium beijerinckii Strain DSM 6423.},
author = {Diallo M, Simons AD, van der Wal H, Collas F, Houweling-Tan B, Kengen SWM, Lopez-Contreras AM.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.02656-18},
pmid = {30578270}
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@article{lin105226,
title = {Metatranscriptomic and comparative genomic insights into resuscitation mechanisms during enrichment culturing.},
author = {Mu DS, Liang QY, Wang XM, Lu DC, Shi MJ, Chen GJ, Du ZJ.},
journal = {Microbiome},
year = {2018},
doi = {10.1186/s40168-018-0613-2},
pmid = {30587241}
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@article{lin104811,
title = {N-methyl-bacillithiol, a Novel Thiol from Anaerobic Bacteria.},
author = {Newton GL, Rawat M.},
journal = {mBio},
year = {2019},
doi = {10.1128/mbio.02634-18},
pmid = {30647158}
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@article{lin105098,
title = {To Fix or Not To Fix: Controls on Free-Living Nitrogen Fixation in the Rhizosphere.},
author = {Smercina DN, Evans SE, Friesen ML, Tiemann LK.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.02546-18},
pmid = {30658971}
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@article{lin105220,
title = {Engineering Clostridial Aldehyde/Alcohol Dehydrogenase for Selective Butanol Production.},
author = {Cho C, Hong S, Moon HG, Jang YS, Kim D, Lee SY.},
journal = {mBio},
year = {2019},
doi = {10.1128/mbio.02683-18},
pmid = {30670620}
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@article{lin105429,
title = {Pan-genome analyses of model fungal species.},
author = {McCarthy CGP, Fitzpatrick DA.},
journal = {Microb Genom},
year = {2019},
doi = {10.1099/mgen.0.000243},
pmid = {30714895}
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@article{lin105205,
title = {Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in Clostridium beijerinckii NRRL B-598 at the transcriptomic level.},
author = {Patakova P, Branska B, Sedlar K, Vasylkivska M, Jureckova K, Kolek J, Koscova P, Provaznik I.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-018-37679-0},
pmid = {30718562}
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@article{lin105022,
title = {Suppression of hesA mutation on nitrogenase activity in Paenibacillus polymyxa WLY78 with the addition of high levels of molybdate or cystine.},
author = {Liu X, Zhao X, Li X, Chen S.},
journal = {PeerJ},
year = {2019},
doi = {10.7717/peerj.6294},
pmid = {30723617}
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@article{lin104715,
title = {Enhanced electron transfer of different mediators for strictly opposite shifting of metabolism in Clostridium pasteurianum grown on glycerol in a new electrochemical bioreactor.},
author = {Utesch T, Sabra W, Prescher C, Baur J, Arbter P, Zeng AP.},
journal = {Biotechnol Bioeng},
year = {2019},
doi = {10.1002/bit.26963},
pmid = {30825383}
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@article{lin104982,
title = {Energy conservation by a hydrogenase-dependent chemiosmotic mechanism in an ancient metabolic pathway.},
author = {Schoelmerich MC, Muller V.},
journal = {Proc Natl Acad Sci U S A},
year = {2019},
doi = {10.1073/pnas.1818580116},
pmid = {30850546}
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@article{lin105483,
title = {Biochemistry, genetics and biotechnology of glycerol utilization in Pseudomonas species.},
author = {Poblete-Castro I, Wittmann C, Nikel PI.},
journal = {Microb Biotechnol},
year = {2020},
doi = {10.1111/1751-7915.13400},
pmid = {30883020}
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@article{lin104633,
title = {Metabolic engineering of Clostridium beijerinckii to improve glycerol metabolism and furfural tolerance.},
author = {Agu CV, Ujor V, Ezeji TC.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1388-9},
pmid = {30899330}
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@article{lin104640,
title = {Adaptability of Klebsiella pneumoniae 2e, a Newly Isolated 1,3-Propanediol-Producing Strain, to Crude Glycerol as Revealed by Genomic Profiling.},
author = {Ma J, Jiang H, Hector SB, Xiao Z, Li J, Liu R, Li C, Zeng B, Liu GQ, Zhu Y.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.00254-19},
pmid = {30902851}
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@article{lin104709,
title = {Stimulation of ferrihydrite nanorods on fermentative hydrogen production by Clostridium pasteurianum.},
author = {Zhang Y, Xiao L, Wang S, Liu F.},
journal = {Bioresour Technol},
year = {2019},
doi = {10.1016/j.biortech.2019.03.088},
pmid = {30921584}
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@article{lin104711,
title = {Homologous overexpression of hydrogenase and glycerol dehydrogenase in Clostridium pasteurianum to enhance hydrogen production from crude glycerol.},
author = {Sarma S, Ortega D, Minton NP, Dubey VK, Moholkar VS.},
journal = {Bioresour Technol},
year = {2019},
doi = {10.1016/j.biortech.2019.03.074},
pmid = {30933825}
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@article{lin104806,
title = {Biosynthesis of Selenium Nanoparticles using yeast Nematospora coryli and examination of their anti-candida and anti-oxidant activities.},
author = {Rasouli M.},
journal = {IET Nanobiotechnol},
year = {2019},
doi = {10.1049/iet-nbt.2018.5187},
pmid = {31051453}
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@article{lin105108,
title = {Development of a Shelf-Stable Banana Purée by Combined Factors: Microbial Stability.},
author = {Guerrero S, Guerrero S, Alzamora SM, Gerschenson LN.},
journal = {J Food Prot},
year = {1994},
doi = {10.4315/0362-028x-57.10.902},
pmid = {31121689}
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@article{lin7889,
title = {Clostridium prolinivorans sp. nov., a thermophilic bacterium isolated from an anaerobic reactor degrading propionate.},
author = {Huang Y, Wei Z, Cong L, Qiu Z, Chen R, Deng Y, Zhang Y, Fan H, Ma S},
journal = {Int J Syst Evol Microbiol},
year = {2019},
doi = {10.1099/ijsem.0.003523},
pmid = {31199222}
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@article{lin105138,
title = {Enzymatic biosynthesis and immobilization of polyprotein verified at the single-molecule level.},
author = {Deng Y, Wu T, Wang M, Shi S, Yuan G, Li X, Chong H, Wu B, Zheng P.},
journal = {Nat Commun},
year = {2019},
doi = {10.1038/s41467-019-10696-x},
pmid = {31235796}
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@article{lin104840,
title = {Organometallic compounds as carriers of extraterrestrial cyanide in primitive meteorites.},
author = {Smith KE, House CH, Arevalo RD, Dworkin JP, Callahan MP.},
journal = {Nat Commun},
year = {2019},
doi = {10.1038/s41467-019-10866-x},
pmid = {31239434}
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@article{lin105025,
title = {De novo design of symmetric ferredoxins that shuttle electrons in vivo.},
author = {Mutter AC, Tyryshkin AM, Campbell IJ, Poudel S, Bennett GN, Silberg JJ, Nanda V, Falkowski PG.},
journal = {Proc Natl Acad Sci U S A},
year = {2019},
doi = {10.1073/pnas.1905643116},
pmid = {31262814}
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@article{lin105136,
title = {Structural Analysis of a Nitrogenase Iron Protein from Methanosarcina acetivorans: Implications for CO2 Capture by a Surface-Exposed [Fe4S4] Cluster.},
author = {Rettberg LA, Kang W, Stiebritz MT, Hiller CJ, Lee CC, Liedtke J, Ribbe MW, Hu Y.},
journal = {mBio},
year = {2019},
doi = {10.1128/mbio.01497-19},
pmid = {31289188}
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@article{lin104939,
title = {Uptake and reduction of Se(IV) in two heterotrophic aerobic Pseudomonads strains isolated from boreal bog environment.},
author = {Lusa M, Knuutinen J, Bomberg M.},
journal = {AIMS Microbiol},
year = {2017},
doi = {10.3934/microbiol.2017.4.798},
pmid = {31294190}
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@article{lin104851,
title = {The final steps of [FeFe]-hydrogenase maturation.},
author = {Lampret O, Esselborn J, Haas R, Rutz A, Booth RL, Kertess L, Wittkamp F, Megarity CF, Armstrong FA, Winkler M, Happe T.},
journal = {Proc Natl Acad Sci U S A},
year = {2019},
doi = {10.1073/pnas.1908121116},
pmid = {31337676}
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@article{lin104958,
title = {Molecular Evolution and Functional Analysis of Rubredoxin-Like Proteins in Plants.},
author = {Li Y, Liu PP, Ni X.},
journal = {Biomed Res Int},
year = {2019},
doi = {10.1155/2019/2932585},
pmid = {31355252}
}
@article{lin104795,
title = {Offline Next Generation Metagenomics Sequence Analysis Using MinION Detection Software (MINDS).},
author = {Deshpande SV, Reed TM, Sullivan RF, Kerkhof LJ, Beigel KM, Wade MM.},
journal = {Genes (Basel)},
year = {2019},
doi = {10.3390/genes10080578},
pmid = {31366182}
}
@article{lin105216,
title = {Structural and Functional Characterization of an Electron Transfer Flavoprotein Involved in Toluene Degradation in Strictly Anaerobic Bacteria.},
author = {Vogt MS, Schuhle K, Kolzer S, Peschke P, Chowdhury NP, Kleinsorge D, Buckel W, Essen LO, Heider J.},
journal = {J Bacteriol},
year = {2019},
doi = {10.1128/jb.00326-19},
pmid = {31405915}
}
@article{lin104588,
title = {Replacement of l-Amino Acids by d-Amino Acids in the Antimicrobial Peptide Ranalexin and Its Consequences for Antimicrobial Activity and Biodistribution.},
author = {Domhan C, Uhl P, Kleist C, Zimmermann S, Umstatter F, Leotta K, Mier W, Wink M.},
journal = {Molecules},
year = {2019},
doi = {10.3390/molecules24162987},
pmid = {31426494}
}
@article{lin104888,
title = {Structural and functional analysis of "non-smelly" proteins.},
author = {Yan J, Cheng J, Kurgan L, Uversky VN.},
journal = {Cell Mol Life Sci},
year = {2020},
doi = {10.1007/s00018-019-03292-1},
pmid = {31486849}
}
@article{lin105072,
title = {Maize Inoculation with Microbial Consortia: Contrasting Effects on Rhizosphere Activities, Nutrient Acquisition and Early Growth in Different Soils.},
author = {Bradacova K, Sittinger M, Tietz K, Neuhauser B, Kandeler E, Berger N, Ludewig U, Neumann G.},
journal = {Microorganisms},
year = {2019},
doi = {10.3390/microorganisms7090329},
pmid = {31500269}
}
@article{lin105295,
title = {Using the Endogenous CRISPR-Cas System of Heliobacterium modesticaldum To Delete the Photochemical Reaction Center Core Subunit Gene.},
author = {Baker PL, Orf GS, Kevershan K, Pyne ME, Bicer T, Redding KE.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.01644-19},
pmid = {31540988}
}
@article{lin104710,
title = {Characterization and Engineering of a Clostridium Glycine Riboswitch and Its Use To Control a Novel Metabolic Pathway for 5-Aminolevulinic Acid Production in Escherichia coli.},
author = {Zhou L, Ren J, Li Z, Nie J, Wang C, Zeng AP.},
journal = {ACS Synth Biol},
year = {2019},
doi = {10.1021/acssynbio.9b00137},
pmid = {31550137}
}
@article{lin7888,
title = {Increased Butanol Yields through Cosubstrate Fermentation of Jerusalem Artichoke Tubers and Crude Glycerol by Clostridium pasteurianum DSM 525.},
author = {Sarchami T, Rehmann L},
journal = {ACS Omega},
year = {2019},
doi = {10.1021/acsomega.9b00879},
pmid = {31572853}
}
@article{lin105000,
title = {How [FeFe]-Hydrogenase Facilitates Bidirectional Proton Transfer.},
author = {Senger M, Eichmann V, Laun K, Duan J, Wittkamp F, Knor G, Apfel UP, Happe T, Winkler M, Heberle J, Stripp ST.},
journal = {J Am Chem Soc},
year = {2019},
doi = {10.1021/jacs.9b09225},
pmid = {31580662}
}
@article{lin104719,
title = {Loss of Specific Active-Site Iron Atoms in Oxygen-Exposed [FeFe]-Hydrogenase Determined by Detailed X-ray Structure Analyses.},
author = {Esselborn J, Kertess L, Apfel UP, Hofmann E, Happe T.},
journal = {J Am Chem Soc},
year = {2019},
doi = {10.1021/jacs.9b07808},
pmid = {31609603}
}
@article{lin104886,
title = {Extending electron paramagnetic resonance to nanoliter volume protein single crystals using a self-resonant microhelix.},
author = {Sidabras JW, Duan J, Winkler M, Happe T, Hussein R, Zouni A, Suter D, Schnegg A, Lubitz W, Reijerse EJ.},
journal = {Sci Adv},
year = {2019},
doi = {10.1126/sciadv.aay1394},
pmid = {31620561}
}
@article{lin104606,
title = {A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock.},
author = {Sedlar K, Kolek J, Gruber M, Jureckova K, Branska B, Csaba G, Vasylkivska M, Zimmer R, Patakova P, Provaznik I.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1584-7},
pmid = {31636702}
}
@article{lin104722,
title = {Designing a modified clostridial 2[4Fe-4S] ferredoxin as a redox coupler to directly link photosystem I with a Pt nanoparticle.},
author = {Walters KA, Golbeck JH.},
journal = {Photosynth Res},
year = {2020},
doi = {10.1007/s11120-019-00679-w},
pmid = {31643016}
}
@article{lin105204,
title = {Characterization and repurposing of the endogenous Type I-F CRISPR-Cas system of Zymomonas mobilis for genome engineering.},
author = {Zheng Y, Han J, Wang B, Hu X, Li R, Shen W, Ma X, Ma L, Yi L, Yang S, Peng W.},
journal = {Nucleic Acids Res},
year = {2019},
doi = {10.1093/nar/gkz940},
pmid = {31647102}
}
@article{lin105046,
title = {Effectiveness of nitrogen fixation in rhizobia.},
author = {Lindstrom K, Mousavi SA.},
journal = {Microb Biotechnol},
year = {2020},
doi = {10.1111/1751-7915.13517},
pmid = {31797528}
}
@article{lin104777,
title = {Tuning Catalytic Bias of Hydrogen Gas Producing Hydrogenases.},
author = {Artz JH, Zadvornyy OA, Mulder DW, Keable SM, Cohen AE, Ratzloff MW, Williams SG, Ginovska B, Kumar N, Song J, McPhillips SE, Davidson CM, Lyubimov AY, Pence N, Schut GJ, Jones AK, Soltis SM, Adams MWW, Adams MWW, Raugei S, King PW, Peters JW.},
journal = {J Am Chem Soc},
year = {2020},
doi = {10.1021/jacs.9b08756},
pmid = {31816235}
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@article{lin370104,
title = {Quantitative and Compositional Study of Monospecies Biofilms of Spoilage Microorganisms in the Meat Industry and Their Interaction in the Development of Multispecies Biofilms.},
author = {Ripolles-Avila C, Garcia-Hernandez N, Cervantes-Huaman BH, Mazaheri T, Rodriguez-Jerez JJ.},
journal = {Microorganisms},
year = {2019},
doi = {10.3390/microorganisms7120655},
pmid = {31817368}
}
@article{lin105154,
title = {Spectroscopic and biochemical insight into an electron-bifurcating [FeFe] hydrogenase.},
author = {Chongdar N, Pawlak K, Rudiger O, Reijerse EJ, Rodriguez-Macia P, Lubitz W, Birrell JA, Ogata H.},
journal = {J Biol Inorg Chem},
year = {2020},
doi = {10.1007/s00775-019-01747-1},
pmid = {31823008}
}
@article{lin105101,
title = {Energy-Conserving Enzyme Systems Active During Syntrophic Acetate Oxidation in the Thermophilic Bacterium Thermacetogenium phaeum.},
author = {Keller A, Schink B, Muller N.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.02785},
pmid = {31849917}
}
@article{lin104592,
title = {Comparative Genomic Analysis of Soil Dwelling Bacteria Utilizing a Combinational Codon Usage and Molecular Phylogenetic Approach Accentuating on Key Housekeeping Genes.},
author = {Saha J, Saha BK, Pal Sarkar M, Roy V, Mandal P, Pal A.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.02896},
pmid = {31921071}
}
@article{lin104956,
title = {Current Progress in Nitrogen Fixing Plants and Microbiome Research.},
author = {Mahmud K, Makaju S, Ibrahim R, Missaoui A.},
journal = {Plants (Basel)},
year = {2020},
doi = {10.3390/plants9010097},
pmid = {31940996}
}
@article{lin370114,
title = {A Human Lung-Associated Streptomyces sp. TR1341 Produces Various Secondary Metabolites Responsible for Virulence, Cytotoxicity and Modulation of Immune Response.},
author = {Herbrik A, Corretto E, Chronakova A, Langhansova H, Petraskova P, Hrdy J, Cihak M, Kristufek V, Bobek J, Petricek M, Petrickova K.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.03028},
pmid = {32010093}
}
@article{lin104916,
title = {Selecting for lactic acid producing and utilising bacteria in anaerobic enrichment cultures.},
author = {Rombouts JL, Kranendonk EMM, Regueira A, Weissbrodt DG, Kleerebezem R, van Loosdrecht MCM.},
journal = {Biotechnol Bioeng},
year = {2020},
doi = {10.1002/bit.27301},
pmid = {32034763}
}
@article{lin104712,
title = {Enhanced Electrosynthetic Hydrogen Evolution by Hydrogenases Embedded in a Redox-Active Hydrogel.},
author = {Ruth JC, Milton RD, Gu W, Spormann AM.},
journal = {Chemistry},
year = {2020},
doi = {10.1002/chem.202000750},
pmid = {32074397}
}
@article{lin104716,
title = {Enrichment of Nitrogen-Fixing Bacteria in a Nitrogen-Deficient Wastewater Treatment System.},
author = {Ospina-Betancourth C, Acharya K, Allen B, Entwistle J, Head IM, Sanabria J, Curtis TP.},
journal = {Environ Sci Technol},
year = {2020},
doi = {10.1021/acs.est.9b05322},
pmid = {32083474}
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@article{lin105004,
title = {Factors and Conditions That Impact Electroporation of Clostridioides difficile Strains.},
author = {Bhattacharjee D, Sorg JA.},
journal = {mSphere},
year = {2020},
doi = {10.1128/msphere.00941-19},
pmid = {32132157}
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@article{lin105352,
title = {Genetic engineering of non-native hosts for 1-butanol production and its challenges: a review.},
author = {Nawab S, Wang N, Wang N, Ma X, Huo YX.},
journal = {Microb Cell Fact},
year = {2020},
doi = {10.1186/s12934-020-01337-w},
pmid = {32220254}
}
@article{lin105017,
title = {Application of a Krypton-Chlorine Excilamp To Control Alicyclobacillus acidoterrestris Spores in Apple Juice and Identification of Its Sporicidal Mechanism.},
author = {Kang JW, Hong HN, Kang DH.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.00159-20},
pmid = {32220842}
}
@article{lin105257,
title = {Adaptive Evolution of Geobacter sulfurreducens in Coculture with Pseudomonas aeruginosa.},
author = {Semenec L, Vergara IA, Laloo AE, Petrovski S, Bond PL, Franks AE.},
journal = {mBio},
year = {2020},
doi = {10.1128/mbio.02875-19},
pmid = {32265334}
}
@article{lin105162,
title = {The Small RNA sr8384 Is a Crucial Regulator of Cell Growth in Solventogenic Clostridia.},
author = {Yang Y, Zhang H, Lang N, Zhang L, Chai C, He H, Jiang W, Gu Y.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.00665-20},
pmid = {32358006}
}
@article{lin370073,
title = {Biodiversity and Phylogenetic Relationships of Novel Bacteriocinogenic Strains Isolated from Animal's Droppings at the Zoological Garden of Lille, France.},
author = {Eveno M, Salouhi A, Belguesmia Y, Bazinet L, Gancel F, Fliss I, Drider D.},
journal = {Probiotics Antimicrob Proteins},
year = {2021},
doi = {10.1007/s12602-020-09657-4},
pmid = {32388703}
}
@article{lin105118,
title = {Challenges and Advances in Genome Editing Technologies in Streptomyces.},
author = {Zhao Y, Li G, Chen Y, Lu Y.},
journal = {Biomolecules},
year = {2020},
doi = {10.3390/biom10050734},
pmid = {32397082}
}
@article{lin104974,
title = {Caught in the Hinact : Crystal Structure and Spectroscopy Reveal a Sulfur Bound to the Active Site of an O2 -stable State of [FeFe] Hydrogenase.},
author = {Rodriguez-Macia P, Galle LM, Bjornsson R, Lorent C, Zebger I, Yoda Y, Cramer SP, DeBeer S, Span I, Birrell JA.},
journal = {Angew Chem Int Ed Engl},
year = {2020},
doi = {10.1002/anie.202005208},
pmid = {32488975}
}
@article{lin104702,
title = {Large anions induce H2-production from the nitrogenase MoFe proteins of Clostridium Pasteurianum and Azotobacter vinelandii.},
author = {Wang ZC, Watt GD.},
journal = {J Inorg Biochem},
year = {2020},
doi = {10.1016/j.jinorgbio.2020.111075},
pmid = {32502717}
}
@article{lin104635,
title = {Nitrogen Fixation in Pozol, a Traditional Fermented Beverage.},
author = {Rizo J, Rogel MA, Guillen D, Wacher C, Martinez-Romero E, Encarnacion S, Sanchez S, Rodriguez-Sanoja R.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.00588-20},
pmid = {32503911}
}
@article{lin105549,
title = {Structural Enzymology of Nitrogenase Enzymes.},
author = {Einsle O, Rees DC.},
journal = {Chem Rev},
year = {2020},
doi = {10.1021/acs.chemrev.0c00067},
pmid = {32538623}
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@article{lin104846,
title = {Adenosine-5'-Phosphosulfate- and Sulfite Reductases Activities of Sulfate-Reducing Bacteria from Various Environments.},
author = {Kushkevych I, Abdulina D, Kovac J, Dordevic D, Vitezova M, Iutynska G, Rittmann SKR.},
journal = {Biomolecules},
year = {2020},
doi = {10.3390/biom10060921},
pmid = {32560561}
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@article{lin105163,
title = {Repurposing type I-F CRISPR-Cas system as a transcriptional activation tool in human cells.},
author = {Chen Y, Liu J, Zhi S, Zheng Q, Ma W, Huang J, Liu Y, Liu D, Liang P, Songyang Z.},
journal = {Nat Commun},
year = {2020},
doi = {10.1038/s41467-020-16880-8},
pmid = {32561716}
}
@article{lin104594,
title = {A ferredoxin-dependent dihydropyrimidine dehydrogenase in Clostridium chromiireducens.},
author = {Wang F, Wei Y, Lu Q, Ang EL, Zhao H, Zhang Y.},
journal = {Biosci Rep},
year = {2020},
doi = {10.1042/bsr20201642},
pmid = {32614053}
}
@article{lin7890,
title = {A novel All-in-One electrolysis electrode and bioreactor enable better study of electrochemical effects and electricity-aided bioprocesses.},
author = {Utesch T, Zeng AP},
journal = {Eng Life Sci},
year = {2018},
doi = {10.1002/elsc.201700198},
pmid = {32624940}
}
@article{lin104568,
title = {Improved electrocompetence and metabolic engineering of Clostridium pasteurianum reveals a new regulation pattern of glycerol fermentation.},
author = {Schmitz R, Sabra W, Arbter P, Hong Y, Utesch T, Zeng AP.},
journal = {Eng Life Sci},
year = {2019},
doi = {10.1002/elsc.201800118},
pmid = {32625019}
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@article{lin105109,
title = {The Beta Subunit of Non-bifurcating NADH-Dependent [FeFe]-Hydrogenases Differs From Those of Multimeric Electron-Bifurcating [FeFe]-Hydrogenases.},
author = {Losey NA, Poudel S, Boyd ES, McInerney MJ.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01109},
pmid = {32625172}
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@article{lin104912,
title = {Multicolor fluorescence imaging using a single RGB-IR CMOS sensor for cancer detection with smURFP-labeled probiotics.},
author = {Oh G, Cho HJ, Suh S, Lee D, Kim K.},
journal = {Biomed Opt Express},
year = {2020},
doi = {10.1364/boe.391417},
pmid = {32637234}
}
@article{lin105157,
title = {Diazotroph Genomes and Their Seasonal Dynamics in a Stratified Humic Bog Lake.},
author = {Fernandez L, Peura S, Eiler A, Linz AM, McMahon KD, Bertilsson S.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01500},
pmid = {32714313}
}
@article{lin104995,
title = {The Rnf complex is a Na+ coupled respiratory enzyme in a fermenting bacterium, Thermotoga maritima.},
author = {Kuhns M, Trifunovic D, Huber H, Muller V.},
journal = {Commun Biol},
year = {2020},
doi = {10.1038/s42003-020-01158-y},
pmid = {32770029}
}
@article{lin104817,
title = {The roles of long-range proton-coupled electron transfer in the directionality and efficiency of [FeFe]-hydrogenases.},
author = {Lampret O, Duan J, Hofmann E, Winkler M, Armstrong FA, Happe T.},
journal = {Proc Natl Acad Sci U S A},
year = {2020},
doi = {10.1073/pnas.2007090117},
pmid = {32796105}
}
@article{lin104890,
title = {Exploiting Biological Nitrogen Fixation: A Route Towards a Sustainable Agriculture.},
author = {Soumare A, Diedhiou AG, Thuita M, Hafidi M, Ouhdouch Y, Gopalakrishnan S, Kouisni L.},
journal = {Plants (Basel)},
year = {2020},
doi = {10.3390/plants9081011},
pmid = {32796519}
}
@article{lin105482,
title = {Underground isoleucine biosynthesis pathways in E. coli.},
author = {Cotton CA, Bernhardsgrutter I, He H, Burgener S, Schulz L, Paczia N, Dronsella B, Erban A, Toman S, Dempfle M, De Maria A, Kopka J, Lindner SN, Erb TJ, Bar-Even A.},
journal = {Elife},
year = {2020},
doi = {10.7554/elife.54207},
pmid = {32831171}
}
@article{lin104615,
title = {Towards continuous industrial bioprocessing with solventogenic and acetogenic clostridia: challenges, progress and perspectives.},
author = {Vees CA, Neuendorf CS, Pflugl S.},
journal = {J Ind Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s10295-020-02296-2},
pmid = {32894379}
}
@article{lin104853,
title = {Description of Clostridium cagae sp. nov., Clostridium rectalis sp. nov. and Hathewaya massiliensis sp. nov., new anaerobic bacteria isolated from human stool samples.},
author = {Tall ML, Lo CI, Yimagou EK, Ndongo S, Pham TPT, Raoult D, Fournier PE, Fenollar F, Levasseur A.},
journal = {New Microbes New Infect},
year = {2020},
doi = {10.1016/j.nmni.2020.100719},
pmid = {32944255}
}
@article{lin104575,
title = {Microbial electro-fermentation for synthesis of chemicals and biofuels driven by bi-directional extracellular electron transfer.},
author = {Gong Z, Yu H, Zhang J, Li F, Song H.},
journal = {Synth Syst Biotechnol},
year = {2020},
doi = {10.1016/j.synbio.2020.08.004},
pmid = {32995586}
}
@article{lin104705,
title = {Biohydrogen production in a continuous liquid/gas hollow fiber membrane bioreactor: Efficient retention of hydrogen producing bacteria via granule and biofilm formation.},
author = {Renaudie M, Dumas C, Vuilleumier S, Ernst B.},
journal = {Bioresour Technol},
year = {2021},
doi = {10.1016/j.biortech.2020.124203},
pmid = {33045545}
}
@article{lin104596,
title = {Biofouling Mitigation Approaches during Water Recovery from Fermented Broth via Forward Osmosis.},
author = {Kalafatakis S, Zarebska A, Lange L, Helix-Nielsen C, Skiadas IV, Gavala HN.},
journal = {Membranes (Basel)},
year = {2020},
doi = {10.3390/membranes10110307},
pmid = {33121090}
}
@article{lin104707,
title = {Variability in Arsenic Methylation Efficiency across Aerobic and Anaerobic Microorganisms.},
author = {Viacava K, Meibom KL, Ortega D, Dyer S, Gelb A, Falquet L, Minton NP, Mestrot A, Bernier-Latmani R.},
journal = {Environ Sci Technol},
year = {2020},
doi = {10.1021/acs.est.0c03908},
pmid = {33125231}
}
@article{lin370098,
title = {Simplicilones A and B Isolated from the Endophytic Fungus Simplicillium subtropicum SPC3.},
author = {Anoumedem EGM, Mountessou BYG, Kouam SF, Narmani A, Surup F.},
journal = {Antibiotics (Basel)},
year = {2020},
doi = {10.3390/antibiotics9110753},
pmid = {33138149}
}
@article{lin105174,
title = {Impact of subinhibitory concentrations of metronidazole on proteome of Clostridioides difficile strains with different levels of susceptibility.},
author = {Doan TH, Yen-Nicolay S, Bernet-Camard MF, Martin-Verstraete I, Pechine S.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0241903},
pmid = {33166349}
}
@article{lin104901,
title = {Metabolism, morphology and transcriptome analysis of oscillatory behavior of Clostridium butyricum during long-term continuous fermentation for 1,3-propanediol production.},
author = {Zhou JJ, Shen JT, Wang XL, Sun YQ, Xiu ZL.},
journal = {Biotechnol Biofuels},
year = {2020},
doi = {10.1186/s13068-020-01831-8},
pmid = {33292405}
}
@article{lin104697,
title = {Introduction of glycine synthase enables uptake of exogenous formate and strongly impacts the metabolism in Clostridium pasteurianum.},
author = {Hong Y, Arbter P, Wang W, Rojas LN, Zeng AP.},
journal = {Biotechnol Bioeng},
year = {2021},
doi = {10.1002/bit.27658},
pmid = {33331660}
}
@article{lin104780,
title = {Preparation and spectroscopic characterization of lyophilized Mo nitrogenase.},
author = {Van Stappen C, Decamps L, DeBeer S.},
journal = {J Biol Inorg Chem},
year = {2021},
doi = {10.1007/s00775-020-01838-4},
pmid = {33381859}
}
@article{lin104791,
title = {Electrochemical Characterization of a Complex FeFe Hydrogenase, the Electron-Bifurcating Hnd From Desulfovibrio fructosovorans.},
author = {Jacq-Bailly A, Benvenuti M, Payne N, Kpebe A, Felbek C, Fourmond V, Leger C, Brugna M, Baffert C.},
journal = {Front Chem},
year = {2020},
doi = {10.3389/fchem.2020.573305},
pmid = {33490032}
}
@article{lin104852,
title = {Energy Conservation in the Acetogenic Bacterium Clostridium aceticum.},
author = {Wiechmann A, Muller V.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9020258},
pmid = {33513854}
}
@article{lin105011,
title = {A safety cap protects hydrogenase from oxygen attack.},
author = {Winkler M, Duan J, Rutz A, Felbek C, Scholtysek L, Lampret O, Jaenecke J, Apfel UP, Gilardi G, Valetti F, Fourmond V, Hofmann E, Leger C, Happe T.},
journal = {Nat Commun},
year = {2021},
doi = {10.1038/s41467-020-20861-2},
pmid = {33531463}
}
@article{lin104930,
title = {Online monitoring applying the anaerobic respiratory monitoring system reveals iron(II) limitation in YTF medium for Clostridium ljungdahlii.},
author = {Mann M, Wittke D, Buchs J.},
journal = {Eng Life Sci},
year = {2021},
doi = {10.1002/elsc.202000054},
pmid = {33531887}
}
@article{lin104837,
title = {Unexpected diversity of ferredoxin-dependent thioredoxin reductases in cyanobacteria.},
author = {Buey RM, Fernandez-Justel D, Gonzalez-Holgado G, Martinez-Julvez M, Gonzalez-Lopez A, Velazquez-Campoy A, Medina M, Buchanan BB, Balsera M.},
journal = {Plant Physiol},
year = {2021},
doi = {10.1093/plphys/kiab072},
pmid = {33599267}
}
@article{lin104571,
title = {Degradation of the low-calorie sugar substitute 5-ketofructose by different bacteria.},
author = {Schiessl J, Kosciow K, Garschagen LS, Hoffmann JJ, Heymuth J, Franke T, Deppenmeier U.},
journal = {Appl Microbiol Biotechnol},
year = {2021},
doi = {10.1007/s00253-021-11168-3},
pmid = {33616697}
}
@article{lin104700,
title = {Following Electroenzymatic Hydrogen Production by Rotating Ring-Disk Electrochemistry and Mass Spectrometry*.},
author = {Khushvakov J, Nussbaum R, Cadoux C, Duan J, Stripp ST, Milton RD.},
journal = {Angew Chem Int Ed Engl},
year = {2021},
doi = {10.1002/anie.202100863},
pmid = {33630389}
}
@article{lin104569,
title = {Metabolomic and kinetic investigations on the electricity-aided production of butanol by Clostridium pasteurianum strains.},
author = {Arbter P, Sabra W, Utesch T, Hong Y, Zeng AP.},
journal = {Eng Life Sci},
year = {2021},
doi = {10.1002/elsc.202000035},
pmid = {33716617}
}
@article{lin104797,
title = {Investigation of the Ferredoxin's Influence on the Anaerobic and Aerobic, Enzymatic H2 Production.},
author = {Koo J, Cha Y.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.641305},
pmid = {33718343}
}
@article{lin104593,
title = {High Diversity and Functional Potential of Undescribed "Acidobacteriota" in Danish Wastewater Treatment Plants.},
author = {Kristensen JM, Singleton C, Clegg LA, Petriglieri F, Nielsen PH.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.643950},
pmid = {33967982}
}
@article{lin104808,
title = {Association of gestational diabetes mellitus with changes in gut microbiota composition at the species level.},
author = {Chen F, Gan Y, Li Y, He W, Wu W, Wang K, Li Q.},
journal = {BMC Microbiol},
year = {2021},
doi = {10.1186/s12866-021-02207-0},
pmid = {33990174}
}
@article{lin104877,
title = {Mechanistic Aspects of Microbe-Mediated Nanoparticle Synthesis.},
author = {Ghosh S, Ahmad R, Banerjee K, AlAjmi MF, Rahman S.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.638068},
pmid = {34025600}
}
@article{lin104747,
title = {Mimicking the Electron Transport Chain and Active Site of [FeFe] Hydrogenases in One Metal-Organic Framework: Factors That Influence Charge Transport.},
author = {Castner AT, Johnson BA, Cohen SM, Ott S.},
journal = {J Am Chem Soc},
year = {2021},
doi = {10.1021/jacs.1c01361},
pmid = {34029060}
}
@article{lin104941,
title = {Development of Clostridium saccharoperbutylacetonicum as a Whole Cell Biocatalyst for Production of Chirally Pure (R)-1,3-Butanediol.},
author = {Grosse-Honebrink A, Little GT, Bean Z, Heldt D, Cornock RHM, Winzer K, Minton NP, Green E, Zhang Y.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.659895},
pmid = {34055760}
}
@article{lin105088,
title = {Characterization of a putative sensory [FeFe]-hydrogenase provides new insight into the role of the active site architecture.},
author = {Land H, Sekretareva A, Huang P, Redman HJ, Nemeth B, Polidori N, Meszaros LS, Senger M, Stripp ST, Berggren G.},
journal = {Chem Sci},
year = {2020},
doi = {10.1039/d0sc03319g},
pmid = {34094474}
}
@article{lin104570,
title = {Quantitative Bioreactor Monitoring of Intracellular Bacterial Metabolites in Clostridium autoethanogenum Using Liquid Chromatography-Isotope Dilution Mass Spectrometry.},
author = {Safo L, Abdelrazig S, Grosse-Honebrink A, Millat T, Henstra AM, Norman R, Thomas NR, Winzer K, Minton NP, Kim DH, Barrett DA.},
journal = {ACS Omega},
year = {2021},
doi = {10.1021/acsomega.0c05588},
pmid = {34095647}
}
@article{lin105112,
title = {Genome analysis to decipher syntrophy in the bacterial consortium 'SCP' for azo dye degradation.},
author = {Nanjani S, Paul D, Keharia H.},
journal = {BMC Microbiol},
year = {2021},
doi = {10.1186/s12866-021-02236-9},
pmid = {34116639}
}
@article{lin104737,
title = {A novel downstream process for highly pure 1,3-propanediol from an efficient fed-batch fermentation of raw glycerol by Clostridium pasteurianum.},
author = {Zhang C, Sharma S, Wang W, Zeng AP.},
journal = {Eng Life Sci},
year = {2021},
doi = {10.1002/elsc.202100012},
pmid = {34140846}
}
@article{lin105178,
title = {A transferrable and integrative type I-F Cascade for heterologous genome editing and transcription modulation.},
author = {Xu Z, Li Y, Cao H, Si M, Zhang G, Woo PCY, Yan A.},
journal = {Nucleic Acids Res},
year = {2021},
doi = {10.1093/nar/gkab521},
pmid = {34157103}
}
@article{lin370095,
title = {The Influence of Ripeness on the Phenolic Content, Antioxidant and Antimicrobial Activities of Pumpkins (Cucurbita moschata Duchesne).},
author = {Mokhtar M, Bouamar S, Di Lorenzo A, Temporini C, Daglia M, Riazi A.},
journal = {Molecules},
year = {2021},
doi = {10.3390/molecules26123623},
pmid = {34199320}
}
@article{lin370101,
title = {Bio-Preservative Potential of Microorganisms Isolated from Red Grape against Food Contaminant Fungi.},
author = {Dopazo V, Luz C, Manes J, Quiles JM, Carbonell R, Calpe J, Meca G.},
journal = {Toxins (Basel)},
year = {2021},
doi = {10.3390/toxins13060412},
pmid = {34200813}
}
@article{lin104841,
title = {High Performance of Biohydrogen Production in Packed-Filter Bioreactor via Optimizing Packed-Filter Position.},
author = {Chu CY, Zheng JL, Chen TH, Bhuyar P.},
journal = {Int J Environ Res Public Health},
year = {2021},
doi = {10.3390/ijerph18147462},
pmid = {34299912}
}
@article{lin104905,
title = {Capture of carbon dioxide and hydrogen by engineered Escherichia coli: hydrogen-dependent CO2 reduction to formate.},
author = {Leo F, Schwarz FM, Schuchmann K, Muller V.},
journal = {Appl Microbiol Biotechnol},
year = {2021},
doi = {10.1007/s00253-021-11463-z},
pmid = {34331557}
}
@article{lin104693,
title = {Enhancement of magnetic field on fermentative hydrogen production by Clostridium pasteurianum.},
author = {Chen L, Zhang K, Wang M, Zhang Z, Feng Y.},
journal = {Bioresour Technol},
year = {2021},
doi = {10.1016/j.biortech.2021.125764},
pmid = {34438289}
}
@article{lin104830,
title = {Comparative genomic analysis reveals metabolic flexibility of Woesearchaeota.},
author = {Huang WC, Liu Y, Zhang X, Zhang CJ, Zou D, Zheng S, Xu W, Luo Z, Liu F, Li M.},
journal = {Nat Commun},
year = {2021},
doi = {10.1038/s41467-021-25565-9},
pmid = {34489402}
}
@article{lin104745,
title = {Electrochemical control of [FeFe]-hydrogenase single crystals reveals complex redox populations at the catalytic site.},
author = {Morra S, Duan J, Winkler M, Ash PA, Happe T, Vincent KA.},
journal = {Dalton Trans},
year = {2021},
doi = {10.1039/d1dt02219a},
pmid = {34545877}
}
@article{lin104599,
title = {A Heterodimeric Reduced-Ferredoxin-Dependent Methylenetetrahydrofolate Reductase from Syngas-Fermenting Clostridium ljungdahlii.},
author = {Yi J, Huang H, Liang J, Wang R, Liu Z, Li F, Wang S.},
journal = {Microbiol Spectr},
year = {2021},
doi = {10.1128/spectrum.00958-21},
pmid = {34643446}
}
@article{lin104950,
title = {Electron carriers involved in autotrophic and heterotrophic acetogenesis in the thermophilic bacterium Thermoanaerobacter kivui.},
author = {Katsyv A, Jain S, Basen M, Muller V.},
journal = {Extremophiles},
year = {2021},
doi = {10.1007/s00792-021-01247-8},
pmid = {34647163}
}
@article{lin104845,
title = {Citrulline deiminase pathway provides ATP and boosts growth of Clostridium carboxidivorans P7.},
author = {Li X, Han R, Bao T, Osire T, Zhang X, Xu M, Yang T, Rao Z.},
journal = {Biotechnol Biofuels},
year = {2021},
doi = {10.1186/s13068-021-02051-4},
pmid = {34656154}
}
@article{lin104803,
title = {The Nonphysiological Reductant Sodium Dithionite and [FeFe] Hydrogenase: Influence on the Enzyme Mechanism.},
author = {Martini MA, Rudiger O, Breuer N, Noring B, DeBeer S, Rodriguez-Macia P, Birrell JA.},
journal = {J Am Chem Soc},
year = {2021},
doi = {10.1021/jacs.1c07322},
pmid = {34668697}
}
@article{lin104759,
title = {Microbial Lipopeptide-Producing Strains and Their Metabolic Roles under Anaerobic Conditions.},
author = {Li JY, Wang L, Liu YF, Zhou L, Gang HZ, Liu JF, Yang SZ, Mu BZ.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9102030},
pmid = {34683351}
}
@article{lin105132,
title = {Immobilization of functional nano-objects in living engineered bacterial biofilms for catalytic applications.},
author = {Wang X, Pu J, Liu Y, Ba F, Cui M, Li K, Xie Y, Nie Y, Mi Q, Li T, Liu L, Zhu M, Zhong C.},
journal = {Natl Sci Rev},
year = {2019},
doi = {10.1093/nsr/nwz104},
pmid = {34691954}
}
@article{lin104913,
title = {Diversification of Ferredoxins across Living Organisms.},
author = {Nzuza N, Padayachee T, Chen W, Gront D, Nelson DR, Syed K.},
journal = {Curr Issues Mol Biol},
year = {2021},
doi = {10.3390/cimb43030098},
pmid = {34698119}
}
@article{lin104753,
title = {Crystal structure of the [2Fe-2S] protein I (Shethna protein I) from Azotobacter vinelandii.},
author = {Kabasakal BV, Cotton CAR, Murray JW.},
journal = {Acta Crystallogr F Struct Biol Commun},
year = {2021},
doi = {10.1107/s2053230x21009936},
pmid = {34726179}
}
@article{lin104981,
title = {The crystalline state as a dynamic system: IR microspectroscopy under electrochemical control for a [NiFe] hydrogenase.},
author = {Ash PA, Kendall-Price SET, Evans RM, Carr SB, Brasnett AR, Morra S, Rowbotham JS, Hidalgo R, Healy AJ, Cinque G, Frogley MD, Armstrong FA, Vincent KA.},
journal = {Chem Sci},
year = {2021},
doi = {10.1039/d1sc01734a},
pmid = {34745526}
}
@article{lin104884,
title = {Structural and Biochemical Characterization of Thioredoxin-2 from Deinococcus radiodurans.},
author = {Kim MK, Zhao L, Jeong S, Zhang J, Jung JH, Seo HS, Choi JI, Lim S.},
journal = {Antioxidants (Basel)},
year = {2021},
doi = {10.3390/antiox10111843},
pmid = {34829714}
}
@article{lin104895,
title = {The monofunctional CO dehydrogenase CooS is essential for growth of Thermoanaerobacter kivui on carbon monoxide.},
author = {Jain S, Katsyv A, Basen M, Muller V.},
journal = {Extremophiles},
year = {2021},
doi = {10.1007/s00792-021-01251-y},
pmid = {34919167}
}
@article{lin104695,
title = {Mechanisms underlying Clostridium pasteurianum's metabolic shift when grown with Geobacter sulfurreducens.},
author = {Berthomieu R, Perez-Bernal MF, Santa-Catalina G, Desmond-Le Quemener E, Bernet N, Trably E.},
journal = {Appl Microbiol Biotechnol},
year = {2022},
doi = {10.1007/s00253-021-11736-7},
pmid = {34939136}
}
@article{lin104894,
title = {Highly efficient genome editing in Xanthomonas oryzae pv. oryzae through repurposing the endogenous type I-C CRISPR-Cas system.},
author = {Jiang D, Zhang D, Li S, Liang Y, Zhang Q, Qin X, Gao J, Qiu JL.},
journal = {Mol Plant Pathol},
year = {2022},
doi = {10.1111/mpp.13178},
pmid = {34954876}
}
@article{lin104945,
title = {Improvement of glycine biosynthesis from one-carbon compounds and ammonia catalyzed by the glycine cleavage system in vitro.},
author = {Xu Y, Ren J, Wang W, Zeng AP.},
journal = {Eng Life Sci},
year = {2022},
doi = {10.1002/elsc.202100047},
pmid = {35024026}
}
@article{lin104717,
title = {Phenotype analysis of cultivation processes via unsupervised machine learning: Demonstration for Clostridium pasteurianum.},
author = {Hong Y, Nguyen T, Arbter P, Utesch T, Zeng AP.},
journal = {Eng Life Sci},
year = {2022},
doi = {10.1002/elsc.202100114},
pmid = {35140556}
}
@article{lin104868,
title = {Microbial Fuel Cell Based on Nitrogen-Fixing Rhizobium anhuiense Bacteria.},
author = {Zalneravicius R, Paskevicius A, Samukaite-Bubniene U, Ramanavicius S, Vilkiene M, Mockeviciene I, Ramanavicius A.},
journal = {Biosensors (Basel)},
year = {2022},
doi = {10.3390/bios12020113},
pmid = {35200373}
}
@article{lin104585,
title = {Antimicrobial Potential of the Genera Geobacillus and Parageobacillus, as Well as Endolysins Biosynthesized by Their Bacteriophages.},
author = {Zebrowska J, Witkowska M, Struck A, Laszuk PE, Raczuk E, Ponikowska M, Skowron PM, Zylicz-Stachula A.},
journal = {Antibiotics (Basel)},
year = {2022},
doi = {10.3390/antibiotics11020242},
pmid = {35203843}
}
@article{lin104692,
title = {Strain evolution and novel downstream processing with integrated catalysis enable highly efficient coproduction of 1,3-propanediol and organic acid esters from crude glycerol.},
author = {Zhang C, Sharma S, Ma C, Zeng AP.},
journal = {Biotechnol Bioeng},
year = {2022},
doi = {10.1002/bit.28070},
pmid = {35234295}
}
@article{lin104740,
title = {Fantastic [FeFe]-Hydrogenases and Where to Find Them.},
author = {Morra S.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.853626},
pmid = {35308355}
}
@article{lin104996,
title = {Increased Butyrate Production in Clostridium saccharoperbutylacetonicum from Lignocellulose-Derived Sugars.},
author = {Baur ST, Markussen S, Di Bartolomeo F, Poehlein A, Baker A, Jenkinson ER, Daniel R, Wentzel A, Durre P.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.02419-21},
pmid = {35311509}
}
@article{lin104862,
title = {A Novel NADP-Dependent Formate Dehydrogenase From the Hyperthermophilic Archaeon Thermococcus onnurineus NA1.},
author = {Yang JI, Lee SH, Ryu JY, Lee HS, Kang SG.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.844735},
pmid = {35369452}
}
@article{lin104992,
title = {Development and characterization of a glycine biosensor system for fine-tuned metabolic regulation in Escherichia coli.},
author = {Hong KQ, Zhang J, Jin B, Chen T, Wang ZW.},
journal = {Microb Cell Fact},
year = {2022},
doi = {10.1186/s12934-022-01779-4},
pmid = {35392910}
}
@article{lin104818,
title = {Putative Nickel-Dependent Anaerobic Carbon Monoxide Uptake Occurs Commonly in Soils and Sediments at Ambient Temperature and Might Contribute to Atmospheric and Sub-Atmospheric Carbon Monoxide Uptake During Anoxic Conditions.},
author = {DePoy AN, King GM.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.736189},
pmid = {35401450}
}
@article{lin105105,
title = {Benchmark Study of Redox Potential Calculations for Iron-Sulfur Clusters in Proteins.},
author = {Jafari S, Tavares Santos YA, Bergmann J, Irani M, Ryde U.},
journal = {Inorg Chem},
year = {2022},
doi = {10.1021/acs.inorgchem.1c03422},
pmid = {35403427}
}
@article{lin104701,
title = {Influence of Processing Parameters and Natural Antimicrobial on Alicyclobacillus acidoterrestris and Clostridium pasteurianum Using Response Surface Methodology.},
author = {Hadj Saadoun J, Levante A, Marrella M, Bernini V, Neviani E, Lazzi C.},
journal = {Foods},
year = {2022},
doi = {10.3390/foods11071063},
pmid = {35407149}
}
@article{lin370086,
title = {Phenotypic and Genotypic Characterization of C. perfringens Isolates from Dairy Cows with a Pathological Puerperium.},
author = {Kronfeld H, Kemper N, Holzel CS.},
journal = {Vet Sci},
year = {2022},
doi = {10.3390/vetsci9040173},
pmid = {35448671}
}
@article{lin104944,
title = {Activation of a passive, mesoporous silica nanoparticle layer through attachment of bacterially-derived carbon-quantum-dots for protection and functional enhancement of probiotics.},
author = {Wei H, Geng W, Yang XY, Kuipers J, van der Mei HC, Busscher HJ.},
journal = {Mater Today Bio},
year = {2022},
doi = {10.1016/j.mtbio.2022.100293},
pmid = {35634173}
}
@article{lin104979,
title = {Iron-regulated assembly of the cytosolic iron-sulfur cluster biogenesis machinery.},
author = {Fan X, Barshop WD, Vashisht AA, Pandey V, Leal S, Rayatpisheh S, Jami-Alahmadi Y, Sha J, Wohlschlegel JA.},
journal = {J Biol Chem},
year = {2022},
doi = {10.1016/j.jbc.2022.102094},
pmid = {35654137}
}
@article{lin104848,
title = {A site-differentiated [4Fe-4S] cluster controls electron transfer reactivity of Clostridium acetobutylicum [FeFe]-hydrogenase I.},
author = {Lubner CE, Artz JH, Mulder DW, Oza A, Ward RJ, Williams SG, Jones AK, Peters JW, Smalyukh II, Bharadwaj VS, King PW.},
journal = {Chem Sci},
year = {2022},
doi = {10.1039/d1sc07120c},
pmid = {35656134}
}
@article{lin104824,
title = {Histidine Ligated Iron-Sulfur Peptides.},
author = {Valer L, Rossetto D, Parkkila T, Sebastianelli L, Guella G, Hendricks AL, Cowan JA, Sang L, Mansy SS.},
journal = {Chembiochem},
year = {2022},
doi = {10.1002/cbic.202200202},
pmid = {35674331}
}
@article{lin104866,
title = {Nitrogen fixation by diverse diazotrophic communities can support population growth of arboreal ants.},
author = {Nepel M, Pfeifer J, Oberhauser FB, Richter A, Woebken D, Mayer VE.},
journal = {BMC Biol},
year = {2022},
doi = {10.1186/s12915-022-01289-0},
pmid = {35681192}
}
@article{lin104898,
title = {A Third Way of Energy Conservation in Acetogenic Bacteria.},
author = {Kremp F, Roth J, Muller V.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.01385-22},
pmid = {35699467}
}
@article{lin370097,
title = {Comparative Genomics Provides Insights Into Genetic Diversity of Clostridium tyrobutyricum and Potential Implications for Late Blowing Defects in Cheese.},
author = {Podrzaj L, Burtscher J, Domig KJ.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.889551},
pmid = {35722315}
}
@article{lin104850,
title = {A Cytoplasmic NAD(P)H-Dependent Polysulfide Reductase with Thiosulfate Reductase Activity from the Hyperthermophilic Bacterium Thermotoga maritima.},
author = {Liang J, Huang H, Wang Y, Li L, Yi J, Wang S.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.00436-22},
pmid = {35762779}
}
@article{lin104936,
title = {5-Keto-D-Fructose, a Natural Diketone and Potential Sugar Substitute, Significantly Reduces the Viability of Prokaryotic and Eukaryotic Cells.},
author = {Hovels M, Gallala N, Keriakes SL, Konig AP, Schiessl J, Laporte T, Kosciow K, Deppenmeier U.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.935062},
pmid = {35801101}
}
@article{lin104802,
title = {Exploiting the Type I-B CRISPR Genome Editing System in Thermoanaerobacterium aotearoense SCUT27 and Engineering the Strain for Enhanced Ethanol Production.},
author = {Dai K, Fu H, Guo X, Qu C, Lan Y, Wang J.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.00751-22},
pmid = {35862665}
}
@article{lin104857,
title = {Promotion of Nitrogen Fixation of Diverse Heterotrophs by Solid-Phase Humin.},
author = {Dey S, Kasai T, Katayama A.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.853411},
pmid = {35992702}
}
@article{lin104773,
title = {Structural insight on the mechanism of an electron-bifurcating [FeFe] hydrogenase.},
author = {Furlan C, Chongdar N, Gupta P, Lubitz W, Ogata H, Blaza JN, Birrell JA.},
journal = {Elife},
year = {2022},
doi = {10.7554/elife.79361},
pmid = {36018003}
}
@article{lin104839,
title = {Genome-Resolved Metagenomics Informs the Functional Ecology of Uncultured Acidobacteria in Redox Oscillated Sphagnum Peat.},
author = {Reji L, Zhang X.},
journal = {mSystems},
year = {2022},
doi = {10.1128/msystems.00055-22},
pmid = {36036503}
}
@article{lin104567,
title = {Control of redox potential in a novel continuous bioelectrochemical system led to remarkable metabolic and energetic responses of Clostridium pasteurianum grown on glycerol.},
author = {Arbter P, Widderich N, Utesch T, Hong Y, Zeng AP.},
journal = {Microb Cell Fact},
year = {2022},
doi = {10.1186/s12934-022-01902-5},
pmid = {36050762}
}
@article{lin105031,
title = {Interaction of the Nanoparticles and Plants in Selective Growth Stages-Usual Effects and Resulting Impact on Usage Perspectives.},
author = {Wohlmuth J, Tekielska D, Cechova J, Baranek M.},
journal = {Plants (Basel)},
year = {2022},
doi = {10.3390/plants11182405},
pmid = {36145807}
}
@article{lin104828,
title = {The Contribution of Proton-Donor pKa on Reactivity Profiles of [FeFe]-hydrogenases.},
author = {Kisgeropoulos EC, Bharadwaj VS, Mulder DW, King PW.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.903951},
pmid = {36246213}
}
@article{lin370094,
title = {Effect of Polydextrose on the Growth of Pediococcus pentosaceus as Well as Lactic Acid and Bacteriocin-like Inhibitory Substances (BLIS) Production.},
author = {Wanderley Porto MC, de Souza de Azevedo PO, Lourenco FR, Converti A, Vitolo M, Oliveira RPS.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10101898},
pmid = {36296175}
}
@article{lin370092,
title = {Nutritional composition, heavy metal content and in vitro effect on the human gut microbiota of Talitrus saltator, an underutilized crustacean from the Atlantic coast.},
author = {Lopez-Santamarina A, Cardelle-Cobas A, Lamas A, Mondragon-Portocarrero A, Cepeda A, Miranda JM.},
journal = {Front Nutr},
year = {2022},
doi = {10.3389/fnut.2022.943133},
pmid = {36313116}
}
@article{lin104902,
title = {Frequent Occurrence and Metabolic Versatility of Marinifilaceae Bacteria as Key Players in Organic Matter Mineralization in Global Deep Seas.},
author = {Li J, Dong C, Lai Q, Wang G, Shao Z.},
journal = {mSystems},
year = {2022},
doi = {10.1128/msystems.00864-22},
pmid = {36342154}
}
@article{lin370091,
title = {Secondary Metabolite Profile and Pharmacological Opportunities of Lettuce Plants following Selenium and Sulfur Enhancement.},
author = {Abdalla MA, Famuyide I, Wooding M, McGaw LJ, Muhling KH.},
journal = {Pharmaceutics},
year = {2022},
doi = {10.3390/pharmaceutics14112267},
pmid = {36365086}
}
@article{lin104804,
title = {A novel and improved selective media for the isolation and enumeration of Klebsiella species.},
author = {Prasad M, Shetty SK, Nair BG, Pal S, Madhavan A.},
journal = {Appl Microbiol Biotechnol},
year = {2022},
doi = {10.1007/s00253-022-12270-w},
pmid = {36380193}
}
@article{lin104838,
title = {Nickel-Cobalt Oxide Nanoparticle-Induced Biohydrogen Production.},
author = {Li Z, Wang J, Tian K, Zhou C, Pei Y, Zhang J, Zang L.},
journal = {ACS Omega},
year = {2022},
doi = {10.1021/acsomega.2c05580},
pmid = {36406540}
}
@article{lin104819,
title = {Inhibitory Effect of Select Nitrocompounds and Chlorate against Yersinia ruckeri and Yersinia aleksiciae In Vitro.},
author = {Latham EA, Anderson RC, Wottlin LR, Poole TL, Crippen TL, Schlosser WD, Harvey RB, Hume ME.},
journal = {Pathogens},
year = {2022},
doi = {10.3390/pathogens11111381},
pmid = {36422632}
}
@article{lin104720,
title = {Cyanide Binding to [FeFe]-Hydrogenase Stabilizes the Alternative Configuration of the Proton Transfer Pathway.},
author = {Duan J, Hemschemeier A, Burr DJ, Stripp ST, Hofmann E, Happe T.},
journal = {Angew Chem Int Ed Engl},
year = {2023},
doi = {10.1002/anie.202216903},
pmid = {36464641}
}
@article{lin105102,
title = {Ammonia from dinitrogen at ambient conditions by organometallic catalysts.},
author = {Bora D, Gayen FR, Saha B.},
journal = {RSC Adv},
year = {2022},
doi = {10.1039/d2ra06156b},
pmid = {36505716}
}
@article{lin104771,
title = {Comparison of two acidophilic sulfidogenic consortia for the treatment of acidic mine water.},
author = {Frederico TD, Nancucheo I, Santos WCB, Oliveira RRM, Buzzi DC, Pires ES, Silva PMP, Lucheta AR, Alves JO, de Oliveira GC, Bitencourt JAP.},
journal = {Front Bioeng Biotechnol},
year = {2022},
doi = {10.3389/fbioe.2022.1048412},
pmid = {36524050}
}
@article{lin105254,
title = {Enzymatic and Microbial Electrochemistry: Approaches and Methods.},
author = {Bedendi G, De Moura Torquato LD, Webb S, Cadoux C, Kulkarni A, Sahin S, Maroni P, Milton RD, Grattieri M.},
journal = {ACS Meas Sci Au},
year = {2022},
doi = {10.1021/acsmeasuresciau.2c00042},
pmid = {36573075}
}
@article{lin370096,
title = {Synthesis and antimicrobial activity of aminoalkyl resveratrol derivatives inspired by cationic peptides.},
author = {Cebrian R, Lucas R, Fernandez-Cantos MV, Slot K, Penalver P, Martinez-Garcia M, Parraga-Leo A, de Paz MV, Garcia F, Kuipers OP, Morales JC.},
journal = {J Enzyme Inhib Med Chem},
year = {2023},
doi = {10.1080/14756366.2022.2146685},
pmid = {36600674}
}
@article{lin104627,
title = {Single and multiplexed gene repression in solventogenic Clostridium via Cas12a-based CRISPR interference.},
author = {Joseph RC, Sandoval NR.},
journal = {Synth Syst Biotechnol},
year = {2023},
doi = {10.1016/j.synbio.2022.12.005},
pmid = {36687471}
}
@article{lin104724,
title = {Facile Functionalization of Carbon Electrodes for Efficient Electroenzymatic Hydrogen Production.},
author = {Liu Y, Webb S, Moreno-Garcia P, Kulkarni A, Maroni P, Broekmann P, Milton RD.},
journal = {JACS Au},
year = {2023},
doi = {10.1021/jacsau.2c00551},
pmid = {36711103}
}
@article{lin104812,
title = {Increasing the O2 Resistance of the [FeFe]-Hydrogenase CbA5H through Enhanced Protein Flexibility.},
author = {Rutz A, Das CK, Fasano A, Jaenecke J, Yadav S, Apfel UP, Engelbrecht V, Fourmond V, Leger C, Schafer LV, Happe T.},
journal = {ACS Catal},
year = {2023},
doi = {10.1021/acscatal.2c04031},
pmid = {36733639}
}
@article{lin104573,
title = {Developing a genetic engineering method for Acetobacterium wieringae to expand one-carbon valorization pathways.},
author = {Moreira JPC, Heap JT, Alves JI, Domingues L.},
journal = {Biotechnol Biofuels Bioprod},
year = {2023},
doi = {10.1186/s13068-023-02259-6},
pmid = {36788587}
}
@article{lin104911,
title = {Molecular Basis of the Electron Bifurcation Mechanism in the [FeFe]-Hydrogenase Complex HydABC.},
author = {Katsyv A, Kumar A, Saura P, Poverlein MC, Freibert SA, T Stripp S, Jain S, Gamiz-Hernandez AP, Kaila VRI, Muller V, Schuller JM.},
journal = {J Am Chem Soc},
year = {2023},
doi = {10.1021/jacs.2c11683},
pmid = {36811855}
}
@article{lin370089,
title = {Preparation of Sourdoughs Fermented with Isolated Lactic Acid Bacteria and Characterization of Their Antifungal Properties.},
author = {Lafuente C, Calpe J, Musto L, Nazareth TM, Dopazo V, Meca G, Luz C.},
journal = {Foods},
year = {2023},
doi = {10.3390/foods12040686},
pmid = {36832761}
}
@article{lin104985,
title = {The Mechanism of Metal-Containing Formate Dehydrogenases Revisited: The Formation of Bicarbonate as Product Intermediate Provides Evidence for an Oxygen Atom Transfer Mechanism.},
author = {Kumar H, Khosraneh M, Bandaru SSM, Schulzke C, Leimkuhler S.},
journal = {Molecules},
year = {2023},
doi = {10.3390/molecules28041537},
pmid = {36838526}
}
@article{lin104751,
title = {Binding of exogenous cyanide reveals new active-site states in [FeFe] hydrogenases.},
author = {Martini MA, Bikbaev K, Pang Y, Lorent C, Wiemann C, Breuer N, Zebger I, DeBeer S, Span I, Bjornsson R, Birrell JA, Rodriguez-Macia P.},
journal = {Chem Sci},
year = {2023},
doi = {10.1039/d2sc06098a},
pmid = {36937599}
}
@article{lin104816,
title = {New Insights into the Physiology of the Propionate Producers Anaerotignum propionicum and Anaerotignum neopropionicum (Formerly Clostridium propionicum and Clostridium neopropionicum).},
author = {Baur T, Durre P.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11030685},
pmid = {36985257}
}
@article{lin104559,
title = {Heterologous 1,3-Propanediol Production Using Different Recombinant Clostridium beijerinckii DSM 6423 Strains.},
author = {Schoch T, Baur T, Kunz J, Stoferle S, Durre P.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11030784},
pmid = {36985357}
}
@article{lin105069,
title = {Understanding the Electronic Structure Basis for N2 Binding to FeMoco: A Systematic Quantum Mechanics/Molecular Mechanics Investigation.},
author = {Pang Y, Bjornsson R.},
journal = {Inorg Chem},
year = {2023},
doi = {10.1021/acs.inorgchem.2c03967},
pmid = {36988551}
}
@article{lin104833,
title = {Redox tuning of the H-cluster by second coordination sphere amino acids in the sensory [FeFe] hydrogenase from Thermotoga maritima.},
author = {Chongdar N, Rodriguez-Macia P, Reijerse EJ, Lubitz W, Ogata H, Birrell JA.},
journal = {Chem Sci},
year = {2023},
doi = {10.1039/d2sc06432d},
pmid = {37006680}
}
@article{lin104781,
title = {Antibiotic resistance in Neisseria gonorrhoeae: broad-spectrum drug target identification using subtractive genomics.},
author = {Omeershffudin UNM, Kumar S.},
journal = {Genomics Inform},
year = {2023},
doi = {10.5808/gi.22066},
pmid = {37037463}
}
@article{lin104903,
title = {An essential role of the reversible electron-bifurcating hydrogenase Hnd for ethanol oxidation in Solidesulfovibrio fructosivorans.},
author = {Kpebe A, Guendon C, Payne N, Ros J, Khelil Berbar M, Lebrun R, Baffert C, Shintu L, Brugna M.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1139276},
pmid = {37051519}
}
@article{lin104847,
title = {Continuous Production of Ethanol, 1-Butanol and 1-Hexanol from CO with a Synthetic Co-Culture of Clostridia Applying a Cascade of Stirred-Tank Bioreactors.},
author = {Baumler M, Burgmaier V, Herrmann F, Mentges J, Schneider M, Ehrenreich A, Liebl W, Weuster-Botz D.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11041003},
pmid = {37110426}
}
@article{lin104761,
title = {Designed Rubredoxin miniature in a fully artificial electron chain triggered by visible light.},
author = {Chino M, Di Costanzo LF, Leone L, La Gatta S, Famulari A, Chiesa M, Lombardi A, Pavone V.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-37941-8},
pmid = {37185349}
}
@article{lin104560,
title = {A (S)-3-Hydroxybutyrate Dehydrogenase Belonging to the 3-Hydroxyacyl-CoA Dehydrogenase Family Facilitates Hydroxyacid Degradation in Anaerobic Bacteria.},
author = {Zhou Y, Wei Y, Jiang L, Zhang Y, Jiao X.},
journal = {Appl Environ Microbiol},
year = {2023},
doi = {10.1128/aem.00366-23},
pmid = {37255440}
}
@article{lin104776,
title = {Exploitation of a Type 1 Toxin-Antitoxin System as an Inducible Counter-Selective Marker for Genome Editing in the Acetogen Eubacterium limosum.},
author = {Millard J, Agius A, Zhang Y, Soucaille P, Minton NP.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11051256},
pmid = {37317230}
}
@article{lin104772,
title = {Arsenite Methyltransferase Diversity and Optimization of Methylation Efficiency.},
author = {Chen J, Rosen BP.},
journal = {Environ Sci Technol},
year = {2023},
doi = {10.1021/acs.est.3c00966},
pmid = {37327778}
}
@article{lin104972,
title = {Endogenous CRISPR/Cas systems for genome engineering in the acetogens Acetobacterium woodii and Clostridium autoethanogenum.},
author = {Poulalier-Delavelle M, Baker JP, Millard J, Winzer K, Minton NP.},
journal = {Front Bioeng Biotechnol},
year = {2023},
doi = {10.3389/fbioe.2023.1213236},
pmid = {37425362}
}
@article{lin104687,
title = {Hydrogen online monitoring based on thermal conductivity for anaerobic microorganisms.},
author = {Miebach K, Finger M, Scherer AMK, Maass CA, Buchs J.},
journal = {Biotechnol Bioeng},
year = {2023},
doi = {10.1002/bit.28502},
pmid = {37462090}
}
@article{lin104878,
title = {Base editing enables duplex point mutagenesis in Clostridium autoethanogenum at the price of numerous off-target mutations.},
author = {Seys FM, Humphreys CM, Tomi-Andrino C, Li Q, Millat T, Yang S, Minton NP.},
journal = {Front Bioeng Biotechnol},
year = {2023},
doi = {10.3389/fbioe.2023.1211197},
pmid = {37496853}
}
@article{lin370103,
title = {Unprecedented Antimicrobial and Cytotoxic Polyketides from Cultures of Diaporthe africana sp. nov.},
author = {Matio Kemkuignou B, Lambert C, Stadler M, Kouam Fogue S, Marin-Felix Y.},
journal = {J Fungi (Basel)},
year = {2023},
doi = {10.3390/jof9070781},
pmid = {37504769}
}
@article{lin104805,
title = {Enhancing 1,3-Propanediol Productivity in the Non-Model Chassis Clostridium beijerinckii through Genetic Manipulation.},
author = {Bortolucci J, Guazzaroni ME, Schoch T, Durre P, Reginatto V.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11071855},
pmid = {37513028}
}
@article{lin104835,
title = {Probing Substrate Transport Effects on Enzymatic Hydrogen Catalysis: An Alternative Proton Transfer Pathway in Putatively Sensory [FeFe] Hydrogenase.},
author = {Cabotaje PR, Walter K, Zamader A, Huang P, Ho F, Land H, Senger M, Berggren G.},
journal = {ACS Catal},
year = {2023},
doi = {10.1021/acscatal.3c02314},
pmid = {37560193}
}
@article{lin370082,
title = {Bioactive Naphtho-alpha-Pyranones from Two Endophytic Fungi of the Genus Polyphilus.},
author = {Wennrich JP, Sepanian E, Ebada SS, Llanos-Lopez NA, Ashrafi S, Maier W, Kurtan T, Stadler M.},
journal = {Antibiotics (Basel)},
year = {2023},
doi = {10.3390/antibiotics12081273},
pmid = {37627693}
}
@article{lin370100,
title = {Enhancement of Textural and Sensory Characteristics of Wheat Bread Using a Chickpea Sourdough Fermented with a Selected Autochthonous Microorganism.},
author = {Nouska C, Hatzikamari M, Matsakidou A, Biliaderis CG, Lazaridou A.},
journal = {Foods},
year = {2023},
doi = {10.3390/foods12163112},
pmid = {37628111}
}
@article{lin104650,
title = {Solvent-Producing Clostridia Revisited.},
author = {Jones DT, Schulz F, Roux S, Brown SD.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11092253},
pmid = {37764097}
}
@article{lin104858,
title = {Engineering Nitrogenases for Synthetic Nitrogen Fixation: From Pathway Engineering to Directed Evolution.},
author = {Bennett EM, Murray JW, Isalan M.},
journal = {Biodes Res},
year = {2023},
doi = {10.34133/bdr.0005},
pmid = {37849466}
}
@article{lin104688,
title = {Insights into the Molecular Mechanism of Formaldehyde Inhibition of [FeFe]-Hydrogenases.},
author = {Duan J, Veliju A, Lampret O, Liu L, Yadav S, Apfel UP, Armstrong FA, Hemschemeier A, Hofmann E.},
journal = {J Am Chem Soc},
year = {2023},
doi = {10.1021/jacs.3c07800},
pmid = {37983562}
}
@article{lin104809,
title = {Extracellular electron uptake from a cathode by the lactic acid bacterium Lactiplantibacillus plantarum.},
author = {Tejedor-Sanz S, Li S, Kundu BB, Ajo-Franklin CM.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1298023},
pmid = {38075918}
}
@article{lin104566,
title = {The Restriction-Modification Systems of Clostridium carboxidivorans P7.},
author = {Kottenhahn P, Philipps G, Bunk B, Sproer C, Jennewein S.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11122962},
pmid = {38138106}
}
@article{lin104786,
title = {Nitrogenase beyond the Resting State: A Structural Perspective.},
author = {Warmack RA, Rees DC.},
journal = {Molecules},
year = {2023},
doi = {10.3390/molecules28247952},
pmid = {38138444}
}
@article{lin104787,
title = {The Alga Uronema belkae Has Two Structural Types of [FeFe]-Hydrogenases with Different Biochemical Properties.},
author = {Alavi G, Engelbrecht V, Hemschemeier A, Happe T.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms242417311},
pmid = {38139142}
}
@article{lin104766,
title = {Genome-scale metabolic model of the versatile bacterium Paracoccus denitrificans Pd1222.},
author = {Bordel S, Martin-Gonzalez D, Borner T, Munoz R, Santos-Beneit F.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.01077-23},
pmid = {38180324}
}
@article{lin370093,
title = {Antibacterial activity of solid surfaces is critically dependent on relative humidity, inoculum volume, and organic soiling.},
author = {Kaur H, Rosenberg M, Kook M, Danilian D, Kisand V, Ivask A.},
journal = {FEMS Microbes},
year = {2024},
doi = {10.1093/femsmc/xtad022},
pmid = {38213394}
}
@article{lin104736,
title = {Production of biological hydrogen from Quinoa residue using dark fermentation and estimation of its microbial diversity.},
author = {Dursun N.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e25018},
pmid = {38314271}
}
@article{lin104586,
title = {A comprehensive review of microbial fuel cells considering materials, methods, structures, and microorganisms.},
author = {Jalili P, Ala A, Nazari P, Jalili B, Ganji DD.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e25439},
pmid = {38371992}
}
@article{lin104564,
title = {Sustainable Production of Biofuels and Biochemicals via Electro-Fermentation Technology.},
author = {Salar-Garcia MJ, Ortiz-Martinez VM, Sanchez-Segado S, Valero Sanchez R, Saez Lopez A, Lozano Blanco LJ, Godinez-Seoane C.},
journal = {Molecules},
year = {2024},
doi = {10.3390/molecules29040834},
pmid = {38398584}
}
@article{lin104778,
title = {Electrofermentation increases concentration of poly gamma-glutamic acid in Bacillus subtilis biofilms.},
author = {Adilkhanova A, Ormantayeva A, Kaziullayeva A, Olaifa K, Eghtesadi N, Abbas AH, Calvio C, Pham TT, Ajunwa OM, Marsili E.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.14426},
pmid = {38497275}
}
@article{lin104718,
title = {Ferredoxin reduction by hydrogen with iron functions as an evolutionary precursor of flavin-based electron bifurcation.},
author = {Brabender M, Henriques Pereira DP, Mrnjavac N, Schlikker ML, Kimura ZI, Sucharitakul J, Kleinermanns K, Tuysuz H, Buckel W, Preiner M, Martin WF.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2318969121},
pmid = {38513105}
}
@article{lin104829,
title = {Emergence of an Orphan Nitrogenase Protein Following Atmospheric Oxygenation.},
author = {Cuevas-Zuviria B, Garcia AK, Rivier AJ, Rucker HR, Carruthers BM, Kacar B.},
journal = {Mol Biol Evol},
year = {2024},
doi = {10.1093/molbev/msae067},
pmid = {38526235}
}
@article{lin104699,
title = {Predicting the Structure of Enzymes with Metal Cofactors: The Example of [FeFe] Hydrogenases.},
author = {Botticelli S, La Penna G, Minicozzi V, Stellato F, Morante S, Rossi G, Faraloni C.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25073663},
pmid = {38612474}
}
@article{lin105023,
title = {Glycerol waste to value added products and its potential applications.},
author = {Chilakamarry CR, Sakinah AMM, Zularisam AW, Pandey A.},
journal = {Syst Microbiol Biomanuf},
year = {2021},
doi = {10.1007/s43393-021-00036-w},
pmid = {38624889}
}
@article{lin104577,
title = {Microbiomes of biohydrogen production from dark fermentation of industrial wastes: current trends, advanced tools and future outlook.},
author = {Dzulkarnain ELN, Audu JO, Wan Dagang WRZ, Abdul-Wahab MF.},
journal = {Bioresour Bioprocess},
year = {2022},
doi = {10.1186/s40643-022-00504-8},
pmid = {38647867}
}
@article{lin104790,
title = {Enhanced enzymatic sugar production from corn stover by combination of water extraction and glycerol-assisted instant catapult steam explosion.},
author = {Wang F, Dong H, Yu W, Gao Y, Mao G, An Y, Xie H, Song A, Zhang Z.},
journal = {Bioresour Bioprocess},
year = {2024},
doi = {10.1186/s40643-024-00739-7},
pmid = {38647976}
}
@article{lin104885,
title = {Customized exogenous ferredoxin functions as an efficient electron carrier.},
author = {Song Z, Wei C, Li C, Gao X, Mao S, Lu F, Qin HM.},
journal = {Bioresour Bioprocess},
year = {2021},
doi = {10.1186/s40643-021-00464-5},
pmid = {38650207}
}
@article{lin104744,
title = {Electrostatic [FeFe]-hydrogenase-carbon nitride assemblies for efficient solar hydrogen production.},
author = {Liu Y, Pulignani C, Webb S, Cobb SJ, Rodriguez-Jimenez S, Kim D, Milton RD, Reisner E.},
journal = {Chem Sci},
year = {2024},
doi = {10.1039/d4sc00640b},
pmid = {38665532}
}
@article{lin104628,
title = {Phylogenomics and genetic analysis of solvent-producing Clostridium species.},
author = {Jensen RO, Schulz F, Roux S, Klingeman DM, Mitchell WP, Udwary D, Morais S, Reynoso V, Winkler J, Nagaraju S, De Tissera S, Shapiro N, Ivanova N, Reddy TBK, Mizrahi I, Utturkar SM, Bayer EA, Woyke T, Mouncey NJ, Jewett MC, Simpson SD, Kopke M, Jones DT, Brown SD.},
journal = {Sci Data},
year = {2024},
doi = {10.1038/s41597-024-03210-6},
pmid = {38693191}
}
@article{lin104783,
title = {Analysis of early intermediate states of the nitrogenase reaction by regularization of EPR spectra.},
author = {Heidinger L, Perez K, Spatzal T, Einsle O, Weber S, Rees DC, Schleicher E.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-48271-8},
pmid = {38740794}
}
@article{lin104897,
title = {Iron-sulfur protein odyssey: exploring their cluster functional versatility and challenging identification.},
author = {Vallieres C, Benoit O, Guittet O, Huang ME, Lepoivre M, Golinelli-Cohen MP, Vernis L.},
journal = {Metallomics},
year = {2024},
doi = {10.1093/mtomcs/mfae025},
pmid = {38744662}
}
@article{lin104685,
title = {Influence of fumarate on interspecies electron transfer and the metabolic shift induced in Clostridium pasteurianum by Geobacter sulfurreducens.},
author = {Perez-Bernal MF, Berthomieu R, Quemener ED, Bernet N, Trably E.},
journal = {J Appl Microbiol},
year = {2024},
doi = {10.1093/jambio/lxae122},
pmid = {38749675}
}
@article{lin104768,
title = {Nonelectroactive clostridium obtains extracellular electron transfer-capability after forming chimera with Geobacter.},
author = {Liu X, Ye Y, Yang N, Cheng C, Rensing C, Jin C, Nealson KH, Zhou S.},
journal = {ISME Commun},
year = {2024},
doi = {10.1093/ismeco/ycae058},
pmid = {38770058}
}
@article{lin104704,
title = {Temperature-dependent iron motion in extremophile rubredoxins - no need for 'corresponding states'.},
author = {Jenney FE, Wang H, George SJ, Xiong J, Guo Y, Gee LB, Marizcurrena JJ, Castro-Sowinski S, Staskiewicz A, Yoda Y, Hu MY, Tamasaku K, Nagasawa N, Li L, Matsuura H, Doukov T, Cramer SP.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-62261-2},
pmid = {38806591}
}
@article{lin104743,
title = {Effect of loading rate and pH on glycerol fermentation and microbial population in an upflow anaerobic filter reactor.},
author = {Cordeiro CN, Rojas P, Veras STS, Kato MT, Florencio L, Sanz JL.},
journal = {Bioprocess Biosyst Eng},
year = {2024},
doi = {10.1007/s00449-024-03003-6},
pmid = {38822157}
}
@article{lin104686,
title = {Recent advancements in wastewater treatment via anaerobic fermentation process: A systematic review.},
author = {Elsayad RM, Sharshir SW, Khalil A, Basha AM.},
journal = {J Environ Manage},
year = {2024},
doi = {10.1016/j.jenvman.2024.121724},
pmid = {38971071}
}
@article{lin104794,
title = {Investigation of the human-gut-kidney axis by fecal proteomics, highlights molecular mechanisms affected in CKD.},
author = {Lohia S, Valkenburg S, Stroggilos R, Lygirou V, Makridakis M, Zoidakis J, Verbeke F, Glorieux G, Vlahou A.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e32828},
pmid = {38975221}
}
@article{lin104789,
title = {Iron-sulphur protein catalysed [4+2] cycloadditions in natural product biosynthesis.},
author = {Zheng Y, Sakai K, Watanabe K, Takagi H, Sato-Shiozaki Y, Misumi Y, Miyanoiri Y, Kurisu G, Nogawa T, Takita R, Takahashi S.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-50142-1},
pmid = {38987535}
}
@article{lin104826,
title = {Propionate production by Bacteroidia gut bacteria and its dependence on substrate concentrations differs among species.},
author = {Doring C, Basen M.},
journal = {Biotechnol Biofuels Bioprod},
year = {2024},
doi = {10.1186/s13068-024-02539-9},
pmid = {38987848}
}
@article{lin104792,
title = {C(P)XCG Proteins of Haloferax volcanii with Predicted Zinc Finger Domains: The Majority Bind Zinc, but Several Do Not.},
author = {Uresin D, Schulte J, Morgner N, Soppa J.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25137166},
pmid = {39000272}
}
@article{lin104763,
title = {Microbial Community Shifts in Tea Plant Rhizosphere under Seawater Stress: Enrichment of Beneficial Taxa.},
author = {Zhang X, Li H, Li B, Song K, Sha Y, Liu Y, Dong S, Wang D, Yang L.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12071287},
pmid = {39065056}
}
@article{lin104708,
title = {Application of artificial backbone connectivity in the development of metalloenzyme mimics.},
author = {Wolfe JA, Horne WS.},
journal = {Curr Opin Chem Biol},
year = {2024},
doi = {10.1016/j.cbpa.2024.102509},
pmid = {39098212}
}
@article{lin104557,
title = {An acid-tolerant Clostridium sp. BLY-1 strain with high biohydrogen production rate.},
author = {Li L, Xie Z, Ning J, Zhang Y, Sang Y, Zhang L, Liu F.},
journal = {Bioresour Technol},
year = {2024},
doi = {10.1016/j.biortech.2024.131227},
pmid = {39117241}
}
@article{lin104714,
title = {Optimization of 1,3-propanediol production from fermentation of crude glycerol by immobilized Bacillus pumilus.},
author = {Pinyaphong P, La-Up A.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e35349},
pmid = {39170159}
}
@article{lin104756,
title = {Macrogenomics Reveals Effects on Marine Microbial Communities during Oplegnathus punctatus Enclosure Farming.},
author = {Wang L, Lu X, Xing Z, Teng X, Wang S, Liu T, Zheng L, Wang X, Qu J.},
journal = {Biology (Basel)},
year = {2024},
doi = {10.3390/biology13080618},
pmid = {39194557}
}
@article{lin104770,
title = {The Antibacterial Efficacy of Far-UVC Light: A Combined-Method Study Exploring the Effects of Experimental and Bacterial Variables on Dose-Response.},
author = {Griffin DT, Gourlay T, Maclean M.},
journal = {Pathogens},
year = {2024},
doi = {10.3390/pathogens13080698},
pmid = {39204298}
}
@article{lin104626,
title = {Transcriptomic characterization of recombinant Clostridium beijerinckii NCIMB 8052 expressing methylglyoxal synthase and glyoxal reductase from Clostridium pasteurianum ATCC 6013.},
author = {Kumar S, Agyeman-Duah E, Awaga-Cromwell MM, Ujor VC.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.01012-24},
pmid = {39258917}
}
@article{lin104754,
title = {Ferredoxins: Functions, Evolution, Potential Applications, and Challenges of Subtype Classification.},
author = {Syed K.},
journal = {Curr Issues Mol Biol},
year = {2024},
doi = {10.3390/cimb46090574},
pmid = {39329926}
}
@article{lin104779,
title = {Pan-genome-scale metabolic modeling of Bacillus subtilis reveals functionally distinct groups.},
author = {Neal M, Brakewood W, Betenbaugh M, Zengler K.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00923-24},
pmid = {39365060}
}
@article{lin104760,
title = {Functional roles of the [2Fe-2S] clusters in Synechocystis PCC 6803 Hox [NiFe]-hydrogenase reactivity with ferredoxins.},
author = {Blahut MR, Dawson ME, Kisgeropoulos EC, Ledinina AE, Mulder DW, King PW.},
journal = {J Biol Chem},
year = {2024},
doi = {10.1016/j.jbc.2024.107936},
pmid = {39476964}
}
@article{lin104749,
title = {Growth substrate limitation enhances anaerobic arsenic methylation by Paraclostridium bifermentans strain EML.},
author = {Qiao J, Sallet H, Meibom KL, Bernier-Latmani R.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.00961-24},
pmid = {39513722}
}
@article{lin370072,
title = {A reverse vaccinomics approach for the designing of novel immunogenic multi-epitope vaccine construct against gas gangrene and related colorectal cancer for Clostridium septicum DSM 7534.},
author = {Hassan Khanzada M, Khan A, Khan K, Jalal K, Aghayeva S, Uddin R.},
journal = {Hum Immunol},
year = {2024},
doi = {10.1016/j.humimm.2024.111169},
pmid = {39514991}
}
@article{lin104684,
title = {Mesoporous Electrodes Enhance the Electrocatalytic Performance of [FeFe]-Hydrogenase.},
author = {Webb S, Veliju A, Maroni P, Apfel UP, Happe T, Milton RD.},
journal = {Angew Chem Int Ed Engl},
year = {2025},
doi = {10.1002/anie.202416658},
pmid = {39530332}
}
@article{lin104801,
title = {A genomic analysis reveals the diversity of cellulosome displaying bacteria.},
author = {Minor CM, Takayesu A, Ha SM, Salwinski L, Sawaya MR, Pellegrini M, Clubb RT.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1473396},
pmid = {39539715}
}
@article{lin104814,
title = {Exploring the interaction between the gut microbiota and cyclic adenosine monophosphate-protein kinase A signaling pathway: a potential therapeutic approach for neurodegenerative diseases.},
author = {Deng F, Yang D, Qing L, Chen Y, Zou J, Jia M, Wang Q, Jiang R, Huang L.},
journal = {Neural Regen Res},
year = {2025},
doi = {10.4103/nrr.nrr-d-24-00607},
pmid = {39589173}
}
@article{lin104785,
title = {Functional analysis of the whole CYPome and Fdxome of Streptomyces venezuelae ATCC 15439.},
author = {Li S, Li Z, Zhang G, Urlacher VB, Ma L, Li S.},
journal = {Eng Microbiol},
year = {2024},
doi = {10.1016/j.engmic.2024.100166},
pmid = {39628593}
}
@article{lin104815,
title = {CRISPR-Cas9-based genome-editing technologies in engineering bacteria for the production of plant-derived terpenoids.},
author = {Sun X, Zhang H, Jia Y, Li J, Jia M.},
journal = {Eng Microbiol},
year = {2024},
doi = {10.1016/j.engmic.2024.100154},
pmid = {39629108}
}
@article{lin104562,
title = {Unveiling 14 novel 2-hydroxy acid racemization and epimerization reactions in the lactate racemase superfamily.},
author = {Urdiain-Arraiza J, Vandenberghe A, Dimitrova G, Desguin B.},
journal = {J Biol Chem},
year = {2025},
doi = {10.1016/j.jbc.2024.108069},
pmid = {39667499}
}
@article{lin104880,
title = {Structural and functional determination of peptide versus small molecule ligand binding at the apelin receptor.},
author = {Williams TL, Verdon G, Kuc RE, Currinn H, Bender B, Solcan N, Schlenker O, Macrae RGC, Brown J, Schutz M, Zhukov A, Sinha S, de Graaf C, Graf S, Maguire JJ, Brown AJH, Davenport AP.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-55381-w},
pmid = {39730334}
}
@article{lin104578,
title = {Bacterial Tolerance to 1-Butanol and 2-Butanol: Quantitative Assessment and Transcriptomic Response.},
author = {Arsov A, Petrova P, Gerginova M, Tsigoriyna L, Armenova N, Ignatova I, Petrov K.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms252413336},
pmid = {39769098}
}
@article{lin104696,
title = {Excessive Extracellular Ammonium Production by a Free-Living Nitrogen-Fixing Soil Clostridium sp. Strain.},
author = {Park S, Jang J.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12122634},
pmid = {39770836}
}
@article{lin370083,
title = {Valorization of Coffee Cherry By-Products Through Fermentation by Human Intestinal Lactobacilli in Functional Fermented Milk Beverages.},
author = {Picon A, Campanero Y, Sanchez C, Alvarez I, Rodriguez-Minguez E.},
journal = {Foods},
year = {2024},
doi = {10.3390/foods14010044},
pmid = {39796334}
}
@article{lin104558,
title = {A Consecutive Genome Engineering Method Reveals a New Phenotype and Regulation of Glucose and Glycerol Utilization in Clostridium Pasteurianum.},
author = {Nguyen T, Meleski LWG, Belavatta MP, Gurumoorthi S, Zhang C, Heins AL, Zeng AP.},
journal = {Eng Life Sci},
year = {2025},
doi = {10.1002/elsc.202400026},
pmid = {39801562}
}
@article{lin104730,
title = {Changes in a glycerol-degrading bacterial community in an upflow anaerobic reactor for 1,3-propanediol production.},
author = {Cordeiro CN, Rojas P, Kato MT, Florencio L, Sanz JL.},
journal = {Appl Microbiol Biotechnol},
year = {2025},
doi = {10.1007/s00253-025-13413-5},
pmid = {39891698}
}
@article{lin104732,
title = {Groundwater denitrification using electro-assisted autotrophic processes: exploring bacterial community dynamics in a single-chamber reactor.},
author = {Toledo-Alarcon J, Ortega-Martinez E, Pavez-Jara J, Franchi O, Nancucheo I, Zuniga-Barra H, Campos JL, Jeison D.},
journal = {Front Bioeng Biotechnol},
year = {2025},
doi = {10.3389/fbioe.2025.1475589},
pmid = {39912114}
}
@article{lin104843,
title = {Novel anti-inflammatory properties of mannose oligosaccharides in the treatment of inflammatory bowel disease via LGALS3 modulation.},
author = {Du Y, Fan Y, Li X, Chen F.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00648-3},
pmid = {39920168}
}
@article{lin104728,
title = {Bio-Inspired Self-Assembly of Enzyme-Micelle Systems for Semi-Artificial Photosynthesis.},
author = {Liu Y, Rodriguez-Jimenez S, Song H, Pannwitz A, Kim D, Coito AM, Manuel RR, Webb S, Su L, Bonke SA, Milton RD, Pereira IAC, Bonnet S, Hammarstrom L, Reisner E.},
journal = {Angew Chem Int Ed Engl},
year = {2025},
doi = {10.1002/anie.202424222},
pmid = {39951445}
}
@article{lin104563,
title = {Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations.},
author = {Scott WT, Rockx S, Marien Q, Regueira A, Candry P, Ganigue R, Koehorst JJ, Schaap PJ.},
journal = {Comput Struct Biotechnol J},
year = {2025},
doi = {10.1016/j.csbj.2025.01.013},
pmid = {40046987}
}
@article{lin104726,
title = {A [FeFe] Hydrogenase-Rubrerythrin Chimeric Enzyme Functions to Couple H2 Oxidation to Reduction of H2O2 in the Foodborne Pathogen Clostridium perfringens.},
author = {Taylor J, Mulder DW, Corrigan PS, Ratzloff MW, Irizarry Gonzalez N, Lubner CE, King PW, Silakov A.},
journal = {J Am Chem Soc},
year = {2025},
doi = {10.1021/jacs.4c18425},
pmid = {40048633}
}
@article{lin104788,
title = {Molecular principles of redox-coupled sodium pumping of the ancient Rnf machinery.},
author = {Kumar A, Roth J, Kim H, Saura P, Bohn S, Reif-Trauttmansdorff T, Schubert A, Kaila VRI, Schuller JM, Muller V.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-57375-8},
pmid = {40055346}
}
@article{lin104698,
title = {Colorimetric Determination of Tungsten and Molybdenum in Biological Samples.},
author = {Donaghy AP, Schut GJ, Shao N, Poole FL, Adams MWW.},
journal = {Bio Protoc},
year = {2025},
doi = {10.21769/bioprotoc.5195},
pmid = {40084075}
}
@article{lin104765,
title = {Novel anaerobic selenium oxyanion reducers native to FGD wastewater for enhanced selenium removal.},
author = {Sarkar P, Beebe M, Bhandari G, Wielinski J, Lowry GV, Gulliver D.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.01222-24},
pmid = {40084890}
}
@article{lin104741,
title = {Storage of the vital metal tungsten in a dominant SCFA-producing human gut microbe Eubacterium limosum and implications for other gut microbes.},
author = {Shao N, Zhou D, Schut GJ, Poole FL, Coffey SB, Donaghy AP, Putumbaka S, Thorgersen MP, Chen L, Rose J, Wang B-C, Adams MWW.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.02605-24},
pmid = {40126018}
}
@article{lin370080,
title = {Genomic and phenotypic characterization of staphylococci isolated from the skin of non-human primates.},
author = {Wildsmith C, Barratt S, Kerridge F, Thomas J, Negus D.},
journal = {Microbiology (Reading)},
year = {2025},
doi = {10.1099/mic.0.001546},
pmid = {40131783}
}
@article{lin104721,
title = {Genomic Insights into Selenate Reduction by Anaerobacillus Species.},
author = {Wang Q, Zhang J, Liang J, Wang Y, Ren C, Chen X, Cheng D, Zhang H, Liu H.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13030659},
pmid = {40142551}
}
@article{lin104706,
title = {Cyanophenylalanine as an Infrared Probe for Iron-Sulfur Cluster Redox State in Multicenter Metalloenzymes.},
author = {Duan Z, Wei J, Carr SB, Ramirez M, Evans RM, Ash PA, Rodriguez-Macia P, Sachdeva A, Vincent KA.},
journal = {Chembiochem},
year = {2025},
doi = {10.1002/cbic.202500251},
pmid = {40347495}
}
@article{lin104561,
title = {Application of exogenous electron mediator in fermentation to enhance the production of value-added products.},
author = {Yu Y, Shi Z, Li W, Bian M, Cheng C, Xi Y, Yao S, Zeng X, Jia Y.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.00495-25},
pmid = {40353653}
}
@article{lin104689,
title = {H-cluster Intermediates and Catalytic Properties of Clostridium pasteurianum [FeFe]-Hydrogenase III.},
author = {Kisgeropoulos EC, Ratzloff MW, Stroeva-Dahl EM, Hasan S, Varghese F, Artz JH, Peters JW, Mulder DW, King PW.},
journal = {Biochemistry},
year = {2025},
doi = {10.1021/acs.biochem.5c00066},
pmid = {40358972}
}
@article{lin104694,
title = {Probing the ferredoxin:hydrogenase electron transfer complex by infrared difference spectroscopy.},
author = {Sahin S, Brazard J, Zuchan K, Adachi TBM, Muhlenhoff U, Milton RD, Stripp ST.},
journal = {Chem Sci},
year = {2025},
doi = {10.1039/d5sc00550g},
pmid = {40365046}
}
@article{lin104691,
title = {Addressing challenges in microbial manufacturing: Systematic microbial biotechnology.},
author = {Liu L, Wang F, Wang L, Jiang X, Zhang H.},
journal = {Innovation (Camb)},
year = {2025},
doi = {10.1016/j.xinn.2025.100871},
pmid = {40528882}
}
@article{lin370077,
title = {Development of a Natural Coating Based on Fermented Milk Whey for Biopreservation of Cheese.},
author = {Moreno A, Calpe J, Dopazo V, Luz C, Quiles JM, Meca G.},
journal = {Foods},
year = {2025},
doi = {10.3390/foods14132149},
pmid = {40646901}
}
@article{lin370076,
title = {Biocontrol Ability Against Harmful Microbial Contamination of Vegan Mortadella with an Ingredient of Oat Fermented by Lactiplantibacillus plantarum.},
author = {Moreno A, Goncalves A, Riolo M, Dopazo V, Calpe J, Meca G.},
journal = {Foods},
year = {2025},
doi = {10.3390/foods14132195},
pmid = {40646947}
}
@article{lin370084,
title = {Lactic acid bacteria: beyond fermentation to bio-protection against fungal spoilage and mycotoxins in food systems.},
author = {Rahman MS, Soltani S, LaPointe G, Karboune S, Fliss I.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1580670},
pmid = {40661977}
}
@article{lin104683,
title = {A Nanobiocatalyst-Driven Hybrid System for Efficient and Sustainable Hydrogen Production via Electron Flow Optimization.},
author = {Yang L, Dong Y, Zhao D, Li X, He J, Lai TP, Zhou E, Ueki T, Li Y, Meng X, Zhang L, Yu B, Pei W, Fan Y, Gu T, Wang F, Xu D.},
journal = {Adv Mater},
year = {2025},
doi = {10.1002/adma.202508613},
pmid = {40665920}
}
@article{lin370075,
title = {Natural Honey-Propolis Combinations with Health-Promoting Potential: Antibacterial Activity Against Foodborne Pathogens.},
author = {Sanchez-Martin V, Lopez-Parra MB, Iriondo-DeHond A, Wojdylo A, Michalska-Ciechanowska A, Haza AI, Morales P, Del Castillo MD.},
journal = {Pharmaceuticals (Basel)},
year = {2025},
doi = {10.3390/ph18070988},
pmid = {40732277}
}
@article{lin370074,
title = {Carbohydrates in action: influencing infection and amplification of Staphylococcus aureus bacteriophages.},
author = {Vadym P, Volodymyr S.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-04219-6},
pmid = {40764526}
}
@article{lin370079,
title = {The effect of WWTP products amendments on Phaseolus vulgaris rhizosphere and its ability to inactivate clarithromycin.},
author = {Kotrbova L, Grabicova K, Svecova H, Stanova AV, Petrlikova M, Grabic R, Kodesova R, Chronakova A.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-14953-6},
pmid = {40846880}
}
@article{lin104703,
title = {Structural evolution of nitrogenase over 3 billion years.},
author = {Cuevas Zuviria B, Detemple F, Amritkar K, Garcia AK, Seefeldt L, Einsle O, Kacar B.},
journal = {Elife},
year = {2025},
doi = {10.7554/elife.105613},
pmid = {40934104}
}
@article{lin104755,
title = {Kinetic mechanisms of electron bifurcation with electron transfer flavoprotein, NADH, butyryl-CoA dehydrogenase, and ferredoxin reveal a semiquinone cycle.},
author = {Sucharitakul J, Mangkalee M, Intasian P, Pornsuwan S, Ermler U, Buckel W, Chaiyen P.},
journal = {J Biol Chem},
year = {2025},
doi = {10.1016/j.jbc.2025.110727},
pmid = {40967436}
}
@article{lin104713,
title = {Turning the FeFe hydrogenase from Clostridium beijerinckii into an efficient H2 oxidation catalyst using a redox-active matrix.},
author = {Filmon DT, Jaenecke J, Winkler M, Fourmond V, Leger C, Plumere N.},
journal = {Proc Natl Acad Sci U S A},
year = {2025},
doi = {10.1073/pnas.2514698122},
pmid = {41066106}
}
@article{lin104556,
title = {Defined and refined: development of a minimal medium for Clostridium pasteurianum.},
author = {Nadal Alemany N, Verboon DC, Kleerebezem R, Gonzalez-Cabaleiro R.},
journal = {Appl Microbiol Biotechnol},
year = {2025},
doi = {10.1007/s00253-025-13572-5},
pmid = {41074939}
}
@article{lin104690,
title = {Unlocking 1,3-Propanediol Production by Pseudomonas aeruginosa through Electro-Fermentation.},
author = {Narcizo JP, Guazzaroni ME, de Andrade AR, Reginatto V.},
journal = {ACS Omega},
year = {2025},
doi = {10.1021/acsomega.5c05374},
pmid = {41078824}
}
@article{lin104723,
title = {N-Terminal Metal-Binding Domain of Arabidopsis IBR5 Is Important for Its in Planta Functions.},
author = {Yeon J, Lim J, Song SK, Yi H.},
journal = {Int J Mol Sci},
year = {2025},
doi = {10.3390/ijms26199315},
pmid = {41096584}
}
@article{lin104555,
title = {Rational comparison of biohydrogen production using Clostridium species through dark fermentation during anaerobic batch processes.},
author = {Vauthier L, Rondags E, Loubiere C, Pen N, Framboisier X, Guedon E, Delaunay S.},
journal = {J Biotechnol},
year = {2026},
doi = {10.1016/j.jbiotec.2025.10.009},
pmid = {41135820}
}
@article{lin104729,
title = {High-Performance Microbial Fuel Cell for Aromatic Hydrocarbon Bioremediation: Leveraging a Unique Mangrove-Derived Electrogenic Consortium.},
author = {de Souza JC, Bonizol Zani AC, Silva JP, Dos Santos A, Umbuzeiro GA, Bueno AV, Lobo FL, Reginatto V, de Andrade AR.},
journal = {ACS Omega},
year = {2025},
doi = {10.1021/acsomega.5c05703},
pmid = {41210787}
}
@article{lin104681,
title = {Kinetic analysis of fermentative hydrogen production by Clostridium pasteurianum under static magnetic field.},
author = {Chen L, Wang M, Cheng L, Luan H.},
journal = {AMB Express},
year = {2025},
doi = {10.1186/s13568-025-01973-8},
pmid = {41264071}
}
@article{lin104682,
title = {Reconsidering the Enzyme Kinetics of [FeFe]-Hydrogenases: Improved Turnover Rates and New Insights into pH and Potential Dependence with Eu(II)-Based Solution Assays.},
author = {Sonmez E, Kostopoulos N, Gamache M, Cheah MH, Huang P, Bagnall AJ, Filmon DT, Voloshyn I, Happe T, Senger M, Plumere N, Sekretareva A, Berggren G.},
journal = {Anal Chem},
year = {2025},
doi = {10.1021/acs.analchem.5c02898},
pmid = {41289579}
}