@article{lin104291,
title = {Reclassification of Clostridium difficile as Clostridioides difficile (Hall and O'Toole 1935) Prévot 1938.},
author = {Lawson PA, Citron DM, Tyrrell KL, Finegold SM.},
journal = {Anaerobe},
year = {2016},
doi = {10.1016/j.anaerobe.2016.06.008},
pmid = {27370902}
}
@article{lin104300,
title = {Genome-Based Comparison of Clostridioides difficile: Average Amino Acid Identity Analysis of Core Genomes.},
author = {Cabal A, Jun SR, Jenjaroenpun P, Wanchai V, Nookaew I, Wongsurawat T, Burgess MJ, Kothari A, Wassenaar TM, Ussery DW.},
journal = {Microb Ecol},
year = {2018},
doi = {10.1007/s00248-018-1155-7},
pmid = {29445826}
}
@article{lin104299,
title = {Clostridium difficile Lipoprotein GerS Is Required for Cortex Modification and Thus Spore Germination.},
author = {Diaz OR, Sayer CV, Popham DL, Shen A.},
journal = {mSphere},
year = {2018},
doi = {10.1128/msphere.00205-18},
pmid = {29950380}
}
@article{lin104302,
title = {Clostridium difficile exosporium cysteine-rich proteins are essential for the morphogenesis of the exosporium layer, spore resistance, and affect C. difficile pathogenesis.},
author = {Calderon-Romero P, Castro-Cordova P, Reyes-Ramirez R, Milano-Cespedes M, Guerrero-Araya E, Pizarro-Guajardo M, Olguin-Araneda V, Gil F, Paredes-Sabja D.},
journal = {PLoS Pathog},
year = {2018},
doi = {10.1371/journal.ppat.1007199},
pmid = {30089172}
}
@article{lin104298,
title = {An Update on the Novel Genera and Species and Revised Taxonomic Status of Bacterial Organisms Described in 2016 and 2017.},
author = {Munson E, Carroll KC.},
journal = {J Clin Microbiol},
year = {2019},
doi = {10.1128/jcm.01181-18},
pmid = {30257907}
}
@article{lin104297,
title = {Can rumen bacteria communicate to each other?},
author = {Won MY, Oyama LB, Courtney SJ, Creevey CJ, Huws SA.},
journal = {Microbiome},
year = {2020},
doi = {10.1186/s40168-020-00796-y},
pmid = {32085816}
}
@article{lin104301,
title = {The Clostridioides difficile Cysteine-Rich Exosporium Morphogenetic Protein, CdeC, Exhibits Self-Assembly Properties That Lead to Organized Inclusion Bodies in Escherichia coli.},
author = {Romero-Rodriguez A, Troncoso-Cotal S, Guerrero-Araya E, Paredes-Sabja D.},
journal = {mSphere},
year = {2020},
doi = {10.1128/msphere.01065-20},
pmid = {33208520}
}
@article{lin104296,
title = {Major genetic discontinuity and novel toxigenic species in Clostridioides difficile taxonomy.},
author = {Knight DR, Imwattana K, Kullin B, Guerrero-Araya E, Paredes-Sabja D, Didelot X, Dingle KE, Eyre DW, Rodriguez C, Riley TV.},
journal = {Elife},
year = {2021},
doi = {10.7554/elife.64325},
pmid = {34114561}
}
@article{lin104289,
title = {Dynamic Associations of Milk Components With the Infant Gut Microbiome and Fecal Metabolites in a Mother-Infant Model by Microbiome, NMR Metabolomic, and Time-Series Clustering Analyses.},
author = {Komatsu Y, Kumakura D, Seto N, Izumi H, Takeda Y, Ohnishi Y, Nakaoka S, Aizawa T.},
journal = {Front Nutr},
year = {2021},
doi = {10.3389/fnut.2021.813690},
pmid = {35071301}
}
@article{lin104286,
title = {Robust demarcation of the family Peptostreptococcaceae and its main genera based on phylogenomic studies and taxon-specific molecular markers.},
author = {Bello S, McQuay S, Rudra B, Gupta RS.},
journal = {Int J Syst Evol Microbiol},
year = {2024},
doi = {10.1099/ijsem.0.006247},
pmid = {38319314}
}
@article{lin104294,
title = {Yeast mannan rich fraction positively influences microbiome uniformity, productivity associated taxa, and lay performance.},
author = {Leigh RJ, Corrigan A, Murphy RA, Taylor-Pickard J, Moran CA, Walsh F.},
journal = {Anim Microbiome},
year = {2024},
doi = {10.1186/s42523-024-00295-7},
pmid = {38438939}
}
@article{lin104293,
title = {Phylogenetic Analysis of the Genes in D-Ala-D-Lactate Synthesizing Glycopeptide Resistance Operons: The Different Origins of Functional and Regulatory Genes.},
author = {Kardos G, Laczko L, Kaszab E, Timmer B, Szarka K, Prepost E, Banyai K.},
journal = {Antibiotics (Basel)},
year = {2024},
doi = {10.3390/antibiotics13070573},
pmid = {39061255}
}
@article{lin104288,
title = {Turning trash into treasure: Hermetia illucens microbiome and biodegradation of industrial side streams.},
author = {Kluber P, Gurusinga FF, Hurka S, Vilcinskas A, Tegtmeier D.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.00991-24},
pmid = {39436059}
}
@article{lin104295,
title = {Single phage proteins sequester signals from TIR and cGAS-like enzymes.},
author = {Li D, Xiao Y, Fedorova I, Xiong W, Wang Y, Liu X, Huiting E, Ren J, Gao Z, Zhao X, Cao X, Zhang Y, Bondy-Denomy J, Feng Y.},
journal = {Nature},
year = {2024},
doi = {10.1038/s41586-024-08122-4},
pmid = {39478223}
}
@article{lin104292,
title = {Exploring the Linkage Between Ruminal Microbial Communities on Postweaning and Finishing Diets and Their Relation to Residual Feed Intake in Beef Cattle.},
author = {Peraza P, Fernandez-Calero T, Naya H, Sotelo-Silveira J, Navajas EA.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12122437},
pmid = {39770639}
}
@article{lin104287,
title = {parafac4microbiome: exploratory analysis of longitudinal microbiome data using parallel factor analysis.},
author = {van der Ploeg GR, Westerhuis JA, Heintz-Buschart A, Smilde AK.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00472-25},
pmid = {40396737}
}
@article{lin104290,
title = {Multi-omics surveillance of antimicrobial resistance in the pig gut microbiome.},
author = {Guitart-Matas J, Vera-Ponce de Leon A, Pope PB, Hvidsten TR, Fraile L, Ballester M, Ramayo-Caldas Y, Migura-Garcia L.},
journal = {Anim Microbiome},
year = {2025},
doi = {10.1186/s42523-025-00418-8},
pmid = {40528272}
}
@article{lin104285,
title = {An update on novel taxa and revised taxonomic status of bacteria isolated from human clinical specimens described in 2024.},
author = {Carella A, Carroll KC, Munson E.},
journal = {J Clin Microbiol},
year = {2025},
doi = {10.1128/jcm.01068-25},
pmid = {41105204}
}