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title = {Efficient co-production of fermentable sugars and biobutanol from corn stover based on a novel butyric acid pretreatment strategy},
author = {Luo H, Shi Y, Xie F, Zhou T, Gao L, Yang R, Wang Z.},
journal = {Industrial crops and products.},
year = {2024},
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@article{lin98878,
title = {An integrated biorefinery process to produce butanol and pulp from corn straw},
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journal = {Industrial crops and products.},
year = {2019},
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title = {Comparative genomics of Clostridium butyricum reveals a conserved genome architecture and novel virulence-related gene clusters},
author = {Anderson O, Chong J, Thomas G.},
journal = {Microb Genom},
year = {2025},
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@article{lin99054,
title = {Isolation of transcription initiation signals from Corynebacterium ammoniagenes and comparison of their gene expression levels in C. ammoniagenes and Escherichia coli},
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journal = {Biotechnol Lett},
year = {2003},
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@article{lin99368,
title = {Conversion of biomass to biofuels: Integration of a ternary deep eutectic solvent pretreatment and microbial fermentation for C2-C4 bioalcohols production from lignocellulose},
author = {Luo H, Zhou T, Zhang R, Yang Q, You X, Wang S, Wang J, Xie F, Yang R.},
journal = {Industrial crops and products.},
year = {2024},
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@article{lin99374,
title = {Production of acetone-butanol-ethanol and lipids from sugarcane molasses via coupled fermentation by Clostridium acetobutylicum and oleaginous yeasts},
author = {Gao R, Xiong L, Wang M, Peng F, Zhang H, Chen X.},
journal = {Industrial crops and products.},
year = {2023},
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@article{lin99380,
title = {Lignocellulosic biomass to biobutanol: Toxic effects and response mechanism of the combined stress of lignin-derived phenolic acids and phenolic aldehydes to Clostridium acetobutylicum},
author = {Luo H, Liu Z, Xie F, Velayutan TA, Peng F.},
journal = {Industrial crops and products.},
year = {2022},
doi = {10.1016/j.indcrop.2021.113722},
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@article{lin99399,
title = {Co-fermentation of hemicellulosic hydrolysates and starch from sweet sorghum by Clostridium acetobutylicum: A synergistic effect for butanol production},
author = {Mirfakhar M, Asadollahi MA, Amiri H, Karimi K.},
journal = {Industrial crops and products.},
year = {2020},
doi = {10.1016/j.indcrop.2020.112459},
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@article{lin99406,
title = {Enhanced coproduction and trade-off of the hydrogen and butanol in the coupled system of pervaporation and repeated-cycle fixed-bed fermentation},
author = {Liu J, Fan S, Xiao Z.},
journal = {Industrial crops and products.},
year = {2021},
doi = {10.1016/j.indcrop.2020.113172},
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title = {Improvement of the Genome Editing Tools Based on 5FC/5FU Counter Selection in Clostridium acetobutylicum},
author = {Boudignon E, Foulquier C, Soucaille P.},
journal = {Microorganisms},
year = {2023},
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title = {Integrated processes for production of cellulosic and hemicellulosic biobutanol from sweet sorghum bagasse using autohydrolysis},
author = {Khalili F, Amiri H.},
journal = {Industrial crops and products.},
year = {2020},
doi = {10.1016/j.indcrop.2019.111918},
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title = {Enhanced hydrogen production from lignocellulosic substrates via bioaugmentation with Clostridium strains},
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journal = {Industrial crops and products.},
year = {2019},
doi = {10.1016/j.indcrop.2019.05.023},
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title = {CaCO3 supplementation alleviates the inhibition of formic acid on acetone/butanol/ethanol fermentation by Clostridium acetobutylicum},
author = {Qi G, Xiong L, Lin X, Huang C, Li H, Chen X, Chen X.},
journal = {Biotechnol Lett},
year = {2017},
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@article{lin99503,
title = {Phenolic compounds removal from sweet sorghum grain for efficient biobutanol production without nutrient supplementation},
author = {Mirfakhar M, Asadollahi MA, Amiri H, Karimi K.},
journal = {Industrial crops and products.},
year = {2017},
doi = {10.1016/j.indcrop.2017.06.028},
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title = {Modular and signal-responsive transcriptional regulation using CRISPRi-aided genetic switches in Escherichia coli},
author = {Kim S, Woo S, Park J, Lee S, Lee D.},
journal = {J Biol Eng},
year = {2025},
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title = {Assessment of morphological changes of Clostridium acetobutylicum by flow cytometry during acetone/butanol/ethanol extractive fermentation},
author = {Gonzalez-Penas H, Lu-Chau TA, Moreira MT, Lema JM.},
journal = {Biotechnol Lett},
year = {2015},
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title = {Co-fermentation of alfalfa juice and hardwood hydrolysate for butanol production in combined biorefinery systems},
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journal = {Industrial crops and products.},
year = {2016},
doi = {10.1016/j.indcrop.2016.04.057},
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title = {Preparation and Immobilization Mechanism on a Novel Composite Carrier PDA-CF/PUF to Improve Cells Immobilization and Xylitol Production},
author = {Wang L, Liu J, Shen Y, Yin Y, Ni Z, Xi J, Hu Y, Yuan Q.},
journal = {Foods},
year = {2024},
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title = {Over-expression of stress protein-encoding genes helps Clostridium acetobutylicum to rapidly adapt to butanol stress},
author = {Mann MS, Dragovic Z, Schirrmacher G, Lutke-Eversloh T.},
journal = {Biotechnol Lett},
year = {2012},
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title = {Extension temperature of 60°C required for PCR amplification of large DNA fragments (>5 kb) from a low GC bacterium Clostridium acetobutylicum },
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journal = {World J Microbiol Biotechnol},
year = {2011},
doi = {10.1007/s11274-010-0451-2},
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title = {Genetic modifications and introduction of heterologous pdc genes in Enterococcus faecalis for its use in production of bioethanol},
author = {Rana NF, Gente S, Rince A, Auffray Y, Laplace JM.},
journal = {Biotechnol Lett},
year = {2012},
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@article{lin99899,
title = {Agricultural residues and energy crops as potentially economical and novel substrates for microbial production of butanol (a biofuel)},
author = {Qureshi N.},
journal = {CAB reviews: perspectives in agriculture, veterinary science, nutrition and natural resources.},
year = {2010},
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title = {Pretreatment and Conversion of Distiller's Dried Grains with Solubles for Acetone- Butanol-Ethanol (ABE) Production},
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journal = {Transactions of the ASABE.},
year = {2009},
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@article{lin99965,
title = {Reduction in butanol inhibition by perstraction: utilization of concentrated lactose/whey permeate by Clostridium acetobutylicum to enhance butanol fermentation economics},
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journal = {Food and bioproducts processing : transactions of the Institution of Chemical Engineers, Part C.},
year = {2005},
doi = {10.1205/fbp.04163},
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title = {Reconstruction and expression of the autolytic gene from Clostridium acetobutylicum ATCC 824 in Escherichia coli.},
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journal = {FEMS Microbiol Lett},
year = {1992},
doi = {10.1016/0378-1097(92)90730-c},
pmid = {1355455}
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title = {Expression of cloned homologous fermentative genes in Clostridium acetobutylicum ATCC 824.},
author = {Mermelstein LD, Welker NE, Bennett GN, Papoutsakis ET},
journal = {Biotechnology (N Y)},
year = {1992},
doi = {10.1038/nbt0292-190},
pmid = {1368230}
}
@article{lin98823,
title = {mRNA analysis of the adc gene region of Clostridium acetobutylicum during the shift to solventogenesis.},
author = {Gerischer U, Durre P.},
journal = {J Bacteriol},
year = {1992},
doi = {10.1128/jb.174.2.426-433.1992},
pmid = {1370288}
}
@article{lin7460,
title = {Molecular characterization of two Clostridium acetobutylicum ATCC 824 butanol dehydrogenase isozyme genes.},
author = {Walter KA, Bennett GN, Papoutsakis ET},
journal = {J Bacteriol},
year = {1992},
doi = {10.1128/jb.174.22.7149-7158.1992},
pmid = {1385386}
}
@article{lin99351,
title = {Identification and characterization of a surface protein-releasing activity in Streptococcus mutans and other pathogenic streptococci.},
author = {Lee SF.},
journal = {Infect Immun},
year = {1992},
doi = {10.1128/iai.60.10.4032-4039.1992},
pmid = {1398915}
}
@article{lin7461,
title = {Vector construction, transformation, and gene amplification in Clostridium acetobutylicum ATCC 824.},
author = {Lee SY, Mermelstein LD, Bennett GN, Papoutsakis ET},
journal = {Ann N Y Acad Sci},
year = {1992},
doi = {10.1111/j.1749-6632.1992.tb42572.x},
pmid = {1416617}
}
@article{lin99205,
title = {Purification and properties of 3-hydroxybutyryl-coenzyme A dehydrogenase from Clostridium beijerinckii ("Clostridium butylicum") NRRL B593.},
author = {Colby GD, Chen JS.},
journal = {Appl Environ Microbiol},
year = {1992},
doi = {10.1128/aem.58.10.3297-3302.1992},
pmid = {1444364}
}
@article{lin99306,
title = {Purification and characterization of a thermostable beta-xylosidase from Thermoanaerobacter ethanolicus.},
author = {Shao W, Wiegel J.},
journal = {J Bacteriol},
year = {1992},
doi = {10.1128/jb.174.18.5848-5853.1992},
pmid = {1522062}
}
@article{lin99326,
title = {Purification, characterization, and mode of action of endoxylanases 1 and 2 from Fibrobacter succinogenes S85.},
author = {Matte A, Forsberg CW.},
journal = {Appl Environ Microbiol},
year = {1992},
doi = {10.1128/aem.58.1.157-168.1992},
pmid = {1539970}
}
@article{lin99236,
title = {Molecular characterization of the dnaK gene region of Clostridium acetobutylicum, including grpE, dnaJ, and a new heat shock gene.},
author = {Narberhaus F, Giebeler K, Bahl H.},
journal = {J Bacteriol},
year = {1992},
doi = {10.1128/jb.174.10.3290-3299.1992},
pmid = {1577695}
}
@article{lin7464,
title = {Purification and characterization of an extracellular muramidase of Clostridium acetobutylicum ATCC 824 that acts on non-N-acetylated peptidoglycan.},
author = {Croux C, Canard B, Goma G, Soucaille P},
journal = {Appl Environ Microbiol},
year = {1992},
doi = {10.1128/aem.58.4.1075-1081.1992},
pmid = {1599233}
}
@article{lin99323,
title = {Characterization of the genes encoding beta-ketoadipate: succinyl-coenzyme A transferase in Pseudomonas putida.},
author = {Parales RE, Harwood CS.},
journal = {J Bacteriol},
year = {1992},
doi = {10.1128/jb.174.14.4657-4666.1992},
pmid = {1624453}
}
@article{lin7463,
title = {Autolysis of Clostridium acetobutylicum ATCC 824.},
author = {Croux C, Canard B, Goma G, Soucaille P},
journal = {J Gen Microbiol},
year = {1992},
doi = {10.1099/00221287-138-5-861},
pmid = {1645127}
}
@article{lin7468,
title = {Cloning of the Clostridium acetobutylicum ATCC 824 acetyl coenzyme A acetyltransferase (thiolase; EC 2.3.1.9) gene.},
author = {Petersen DJ, Bennett GN},
journal = {Appl Environ Microbiol},
year = {1991},
doi = {10.1128/aem.57.9.2735-2741.1991},
pmid = {1685080}
}
@article{lin7476,
title = {Regulation and localization of amylolytic enzymes in Clostridium acetobutylicum ATCC 824.},
author = {Annous BA, Blaschek HP},
journal = {Appl Environ Microbiol},
year = {1990},
doi = {10.1128/aem.56.8.2559-2561.1990},
pmid = {1698349}
}
@article{lin7467,
title = {Isolation and characterization of Clostridium acetobutylicum mutants with enhanced amylolytic activity.},
author = {Annous BA, Blaschek HP},
journal = {Appl Environ Microbiol},
year = {1991},
doi = {10.1128/aem.57.9.2544-2548.1991},
pmid = {1722664}
}
@article{lin368982,
title = {Properties of the glucose phosphotransferase system of Clostridium acetobutylicum NCIB 8052.},
author = {Mitchell WJ, Shaw JE, Andrews L.},
journal = {Appl Environ Microbiol},
year = {1991},
doi = {10.1128/aem.57.9.2534-2539.1991},
pmid = {1768126}
}
@article{lin98831,
title = {Natural transfer of conjugative transposon Tn916 between gram-positive and gram-negative bacteria.},
author = {Bertram J, Stratz M, Durre P.},
journal = {J Bacteriol},
year = {1991},
doi = {10.1128/jb.173.2.443-448.1991},
pmid = {1846142}
}
@article{lin7469,
title = {Sequence of the lyc gene encoding the autolytic lysozyme of Clostridium acetobutylicum ATCC824: comparison with other lytic enzymes.},
author = {Croux C, Garcia JL},
journal = {Gene},
year = {1991},
doi = {10.1016/0378-1119(91)90460-s},
pmid = {1916274}
}
@article{lin99137,
title = {Isolation and characterization of a filamentous viruslike particle from Clostridium acetobutylicum NCIB 6444.},
author = {Kim AY, Blaschek HP.},
journal = {J Bacteriol},
year = {1991},
doi = {10.1128/jb.173.2.530-535.1991},
pmid = {1987147}
}
@article{lin7470,
title = {Molecular cloning of an alcohol (butanol) dehydrogenase gene cluster from Clostridium acetobutylicum ATCC 824.},
author = {Petersen DJ, Welch RW, Rudolph FB, Bennett GN},
journal = {J Bacteriol},
year = {1991},
doi = {10.1128/jb.173.5.1831-1834.1991},
pmid = {1999395}
}
@article{lin7474,
title = {Purification and characterization of acidolysin, an acidic metalloprotease produced by Clostridium acetobutylicum ATCC 824.},
author = {Croux C, Paquet V, Goma G, Soucaille P},
journal = {Appl Environ Microbiol},
year = {1990},
doi = {10.1128/aem.56.12.3634-3642.1990},
pmid = {2082818}
}
@article{lin99282,
title = {The genes for three xylan-degrading activities from Bacteroides ovatus are clustered in a 3.8-kilobase region.},
author = {Whitehead TR, Hespell RB.},
journal = {J Bacteriol},
year = {1990},
doi = {10.1128/jb.172.5.2408-2412.1990},
pmid = {2110141}
}
@article{lin99354,
title = {Cloning, sequence analysis, and expression of genes encoding xylan-degrading enzymes from the thermophile "Caldocellum saccharolyticum".},
author = {Luthi E, Love DR, McAnulty J, Wallace C, Caughey PA, Saul D, Bergquist PL.},
journal = {Appl Environ Microbiol},
year = {1990},
doi = {10.1128/aem.56.4.1017-1024.1990},
pmid = {2111111}
}
@article{lin99277,
title = {Purification and properties of thermostable xylanase and beta-xylosidase produced by a newly isolated Bacillus stearothermophilus strain.},
author = {Nanmori T, Watanabe T, Shinke R, Kohno A, Kawamura Y.},
journal = {J Bacteriol},
year = {1990},
doi = {10.1128/jb.172.12.6669-6672.1990},
pmid = {2123854}
}
@article{lin368970,
title = {Conjugative plasmid transfer from Escherichia coli to Clostridium acetobutylicum.},
author = {Williams DR, Young DI, Young M.},
journal = {J Gen Microbiol},
year = {1990},
doi = {10.1099/00221287-136-5-819},
pmid = {2199603}
}
@article{lin7473,
title = {Cloning, sequencing, and molecular analysis of the acetoacetate decarboxylase gene region from Clostridium acetobutylicum.},
author = {Gerischer U, Durre P},
journal = {J Bacteriol},
year = {1990},
doi = {10.1128/jb.172.12.6907-6918.1990},
pmid = {2254264}
}
@article{lin7475,
title = {Purification of acetoacetate decarboxylase from Clostridium acetobutylicum ATCC 824 and cloning of the acetoacetate decarboxylase gene in Escherichia coli.},
author = {Petersen DJ, Bennett GN},
journal = {Appl Environ Microbiol},
year = {1990},
doi = {10.1128/aem.56.11.3491-3498.1990},
pmid = {2268159}
}
@article{lin99188,
title = {Purification and properties of an acetoacetyl coenzyme A-reacting phosphotransbutyrylase from Clostridium beijerinckii ("Clostridium butylicum") NRRL B593.},
author = {Thompson DK, Chen JS.},
journal = {Appl Environ Microbiol},
year = {1990},
doi = {10.1128/aem.56.3.607-613.1990},
pmid = {2317039}
}
@article{lin99138,
title = {Effects of propionate and acetate additions on solvent production in batch cultures of Clostridium acetobutylicum.},
author = {Husemann MH, Papoutsakis ET.},
journal = {Appl Environ Microbiol},
year = {1990},
doi = {10.1128/aem.56.5.1497-1500.1990},
pmid = {2339898}
}
@article{lin99350,
title = {Characterization of the extracellular cellulase from a mesophilic clostridium (strain C7).},
author = {Cavedon K, Leschine SB, Canale-Parola E.},
journal = {J Bacteriol},
year = {1990},
doi = {10.1128/jb.172.8.4231-4237.1990},
pmid = {2376560}
}
@article{lin7477,
title = {Cloning and expression of Clostridium acetobutylicum ATCC 824 acetoacetyl-coenzyme A:acetate/butyrate:coenzyme A-transferase in Escherichia coli.},
author = {Cary JW, Petersen DJ, Papoutsakis ET, Bennett GN},
journal = {Appl Environ Microbiol},
year = {1990},
doi = {10.1128/aem.56.6.1576-1583.1990},
pmid = {2383002}
}
@article{lin99158,
title = {Isolation of a single-stranded plasmid from Clostridium acetobutylicum NCIB 6444.},
author = {Kim AY, Vertes AA, Blaschek HP.},
journal = {Appl Environ Microbiol},
year = {1990},
doi = {10.1128/aem.56.6.1725-1728.1990},
pmid = {2383010}
}
@article{lin99313,
title = {Identification of the Butyrivibrio fibrisolvens xylosidase gene (xylB) coding region and its expression in Escherichia coli.},
author = {Sewell GW, Utt EA, Hespell RB, Mackenzie KF, Ingram LO.},
journal = {Appl Environ Microbiol},
year = {1989},
doi = {10.1128/aem.55.2.306-311.1989},
pmid = {2497707}
}
@article{lin7479,
title = {Pyruvate fermentation by Clostridium acetobutylicum.},
author = {Janati-Idrissi R, Junelles AM, el Kanouni A, Petitdemange H, Gay R},
journal = {Biochem Cell Biol},
year = {1989},
doi = {10.1139/o89-110},
pmid = {2556163}
}
@article{lin368972,
title = {Transfer of Tn1545 and Tn916 to Clostridium acetobutylicum.},
author = {Woolley RC, Pennock A, Ashton RJ, Davies A, Young M.},
journal = {Plasmid},
year = {1989},
doi = {10.1016/0147-619x(89)90027-9},
pmid = {2560219}
}
@article{lin7483,
title = {Cloning and expression of a Clostridium acetobutylicum alpha-amylase gene in Escherichia coli.},
author = {Verhasselt P, Poncelet F, Vits K, Van Gool A, Vanderleyden J},
journal = {FEMS Microbiol Lett},
year = {1989},
doi = {10.1111/j.1574-6968.1989.tb03097.x},
pmid = {2661316}
}
@article{lin7481,
title = {Purification and characterization of the NADH-dependent butanol dehydrogenase from Clostridium acetobutylicum (ATCC 824).},
author = {Welch RW, Rudolph FB, Papoutsakis ET},
journal = {Arch Biochem Biophys},
year = {1989},
doi = {10.1016/0003-9861(89)90489-x},
pmid = {2673038}
}
@article{lin7486,
title = {Phosphotransbutyrylase from Clostridium acetobutylicum ATCC 824 and its role in acidogenesis.},
author = {Wiesenborn DP, Rudolph FB, Papoutsakis ET},
journal = {Appl Environ Microbiol},
year = {1989},
doi = {10.1128/aem.55.2.317-322.1989},
pmid = {2719475}
}
@article{lin7485,
title = {Coenzyme A transferase from Clostridium acetobutylicum ATCC 824 and its role in the uptake of acids.},
author = {Wiesenborn DP, Rudolph FB, Papoutsakis ET},
journal = {Appl Environ Microbiol},
year = {1989},
doi = {10.1128/aem.55.2.323-329.1989},
pmid = {2719476}
}
@article{lin7487,
title = {Isolation and characterization of xylose- and xylan-utilizing anaerobic bacteria.},
author = {Murty MV, Chandra TS},
journal = {Antonie Van Leeuwenhoek},
year = {1989},
doi = {10.1007/BF00404755},
pmid = {2742371}
}
@article{lin99335,
title = {Molecular cloning of genes from Ruminococcus flavefaciens encoding xylanase and beta(1-3,1-4)glucanase activities.},
author = {Flint HJ, McPherson CA, Bisset J.},
journal = {Appl Environ Microbiol},
year = {1989},
doi = {10.1128/aem.55.5.1230-1233.1989},
pmid = {2757382}
}
@article{lin99217,
title = {Amino acid transport by membrane vesicles of an obligate anaerobic bacterium, Clostridium acetobutylicum.},
author = {Driessen AJ, Ubbink-Kok T, Konings WN.},
journal = {J Bacteriol},
year = {1988},
doi = {10.1128/jb.170.2.817-820.1988},
pmid = {2828326}
}
@article{lin99240,
title = {Light-driven amino acid uptake in Streptococcus cremoris or Clostridium acetobutylicum membrane vesicles fused with liposomes containing bacterial reaction centers.},
author = {Crielaard W, Driessen AJ, Molenaar D, Hellingwerf KJ, Konings WN.},
journal = {J Bacteriol},
year = {1988},
doi = {10.1128/jb.170.4.1820-1824.1988},
pmid = {2832381}
}
@article{lin99229,
title = {Cloning and expression of Clostridium acetobutylicum phosphotransbutyrylase and butyrate kinase genes in Escherichia coli.},
author = {Cary JW, Petersen DJ, Papoutsakis ET, Bennett GN.},
journal = {J Bacteriol},
year = {1988},
doi = {10.1128/jb.170.10.4613-4618.1988},
pmid = {2844725}
}
@article{lin99242,
title = {Effects of butanol on Clostridium acetobutylicum.},
author = {Bowles LK, Ellefson WL.},
journal = {Appl Environ Microbiol},
year = {1985},
doi = {10.1128/aem.50.5.1165-1170.1985},
pmid = {2868690}
}
@article{lin99349,
title = {Regulation of arginine-ornithine exchange and the arginine deiminase pathway in Streptococcus lactis.},
author = {Poolman B, Driessen AJ, Konings WN.},
journal = {J Bacteriol},
year = {1987},
doi = {10.1128/jb.169.12.5597-5604.1987},
pmid = {3119567}
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@article{lin99342,
title = {Multiplicity of beta-1,4-xylanase in microorganisms: functions and applications.},
author = {Wong KK, Tan LU, Saddler JN.},
journal = {Microbiol Rev},
year = {1988},
doi = {10.1128/mr.52.3.305-317.1988},
pmid = {3141761}
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@article{lin99196,
title = {Structure of an endo-beta-1,4-glucanase gene from Clostridium acetobutylicum P262 showing homology with endoglucanase genes from Bacillus spp.},
author = {Zappe H, Jones WA, Jones DT, Woods DR.},
journal = {Appl Environ Microbiol},
year = {1988},
doi = {10.1128/aem.54.5.1289-1292.1988},
pmid = {3389820}
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title = {Acetone-butanol fermentation revisited.},
author = {Jones DT, Woods DR.},
journal = {Microbiol Rev},
year = {1986},
doi = {10.1128/mr.50.4.484-524.1986},
pmid = {3540574}
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title = {Effect of butanol on lipid composition and fluidity of Clostridium acetobutylicum ATCC 824.},
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year = {1984},
doi = {10.1128/aem.47.1.193-194.1984},
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title = {A Clostridium acetobutylicum regulator gene (regA) affecting amylase production in Bacillus subtilis.},
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journal = {Microbiology (Reading)},
year = {1995},
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year = {1995},
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year = {1995},
doi = {10.1128/aem.61.9.3509-3512.1995},
pmid = {7574661}
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title = {Alcohol dehydrogenase: multiplicity and relatedness in the solvent-producing clostridia.},
author = {Chen JS},
journal = {FEMS Microbiol Rev},
year = {1995},
doi = {10.1111/j.1574-6976.1995.tb00210.x},
pmid = {7576768}
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title = {Molecular genetics and the initiation of solventogenesis in Clostridium beijerinckii (formerly Clostridium acetobutylicum) NCIMB 8052.},
author = {Wilkinson SR, Young DI, Morris JG, Young M},
journal = {FEMS Microbiol Rev},
year = {1995},
doi = {10.1111/j.1574-6976.1995.tb00211.x},
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@article{lin99300,
title = {Biochemical and molecular characterization of the oxidative branch of glycerol utilization by Citrobacter freundii.},
author = {Daniel R, Stuertz K, Gottschalk G.},
journal = {J Bacteriol},
year = {1995},
doi = {10.1128/jb.177.15.4392-4401.1995},
pmid = {7635824}
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@article{lin99263,
title = {Purification and characterization of an extracellular alpha-amylase from Clostridium perfringens type A.},
author = {Shih NJ, Labbe RG.},
journal = {Appl Environ Microbiol},
year = {1995},
doi = {10.1128/aem.61.5.1776-1779.1995},
pmid = {7646015}
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title = {Analysis of Tn916-induced mutants of Clostridium acetobutylicum altered in solventogenesis and sporulation.},
author = {Mattsson DM, Rogers P},
journal = {J Ind Microbiol},
year = {1994},
doi = {10.1007/BF01569758},
pmid = {7765050}
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title = {Physical map of the Clostridium beijerinckii (formerly Clostridium acetobutylicum) NCIMB 8052 chromosome.},
author = {Wilkinson SR, Young M},
journal = {J Bacteriol},
year = {1995},
doi = {10.1128/jb.177.2.439-448.1995},
pmid = {7814334}
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year = {1994},
doi = {10.1111/j.1574-6968.1994.tb07308.x},
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@article{lin99142,
title = {Tracking the evolution of the bacterial choline-binding domain: molecular characterization of the Clostridium acetobutylicum NCIB 8052 cspA gene.},
author = {Sanchez-Beato AR, Ronda C, Garcia JL.},
journal = {J Bacteriol},
year = {1995},
doi = {10.1128/jb.177.4.1098-1103.1995},
pmid = {7860591}
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@article{lin7440,
title = {Characterization of an acetyl-CoA C-acetyltransferase (thiolase) gene from Clostridium acetobutylicum ATCC 824.},
author = {Stim-Herndon KP, Petersen DJ, Bennett GN},
journal = {Gene},
year = {1995},
doi = {10.1016/0378-1119(94)00838-j},
pmid = {7867955}
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title = {Sequence and arrangement of genes encoding sigma factors in Clostridium acetobutylicum ATCC 824.},
author = {Wong J, Sass C, Bennett GN},
journal = {Gene},
year = {1995},
doi = {10.1016/0378-1119(94)00818-d},
pmid = {7883192}
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@article{lin99293,
title = {Purification and characterization of alpha-L-arabinofuranosidase from Bacillus stearothermophilus T-6.},
author = {Gilead S, Shoham Y.},
journal = {Appl Environ Microbiol},
year = {1995},
doi = {10.1128/aem.61.1.170-174.1995},
pmid = {7887599}
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@article{lin7450,
title = {Role of the C-terminal domain of the lysozyme of Clostridium acetobutylicum ATCC 824 in a chimeric pneumococcal-clostridial cell wall lytic enzyme.},
author = {Croux C, Ronda C, Lopez R, Garcia JL},
journal = {FEBS Lett},
year = {1993},
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pmid = {7903254}
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title = {Transmembrane pH of Clostridium acetobutylicum is inverted (more acidic inside) when the in vivo activity of hydrogenase is decreased.},
author = {Girbal L, Vasconcelos I, Soucaille P.},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.19.6146-6147.1994},
pmid = {7928980}
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title = {Interchange of functional domains switches enzyme specificity: construction of a chimeric pneumococcal-clostridial cell wall lytic enzyme.},
author = {Croux C, Ronda C, Lopez R, Garcia JL},
journal = {Mol Microbiol},
year = {1993},
doi = {10.1111/j.1365-2958.1993.tb01231.x},
pmid = {7934908}
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@article{lin99132,
title = {Regulation of Clostridium acetobutylicum metabolism as revealed by mixed-substrate steady-state continuous cultures: role of NADH/NAD ratio and ATP pool.},
author = {Girbal L, Soucaille P.},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.21.6433-6438.1994},
pmid = {7961393}
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@article{lin7444,
title = {Sporulation and primary sigma factor homologous genes in Clostridium acetobutylicum.},
author = {Sauer U, Treuner A, Buchholz M, Santangelo JD, Durre P},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.21.6572-6582.1994},
pmid = {7961408}
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@article{lin99081,
title = {Genetic and metabolic engineering of Clostridium acetobutylicum ATCC 824.},
author = {Mermelstein LD, Welker NE, Petersen DJ, Bennett GN, Papoutsakis ET.},
journal = {Ann N Y Acad Sci},
year = {1994},
doi = {10.1111/j.1749-6632.1994.tb47376.x},
pmid = {8010697}
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title = {Expression of plasmid-encoded aad in Clostridium acetobutylicum M5 restores vigorous butanol production.},
author = {Nair RV, Papoutsakis ET},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.18.5843-5846.1994},
pmid = {8083176}
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@article{lin99089,
title = {Regulation of carbon and electron flow in Clostridium acetobutylicum grown in chemostat culture at neutral pH on mixtures of glucose and glycerol.},
author = {Vasconcelos I, Girbal L, Soucaille P.},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.5.1443-1450.1994},
pmid = {8113186}
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@article{lin7449,
title = {Heterologous expression of endo-beta-1,4-D-glucanase from Clostridium cellulovorans in Clostridium acetobutylicum ATCC 824 following transformation of the engB gene.},
author = {Kim AY, Attwood GT, Holt SM, White BA, Blaschek HP},
journal = {Appl Environ Microbiol},
year = {1994},
doi = {10.1128/aem.60.1.337-340.1994},
pmid = {8117087}
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@article{lin98824,
title = {Cloning, sequencing, and molecular analysis of the sol operon of Clostridium acetobutylicum, a chromosomal locus involved in solventogenesis.},
author = {Fischer RJ, Helms J, Durre P.},
journal = {J Bacteriol},
year = {1993},
doi = {10.1128/jb.175.21.6959-6969.1993},
pmid = {8226639}
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@article{lin7452,
title = {Sequence and arrangement of two genes of the butyrate-synthesis pathway of Clostridium acetobutylicum ATCC 824.},
author = {Walter KA, Nair RV, Cary JW, Bennett GN, Papoutsakis ET},
journal = {Gene},
year = {1993},
doi = {10.1016/0378-1119(93)90182-3},
pmid = {8244020}
}
@article{lin7447,
title = {Molecular characterization of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824.},
author = {Nair RV, Bennett GN, Papoutsakis ET},
journal = {J Bacteriol},
year = {1994},
doi = {10.1128/jb.176.3.871-885.1994},
pmid = {8300540}
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@article{lin368985,
title = {Compilation of small ribosomal subunit RNA structures.},
author = {Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.},
journal = {Nucleic Acids Res},
year = {1993},
doi = {10.1093/nar/21.13.3025},
pmid = {8332525}
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@article{lin99248,
title = {Purification and characterization of a primary-secondary alcohol dehydrogenase from two strains of Clostridium beijerinckii.},
author = {Ismaiel AA, Zhu CX, Colby GD, Chen JS.},
journal = {J Bacteriol},
year = {1993},
doi = {10.1128/jb.175.16.5097-5105.1993},
pmid = {8349550}
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@article{lin7458,
title = {In vivo methylation in Escherichia coli by the Bacillus subtilis phage phi 3T I methyltransferase to protect plasmids from restriction upon transformation of Clostridium acetobutylicum ATCC 824.},
author = {Mermelstein LD, Papoutsakis ET},
journal = {Appl Environ Microbiol},
year = {1993},
doi = {10.1128/aem.59.4.1077-1081.1993},
pmid = {8386500}
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@article{lin99343,
title = {REBASE--restriction enzymes and methylases.},
author = {Roberts RJ, Macelis D.},
journal = {Nucleic Acids Res},
year = {1993},
doi = {10.1093/nar/21.13.3125},
pmid = {8392714}
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@article{lin7454,
title = {Cloning and sequence analysis of the genes encoding phosphotransbutyrylase and butyrate kinase from Clostridium acetobutylicum NCIMB 8052.},
author = {Oultram JD, Burr ID, Elmore MJ, Minton NP},
journal = {Gene},
year = {1993},
doi = {10.1016/0378-1119(93)90677-u},
pmid = {8396545}
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@article{lin7459,
title = {Sequence and arrangement of genes encoding enzymes of the acetone-production pathway of Clostridium acetobutylicum ATCC824.},
author = {Petersen DJ, Cary JW, Vanderleyden J, Bennett GN},
journal = {Gene},
year = {1993},
doi = {10.1016/0378-1119(93)90545-e},
pmid = {8423010}
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@article{lin99316,
title = {Electron microscopic analysis and structural characterization of novel NADP(H)-containing methanol: N,N'-dimethyl-4-nitrosoaniline oxidoreductases from the gram-positive methylotrophic bacteria Amycolatopsis methanolica and Mycobacterium gastri MB19.},
author = {Bystrykh LV, Vonck J, van Bruggen EF, van Beeumen J, Samyn B, Govorukhina NI, Arfman N, Duine JA, Dijkhuizen L.},
journal = {J Bacteriol},
year = {1993},
doi = {10.1128/jb.175.6.1814-1822.1993},
pmid = {8449887}
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@article{lin99253,
title = {Purification and characterization of an oxygen-labile, NAD-dependent alcohol dehydrogenase from Desulfovibrio gigas.},
author = {Hensgens CM, Vonck J, Van Beeumen J, van Bruggen EF, Hansen TA.},
journal = {J Bacteriol},
year = {1993},
doi = {10.1128/jb.175.10.2859-2863.1993},
pmid = {8491707}
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@article{lin99331,
title = {A bifunctional enzyme, with separate xylanase and beta(1,3-1,4)-glucanase domains, encoded by the xynD gene of Ruminococcus flavefaciens.},
author = {Flint HJ, Martin J, McPherson CA, Daniel AS, Zhang JX.},
journal = {J Bacteriol},
year = {1993},
doi = {10.1128/jb.175.10.2943-2951.1993},
pmid = {8491715}
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@article{lin98821,
title = {Sequence and molecular characterization of a DNA region encoding a small heat shock protein of Clostridium acetobutylicum.},
author = {Sauer U, Durre P.},
journal = {J Bacteriol},
year = {1993},
doi = {10.1128/jb.175.11.3394-3400.1993},
pmid = {8501044}
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@article{lin99192,
title = {Adhesion and growth rate of Clostridium cellulolyticum ATCC 35319 on crystalline cellulose.},
author = {Gelhaye E, Petitdemange H, Gay R.},
journal = {J Bacteriol},
year = {1993},
doi = {10.1128/jb.175.11.3452-3458.1993},
pmid = {8501049}
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@article{lin7456,
title = {Construction and characterization of a phage-plasmid hybrid (phagemid), pCAK1, containing the replicative form of viruslike particle CAK1 isolated from Clostridium acetobutylicum NCIB 6444.},
author = {Kim AY, Blaschek HP},
journal = {J Bacteriol},
year = {1993},
doi = {10.1128/jb.175.12.3838-3843.1993},
pmid = {8509336}
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@article{lin7457,
title = {Determination of plasmid copy number and stability in Clostridium acetobutylicum ATCC 824.},
author = {Lee SY, Mermelstein LD, Papoutsakis ET},
journal = {FEMS Microbiol Lett},
year = {1993},
doi = {10.1111/j.1574-6968.1993.tb06122.x},
pmid = {8514119}
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@article{lin99274,
title = {Purification and characterization of the extracellular alpha-amylase from Streptococcus bovis JB1.},
author = {Freer SN.},
journal = {Appl Environ Microbiol},
year = {1993},
doi = {10.1128/aem.59.5.1398-1402.1993},
pmid = {8517735}
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@article{lin99252,
title = {Molecular analysis of the anaerobic succinate degradation pathway in Clostridium kluyveri.},
author = {Sohling B, Gottschalk G.},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.3.871-880.1996},
pmid = {8550525}
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@article{lin7434,
title = {Molecular characterization and transcriptional analysis of the putative hydrogenase gene of Clostridium acetobutylicum ATCC 824.},
author = {Gorwa MF, Croux C, Soucaille P},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.9.2668-2675.1996},
pmid = {8626337}
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@article{lin7433,
title = {Recombination-induced variants of Clostridium acetobutylicum ATCC 824 with increased solvent production.},
author = {Wong J, Bennett GN},
journal = {Curr Microbiol},
year = {1996},
doi = {10.1007/s002849900062},
pmid = {8640107}
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@article{lin7432,
title = {Cloning, sequencing, and expression of clustered genes encoding beta-hydroxybutyryl-coenzyme A (CoA) dehydrogenase, crotonase, and butyryl-CoA dehydrogenase from Clostridium acetobutylicum ATCC 824.},
author = {Boynton ZL, Bennet GN, Rudolph FB},
journal = {J Bacteriol},
year = {1996},
doi = {10.1128/jb.178.11.3015-3024.1996},
pmid = {8655474}
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@article{lin7435,
title = {Inactivation of an aldehyde/alcohol dehydrogenase gene from Clostridium acetobutylicum ATCC 824.},
author = {Green EM, Bennett GN},
journal = {Appl Biochem Biotechnol},
year = {1996},
doi = {10.1007/BF02941702},
pmid = {8669898}
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@article{lin7431,
title = {Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824.},
author = {Boynton ZL, Bennett GN, Rudolph FB},
journal = {Appl Environ Microbiol},
year = {1996},
doi = {10.1128/aem.62.8.2758-2766.1996},
pmid = {8702268}
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@article{lin7430,
title = {Genetic manipulation of acid formation pathways by gene inactivation in Clostridium acetobutylicum ATCC 824.},
author = {Green EM, Boynton ZL, Harris LM, Rudolph FB, Papoutsakis ET, Bennett GN},
journal = {Microbiology (Reading)},
year = {1996},
doi = {10.1099/13500872-142-8-2079},
pmid = {8760920}
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@article{lin7472,
title = {Purification and characterization of the extracellular alpha-amylase from Clostridium acetobutylicum ATCC 824.},
author = {Paquet V, Croux C, Goma G, Soucaille P},
journal = {Appl Environ Microbiol},
year = {1991},
doi = {10.1128/aem.57.1.212-218.1991},
pmid = {8967771}
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@article{lin99344,
title = {Changes in the size and composition of intracellular pools of nonesterified coenzyme A and coenzyme A thioesters in aerobic and facultatively anaerobic bacteria.},
author = {Chohnan S, Furukawa H, Fujio T, Nishihara H, Takamura Y.},
journal = {Appl Environ Microbiol},
year = {1997},
doi = {10.1128/aem.63.2.553-560.1997},
pmid = {9023936}
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@article{lin99339,
title = {Reduction of conjugal transfer efficiency by three restriction activities of Anabaena sp. strain PCC 7120.},
author = {Elhai J, Vepritskiy A, Muro-Pastor AM, Flores E, Wolk CP.},
journal = {J Bacteriol},
year = {1997},
doi = {10.1128/jb.179.6.1998-2005.1997},
pmid = {9068647}
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@article{lin99117,
title = {Temperature-sensitive mutants of Corynebacterium ammoniagenes ATCC 6872 with a defective large subunit of the manganese-containing ribonucleotide reductase.},
author = {Luo C, Hansen J, Auling G.},
journal = {Arch Microbiol},
year = {1997},
doi = {10.1007/s002030050450},
pmid = {9094230}
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@article{lin7429,
title = {Cultures of "Clostridium acetobutylicum" from various collections comprise Clostridium acetobutylicum, Clostridium beijerinckii, and two other distinct types based on DNA-DNA reassociation.},
author = {Johnson JL, Toth J, Santiwatanakul S, Chen JS},
journal = {Int J Syst Bacteriol},
year = {1997},
doi = {10.1099/00207713-47-2-420},
pmid = {9103631}
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@article{lin98828,
title = {The kdp system of Clostridium acetobutylicum: cloning, sequencing, and transcriptional regulation in response to potassium concentration.},
author = {Treuner-Lange A, Kuhn A, Durre P.},
journal = {J Bacteriol},
year = {1997},
doi = {10.1128/jb.179.14.4501-4512.1997},
pmid = {9226259}
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@article{lin98839,
title = {PCR primers to amplify 16S rRNA genes from cyanobacteria.},
author = {Nubel U, Garcia-Pichel F, Muyzer G.},
journal = {Appl Environ Microbiol},
year = {1997},
doi = {10.1128/aem.63.8.3327-3332.1997},
pmid = {9251225}
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@article{lin7428,
title = {The genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 reside on a large plasmid whose loss leads to degeneration of the strain.},
author = {Cornillot E, Nair RV, Papoutsakis ET, Soucaille P},
journal = {J Bacteriol},
year = {1997},
doi = {10.1128/jb.179.17.5442-5447.1997},
pmid = {9286999}
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@article{lin7427,
title = {Acetate kinase from Clostridium acetobutylicum: a highly specific enzyme that is actively transcribed during acidogenesis and solventogenesis.},
author = {Winzer K, Lorenz K, DUrre P},
journal = {Microbiology (Reading)},
year = {1997},
doi = {10.1099/00221287-143-10-3279},
pmid = {9353928}
}
@article{lin7426,
title = {Physical and genetic map of the Clostridium acetobutylicum ATCC 824 chromosome.},
author = {Cornillot E, Croux C, Soucaille P},
journal = {J Bacteriol},
year = {1997},
doi = {10.1128/jb.179.23.7426-7434.1997},
pmid = {9393708}
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@article{lin99333,
title = {Purification and characterization of a novel thermostable alpha-L-arabinofuranosidase from a color-variant strain of Aureobasidium pullulans.},
author = {Saha BC, Bothast RJ.},
journal = {Appl Environ Microbiol},
year = {1998},
doi = {10.1128/aem.64.1.216-220.1998},
pmid = {9435077}
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@article{lin7425,
title = {Expression of Clostridium acetobutylicum ATCC 824 genes in Escherichia coli for acetone production and acetate detoxification.},
author = {Bermejo LL, Welker NE, Papoutsakis ET},
journal = {Appl Environ Microbiol},
year = {1998},
doi = {10.1128/AEM.64.3.1079-1085.1998},
pmid = {9501448}
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@article{lin7424,
title = {Complementation of an Escherichia coli polypeptide deformylase mutant with a gene from Clostridium acetobutylicum ATCC 824.},
author = {Belouski E, Gui L, Rudolph FB, Bennett GN},
journal = {Curr Microbiol},
year = {1998},
doi = {10.1007/s002849900304},
pmid = {9504995}
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@article{lin368974,
title = {A gene system for glucitol transport and metabolism in Clostridium beijerinckii NCIMB 8052.},
author = {Tangney M, Brehm JK, Minton NP, Mitchell WJ.},
journal = {Appl Environ Microbiol},
year = {1998},
doi = {10.1128/aem.64.5.1612-1619.1998},
pmid = {9572925}
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@article{lin99267,
title = {Truncation of peptide deformylase reduces the growth rate and stabilizes solvent production in Clostridium beijerinckii NCIMB 8052.},
author = {Evans VJ, Liyanage H, Ravagnani A, Young M, Kashket ER.},
journal = {Appl Environ Microbiol},
year = {1998},
doi = {10.1128/aem.64.5.1780-1785.1998},
pmid = {9572951}
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@article{lin7423,
title = {Cloning, sequence, and expression of the phosphofructokinase gene of Clostridium acetobutylicum ATCC 824 in Escherichia coli.},
author = {Belouski E, Watson DE, Bennett GN},
journal = {Curr Microbiol},
year = {1998},
doi = {10.1007/s002849900330},
pmid = {9625784}
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@article{lin7422,
title = {Regulation of the sol locus genes for butanol and acetone formation in Clostridium acetobutylicum ATCC 824 by a putative transcriptional repressor.},
author = {Nair RV, Green EM, Watson DE, Bennett GN, Papoutsakis ET},
journal = {J Bacteriol},
year = {1999},
doi = {10.1128/JB.181.1.319-330.1999},
pmid = {9864345}
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title = {Electroporation of, plasmid isolation from and plasmid conservation in Clostridium acetobutylicum DSM 792.},
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journal = {Appl Microbiol Biotechnol},
year = {1998},
doi = {10.1007/s002530051335},
pmid = {9866174}
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title = {Effect of acetate on molecular and physiological aspects of Clostridium beijerinckii NCIMB 8052 solvent production and strain degeneration.},
author = {Chen CK, Blaschek HP.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.2.499-505.1999},
pmid = {9925574}
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title = {Antisense RNA strategies for metabolic engineering of Clostridium acetobutylicum.},
author = {Desai RP, Papoutsakis ET},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/AEM.65.3.936-945.1999},
pmid = {10049845}
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@article{lin99163,
title = {Purification and characterization of two extremely thermostable enzymes, phosphate acetyltransferase and acetate kinase, from the hyperthermophilic eubacterium Thermotoga maritima.},
author = {Bock AK, Glasemacher J, Schmidt R, Schonheit P.},
journal = {J Bacteriol},
year = {1999},
doi = {10.1128/jb.181.6.1861-1867.1999},
pmid = {10074080}
}
@article{lin7419,
title = {Genetic manipulation of acid and solvent formation in clostridium acetobutylicum ATCC 824},
author = {Green EM, Bennett GN},
journal = {Biotechnol Bioeng},
year = {1998},
doi = {10.1002/(sici)1097-0290(19980420)58:2/3<215::aid-bit14>3.0.co;2-b},
pmid = {10191392}
}
@article{lin7418,
title = {Characterization of methylglyoxal synthase from Clostridium acetobutylicum ATCC 824 and its use in the formation of 1, 2-propanediol.},
author = {Huang K, Rudolph FB, Bennett GN},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/AEM.65.7.3244-3247.1999},
pmid = {10388730}
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@article{lin98837,
title = {Quantification of the flavonoid-degrading bacterium Eubacterium ramulus in human fecal samples with a species-specific oligonucleotide hybridization probe.},
author = {Simmering R, Kleessen B, Blaut M.},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/aem.65.8.3705-3709.1999},
pmid = {10427069}
}
@article{lin7417,
title = {The glyceraldehyde-3-phosphate dehydrogenase of Clostridium acetobutylicum: isolation and purification of the enzyme, and sequencing and localization of the gap gene within a cluster of other glycolytic genes.},
author = {Schreiber W, Durre P},
journal = {Microbiology (Reading)},
year = {1999},
doi = {10.1099/13500872-145-8-1839},
pmid = {10463150}
}
@article{lin7416,
title = {Development and characterization of a gene expression reporter system for Clostridium acetobutylicum ATCC 824.},
author = {Tummala SB, Welker NE, Papoutsakis ET},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/AEM.65.9.3793-3799.1999},
pmid = {10473377}
}
@article{lin7415,
title = {Stable Escherichia coli-Clostridium acetobutylicum shuttle vector for secretion of murine tumor necrosis factor alpha.},
author = {Theys J, Nuyts S, Landuyt W, Van Mellaert L, Dillen C, Bohringer M, Durre P, Lambin P, Anne J},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/AEM.65.10.4295-4300.1999},
pmid = {10508051}
}
@article{lin7414,
title = {The ald gene, encoding a coenzyme A-acylating aldehyde dehydrogenase, distinguishes Clostridium beijerinckii and two other solvent-producing clostridia from Clostridium acetobutylicum.},
author = {Toth J, Ismaiel AA, Chen JS},
journal = {Appl Environ Microbiol},
year = {1999},
doi = {10.1128/AEM.65.11.4973-4980.1999},
pmid = {10543811}
}
@article{lin99337,
title = {Quantification of different Eubacterium spp. in human fecal samples with species-specific 16S rRNA-targeted oligonucleotide probes.},
author = {Schwiertz A, Le Blay G, Blaut M.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.1.375-382.2000},
pmid = {10618251}
}
@article{lin99225,
title = {Broad-host-range shuttle vectors for screening of regulated promoter activity in viridans group streptococci: isolation of a pH-regulated promoter.},
author = {Vriesema AJ, Brinkman R, Kok J, Dankert J, Zaat SA.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.2.535-542.2000},
pmid = {10653715}
}
@article{lin99303,
title = {A shift from oral to blood pH is a stimulus for adaptive gene expression of Streptococcus gordonii CH1 and induces protection against oxidative stress and enhanced bacterial growth by expression of msrA.},
author = {Vriesema AJ, Dankert J, Zaat SA.},
journal = {Infect Immun},
year = {2000},
doi = {10.1128/iai.68.3.1061-1068.2000},
pmid = {10678908}
}
@article{lin7413,
title = {Electrotransformation of Clostridium acetobutylicum ATCC 824 using high-voltage radio frequency modulated square pulses.},
author = {Tyurin M, Padda R, Huang KX, Wardwell S, Caprette D, Bennett GN},
journal = {J Appl Microbiol},
year = {2000},
doi = {10.1046/j.1365-2672.2000.00032.x},
pmid = {10735989}
}
@article{lin99237,
title = {2,4,6-trinitrotoluene reduction by carbon monoxide dehydrogenase from Clostridium thermoaceticum.},
author = {Huang S, Lindahl PA, Wang C, Bennett GN, Rudolph FB, Hughes JB.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.4.1474-1478.2000},
pmid = {10742229}
}
@article{lin99194,
title = {Design and evaluation of a Lactobacillus manihotivorans species-specific rRNA-targeted hybridization probe and its application to the study of sour cassava fermentation.},
author = {Ampe F.},
journal = {Appl Environ Microbiol},
year = {2000},
doi = {10.1128/aem.66.5.2224-2226.2000},
pmid = {10788405}
}
@article{lin7412,
title = {Isolation of mesophilic solvent-producing clostridia from Colombian sources: physiological characterization, solvent production and polysaccharide hydrolysis.},
author = {Montoya D, Spitia S, Silva E, Schwarz WH},
journal = {J Biotechnol},
year = {2000},
doi = {10.1016/s0168-1656(00)00218-2},
pmid = {10812180}
}
@article{lin7411,
title = {Sequence analysis of the atp operon of Clostridium acetobutylicum DSM 792 encoding the F0F1 ATP synthase.},
author = {Externbrink T, Hujer S, Winzer K, Durre P},
journal = {DNA Seq},
year = {2000},
doi = {10.3109/10425170009033977},
pmid = {10902917}
}
@article{lin7410,
title = {Identification of two genes encoding putative new members of the ECF subfamily of eubacterial RNA polymerase sigma factors in Clostridium acetobutylicum.},
author = {Behrens S, Meyer U, Schankin H, Lonetto MA, Fischer RJ, Bahl H},
journal = {J Mol Microbiol Biotechnol},
year = {2000},
pmid = {10937434}
}
@article{lin7409,
title = {Identification and characterization of a second butyrate kinase from Clostridium acetobutylicum ATCC 824.},
author = {Huang KX, Huang S, Rudolph FB, Bennett GN},
journal = {J Mol Microbiol Biotechnol},
year = {2000},
pmid = {10937485}
}
@article{lin7407,
title = {Analysis of a catabolic operon for sucrose transport and metabolism in Clostridium acetobutylicum ATCC 824.},
author = {Tangney M, Mitchell WJ},
journal = {J Mol Microbiol Biotechnol},
year = {2000},
pmid = {10937490}
}
@article{lin7406,
title = {Utilisation of saccharides in extruded domestic organic waste by Clostridium acetobutylicum ATCC 824 for production of acetone, butanol and ethanol.},
author = {Lopez-Contreras AM, Claassen PA, Mooibroek H, De Vos WM},
journal = {Appl Microbiol Biotechnol},
year = {2000},
doi = {10.1007/s002530000374},
pmid = {10968627}
}
@article{lin7405,
title = {Spo0A directly controls the switch from acid to solvent production in solvent-forming clostridia.},
author = {Ravagnani A, Jennert KC, Steiner E, Grunberg R, Jefferies JR, Wilkinson SR, Young DI, Tidswell EC, Brown DP, Youngman P, Morris JG, Young M},
journal = {Mol Microbiol},
year = {2000},
doi = {10.1046/j.1365-2958.2000.02071.x},
pmid = {10972834}
}
@article{lin7404,
title = {Differential regulation of two thiolase genes from Clostridium acetobutylicum DSM 792.},
author = {Winzer K, Lorenz K, Zickner B, Durre P},
journal = {J Mol Microbiol Biotechnol},
year = {2000},
pmid = {11075929}
}
@article{lin99294,
title = {Control of hemA expression in Rhodobacter sphaeroides 2.4.1: effect of a transposon insertion in the hbdA gene.},
author = {Fales L, Kryszak L, Zeilstra-Ryalls J.},
journal = {J Bacteriol},
year = {2001},
doi = {10.1128/jb.183.5.1568-1576.2001},
pmid = {11160087}
}
@article{lin7403,
title = {Molecular analysis of the mannitol operon of Clostridium acetobutylicum encoding a phosphotransferase system and a putative PTS-modulated regulator.},
author = {Behrens S, Mitchell W, Bahl H},
journal = {Microbiology (Reading)},
year = {2001},
doi = {10.1099/00221287-147-1-75},
pmid = {11160802}
}
@article{lin99332,
title = {Characterization of the D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase gene (xfp) from Bifidobacterium lactis.},
author = {Meile L, Rohr LM, Geissmann TA, Herensperger M, Teuber M.},
journal = {J Bacteriol},
year = {2001},
doi = {10.1128/jb.183.9.2929-2936.2001},
pmid = {11292814}
}
@article{lin368971,
title = {Clostridium beijerinckii and Clostridium difficile detoxify methylglyoxal by a novel mechanism involving glycerol dehydrogenase.},
author = {Liyanage H, Kashket S, Young M, Kashket ER.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.5.2004-2010.2001},
pmid = {11319074}
}
@article{lin7402,
title = {Genome sequence and comparative analysis of the solvent-producing bacterium Clostridium acetobutylicum.},
author = {Nolling J, Breton G, Omelchenko MV, Makarova KS, Zeng Q, Gibson R, Lee HM, Dubois J, Qiu D, Hitti J, Wolf YI, Tatusov RL, Sabathe F, Doucette-Stamm L, Soucaille P, Daly MJ, Bennett GN, Koonin EV, Smith DR},
journal = {J Bacteriol},
year = {2001},
doi = {10.1128/JB.183.16.4823-4838.2001},
pmid = {11466286}
}
@article{lin99299,
title = {Clostridium beijerinckii cells expressing Neocallimastix patriciarum glycoside hydrolases show enhanced lichenan utilization and solvent production.},
author = {Lopez-Contreras AM, Smidt H, van der Oost J, Claassen PA, Mooibroek H, de Vos WM.},
journal = {Appl Environ Microbiol},
year = {2001},
doi = {10.1128/aem.67.11.5127-5133.2001},
pmid = {11679336}
}
@article{lin7401,
title = {Expression of the Klebsiella pneumoniae CG21 acetoin reductase gene in Clostridium acetobutylicum ATCC 824.},
author = {Wardwell SA, Yang YT, Chang HY, San KY, Rudolph FB, Bennett GN},
journal = {J Ind Microbiol Biotechnol},
year = {2001},
doi = {10.1038/sj.jim.7000179},
pmid = {11687934}
}
@article{lin99069,
title = {Characterization of the cell surface protein gene of Corynebacterium ammoniagenes.},
author = {Usuda Y, Kawasaki H, Utagawa T.},
journal = {Biochim Biophys Acta},
year = {2001},
doi = {10.1016/s0167-4781(01)00318-9},
pmid = {11750067}
}
@article{lin7400,
title = {Characterization of a maltose transport system in Clostridium acetobutylicum ATCC 824.},
author = {Tangney M, Winters GT, Mitchell WJ},
journal = {J Ind Microbiol Biotechnol},
year = {2001},
doi = {10.1038/sj.jim.7000125},
pmid = {11781805}
}
@article{lin7399,
title = {Orf5/SolR: a transcriptional repressor of the sol operon of Clostridium acetobutylicum?},
author = {Thormann K, Durre P},
journal = {J Ind Microbiol Biotechnol},
year = {2001},
doi = {10.1038/sj.jim.7000144},
pmid = {11781806}
}
@article{lin7398,
title = {Degeneration of solventogenic Clostridium strains monitored by Fourier transform infrared spectroscopy of bacterial cells.},
author = {Schuster KC, Goodacre R, Gapes JR, Young M},
journal = {J Ind Microbiol Biotechnol},
year = {2001},
doi = {10.1038/sj.jim.7000146},
pmid = {11781807}
}
@article{lin7397,
title = {Molecular characterization and transcriptional analysis of adhE2, the gene encoding the NADH-dependent aldehyde/alcohol dehydrogenase responsible for butanol production in alcohologenic cultures of Clostridium acetobutylicum ATCC 824.},
author = {Fontaine L, Meynial-Salles I, Girbal L, Yang X, Croux C, Soucaille P},
journal = {J Bacteriol},
year = {2002},
doi = {10.1128/JB.184.3.821-830.2002},
pmid = {11790753}
}
@article{lin98818,
title = {Control of butanol formation in Clostridium acetobutylicum by transcriptional activation.},
author = {Thormann K, Feustel L, Lorenz K, Nakotte S, Durre P.},
journal = {J Bacteriol},
year = {2002},
doi = {10.1128/jb.184.7.1966-1973.2002},
pmid = {11889105}
}
@article{lin100020,
title = {Transcriptional regulation of solventogenesis in Clostridium acetobutylicum.},
author = {Durre P, Bohringer M, Nakotte S, Schaffer S, Thormann K, Zickner B.},
journal = {J Mol Microbiol Biotechnol},
year = {2002},
pmid = {11931561}
}
@article{lin7396,
title = {amyP, a reporter gene to study strain degeneration in Clostridium acetobutylicum ATCC 824.},
author = {Sabathe F, Croux C, Cornillot E, Soucaille P},
journal = {FEMS Microbiol Lett},
year = {2002},
doi = {10.1111/j.1574-6968.2002.tb11165.x},
pmid = {12023083}
}
@article{lin7395,
title = {Northern, morphological, and fermentation analysis of spo0A inactivation and overexpression in Clostridium acetobutylicum ATCC 824.},
author = {Harris LM, Welker NE, Papoutsakis ET},
journal = {J Bacteriol},
year = {2002},
doi = {10.1128/JB.184.13.3586-3597.2002},
pmid = {12057953}
}
@article{lin7394,
title = {Molecular characterization and utilization of the CAK1 filamentous viruslike particle derived from Clostridium beijerinckii.},
author = {Li Y, Blaschek HP, Tan D},
journal = {J Ind Microbiol Biotechnol},
year = {2002},
doi = {10.1038/sj/jim/7000225},
pmid = {12074052}
}
@article{lin100026,
title = {Expression, purification, and characterization of recombinant nonphosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase from Clostridium acetobutylicum.},
author = {Iddar A, Valverde F, Serrano A, Soukri A.},
journal = {Protein Expr Purif},
year = {2002},
doi = {10.1016/s1046-5928(02)00032-3},
pmid = {12182834}
}
@article{lin7393,
title = {Characterization of the cellulolytic complex (cellulosome) of Clostridium acetobutylicum.},
author = {Sabathe F, Belaich A, Soucaille P},
journal = {FEMS Microbiol Lett},
year = {2002},
doi = {10.1111/j.1574-6968.2002.tb11450.x},
pmid = {12445640}
}
@article{lin99220,
title = {A segmental nearest neighbor normalization and gene identification method gives superior results for DNA-array analysis.},
author = {Yang H, Haddad H, Tomas C, Alsaker K, Papoutsakis ET.},
journal = {Proc Natl Acad Sci U S A},
year = {2003},
doi = {10.1073/pnas.0237337100},
pmid = {12529501}
}
@article{lin98832,
title = {Oligo-1,6-glucosidase and neopullulanase enzyme subfamilies from the alpha-amylase family defined by the fifth conserved sequence region.},
author = {Oslancova A, Janecek S.},
journal = {Cell Mol Life Sci},
year = {2002},
doi = {10.1007/pl00012517},
pmid = {12530525}
}
@article{lin368980,
title = {ISCce1 and ISCce2, two novel insertion sequences in Clostridium cellulolyticum.},
author = {Maamar H, de Philip P, Belaich JP, Tardif C.},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/jb.185.3.714-725.2003},
pmid = {12533447}
}
@article{lin99095,
title = {Characterization of the CipA scaffolding protein and in vivo production of a minicellulosome in Clostridium acetobutylicum.},
author = {Sabathe F, Soucaille P.},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/jb.185.3.1092-1096.2003},
pmid = {12533485}
}
@article{lin7392,
title = {Production by Clostridium acetobutylicum ATCC 824 of CelG, a cellulosomal glycoside hydrolase belonging to family 9.},
author = {Lopez-Contreras AM, Martens AA, Szijarto N, Mooibroek H, Claassen PA, van der Oost J, de Vos WM},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/AEM.69.2.869-877.2003},
pmid = {12571006}
}
@article{lin7391,
title = {Design of antisense RNA constructs for downregulation of the acetone formation pathway of Clostridium acetobutylicum.},
author = {Tummala SB, Welker NE, Papoutsakis ET},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/JB.185.6.1923-1934.2003},
pmid = {12618456}
}
@article{lin99033,
title = {2,4,6-trinitrotoluene reduction by an Fe-only hydrogenase in Clostridium acetobutylicum.},
author = {Watrous MM, Clark S, Kutty R, Huang S, Rudolph FB, Hughes JB, Bennett GN.},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/aem.69.3.1542-1547.2003},
pmid = {12620841}
}
@article{lin100000,
title = {Fedbatch operation using Clostridium acetobutylicum suspension culture as biocatalyst for enhancing hydrogen production.},
author = {Chin HL, Chen ZS, Chou CP.},
journal = {Biotechnol Prog},
year = {2003},
doi = {10.1021/bp0200604},
pmid = {12675576}
}
@article{lin7390,
title = {Biodegradation pathways of hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX) by Clostridium acetobutylicum cell-free extract.},
author = {Zhang C, Hughes JB},
journal = {Chemosphere},
year = {2003},
doi = {10.1016/s0045-6535(02)00639-2},
pmid = {12685743}
}
@article{lin99998,
title = {Translational selection is operative for synonymous codon usage in Clostridium perfringens and Clostridium acetobutylicum.},
author = {Musto H, Romero H, Zavala A.},
journal = {Microbiology (Reading)},
year = {2003},
doi = {10.1099/mic.0.26063-0},
pmid = {12686628}
}
@article{lin99317,
title = {Identification in methicillin-susceptible Staphylococcus hominis of an active primordial mobile genetic element for the staphylococcal cassette chromosome mec of methicillin-resistant Staphylococcus aureus.},
author = {Katayama Y, Takeuchi F, Ito T, Ma XX, Ui-Mizutani Y, Kobayashi I, Hiramatsu K.},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/jb.185.9.2711-2722.2003},
pmid = {12700250}
}
@article{lin99327,
title = {Molecular characterization of the 1,3-propanediol (1,3-PD) operon of Clostridium butyricum.},
author = {Raynaud C, Sarcabal P, Meynial-Salles I, Croux C, Soucaille P.},
journal = {Proc Natl Acad Sci U S A},
year = {2003},
doi = {10.1073/pnas.0734105100},
pmid = {12704244}
}
@article{lin7389,
title = {Expression of a cloned cyclopropane fatty acid synthase gene reduces solvent formation in Clostridium acetobutylicum ATCC 824.},
author = {Zhao Y, Hindorff LA, Chuang A, Monroe-Augustus M, Lyristis M, Harrison ML, Rudolph FB, Bennett GN},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/AEM.69.5.2831-2841.2003},
pmid = {12732555}
}
@article{lin100003,
title = {Sequences affecting the regulation of solvent production in Clostridium acetobutylicum.},
author = {Scotcher MC, Huang KX, Harrison ML, Rudolph FB, Bennett GN.},
journal = {J Ind Microbiol Biotechnol},
year = {2003},
doi = {10.1007/s10295-003-0057-x},
pmid = {12774196}
}
@article{lin7388,
title = {Antisense RNA downregulation of coenzyme A transferase combined with alcohol-aldehyde dehydrogenase overexpression leads to predominantly alcohologenic Clostridium acetobutylicum fermentations.},
author = {Tummala SB, Junne SG, Papoutsakis ET},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/JB.185.12.3644-3653.2003},
pmid = {12775702}
}
@article{lin99092,
title = {DNA array-based transcriptional analysis of asporogenous, nonsolventogenic Clostridium acetobutylicum strains SKO1 and M5.},
author = {Tomas CA, Alsaker KV, Bonarius HP, Hendriksen WT, Yang H, Beamish JA, Paredes CJ, Papoutsakis ET.},
journal = {J Bacteriol},
year = {2003},
doi = {10.1128/jb.185.15.4539-4547.2003},
pmid = {12867463}
}
@article{lin99993,
title = {Continuous cultures of Clostridium acetobutylicum: culture stability and low-grade glycerol utilisation.},
author = {Andrade JC, Vasconcelos I.},
journal = {Biotechnol Lett},
year = {2003},
doi = {10.1023/a:1021911217270},
pmid = {12882286}
}
@article{lin7387,
title = {Overexpression of groESL in Clostridium acetobutylicum results in increased solvent production and tolerance, prolonged metabolism, and changes in the cell's transcriptional program.},
author = {Tomas CA, Welker NE, Papoutsakis ET},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/AEM.69.8.4951-4965.2003},
pmid = {12902291}
}
@article{lin7386,
title = {Development of a sensitive gene expression reporter system and an inducible promoter-repressor system for Clostridium acetobutylicum.},
author = {Girbal L, Mortier-Barriere I, Raynaud F, Rouanet C, Croux C, Soucaille P},
journal = {Appl Environ Microbiol},
year = {2003},
doi = {10.1128/AEM.69.8.4985-4988.2003},
pmid = {12902297}
}
@article{lin100013,
title = {Heterologous expression of the Saccharomyces cerevisiae alcohol acetyltransferase genes in Clostridium acetobutylicum and Escherichia coli for the production of isoamyl acetate.},
author = {Horton CE, Huang KX, Bennett GN, Rudolph FB.},
journal = {J Ind Microbiol Biotechnol},
year = {2003},
doi = {10.1007/s10295-003-0070-0},
pmid = {12937998}
}
@article{lin99057,
title = {Isolation of transcription initiation signals from Corynebacterium ammoniagenes and comparison of their gene expression levels in C. ammoniagenes and Escherichia coli.},
author = {Paik JE, Lee BR.},
journal = {Biotechnol Lett},
year = {2003},
doi = {10.1023/a:1024947222046},
pmid = {14514058}
}
@article{lin7385,
title = {Genes malh and pagl of Clostridium acetobutylicum ATCC 824 encode NAD+- and Mn2+-dependent phospho-alpha-glucosidase(s).},
author = {Thompson J, Hess S, Pikis A},
journal = {J Biol Chem},
year = {2003},
doi = {10.1074/jbc.M310733200},
pmid = {14570887}
}
@article{lin7384,
title = {Analysis of the elements of catabolite repression in Clostridium acetobutylicum ATCC 824.},
author = {Tangney M, Galinier A, Deutscher J, Mitchell WJ},
journal = {J Mol Microbiol Biotechnol},
year = {2003},
doi = {10.1159/000073403},
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title = {Genomic analysis of the protein secretion systems in Clostridium acetobutylicum ATCC 824.},
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title = {S434F in NrdE generates the thermosensitive phenotype of corynebacterium ammoniagenes CH31 and enhances thermolability by increasing the surface hydrophobicity of the NrdE(Ts) protein.},
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title = {Characterization, Biosynthesis, and Regulation of Granulose in Clostridium acetobutylicum.},
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title = {Production of 1,3-Propanediol from Glycerol by Clostridium acetobutylicum and Other Clostridium Species.},
author = {Forsberg CW.},
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doi = {10.1128/aem.53.4.639-643.1987},
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title = {Purification and Characterization of Two Endoxylanases from Clostridium acetobutylicum ATCC 824.},
author = {Lee SF, Forsberg CW, Rattray JB},
journal = {Appl Environ Microbiol},
year = {1987},
doi = {10.1128/aem.53.4.644-650.1987},
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title = {Isolation and Some Properties of a beta-d-Xylosidase from Clostridium acetobutylicum ATCC 824.},
author = {Lee SF, Forsberg CW},
journal = {Appl Environ Microbiol},
year = {1987},
doi = {10.1128/aem.53.4.651-654.1987},
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@article{lin99209,
title = {Membrane H Conductance of Clostridium thermoaceticum and Clostridium acetobutylicum: Evidence for Electrogenic Na/H Antiport in Clostridium thermoaceticum.},
author = {Terracciano JS, Schreurs WJ, Kashket ER.},
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year = {1987},
doi = {10.1128/aem.53.4.782-786.1987},
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title = {Altered Electron Flow in Continuous Cultures of Clostridium acetobutylicum Induced by Viologen Dyes.},
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journal = {Appl Environ Microbiol},
year = {1987},
doi = {10.1128/aem.53.6.1232-1235.1987},
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author = {Adler HI, Crow W.},
journal = {Appl Environ Microbiol},
year = {1987},
doi = {10.1128/aem.53.10.2496-2499.1987},
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title = {Effect of Butanol Challenge and Temperature on Lipid Composition and Membrane Fluidity of Butanol-Tolerant Clostridium acetobutylicum.},
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doi = {10.1128/aem.53.12.2854-2861.1987},
pmid = {16347502}
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pmid = {19948846}
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title = {Metabolite stress and tolerance in the production of biofuels and chemicals: gene-expression-based systems analysis of butanol, butyrate, and acetate stresses in the anaerobe Clostridium acetobutylicum.},
author = {Alsaker KV, Paredes C, Papoutsakis ET.},
journal = {Biotechnol Bioeng},
year = {2010},
doi = {10.1002/bit.22628},
pmid = {19998280}
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title = {The [FeFe]-hydrogenase maturase HydF from Clostridium acetobutylicum contains a CO and CN- ligated iron cofactor.},
author = {Czech I, Silakov A, Lubitz W, Happe T.},
journal = {FEBS Lett},
year = {2010},
doi = {10.1016/j.febslet.2009.12.016},
pmid = {20018187}
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title = {Crystallization and preliminary X-ray analysis of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum.},
author = {Nishikawa K, Shomura Y, Kawasaki S, Niimura Y, Higuchi Y.},
journal = {Acta Crystallogr Sect F Struct Biol Cryst Commun},
year = {2010},
doi = {10.1107/s1744309109047162},
pmid = {20057062}
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title = {A genomic-library based discovery of a novel, possibly synthetic, acid-tolerance mechanism in Clostridium acetobutylicum involving non-coding RNAs and ribosomal RNA processing.},
author = {Borden JR, Jones SW, Indurthi D, Chen Y, Papoutsakis ET},
journal = {Metab Eng},
year = {2010},
doi = {10.1016/j.ymben.2009.12.004},
pmid = {20060060}
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@article{lin99100,
title = {Staphylococcal cassette chromosome mec-like element in Macrococcus caseolyticus.},
author = {Tsubakishita S, Kuwahara-Arai K, Baba T, Hiramatsu K.},
journal = {Antimicrob Agents Chemother},
year = {2010},
doi = {10.1128/aac.00575-09},
pmid = {20086147}
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@article{lin99151,
title = {Detection and quantification of functional genes of cellulose- degrading, fermentative, and sulfate-reducing bacteria and methanogenic archaea.},
author = {Pereyra LP, Hiibel SR, Prieto Riquelme MV, Reardon KF, Pruden A.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.01285-09},
pmid = {20139321}
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@article{lin99353,
title = {A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.},
author = {Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish JP, Lynch SV.},
journal = {OMICS},
year = {2010},
doi = {10.1089/omi.2009.0100},
pmid = {20141328}
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title = {Screening and characterization of butanol-tolerant micro-organisms.},
author = {Li J, Zhao JB, Zhao M, Yang YL, Jiang WH, Yang S.},
journal = {Lett Appl Microbiol},
year = {2010},
doi = {10.1111/j.1472-765x.2010.02808.x},
pmid = {20156308}
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@article{lin99840,
title = {Reconstructing the clostridial n-butanol metabolic pathway in Lactobacillus brevis.},
author = {Berezina OV, Zakharova NV, Brandt A, Yarotsky SV, Schwarz WH, Zverlov VV.},
journal = {Appl Microbiol Biotechnol},
year = {2010},
doi = {10.1007/s00253-010-2480-z},
pmid = {20195860}
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@article{lin99295,
title = {Protein tyrosine O-glycosylation--a rather unexplored prokaryotic glycosylation system.},
author = {Zarschler K, Janesch B, Pabst M, Altmann F, Messner P, Schaffer C.},
journal = {Glycobiology},
year = {2010},
doi = {10.1093/glycob/cwq035},
pmid = {20200052}
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@article{lin100010,
title = {GASdb: a large-scale and comparative exploration database of glycosyl hydrolysis systems.},
author = {Zhou F, Chen H, Xu Y.},
journal = {BMC Microbiol},
year = {2010},
doi = {10.1186/1471-2180-10-69},
pmid = {20202206}
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@article{lin99766,
title = {Butanol production by Clostridium acetobutylicum in a continuous packed bed reactor.},
author = {Napoli F, Olivieri G, Russo ME, Marzocchella A, Salatino P.},
journal = {J Ind Microbiol Biotechnol},
year = {2010},
doi = {10.1007/s10295-010-0707-8},
pmid = {20349108}
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@article{lin99180,
title = {Efficient recombinant expression and secretion of a thermostable GH26 mannan endo-1,4-beta-mannosidase from Bacillus licheniformis in Escherichia coli.},
author = {Songsiriritthigul C, Buranabanyat B, Haltrich D, Yamabhai M.},
journal = {Microb Cell Fact},
year = {2010},
doi = {10.1186/1475-2859-9-20},
pmid = {20380743}
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@article{lin99056,
title = {Reconstruction of xylose utilization pathway and regulons in Firmicutes.},
author = {Gu Y, Ding Y, Ren C, Sun Z, Rodionov DA, Zhang W, Yang S, Yang C, Jiang W.},
journal = {BMC Genomics},
year = {2010},
doi = {10.1186/1471-2164-11-255},
pmid = {20406496}
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@article{lin99322,
title = {Metabolic engineering for production of biorenewable fuels and chemicals: contributions of synthetic biology.},
author = {Jarboe LR, Zhang X, Wang X, Moore JC, Shanmugam KT, Ingram LO.},
journal = {J Biomed Biotechnol},
year = {2010},
doi = {10.1155/2010/761042},
pmid = {20414363}
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@article{lin99781,
title = {Proteome reference map and comparative proteomic analysis between a wild type Clostridium acetobutylicum DSM 1731 and its mutant with enhanced butanol tolerance and butanol yield.},
author = {Mao S, Luo Y, Zhang T, Li J, Bao G, Zhu Y, Chen Z, Zhang Y, Li Y, Ma Y.},
journal = {J Proteome Res},
year = {2010},
doi = {10.1021/pr9012078},
pmid = {20426490}
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title = {[Engineering and metabolic characteristics of a Clostridium tyrobutyricum strain].},
author = {Yang G, Liu G, Yang C.},
journal = {Sheng Wu Gong Cheng Xue Bao},
year = {2010},
pmid = {20432934}
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@article{lin99308,
title = {Regulation of neurotoxin production and sporulation by a Putative agrBD signaling system in proteolytic Clostridium botulinum.},
author = {Cooksley CM, Davis IJ, Winzer K, Chan WC, Peck MW, Minton NP.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.03038-09},
pmid = {20453132}
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@article{lin99357,
title = {The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.},
author = {Janssen PJ, Van Houdt R, Moors H, Monsieurs P, Morin N, Michaux A, Benotmane MA, Leys N, Vallaeys T, Lapidus A, Monchy S, Medigue C, Taghavi S, McCorkle S, Dunn J, van der Lelie D, Mergeay M.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0010433},
pmid = {20463976}
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@article{lin7343,
title = {Identification and inactivation of pleiotropic regulator CcpA to eliminate glucose repression of xylose utilization in Clostridium acetobutylicum.},
author = {Ren C, Gu Y, Hu S, Wu Y, Wang P, Yang Y, Yang C, Yang S, Jiang W},
journal = {Metab Eng},
year = {2010},
doi = {10.1016/j.ymben.2010.05.002},
pmid = {20478391}
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@article{lin99900,
title = {Identifying gene clusters within localized regions in multiple genomes.},
author = {Yang Q, Yi G, Zhang F, Thon MR, Sze SH.},
journal = {J Comput Biol},
year = {2010},
doi = {10.1089/cmb.2009.0116},
pmid = {20500020}
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@article{lin368978,
title = {Structural and enzymatic insights into the ATP binding and autophosphorylation mechanism of a sensor histidine kinase.},
author = {Trajtenberg F, Grana M, Ruetalo N, Botti H, Buschiazzo A.},
journal = {J Biol Chem},
year = {2010},
doi = {10.1074/jbc.m110.147843},
pmid = {20507988}
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@article{lin99185,
title = {Engineered respiro-fermentative metabolism for the production of biofuels and biochemicals from fatty acid-rich feedstocks.},
author = {Dellomonaco C, Rivera C, Campbell P, Gonzalez R.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.00046-10},
pmid = {20525863}
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@article{lin368973,
title = {Genomic sequence and characterization of the virulent bacteriophage phiCTP1 from Clostridium tyrobutyricum and heterologous expression of its endolysin.},
author = {Mayer MJ, Payne J, Gasson MJ, Narbad A.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.00989-10},
pmid = {20581196}
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@article{lin99846,
title = {Controlled assembly of hydrogenase-CdTe nanocrystal hybrids for solar hydrogen production.},
author = {Brown KA, Dayal S, Ai X, Rumbles G, King PW.},
journal = {J Am Chem Soc},
year = {2010},
doi = {10.1021/ja101031r},
pmid = {20583755}
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@article{lin99808,
title = {Enhancing clostridial acetone-butanol-ethanol (ABE) production and improving fuel properties of ABE-enriched biodiesel by extractive fermentation with biodiesel.},
author = {Li Q, Cai H, Hao B, Zhang C, Yu Z, Zhou S, Chenjuan L.},
journal = {Appl Biochem Biotechnol},
year = {2010},
doi = {10.1007/s12010-010-9010-4},
pmid = {20585897}
}
@article{lin99780,
title = {Expression, purification and characterization of two Clostridium acetobutylicum flavodoxins: potential electron transfer partners for CYP152A2.},
author = {Malca SH, Girhard M, Schuster S, Durre P, Urlacher VB.},
journal = {Biochim Biophys Acta},
year = {2011},
doi = {10.1016/j.bbapap.2010.06.013},
pmid = {20601217}
}
@article{lin99072,
title = {Systems-level metabolic flux profiling elucidates a complete, bifurcated tricarboxylic acid cycle in Clostridium acetobutylicum.},
author = {Amador-Noguez D, Feng XJ, Fan J, Roquet N, Rabitz H, Rabinowitz JD.},
journal = {J Bacteriol},
year = {2010},
doi = {10.1128/jb.00490-10},
pmid = {20622067}
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@article{lin99176,
title = {Assessment of heterologous butyrate and butanol pathway activity by measurement of intracellular pathway intermediates in recombinant Escherichia coli.},
author = {Fischer CR, Tseng HC, Tai M, Prather KL, Stephanopoulos G.},
journal = {Appl Microbiol Biotechnol},
year = {2010},
doi = {10.1007/s00253-010-2749-2},
pmid = {20625717}
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@article{lin99751,
title = {Metabolite analysis of Clostridium acetobutylicum: fermentation in a microbial fuel cell.},
author = {Finch AS, Mackie TD, Sund CJ, Sumner JJ.},
journal = {Bioresour Technol},
year = {2011},
doi = {10.1016/j.biortech.2010.06.149},
pmid = {20655198}
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@article{lin99784,
title = {Transcriptional analysis of differential carbohydrate utilization by Clostridium acetobutylicum.},
author = {Servinsky MD, Kiel JT, Dupuy NF, Sund CJ.},
journal = {Microbiology (Reading)},
year = {2010},
doi = {10.1099/mic.0.037085-0},
pmid = {20656779}
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@article{lin99247,
title = {Chitin utilization by the insect-transmitted bacterium Xylella fastidiosa.},
author = {Killiny N, Prado SS, Almeida RP.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.01036-10},
pmid = {20656858}
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@article{lin99807,
title = {Genome-scale metabolic modeling of a clostridial co-culture for consolidated bioprocessing.},
author = {Salimi F, Zhuang K, Mahadevan R.},
journal = {Biotechnol J},
year = {2010},
doi = {10.1002/biot.201000159},
pmid = {20665645}
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@article{lin98990,
title = {A tyrosyl-dimanganese coupled spin system is the native metalloradical cofactor of the R2F subunit of the ribonucleotide reductase of Corynebacterium ammoniagenes.},
author = {Cox N, Ogata H, Stolle P, Reijerse E, Auling G, Lubitz W.},
journal = {J Am Chem Soc},
year = {2010},
doi = {10.1021/ja1036995},
pmid = {20698687}
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@article{lin99288,
title = {Characterization of Lactococcus lactis phage 949 and comparison with other lactococcal phages.},
author = {Samson JE, Moineau S.},
journal = {Appl Environ Microbiol},
year = {2010},
doi = {10.1128/aem.00796-10},
pmid = {20802084}
}
@article{lin99749,
title = {U(VI) reduction by spores of Clostridium acetobutylicum.},
author = {Vecchia ED, Veeramani H, Suvorova EI, Wigginton NS, Bargar JR, Bernier-Latmani R.},
journal = {Res Microbiol},
year = {2010},
doi = {10.1016/j.resmic.2010.08.001},
pmid = {20863883}
}
@article{lin99767,
title = {Transcriptional analysis of catabolite repression in Clostridium acetobutylicum growing on mixtures of D-glucose and D-xylose.},
author = {Grimmler C, Held C, Liebl W, Ehrenreich A.},
journal = {J Biotechnol},
year = {2010},
doi = {10.1016/j.jbiotec.2010.09.938},
pmid = {20883732}
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@article{lin99029,
title = {Genomic analysis of carbon monoxide utilization and butanol production by Clostridium carboxidivorans strain P7.},
author = {Bruant G, Levesque MJ, Peter C, Guiot SR, Masson L.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0013033},
pmid = {20885952}
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@article{lin7342,
title = {Continuous lactose fermentation by Clostridium acetobutylicum--assessment of acidogenesis kinetics.},
author = {Napoli F, Olivieri G, Russo ME, Marzocchella A, Salatino P},
journal = {Bioresour Technol},
year = {2010},
doi = {10.1016/j.biortech.2010.09.004},
pmid = {20889336}
}
@article{lin7341,
title = {Improving the Clostridium acetobutylicum butanol fermentation by engineering the strain for co-production of riboflavin.},
author = {Cai X, Bennett GN},
journal = {J Ind Microbiol Biotechnol},
year = {2010},
doi = {10.1007/s10295-010-0875-6},
pmid = {20931261}
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@article{lin99169,
title = {Clostridium sticklandii, a specialist in amino acid degradation:revisiting its metabolism through its genome sequence.},
author = {Fonknechten N, Chaussonnerie S, Tricot S, Lajus A, Andreesen JR, Perchat N, Pelletier E, Gouyvenoux M, Barbe V, Salanoubat M, Le Paslier D, Weissenbach J, Cohen GN, Kreimeyer A.},
journal = {BMC Genomics},
year = {2010},
doi = {10.1186/1471-2164-11-555},
pmid = {20937090}
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@article{lin99109,
title = {In silico characterization of pectate lyase protein sequences from different source organisms.},
author = {Dubey AK, Yadav S, Kumar M, Singh VK, Sarangi BK, Yadav D.},
journal = {Enzyme Res},
year = {2010},
doi = {10.4061/2010/950230},
pmid = {21048874}
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@article{lin99785,
title = {The [FeFe]-hydrogenase maturation protein HydF contains a H-cluster like [4Fe4S]-2Fe site.},
author = {Czech I, Stripp S, Sanganas O, Leidel N, Happe T, Haumann M.},
journal = {FEBS Lett},
year = {2011},
doi = {10.1016/j.febslet.2010.11.052},
pmid = {21130763}
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@article{lin98957,
title = {Large number of phosphotransferase genes in the Clostridium beijerinckii NCIMB 8052 genome and the study on their evolution.},
author = {Shi Y, Li YX, Li YY.},
journal = {BMC Bioinformatics},
year = {2010},
doi = {10.1186/1471-2105-11-s11-s9},
pmid = {21172059}
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@article{lin99901,
title = {A new dehydrogenase from Clostridium acetobutylicum for asymmetric synthesis: dynamic reductive kinetic resolution entry into the Taxotère side chain.},
author = {Applegate GA, Cheloha RW, Nelson DL, Berkowitz DB.},
journal = {Chem Commun (Camb)},
year = {2011},
doi = {10.1039/c0cc04585c},
pmid = {21173953}
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@article{lin99175,
title = {Development and application of a method for counterselectable in-frame deletion in Clostridium perfringens.},
author = {Nariya H, Miyata S, Suzuki M, Tamai E, Okabe A.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.01572-10},
pmid = {21183644}
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@article{lin99756,
title = {Genome-wide gene expression analysis of the switch between acidogenesis and solventogenesis in continuous cultures of Clostridium acetobutylicum.},
author = {Grimmler C, Janssen H, Krausse D, Fischer RJ, Bahl H, Durre P, Liebl W, Ehrenreich A.},
journal = {J Mol Microbiol Biotechnol},
year = {2011},
doi = {10.1159/000320973},
pmid = {21212688}
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@article{lin99024,
title = {Formic acid triggers the "Acid Crash" of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.},
author = {Wang S, Zhang Y, Dong H, Mao S, Zhu Y, Wang R, Luan G, Li Y.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.01835-10},
pmid = {21216898}
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@article{lin99773,
title = {[Comparative genomic reconstruction of regulatory and metabolic networks in bacteria].},
author = {Yang C.},
journal = {Sheng Wu Gong Cheng Xue Bao},
year = {2010},
pmid = {21218621}
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@article{lin99747,
title = {[Phosphoproteomic investigation of Clostridium acetobutylicum].},
author = {Bai X, Zhao J, Wang Q, Tong W, Zhang J, Zi J, Chen Z, Liu S, Wang Q.},
journal = {Sheng Wu Gong Cheng Xue Bao},
year = {2010},
pmid = {21218622}
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@article{lin99726,
title = {[Genetic modification systems for Clostridium acetobutylicum].},
author = {Dong H, Zhang Y, Li Y.},
journal = {Sheng Wu Gong Cheng Xue Bao},
year = {2010},
pmid = {21218624}
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title = {Performance of batch, fed-batch, and continuous A-B-E fermentation with pH-control.},
author = {Li SY, Srivastava R, Suib SL, Li Y, Parnas RS.},
journal = {Bioresour Technol},
year = {2011},
doi = {10.1016/j.biortech.2010.12.078},
pmid = {21227684}
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@article{lin99140,
title = {Cyclopropane fatty acids are involved in organic solvent tolerance but not in acid stress resistance in Pseudomonas putida DOT-T1E.},
author = {Pini CV, Bernal P, Godoy P, Ramos JL, Segura A.},
journal = {Microb Biotechnol},
year = {2009},
doi = {10.1111/j.1751-7915.2009.00084.x},
pmid = {21261919}
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@article{lin99044,
title = {Small RNAs in the genus Clostridium.},
author = {Chen Y, Indurthi DC, Jones SW, Papoutsakis ET.},
journal = {mBio},
year = {2011},
doi = {10.1128/mbio.00340-10},
pmid = {21264064}
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@article{lin7339,
title = {Comparative genomic and transcriptomic analysis revealed genetic characteristics related to solvent formation and xylose utilization in Clostridium acetobutylicum EA 2018.},
author = {Hu S, Zheng H, Gu Y, Zhao J, Zhang W, Yang Y, Wang S, Zhao G, Yang S, Jiang W},
journal = {BMC Genomics},
year = {2011},
doi = {10.1186/1471-2164-12-93},
pmid = {21284892}
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@article{lin99722,
title = {Engineering the robustness of Clostridium acetobutylicum by introducing glutathione biosynthetic capability.},
author = {Zhu L, Dong H, Zhang Y, Li Y.},
journal = {Metab Eng},
year = {2011},
doi = {10.1016/j.ymben.2011.01.009},
pmid = {21296183}
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@article{lin99159,
title = {Molecular breeding of advanced microorganisms for biofuel production.},
author = {Sakuragi H, Kuroda K, Ueda M.},
journal = {J Biomed Biotechnol},
year = {2011},
doi = {10.1155/2011/416931},
pmid = {21318120}
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@article{lin99881,
title = {The quest for a functional substrate access tunnel in FeFe hydrogenase.},
author = {Lautier T, Ezanno P, Baffert C, Fourmond V, Cournac L, Fontecilla-Camps JC, Soucaille P, Bertrand P, Meynial-Salles I, Leger C.},
journal = {Faraday Discuss},
year = {2011},
doi = {10.1039/c004099c},
pmid = {21322495}
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@article{lin7337,
title = {D-2,3-butanediol production due to heterologous expression of an acetoin reductase in Clostridium acetobutylicum.},
author = {Siemerink MA, Kuit W, Lopez Contreras AM, Eggink G, van der Oost J, Kengen SW},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/AEM.01616-10},
pmid = {21335380}
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@article{lin7336,
title = {Resolving the TCA cycle and pentose-phosphate pathway of Clostridium acetobutylicum ATCC 824: Isotopomer analysis, in vitro activities and expression analysis.},
author = {Crown SB, Indurthi DC, Ahn WS, Choi J, Papoutsakis ET, Antoniewicz MR},
journal = {Biotechnol J},
year = {2010},
doi = {10.1002/biot.201000282},
pmid = {21370473}
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@article{lin99718,
title = {Metabolic engineering of Clostridium acetobutylicum: recent advances to improve butanol production.},
author = {Lutke-Eversloh T, Bahl H.},
journal = {Curr Opin Biotechnol},
year = {2011},
doi = {10.1016/j.copbio.2011.01.011},
pmid = {21377350}
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@article{lin7335,
title = {The issue of secretion in heterologous expression of Clostridium cellulolyticum cellulase-encoding genes in Clostridium acetobutylicum ATCC 824.},
author = {Mingardon F, Chanal A, Tardif C, Fierobe HP},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/AEM.03012-10},
pmid = {21378034}
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@article{lin99741,
title = {Comparative analysis on the membrane proteome of Clostridium acetobutylicum wild type strain and its butanol-tolerant mutant.},
author = {Mao S, Luo Y, Bao G, Zhang Y, Li Y, Ma Y.},
journal = {Mol Biosyst},
year = {2011},
doi = {10.1039/c0mb00330a},
pmid = {21384033}
}
@article{lin99794,
title = {High-performance hydrogen production and oxidation electrodes with hydrogenase supported on metallic single-wall carbon nanotube networks.},
author = {Svedruzic D, Blackburn JL, Tenent RC, Rocha JD, Vinzant TB, Heben MJ, King PW.},
journal = {J Am Chem Soc},
year = {2011},
doi = {10.1021/ja104785e},
pmid = {21384925}
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@article{lin99019,
title = {Multiple orphan histidine kinases interact directly with Spo0A to control the initiation of endospore formation in Clostridium acetobutylicum.},
author = {Steiner E, Dago AE, Young DI, Heap JT, Minton NP, Hoch JA, Young M.},
journal = {Mol Microbiol},
year = {2011},
doi = {10.1111/j.1365-2958.2011.07608.x},
pmid = {21401736}
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@article{lin7333,
title = {Inactivation of sigmaF in Clostridium acetobutylicum ATCC 824 blocks sporulation prior to asymmetric division and abolishes sigmaE and sigmaG protein expression but does not block solvent formation.},
author = {Jones SW, Tracy BP, Gaida SM, Papoutsakis ET},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/JB.00088-11},
pmid = {21421765}
}
@article{lin99745,
title = {Ancestral sporulation initiation.},
author = {Durre P.},
journal = {Mol Microbiol},
year = {2011},
doi = {10.1111/j.1365-2958.2011.07628.x},
pmid = {21435030}
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@article{lin99284,
title = {Phylogenetic distribution and evolutionary history of bacterial DEAD-Box proteins.},
author = {Lopez-Ramirez V, Alcaraz LD, Moreno-Hagelsieb G, Olmedo-Alvarez G.},
journal = {J Mol Evol},
year = {2011},
doi = {10.1007/s00239-011-9441-8},
pmid = {21437710}
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@article{lin99275,
title = {The genome of Erysipelothrix rhusiopathiae, the causative agent of swine erysipelas, reveals new insights into the evolution of firmicutes and the organism's intracellular adaptations.},
author = {Ogawa Y, Ooka T, Shi F, Ogura Y, Nakayama K, Hayashi T, Shimoji Y.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.01500-10},
pmid = {21478354}
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@article{lin99251,
title = {Swiftly computing center strings.},
author = {Hufsky F, Kuchenbecker L, Jahn K, Stoye J, Bocker S.},
journal = {BMC Bioinformatics},
year = {2011},
doi = {10.1186/1471-2105-12-106},
pmid = {21504573}
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@article{lin99272,
title = {Fourteen-genome comparison identifies DNA markers for severe-disease-associated strains of Clostridium difficile.},
author = {Forgetta V, Oughton MT, Marquis P, Brukner I, Blanchette R, Haub K, Magrini V, Mardis ER, Gerding DN, Loo VG, Miller MA, Mulvey MR, Rupnik M, Dascal A, Dewar K.},
journal = {J Clin Microbiol},
year = {2011},
doi = {10.1128/jcm.00391-11},
pmid = {21508155}
}
@article{lin7332,
title = {Metabolic engineering of Clostridium tyrobutyricum for n-butanol production.},
author = {Yu M, Zhang Y, Tang IC, Yang ST},
journal = {Metab Eng},
year = {2011},
doi = {10.1016/j.ymben.2011.04.002},
pmid = {21530675}
}
@article{lin99729,
title = {Switching Clostridium acetobutylicum to an ethanol producer by disruption of the butyrate/butanol fermentative pathway.},
author = {Lehmann D, Lutke-Eversloh T.},
journal = {Metab Eng},
year = {2011},
doi = {10.1016/j.ymben.2011.04.006},
pmid = {21549853}
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@article{lin99770,
title = {Metabolic engineering of cyanobacteria for 1-butanol production from carbon dioxide.},
author = {Lan EI, Liao JC.},
journal = {Metab Eng},
year = {2011},
doi = {10.1016/j.ymben.2011.04.004},
pmid = {21569861}
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@article{lin99157,
title = {SORGOdb: Superoxide Reductase Gene Ontology curated DataBase.},
author = {Lucchetti-Miganeh C, Goudenege D, Thybert D, Salbert G, Barloy-Hubler F.},
journal = {BMC Microbiol},
year = {2011},
doi = {10.1186/1471-2180-11-105},
pmid = {21575179}
}
@article{lin99062,
title = {Meta-analysis and functional validation of nutritional requirements of solventogenic Clostridia growing under butanol stress conditions and coutilization of D-glucose and D-xylose.},
author = {Heluane H, Evans MR, Dagher SF, Bruno-Barcena JM.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.00116-11},
pmid = {21602379}
}
@article{lin99120,
title = {A synthetic system links FeFe-hydrogenases to essential E. coli sulfur metabolism.},
author = {Barstow B, Agapakis CM, Boyle PM, Grandl G, Silver PA, Wintermute EH.},
journal = {J Biol Eng},
year = {2011},
doi = {10.1186/1754-1611-5-7},
pmid = {21615937}
}
@article{lin99210,
title = {Site-specific mobilization of vinyl chloride respiration islands by a mechanism common in Dehalococcoides.},
author = {McMurdie PJ, Hug LA, Edwards EA, Holmes S, Spormann AM.},
journal = {BMC Genomics},
year = {2011},
doi = {10.1186/1471-2164-12-287},
pmid = {21635780}
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@article{lin99777,
title = {Zero-power autonomous buoyancy system controlled by microbial gas production.},
author = {Wu PK, Fitzgerald LA, Biffinger JC, Spargo BJ, Houston BH, Bucaro JA, Ringeisen BR.},
journal = {Rev Sci Instrum},
year = {2011},
doi = {10.1063/1.3587623},
pmid = {21639539}
}
@article{lin99690,
title = {CAC2634-disrupted mutant of Clostridium acetobutylicum can be electrotransformed in air.},
author = {Dong H, Tao W, Zhu L, Zhang Y, Li Y.},
journal = {Lett Appl Microbiol},
year = {2011},
doi = {10.1111/j.1472-765x.2011.03111.x},
pmid = {21711370}
}
@article{lin7331,
title = {Complete genome sequence of Clostridium acetobutylicum DSM 1731, a solvent-producing strain with multireplicon genome architecture.},
author = {Bao G, Wang R, Zhu Y, Dong H, Mao S, Zhang Y, Chen Z, Li Y, Ma Y},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/JB.05596-11},
pmid = {21742891}
}
@article{lin99005,
title = {Butanol production from crystalline cellulose by cocultured Clostridium thermocellum and Clostridium saccharoperbutylacetonicum N1-4.},
author = {Nakayama S, Kiyoshi K, Kadokura T, Nakazato A.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.00706-11},
pmid = {21764954}
}
@article{lin98975,
title = {Scaffoldin modules serving as "cargo" domains to promote the secretion of heterologous cellulosomal cellulases by Clostridium acetobutylicum.},
author = {Chanal A, Mingardon F, Bauzan M, Tardif C, Fierobe HP.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.00758-11},
pmid = {21764966}
}
@article{lin7330,
title = {SpoIIE is necessary for asymmetric division, sporulation, and expression of sigmaF, sigmaE, and sigmaG but does not control solvent production in Clostridium acetobutylicum ATCC 824.},
author = {Bi C, Jones SW, Hess DR, Tracy BP, Papoutsakis ET},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/JB.05474-11},
pmid = {21784928}
}
@article{lin99018,
title = {Characterization of an N-acetylmuramic acid/N-acetylglucosamine kinase of Clostridium acetobutylicum.},
author = {Reith J, Berking A, Mayer C.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.05514-11},
pmid = {21784936}
}
@article{lin99032,
title = {Characterization of a glucosamine/glucosaminide N-acetyltransferase of Clostridium acetobutylicum.},
author = {Reith J, Mayer C.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.05519-11},
pmid = {21784938}
}
@article{lin99181,
title = {Structure and activity of Paenibacillus polymyxa xyloglucanase from glycoside hydrolase family 44.},
author = {Ariza A, Eklof JM, Spadiut O, Offen WA, Roberts SM, Besenmatter W, Friis EP, Skjot M, Wilson KS, Brumer H, Davies G.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m111.262345},
pmid = {21795708}
}
@article{lin99764,
title = {Peptidoglycan turnover and recycling in Gram-positive bacteria.},
author = {Reith J, Mayer C.},
journal = {Appl Microbiol Biotechnol},
year = {2011},
doi = {10.1007/s00253-011-3486-x},
pmid = {21796380}
}
@article{lin99896,
title = {ClosTron-mediated engineering of Clostridium.},
author = {Kuehne SA, Heap JT, Cooksley CM, Cartman ST, Minton NP.},
journal = {Methods Mol Biol},
year = {2011},
doi = {10.1007/978-1-61779-197-0_23},
pmid = {21815105}
}
@article{lin99311,
title = {Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.},
author = {Milne CB, Eddy JA, Raju R, Ardekani S, Kim PJ, Senger RS, Jin YS, Blaschek HP, Price ND.},
journal = {BMC Syst Biol},
year = {2011},
doi = {10.1186/1752-0509-5-130},
pmid = {21846360}
}
@article{lin99197,
title = {Inability of Prevotella bryantii to form a functional Shine-Dalgarno interaction reflects unique evolution of ribosome binding sites in Bacteroidetes.},
author = {Accetto T, Avgustin G.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0022914},
pmid = {21857964}
}
@article{lin99307,
title = {CsrA-FliW interaction governs flagellin homeostasis and a checkpoint on flagellar morphogenesis in Bacillus subtilis.},
author = {Mukherjee S, Yakhnin H, Kysela D, Sokoloski J, Babitzke P, Kearns DB.},
journal = {Mol Microbiol},
year = {2011},
doi = {10.1111/j.1365-2958.2011.07822.x},
pmid = {21895793}
}
@article{lin99776,
title = {Catalytic turnover of [FeFe]-hydrogenase based on single-molecule imaging.},
author = {Madden C, Vaughn MD, Diez-Perez I, Brown KA, King PW, Gust D, Moore AL, Moore TA.},
journal = {J Am Chem Soc},
year = {2012},
doi = {10.1021/ja207461t},
pmid = {21916466}
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@article{lin99068,
title = {Itaconic acid is a mammalian metabolite induced during macrophage activation.},
author = {Strelko CL, Lu W, Dufort FJ, Seyfried TN, Chiles TC, Rabinowitz JD, Roberts MF.},
journal = {J Am Chem Soc},
year = {2011},
doi = {10.1021/ja2070889},
pmid = {21919507}
}
@article{lin7329,
title = {Biotransformation of furfural and 5-hydroxymethyl furfural (HMF) by Clostridium acetobutylicum ATCC 824 during butanol fermentation.},
author = {Zhang Y, Han B, Ezeji TC},
journal = {N Biotechnol},
year = {2011},
doi = {10.1016/j.nbt.2011.09.001},
pmid = {21925629}
}
@article{lin7328,
title = {Confirmation and elimination of xylose metabolism bottlenecks in glucose phosphoenolpyruvate-dependent phosphotransferase system-deficient Clostridium acetobutylicum for simultaneous utilization of glucose, xylose, and arabinose.},
author = {Xiao H, Gu Y, Ning Y, Yang Y, Mitchell WJ, Jiang W, Yang S},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/AEM.00644-11},
pmid = {21926197}
}
@article{lin99206,
title = {Engineering Escherichia coli for biodiesel production utilizing a bacterial fatty acid methyltransferase.},
author = {Nawabi P, Bauer S, Kyrpides N, Lykidis A.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.05046-11},
pmid = {21926202}
}
@article{lin99309,
title = {O2 reactions at the six-iron active site (H-cluster) in [FeFe]-hydrogenase.},
author = {Lambertz C, Leidel N, Havelius KG, Noth J, Chernev P, Winkler M, Happe T, Haumann M.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m111.283648},
pmid = {21930709}
}
@article{lin99701,
title = {Controlling the oxidoreduction potential of the culture of Clostridium acetobutylicum leads to an earlier initiation of solventogenesis, thus increasing solvent productivity.},
author = {Wang S, Zhu Y, Zhang Y, Li Y.},
journal = {Appl Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s00253-011-3570-2},
pmid = {21935591}
}
@article{lin99074,
title = {Metabolome remodeling during the acidogenic-solventogenic transition in Clostridium acetobutylicum.},
author = {Amador-Noguez D, Brasg IA, Feng XJ, Roquet N, Rabinowitz JD.},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/aem.05374-11},
pmid = {21948824}
}
@article{lin99160,
title = {Single-nucleotide resolution analysis of the transcriptome structure of Clostridium beijerinckii NCIMB 8052 using RNA-Seq.},
author = {Wang Y, Li X, Mao Y, Blaschek HP.},
journal = {BMC Genomics},
year = {2011},
doi = {10.1186/1471-2164-12-479},
pmid = {21962126}
}
@article{lin7327,
title = {Continuous acetone-butanol-ethanol fermentation using SO2-ethanol-water spent liquor from spruce.},
author = {Survase SA, Sklavounos E, Jurgens G, van Heiningen A, Granstrom T},
journal = {Bioresour Technol},
year = {2011},
doi = {10.1016/j.biortech.2011.09.034},
pmid = {21974878}
}
@article{lin7326,
title = {Comparative shotgun proteomic analysis of Clostridium acetobutylicum from butanol fermentation using glucose and xylose.},
author = {Sivagnanam K, Raghavan VG, Shah M, Hettich RL, Verberkmoes NC, Lefsrud MG},
journal = {Proteome Sci},
year = {2011},
doi = {10.1186/1477-5956-9-66},
pmid = {22008648}
}
@article{lin7325,
title = {DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules.},
author = {Hendrix W, Rocha AM, Padmanabhan K, Choudhary A, Scott K, Mihelcic JR, Samatova NF},
journal = {BMC Syst Biol},
year = {2011},
doi = {10.1186/1752-0509-5-172},
pmid = {22024446}
}
@article{lin7324,
title = {Improving fatty acid production in Escherichia coli through the overexpression of malonyl coA-acyl carrier protein transacylase.},
author = {Zhang X, Agrawal A, San KY},
journal = {Biotechnol Prog},
year = {2011},
doi = {10.1002/btpr.716},
pmid = {22038854}
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@article{lin99706,
title = {Development of an anhydrotetracycline-inducible gene expression system for solvent-producing Clostridium acetobutylicum: A useful tool for strain engineering.},
author = {Dong H, Tao W, Zhang Y, Li Y.},
journal = {Metab Eng},
year = {2012},
doi = {10.1016/j.ymben.2011.10.004},
pmid = {22056607}
}
@article{lin99131,
title = {An alternative path for the evolution of biological nitrogen fixation.},
author = {Boyd ES, Hamilton TL, Peters JW.},
journal = {Front Microbiol},
year = {2011},
doi = {10.3389/fmicb.2011.00205},
pmid = {22065963}
}
@article{lin99256,
title = {Dehydratase mediated 1-propanol production in metabolically engineered Escherichia coli.},
author = {Jain R, Yan Y.},
journal = {Microb Cell Fact},
year = {2011},
doi = {10.1186/1475-2859-10-97},
pmid = {22074179}
}
@article{lin99170,
title = {Efficient alpha, beta-motif finder for identification of phenotype-related functional modules.},
author = {Schmidt MC, Rocha AM, Padmanabhan K, Chen Z, Scott K, Mihelcic JR, Samatova NF.},
journal = {BMC Bioinformatics},
year = {2011},
doi = {10.1186/1471-2105-12-440},
pmid = {22078292}
}
@article{lin99755,
title = {Fed-batch fermentation for n-butanol production from cassava bagasse hydrolysate in a fibrous bed bioreactor with continuous gas stripping.},
author = {Lu C, Zhao J, Yang ST, Wei D.},
journal = {Bioresour Technol},
year = {2012},
doi = {10.1016/j.biortech.2011.10.089},
pmid = {22101071}
}
@article{lin99717,
title = {Use of poly(ether-block-amide) in pervaporation coupling with a fermentor to enhance butanol production in the cultivation of Clostridium acetobutylicum.},
author = {Yen HW, Lin SF, Yang IK.},
journal = {J Biosci Bioeng},
year = {2012},
doi = {10.1016/j.jbiosc.2011.10.025},
pmid = {22137040}
}
@article{lin99730,
title = {Use of proteomic tools in microbial engineering for biofuel production.},
author = {Mao S, Jia K, Zhang Y, Li Y.},
journal = {Methods Mol Biol},
year = {2012},
doi = {10.1007/978-1-61779-483-4_10},
pmid = {22144358}
}
@article{lin7322,
title = {Continuous bio-catalytic conversion of sugar mixture to acetone-butanol-ethanol by immobilized Clostridium acetobutylicum DSM 792.},
author = {Survase SA, van Heiningen A, Granstrom T},
journal = {Appl Microbiol Biotechnol},
year = {2011},
doi = {10.1007/s00253-011-3761-x},
pmid = {22159612}
}
@article{lin99743,
title = {Biobutanol.},
author = {Dong H, Tao W, Dai Z, Yang L, Gong F, Zhang Y, Li Y.},
journal = {Adv Biochem Eng Biotechnol},
year = {2012},
doi = {10.1007/10_2011_128},
pmid = {22167047}
}
@article{lin7321,
title = {An agr quorum sensing system that regulates granulose formation and sporulation in Clostridium acetobutylicum.},
author = {Steiner E, Scott J, Minton NP, Winzer K},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/AEM.06376-11},
pmid = {22179241}
}
@article{lin98967,
title = {Ribulokinase and transcriptional regulation of arabinose metabolism in Clostridium acetobutylicum.},
author = {Zhang L, Leyn SA, Gu Y, Jiang W, Rodionov DA, Yang C.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.06241-11},
pmid = {22194461}
}
@article{lin7320,
title = {Metabolic engineering of Clostridium acetobutylicum ATCC 824 for isopropanol-butanol-ethanol fermentation.},
author = {Lee J, Jang YS, Choi SJ, Im JA, Song H, Cho JH, Seung do Y, Papoutsakis ET, Bennett GN, Lee SY},
journal = {Appl Environ Microbiol},
year = {2011},
doi = {10.1128/AEM.06382-11},
pmid = {22210214}
}
@article{lin7319,
title = {Reaction engineering studies of acetone-butanol-ethanol fermentation with Clostridium acetobutylicum.},
author = {Schmidt M, Weuster-Botz D},
journal = {Biotechnol J},
year = {2012},
doi = {10.1002/biot.201100418},
pmid = {22213682}
}
@article{lin99290,
title = {Identification of surprisingly diverse type IV pili, across a broad range of gram-positive bacteria.},
author = {Imam S, Chen Z, Roos DS, Pohlschroder M.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0028919},
pmid = {22216142}
}
@article{lin98827,
title = {Cryptic polyketide synthase genes in non-pathogenic Clostridium SPP.},
author = {Behnken S, Hertweck C.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0029609},
pmid = {22235310}
}
@article{lin99809,
title = {High yield bio-butanol production by solvent-producing bacterial microflora.},
author = {Cheng CL, Che PY, Chen BY, Lee WJ, Chien LJ, Chang JS.},
journal = {Bioresour Technol},
year = {2012},
doi = {10.1016/j.biortech.2011.12.133},
pmid = {22244959}
}
@article{lin7318,
title = {Modifying the product pattern of Clostridium acetobutylicum: physiological effects of disrupting the acetate and acetone formation pathways.},
author = {Lehmann D, Honicke D, Ehrenreich A, Schmidt M, Weuster-Botz D, Bahl H, Lutke-Eversloh T},
journal = {Appl Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s00253-011-3852-8},
pmid = {22246530}
}
@article{lin98836,
title = {Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates.},
author = {Kampmann K, Ratering S, Kramer I, Schmidt M, Zerr W, Schnell S.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.06394-11},
pmid = {22247168}
}
@article{lin98995,
title = {Disruption of the acetate kinase (ack) gene of Clostridium acetobutylicum results in delayed acetate production.},
author = {Kuit W, Minton NP, Lopez-Contreras AM, Eggink G.},
journal = {Appl Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s00253-011-3848-4},
pmid = {22249720}
}
@article{lin98996,
title = {Integration of DNA into bacterial chromosomes from plasmids without a counter-selection marker.},
author = {Heap JT, Ehsaan M, Cooksley CM, Ng YK, Cartman ST, Winzer K, Minton NP.},
journal = {Nucleic Acids Res},
year = {2012},
doi = {10.1093/nar/gkr1321},
pmid = {22259038}
}
@article{lin7317,
title = {Acetone-butanol fermentation of marine macroalgae.},
author = {Huesemann MH, Kuo LJ, Urquhart L, Gill GA, Roesijadi G},
journal = {Bioresour Technol},
year = {2012},
doi = {10.1016/j.biortech.2011.12.148},
pmid = {22277213}
}
@article{lin99700,
title = {Global transcriptional changes of Clostridium acetobutylicum cultures with increased butanol:acetone ratios.},
author = {Honicke D, Janssen H, Grimmler C, Ehrenreich A, Lutke-Eversloh T.},
journal = {N Biotechnol},
year = {2012},
doi = {10.1016/j.nbt.2012.01.001},
pmid = {22285530}
}
@article{lin99703,
title = {Use of the composite membrane of poly(ether-block-amide) and carbon nanotubes (CNTs) in a pervaporation system incorporated with fermentation for butanol production by Clostridium acetobutylicum.},
author = {Yen HW, Chen ZH, Yang IK.},
journal = {Bioresour Technol},
year = {2012},
doi = {10.1016/j.biortech.2012.01.017},
pmid = {22290021}
}
@article{lin99187,
title = {In vitro assembly of multiple DNA fragments using successive hybridization.},
author = {Jiang X, Yang J, Zhang H, Zou H, Wang C, Xian M.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0030267},
pmid = {22291927}
}
@article{lin7316,
title = {Continuous lactose fermentation by Clostridium acetobutylicum--assessment of energetics and product yields of the acidogenesis.},
author = {Napoli F, Olivieri G, Russo ME, Marzocchella A, Salatino P},
journal = {Enzyme Microb Technol},
year = {2011},
doi = {10.1016/j.enzmictec.2011.11.003},
pmid = {22305171}
}
@article{lin99818,
title = {Biorefinery of sweet sorghum stem.},
author = {Yu J, Zhang T, Zhong J, Zhang X, Tan T.},
journal = {Biotechnol Adv},
year = {2012},
doi = {10.1016/j.biotechadv.2012.01.014},
pmid = {22306167}
}
@article{lin7315,
title = {Novel and neglected issues of acetone-butanol-ethanol (ABE) fermentation by clostridia: Clostridium metabolic diversity, tools for process mapping and continuous fermentation systems.},
author = {Patakova P, Linhova M, Rychtera M, Paulova L, Melzoch K},
journal = {Biotechnol Adv},
year = {2012},
doi = {10.1016/j.biotechadv.2012.01.010},
pmid = {22306328}
}
@article{lin99746,
title = {Characterization of photochemical processes for H2 production by CdS nanorod-[FeFe] hydrogenase complexes.},
author = {Brown KA, Wilker MB, Boehm M, Dukovic G, King PW.},
journal = {J Am Chem Soc},
year = {2012},
doi = {10.1021/ja2116348},
pmid = {22352762}
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@article{lin99814,
title = {Butanol production from cane molasses by Clostridium saccharobutylicum DSM 13864: batch and semicontinuous fermentation.},
author = {Ni Y, Wang Y, Sun Z.},
journal = {Appl Biochem Biotechnol},
year = {2012},
doi = {10.1007/s12010-012-9614-y},
pmid = {22362519}
}
@article{lin7314,
title = {Shotgun proteomic monitoring of Clostridium acetobutylicum during stationary phase of butanol fermentation using xylose and comparison with the exponential phase.},
author = {Sivagnanam K, Raghavan VG, Shah M, Hettich RL, Verberkmoes NC, Lefsrud MG},
journal = {J Ind Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s10295-012-1094-0},
pmid = {22395897}
}
@article{lin7313,
title = {Integrated bioprocess for long-term continuous cultivation of Clostridium acetobutylicum coupled to pervaporation with PDMS composite membranes.},
author = {Van Hecke W, Vandezande P, Claes S, Vangeel S, Beckers H, Diels L, De Wever H},
journal = {Bioresour Technol},
year = {2012},
doi = {10.1016/j.biortech.2012.02.043},
pmid = {22406098}
}
@article{lin99682,
title = {Acetone-butanol-ethanol (ABE) fermentation using Clostridium acetobutylicum XY16 and in situ recovery by PDMS/ceramic composite membrane.},
author = {Wu H, Chen XP, Liu GP, Jiang M, Guo T, Jin WQ, Wei P, Zhu DW.},
journal = {Bioprocess Biosyst Eng},
year = {2012},
doi = {10.1007/s00449-012-0721-5},
pmid = {22410754}
}
@article{lin368969,
title = {Genomic sequence of bacteriophage ATCC 8074-B1 and activity of its endolysin and engineered variants against Clostridium sporogenes.},
author = {Mayer MJ, Gasson MJ, Narbad A.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.07884-11},
pmid = {22427494}
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@article{lin368948,
title = {Quantitative fluorescence in situ hybridization analysis of microbial consortia from a biogenic gas field in Alaska's Cook Inlet basin.},
author = {Dawson KS, Strapoc D, Huizinga B, Lidstrom U, Ashby M, Macalady JL.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.07122-11},
pmid = {22427501}
}
@article{lin99287,
title = {Genome-wide dynamic transcriptional profiling in Clostridium beijerinckii NCIMB 8052 using single-nucleotide resolution RNA-Seq.},
author = {Wang Y, Li X, Mao Y, Blaschek HP.},
journal = {BMC Genomics},
year = {2012},
doi = {10.1186/1471-2164-13-102},
pmid = {22433311}
}
@article{lin99318,
title = {Single-cell sequencing provides clues about the host interactions of segmented filamentous bacteria (SFB).},
author = {Pamp SJ, Harrington ED, Quake SR, Relman DA, Blainey PC.},
journal = {Genome Res},
year = {2012},
doi = {10.1101/gr.131482.111},
pmid = {22434425}
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@article{lin7312,
title = {Resonance assignments of cohesin and dockerin domains from Clostridium acetobutylicum ATCC824.},
author = {Cui Z, Li Y, Xiao Y, Feng Y, Cui Q},
journal = {Biomol NMR Assign},
year = {2012},
doi = {10.1007/s12104-012-9381-2},
pmid = {22446850}
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@article{lin99830,
title = {Enhancement of photoheterotrophic biohydrogen production at elevated temperatures by the expression of a thermophilic clostridial hydrogenase.},
author = {Lo SC, Shih SH, Chang JJ, Wang CY, Huang CC.},
journal = {Appl Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s00253-012-4017-0},
pmid = {22460592}
}
@article{lin99688,
title = {Production of biofuels from pretreated microalgae biomass by anaerobic fermentation with immobilized Clostridium acetobutylicum cells.},
author = {Efremenko EN, Nikolskaya AB, Lyagin IV, Senko OV, Makhlis TA, Stepanov NA, Maslova OV, Mamedova F, Varfolomeev SD.},
journal = {Bioresour Technol},
year = {2012},
doi = {10.1016/j.biortech.2012.03.049},
pmid = {22483558}
}
@article{lin99694,
title = {A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum--cellular behavior in adaptation to n-butanol.},
author = {Schwarz KM, Kuit W, Grimmler C, Ehrenreich A, Kengen SW.},
journal = {J Biotechnol},
year = {2012},
doi = {10.1016/j.jbiotec.2012.03.018},
pmid = {22484128}
}
@article{lin99047,
title = {Riboswitch (T-box)-mediated control of tRNA-dependent amidation in Clostridium acetobutylicum rationalizes gene and pathway redundancy for asparagine and asparaginyl-trnaasn synthesis.},
author = {Saad NY, Schiel B, Braye M, Heap JT, Minton NP, Durre P, Becker HD.},
journal = {J Biol Chem},
year = {2012},
doi = {10.1074/jbc.m111.332304},
pmid = {22505715}
}
@article{lin99689,
title = {A transcriptional study of acidogenic chemostat cells of Clostridium acetobutylicum--solvent stress caused by a transient n-butanol pulse.},
author = {Janssen H, Grimmler C, Ehrenreich A, Bahl H, Fischer RJ.},
journal = {J Biotechnol},
year = {2012},
doi = {10.1016/j.jbiotec.2012.03.027},
pmid = {22537853}
}
@article{lin99696,
title = {Effect of iron limitation and fur gene inactivation on the transcriptional profile of the strict anaerobe Clostridium acetobutylicum.},
author = {Vasileva D, Janssen H, Honicke D, Ehrenreich A, Bahl H.},
journal = {Microbiology (Reading)},
year = {2012},
doi = {10.1099/mic.0.056978-0},
pmid = {22556358}
}
@article{lin99789,
title = {Inhibition of biocatalysis in [Fe-Fe] hydrogenase by oxygen: molecular dynamics and density functional theory calculations.},
author = {Hong G, Pachter R.},
journal = {ACS Chem Biol},
year = {2012},
doi = {10.1021/cb3001149},
pmid = {22563793}
}
@article{lin99686,
title = {New insights into the butyric acid metabolism of Clostridium acetobutylicum.},
author = {Lehmann D, Radomski N, Lutke-Eversloh T.},
journal = {Appl Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s00253-012-4109-x},
pmid = {22576943}
}
@article{lin7311,
title = {The redox-sensing protein Rex, a transcriptional regulator of solventogenesis in Clostridium acetobutylicum.},
author = {Wietzke M, Bahl H},
journal = {Appl Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s00253-012-4112-2},
pmid = {22576944}
}
@article{lin7310,
title = {Genome-scale modeling using flux ratio constraints to enable metabolic engineering of clostridial metabolism in silico.},
author = {McAnulty MJ, Yen JY, Freedman BG, Senger RS},
journal = {BMC Syst Biol},
year = {2012},
doi = {10.1186/1752-0509-6-42},
pmid = {22583864}
}
@article{lin99088,
title = {NIBBS-search for fast and accurate prediction of phenotype-biased metabolic systems.},
author = {Schmidt MC, Rocha AM, Padmanabhan K, Shpanskaya Y, Banfield J, Scott K, Mihelcic JR, Samatova NF.},
journal = {PLoS Comput Biol},
year = {2012},
doi = {10.1371/journal.pcbi.1002490},
pmid = {22589706}
}
@article{lin99676,
title = {Engineering cellulase activity into Clostridium acetobutylicum.},
author = {Fierobe HP, Mingardon F, Chanal A.},
journal = {Methods Enzymol},
year = {2012},
doi = {10.1016/b978-0-12-415931-0.00016-1},
pmid = {22608733}
}
@article{lin99675,
title = {Over-expression of stress protein-encoding genes helps Clostridium acetobutylicum to rapidly adapt to butanol stress.},
author = {Mann MS, Dragovic Z, Schirrmacher G, Lutke-Eversloh T.},
journal = {Biotechnol Lett},
year = {2012},
doi = {10.1007/s10529-012-0951-2},
pmid = {22618238}
}
@article{lin7309,
title = {Phosphoproteomic investigation of a solvent producing bacterium Clostridium acetobutylicum.},
author = {Bai X, Ji Z},
journal = {Appl Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s00253-012-4156-3},
pmid = {22627760}
}
@article{lin99680,
title = {High-titer n-butanol production by clostridium acetobutylicum JB200 in fed-batch fermentation with intermittent gas stripping.},
author = {Xue C, Zhao J, Lu C, Yang ST, Bai F, Tang IC.},
journal = {Biotechnol Bioeng},
year = {2012},
doi = {10.1002/bit.24563},
pmid = {22627864}
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@article{lin99714,
title = {Genetic modifications and introduction of heterologous pdc genes in Enterococcus faecalis for its use in production of bioethanol.},
author = {Rana NF, Gente S, Rince A, Auffray Y, Laplace JM.},
journal = {Biotechnol Lett},
year = {2012},
doi = {10.1007/s10529-012-0964-x},
pmid = {22628022}
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@article{lin99264,
title = {The genomic basis for the evolution of a novel form of cellular reproduction in the bacterium Epulopiscium.},
author = {Miller DA, Suen G, Clements KD, Angert ER.},
journal = {BMC Genomics},
year = {2012},
doi = {10.1186/1471-2164-13-265},
pmid = {22721417}
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@article{lin98971,
title = {Introducing a single secondary alcohol dehydrogenase into butanol-tolerant Clostridium acetobutylicum Rh8 switches ABE fermentation to high level IBE fermentation.},
author = {Dai Z, Dong H, Zhu Y, Zhang Y, Li Y, Ma Y.},
journal = {Biotechnol Biofuels},
year = {2012},
doi = {10.1186/1754-6834-5-44},
pmid = {22742819}
}
@article{lin98981,
title = {Identification and characterization of two functionally unknown genes involved in butanol tolerance of Clostridium acetobutylicum.},
author = {Jia K, Zhang Y, Li Y.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0038815},
pmid = {22768047}
}
@article{lin7307,
title = {Engineering a homobutanol fermentation pathway in Escherichia coli EG03.},
author = {Garza E, Zhao J, Wang Y, Wang J, Iverson A, Manow R, Finan C, Zhou S},
journal = {J Ind Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s10295-012-1151-8},
pmid = {22776992}
}
@article{lin7306,
title = {[Cloning and expression of key genes of butanol synthetic pathway in Escherichia coli].},
author = {Zhang Y, Zhou P, Wang P, Xie J, Ye Q},
journal = {Wei Sheng Wu Xue Bao},
year = {2012},
pmid = {22803344}
}
@article{lin99673,
title = {Enhancement of butanol production and reducing power using a two-stage controlled-pH strategy in batch culture of Clostridium acetobutylicum XY16.},
author = {Guo T, Sun B, Jiang M, Wu H, Du T, Tang Y, Wei P, Ouyang P.},
journal = {World J Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s11274-012-1063-9},
pmid = {22806161}
}
@article{lin99735,
title = {Screening and characteristics of a butanol-tolerant strain and butanol production from enzymatic hydrolysate of NaOH-pretreated corn stover.},
author = {Gao K, Li Y, Tian S, Yang X.},
journal = {World J Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s11274-012-1107-1},
pmid = {22806737}
}
@article{lin99721,
title = {A selection platform for carbon chain elongation using the CoA-dependent pathway to produce linear higher alcohols.},
author = {Machado HB, Dekishima Y, Luo H, Lan EI, Liao JC.},
journal = {Metab Eng},
year = {2012},
doi = {10.1016/j.ymben.2012.07.002},
pmid = {22819734}
}
@article{lin7305,
title = {Analysis of redox responses during TNT transformation by Clostridium acetobutylicum ATCC 824 and mutants exhibiting altered metabolism.},
author = {Cai X, Servinsky M, Kiel J, Sund C, Bennett GN},
journal = {Appl Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s00253-012-4253-3},
pmid = {22843424}
}
@article{lin99010,
title = {Pleiotropic functions of catabolite control protein CcpA in Butanol-producing Clostridium acetobutylicum.},
author = {Ren C, Gu Y, Wu Y, Zhang W, Yang C, Yang S, Jiang W.},
journal = {BMC Genomics},
year = {2012},
doi = {10.1186/1471-2164-13-349},
pmid = {22846451}
}
@article{lin99719,
title = {Controlling autonomous underwater floating platforms using bacterial fermentation.},
author = {Biffinger JC, Fitzgerald LA, Howard EC, Petersen ER, Fulmer PA, Wu PK, Ringeisen BR.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-012-4296-5},
pmid = {22851013}
}
@article{lin98958,
title = {Phosphoketolase pathway for xylose catabolism in Clostridium acetobutylicum revealed by 13C metabolic flux analysis.},
author = {Liu L, Zhang L, Tang W, Gu Y, Hua Q, Yang S, Jiang W, Yang C.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.00713-12},
pmid = {22865845}
}
@article{lin99715,
title = {Covalent attachment of FeFe hydrogenases to carbon electrodes for direct electron transfer.},
author = {Baffert C, Sybirna K, Ezanno P, Lautier T, Hajj V, Meynial-Salles I, Soucaille P, Bottin H, Leger C.},
journal = {Anal Chem},
year = {2012},
doi = {10.1021/ac301812s},
pmid = {22891965}
}
@article{lin99845,
title = {A role for His-160 in peroxide inhibition of S. cerevisiae S-formylglutathione hydrolase: evidence for an oxidation sensitive motif.},
author = {Legler PM, Leary DH, Hervey WJ, Millard CB.},
journal = {Arch Biochem Biophys},
year = {2012},
doi = {10.1016/j.abb.2012.08.001},
pmid = {22906720}
}
@article{lin99708,
title = {A modified pathway for the production of acetone in Escherichia coli.},
author = {May A, Fischer RJ, Maria Thum S, Schaffer S, Verseck S, Durre P, Bahl H.},
journal = {Metab Eng},
year = {2013},
doi = {10.1016/j.ymben.2012.08.001},
pmid = {22906955}
}
@article{lin7304,
title = {Simultaneous production of isopropanol, butanol, ethanol and 2,3-butanediol by Clostridium acetobutylicum ATCC 824 engineered strains.},
author = {Collas F, Kuit W, Clement B, Marchal R, Lopez-Contreras AM, Monot F},
journal = {AMB Express},
year = {2012},
doi = {10.1186/2191-0855-2-45},
pmid = {22909015}
}
@article{lin7303,
title = {Arabinose is metabolized via a phosphoketolase pathway in Clostridium acetobutylicum ATCC 824.},
author = {Servinsky MD, Germane KL, Liu S, Kiel JT, Clark AM, Shankar J, Sund CJ},
journal = {J Ind Microbiol Biotechnol},
year = {2012},
doi = {10.1007/s10295-012-1186-x},
pmid = {22922942}
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@article{lin99783,
title = {Two-stage in situ gas stripping for enhanced butanol fermentation and energy-saving product recovery.},
author = {Xue C, Zhao J, Liu F, Lu C, Yang ST, Bai FW.},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2012.07.062},
pmid = {22939598}
}
@article{lin99790,
title = {Screened butanol-tolerant Enterococcus faecium capable of butanol production.},
author = {Ting CN, Wu J, Takahashi K, Endo A, Zhao H.},
journal = {Appl Biochem Biotechnol},
year = {2012},
doi = {10.1007/s12010-012-9888-0},
pmid = {22961352}
}
@article{lin368952,
title = {Draft genome sequence of butanol-acetone-producing Clostridium beijerinckii strain G117.},
author = {Wu YR, Li Y, Yang KL, He J.},
journal = {J Bacteriol},
year = {2012},
doi = {10.1128/jb.01139-12},
pmid = {22965093}
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@article{lin99148,
title = {Oxygen and hydrogen peroxide in the early evolution of life on earth: in silico comparative analysis of biochemical pathways.},
author = {Slesak I, Slesak H, Kruk J.},
journal = {Astrobiology},
year = {2012},
doi = {10.1089/ast.2011.0704},
pmid = {22970865}
}
@article{lin7302,
title = {Targeted mutagenesis of the Clostridium acetobutylicum acetone-butanol-ethanol fermentation pathway.},
author = {Cooksley CM, Zhang Y, Wang H, Redl S, Winzer K, Minton NP},
journal = {Metab Eng},
year = {2012},
doi = {10.1016/j.ymben.2012.09.001},
pmid = {22982601}
}
@article{lin99031,
title = {Novel system for efficient isolation of Clostridium double-crossover allelic exchange mutants enabling markerless chromosomal gene deletions and DNA integration.},
author = {Al-Hinai MA, Fast AG, Papoutsakis ET.},
journal = {Appl Environ Microbiol},
year = {2012},
doi = {10.1128/aem.02214-12},
pmid = {22983967}
}
@article{lin7301,
title = {Yeast extract promotes phase shift of bio-butanol fermentation by Clostridium acetobutylicum ATCC824 using cassava as substrate.},
author = {Li X, Li Z, Zheng J, Shi Z, Li L},
journal = {Bioresour Technol},
year = {2012},
doi = {10.1016/j.biortech.2012.08.056},
pmid = {23023236}
}
@article{lin99257,
title = {Inference of self-regulated transcriptional networks by comparative genomics.},
author = {Cornish JP, Matthews F, Thomas JR, Erill I.},
journal = {Evol Bioinform Online},
year = {2012},
doi = {10.4137/ebo.s9205},
pmid = {23032607}
}
@article{lin99711,
title = {Iron-sulfur cluster coordination in the [FeFe]-hydrogenase H cluster biosynthetic factor HydF.},
author = {Joshi N, Shepard EM, Byer AS, Swanson KD, Broderick JB, Peters JW.},
journal = {FEBS Lett},
year = {2012},
doi = {10.1016/j.febslet.2012.09.028},
pmid = {23041346}
}
@article{lin99665,
title = {Structures of trans-2-enoyl-CoA reductases from Clostridium acetobutylicum and Treponema denticola: insights into the substrate specificity and the catalytic mechanism.},
author = {Hu K, Zhao M, Zhang T, Zha M, Zhong C, Jiang Y, Ding J.},
journal = {Biochem J},
year = {2013},
doi = {10.1042/bj20120871},
pmid = {23050861}
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@article{lin7300,
title = {Characterization of a butanol-acetone-producing Clostridium strain and identification of its solventogenic genes.},
author = {Chua TK, Liang DW, Qi C, Yang KL, He J},
journal = {Bioresour Technol},
year = {2012},
doi = {10.1016/j.biortech.2012.08.085},
pmid = {23069614}
}
@article{lin99108,
title = {Controlled biosynthesis of odd-chain fuels and chemicals via engineered modular metabolic pathways.},
author = {Tseng HC, Prather KL.},
journal = {Proc Natl Acad Sci U S A},
year = {2012},
doi = {10.1073/pnas.1209002109},
pmid = {23071297}
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@article{lin7299,
title = {Improved efficiency of butanol production by absorbed lignocellulose fermentation.},
author = {He Q, Chen H},
journal = {J Biosci Bioeng},
year = {2012},
doi = {10.1016/j.jbiosc.2012.09.017},
pmid = {23085417}
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@article{lin99193,
title = {Evolutionary analyses of non-genealogical bonds produced by introgressive descent.},
author = {Bapteste E, Lopez P, Bouchard F, Baquero F, McInerney JO, Burian RM.},
journal = {Proc Natl Acad Sci U S A},
year = {2012},
doi = {10.1073/pnas.1206541109},
pmid = {23090996}
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@article{lin98929,
title = {Enhanced butanol production obtained by reinforcing the direct butanol-forming route in Clostridium acetobutylicum.},
author = {Jang YS, Lee JY, Lee J, Park JH, Im JA, Eom MH, Lee J, Lee SH, Song H, Cho JH, Seung do Y, Lee SY.},
journal = {mBio},
year = {2012},
doi = {10.1128/mbio.00314-12},
pmid = {23093384}
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@article{lin7298,
title = {Thiolase engineering for enhanced butanol production in Clostridium acetobutylicum.},
author = {Mann MS, Lutke-Eversloh T},
journal = {Biotechnol Bioeng},
year = {2012},
doi = {10.1002/bit.24758},
pmid = {23096577}
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@article{lin99201,
title = {Pyruvate catabolism and hydrogen synthesis pathway genes of Clostridium thermocellum ATCC 27405.},
author = {Carere CR, Kalia V, Sparling R, Cicek N, Levin DB.},
journal = {Indian J Microbiol},
year = {2008},
doi = {10.1007/s12088-008-0036-z},
pmid = {23100718}
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@article{lin368960,
title = {Use of proteomic analysis to elucidate the role of calcium in acetone-butanol-ethanol fermentation by Clostridium beijerinckii NCIMB 8052.},
author = {Han B, Ujor V, Lai LB, Gopalan V, Ezeji TC.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.02969-12},
pmid = {23104411}
}
@article{lin99123,
title = {Gene conservation among endospore-forming bacteria reveals additional sporulation genes in Bacillus subtilis.},
author = {Traag BA, Pugliese A, Eisen JA, Losick R.},
journal = {J Bacteriol},
year = {2013},
doi = {10.1128/jb.01778-12},
pmid = {23123912}
}
@article{lin99786,
title = {Proliferation of diversified clostridial species during biological soil disinfestation incorporated with plant biomass under various conditions.},
author = {Mowlick S, Takehara T, Kaku N, Ueki K, Ueki A.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-012-4532-z},
pmid = {23132344}
}
@article{lin99712,
title = {Integration of chemical catalysis with extractive fermentation to produce fuels.},
author = {Anbarasan P, Baer ZC, Sreekumar S, Gross E, Binder JB, Blanch HW, Clark DS, Toste FD.},
journal = {Nature},
year = {2012},
doi = {10.1038/nature11594},
pmid = {23135469}
}
@article{lin99106,
title = {Volatility in mRNA secondary structure as a design principle for antisense.},
author = {Johnson E, Srivastava R, Srivastava R.},
journal = {Nucleic Acids Res},
year = {2013},
doi = {10.1093/nar/gks902},
pmid = {23161691}
}
@article{lin99699,
title = {Acetone-butanol-ethanol fermentation in a continuous and closed-circulating fermentation system with PDMS membrane bioreactor.},
author = {Chen C, Xiao Z, Tang X, Cui H, Zhang J, Li W, Ying C.},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2012.10.077},
pmid = {23196246}
}
@article{lin99796,
title = {Production of acetone, butanol, and ethanol from biomass of the green seaweed Ulva lactuca.},
author = {van der Wal H, Sperber BL, Houweling-Tan B, Bakker RR, Brandenburg W, Lopez-Contreras AM.},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2012.10.094},
pmid = {23201525}
}
@article{lin100015,
title = {pH-induced gene regulation of solvent production by Clostridium acetobutylicum in continuous culture: parameter estimation and sporulation modelling.},
author = {Thorn GJ, King JR, Jabbari S.},
journal = {Math Biosci},
year = {2013},
doi = {10.1016/j.mbs.2012.11.004},
pmid = {23201580}
}
@article{lin99683,
title = {The enhancement of butanol production by in situ butanol removal using biodiesel extraction in the fermentation of ABE (acetone-butanol-ethanol).},
author = {Yen HW, Wang YC.},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2012.11.039},
pmid = {23219689}
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@article{lin98936,
title = {Improving butanol fermentation to enter the advanced biofuel market.},
author = {Tracy BP.},
journal = {mBio},
year = {2012},
doi = {10.1128/mbio.00518-12},
pmid = {23232720}
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@article{lin99230,
title = {Ethanolamine utilization in Vibrio alginolyticus.},
author = {Khatri N, Khatri I, Subramanian S, Raychaudhuri S.},
journal = {Biol Direct},
year = {2012},
doi = {10.1186/1745-6150-7-45},
pmid = {23234435}
}
@article{lin99134,
title = {The purine-utilizing bacterium Clostridium acidurici 9a: a genome-guided metabolic reconsideration.},
author = {Hartwich K, Poehlein A, Daniel R.},
journal = {PLoS One},
year = {2012},
doi = {10.1371/journal.pone.0051662},
pmid = {23240052}
}
@article{lin99121,
title = {Pyruvate:ferredoxin oxidoreductase is coupled to light-independent hydrogen production in Chlamydomonas reinhardtii.},
author = {Noth J, Krawietz D, Hemschemeier A, Happe T.},
journal = {J Biol Chem},
year = {2013},
doi = {10.1074/jbc.m112.429985},
pmid = {23258532}
}
@article{lin98959,
title = {Pervaporative recovery of ABE during continuous cultivation: enhancement of performance.},
author = {Van Hecke W, Hofmann T, De Wever H.},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2012.11.072},
pmid = {23262020}
}
@article{lin99647,
title = {Enhancement of butanol tolerance and butanol yield in Clostridium acetobutylicum mutant NT642 obtained by nitrogen ion beam implantation.},
author = {Liu XB, Gu QY, Yu XB, Luo W.},
journal = {J Microbiol},
year = {2012},
doi = {10.1007/s12275-012-2289-9},
pmid = {23274990}
}
@article{lin7297,
title = {Effects of nutritional enrichment on the production of acetone-butanol-ethanol (ABE) by Clostridium acetobutylicum.},
author = {Choi SJ, Lee J, Jang YS, Park JH, Lee SY, Kim IH},
journal = {J Microbiol},
year = {2012},
doi = {10.1007/s12275-012-2373-1},
pmid = {23274997}
}
@article{lin99001,
title = {A comparison of three pH control methods for revealing effects of undissociated butyric acid on specific butanol production rate in batch fermentation of Clostridium acetobutylicum.},
author = {Yang X, Tu M, Xie R, Adhikari S, Tong Z.},
journal = {AMB Express},
year = {2013},
doi = {10.1186/2191-0855-3-3},
pmid = {23294525}
}
@article{lin99661,
title = {Recent advancements in various steps of ethanol, butanol, and isobutanol productions from woody materials.},
author = {Fatehi P.},
journal = {Biotechnol Prog},
year = {2013},
doi = {10.1002/btpr.1688},
pmid = {23297056}
}
@article{lin99025,
title = {Integrative modelling of pH-dependent enzyme activity and transcriptomic regulation of the acetone-butanol-ethanol fermentation of Clostridium acetobutylicum in continuous culture.},
author = {Millat T, Janssen H, Bahl H, Fischer RJ, Wolkenhauer O.},
journal = {Microb Biotechnol},
year = {2013},
doi = {10.1111/1751-7915.12033},
pmid = {23332010}
}
@article{lin99653,
title = {Repetitive domestication to enhance butanol tolerance and production in Clostridium acetobutylicum through artificial simulation of bio-evolution.},
author = {Liu XB, Gu QY, Yu XB.},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2012.12.121},
pmid = {23334021}
}
@article{lin99650,
title = {Acetone-butanol-ethanol production with high productivity using Clostridium acetobutylicum BKM19.},
author = {Jang YS, Malaviya A, Lee SY.},
journal = {Biotechnol Bioeng},
year = {2013},
doi = {10.1002/bit.24843},
pmid = {23335317}
}
@article{lin99698,
title = {Steady-state catalytic wave-shapes for 2-electron reversible electrocatalysts and enzymes.},
author = {Fourmond V, Baffert C, Sybirna K, Lautier T, Abou Hamdan A, Dementin S, Soucaille P, Meynial-Salles I, Bottin H, Leger C.},
journal = {J Am Chem Soc},
year = {2013},
doi = {10.1021/ja311607s},
pmid = {23362993}
}
@article{lin99684,
title = {Resolving cell composition through simple measurements, genome-scale modeling, and a genetic algorithm.},
author = {Senger RS, Nazem-Bokaee H.},
journal = {Methods Mol Biol},
year = {2013},
doi = {10.1007/978-1-62703-299-5_5},
pmid = {23417800}
}
@article{lin99677,
title = {Engineering of NADPH regenerators in Escherichia coli for enhanced biotransformation.},
author = {Lee WH, Kim MD, Jin YS, Seo JH.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-013-4750-z},
pmid = {23420268}
}
@article{lin99641,
title = {Effect of zinc supplementation on acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.},
author = {Wu YD, Xue C, Chen LJ, Bai FW.},
journal = {J Biotechnol},
year = {2013},
doi = {10.1016/j.jbiotec.2013.02.009},
pmid = {23458964}
}
@article{lin99763,
title = {Deriving metabolic engineering strategies from genome-scale modeling with flux ratio constraints.},
author = {Yen JY, Nazem-Bokaee H, Freedman BG, Athamneh AI, Senger RS.},
journal = {Biotechnol J},
year = {2013},
doi = {10.1002/biot.201200234},
pmid = {23460591}
}
@article{lin368953,
title = {Genome Sequence of the Butanol Hyperproducer Clostridium saccharoperbutylacetonicum N1-4.},
author = {Del Cerro C, Felpeto-Santero C, Rojas A, Tortajada M, Ramon D, Garcia JL.},
journal = {Genome Announc},
year = {2013},
doi = {10.1128/genomea.00070-13},
pmid = {23516201}
}
@article{lin7296,
title = {Workflow for quantitative proteomic analysis of Clostridium acetobutylicum ATCC 824 using iTRAQ tags.},
author = {Hou S, Jones SW, Choe LH, Papoutsakis ET, Lee KH},
journal = {Methods},
year = {2013},
doi = {10.1016/j.ymeth.2013.03.013},
pmid = {23523702}
}
@article{lin7295,
title = {New options to engineer biofuel microbes: development and application of a high-throughput screening system.},
author = {Scheel M, Lutke-Eversloh T},
journal = {Metab Eng},
year = {2013},
doi = {10.1016/j.ymben.2013.03.002},
pmid = {23524105}
}
@article{lin99660,
title = {The putative influence of the agr operon upon survival mechanisms used by Clostridium acetobutylicum.},
author = {Jabbari S, Steiner E, Heap JT, Winzer K, Minton NP, King JR.},
journal = {Math Biosci},
year = {2013},
doi = {10.1016/j.mbs.2013.03.005},
pmid = {23538287}
}
@article{lin7294,
title = {Metabolic engineering of Clostridium acetobutylicum ATCC 824 for the high-yield production of a biofuel composed of an isopropanol/butanol/ethanol mixture.},
author = {Dusseaux S, Croux C, Soucaille P, Meynial-Salles I},
journal = {Metab Eng},
year = {2013},
doi = {10.1016/j.ymben.2013.03.003},
pmid = {23541907}
}
@article{lin98941,
title = {An ethanolamine-phosphate modified glycolipid in Clostridium acetobutylicum that responds to membrane stress.},
author = {Tian B, Guan Z, Goldfine H.},
journal = {Biochim Biophys Acta},
year = {2013},
doi = {10.1016/j.bbalip.2013.03.005},
pmid = {23542061}
}
@article{lin99238,
title = {The role of tetraether lipid composition in the adaptation of thermophilic archaea to acidity.},
author = {Boyd ES, Hamilton TL, Wang J, He L, Zhang CL.},
journal = {Front Microbiol},
year = {2013},
doi = {10.3389/fmicb.2013.00062},
pmid = {23565112}
}
@article{lin99669,
title = {Butyrate production in engineered Escherichia coli with synthetic scaffolds.},
author = {Baek JM, Mazumdar S, Lee SW, Jung MY, Lim JH, Seo SW, Jung GY, Oh MK.},
journal = {Biotechnol Bioeng},
year = {2013},
doi = {10.1002/bit.24925},
pmid = {23568786}
}
@article{lin98835,
title = {Development of an electrotransformation protocol for genetic manipulation of Clostridium pasteurianum.},
author = {Pyne ME, Moo-Young M, Chung DA, Chou CP.},
journal = {Biotechnol Biofuels},
year = {2013},
doi = {10.1186/1754-6834-6-50},
pmid = {23570573}
}
@article{lin99674,
title = {Light-driven biocatalysis with cytochrome P450 peroxygenases.},
author = {Girhard M, Kunigk E, Tihovsky S, Shumyantseva VV, Urlacher VB.},
journal = {Biotechnol Appl Biochem},
year = {2013},
doi = {10.1002/bab.1063},
pmid = {23586998}
}
@article{lin99642,
title = {Metabolic engineering of Clostridium acetobutylicum for the enhanced production of isopropanol-butanol-ethanol fuel mixture.},
author = {Jang YS, Malaviya A, Lee J, Im JA, Lee SY, Lee J, Eom MH, Cho JH, Seung do Y.},
journal = {Biotechnol Prog},
year = {2013},
doi = {10.1002/btpr.1733},
pmid = {23606675}
}
@article{lin99634,
title = {Role of extracellular cues to trigger the metabolic phase shifting from acidogenesis to solventogenesis in Clostridium acetobutylicum.},
author = {Kumar M, Gayen K, Saini S.},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2013.03.159},
pmid = {23612162}
}
@article{lin7293,
title = {Butanol production by bioconversion of cheese whey in a continuous packed bed reactor.},
author = {Raganati F, Olivieri G, Procentese A, Russo ME, Salatino P, Marzocchella A},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2013.03.180},
pmid = {23619138}
}
@article{lin99645,
title = {Conversion of levulinic acid to 2-butanone by acetoacetate decarboxylase from Clostridium acetobutylicum.},
author = {Min K, Kim S, Yum T, Kim Y, Sang BI, Um Y.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-013-4879-9},
pmid = {23624707}
}
@article{lin99693,
title = {A shift in the dominant phenotype governs the pH-induced metabolic switch of Clostridium acetobutylicumin phosphate-limited continuous cultures.},
author = {Millat T, Janssen H, Thorn GJ, King JR, Bahl H, Fischer RJ, Wolkenhauer O.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-013-4860-7},
pmid = {23640360}
}
@article{lin99637,
title = {Engineering Clostridium acetobutylicum for alcohol production.},
author = {Hou X, Peng W, Xiong L, Huang C, Chen X, Chen X, Zhang W.},
journal = {J Biotechnol},
year = {2013},
doi = {10.1016/j.jbiotec.2013.04.013},
pmid = {23651949}
}
@article{lin7292,
title = {Metabolic engineering of Candida utilis for isopropanol production.},
author = {Tamakawa H, Mita T, Yokoyama A, Ikushima S, Yoshida S},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-013-4964-0},
pmid = {23674152}
}
@article{lin99165,
title = {Genomic and physiological variability within Group II (non-proteolytic) Clostridium botulinum.},
author = {Stringer SC, Carter AT, Webb MD, Wachnicka E, Crossman LC, Sebaihia M, Peck MW.},
journal = {BMC Genomics},
year = {2013},
doi = {10.1186/1471-2164-14-333},
pmid = {23679073}
}
@article{lin98915,
title = {Discovery of a novel gene involved in autolysis of Clostridium cells.},
author = {Yang L, Bao G, Zhu Y, Dong H, Zhang Y, Li Y.},
journal = {Protein Cell},
year = {2013},
doi = {10.1007/s13238-013-3025-x},
pmid = {23702687}
}
@article{lin99733,
title = {Identification of a gene involved in plasmid structural instability in Corynebacterium glutamicum.},
author = {Kitade Y, Okino S, Gunji W, Hiraga K, Suda M, Suzuki N, Inui M, Yukawa H.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-013-4934-6},
pmid = {23703324}
}
@article{lin7290,
title = {The two stage immobilized column reactor with an integrated solvent recovery module for enhanced ABE production.},
author = {Bankar SB, Survase SA, Ojamo H, Granstrom T},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2013.04.046},
pmid = {23708785}
}
@article{lin99765,
title = {Characterization of two novel butanol dehydrogenases involved in butanol degradation in syngas-utilizing bacterium Clostridium ljungdahlii DSM 13528.},
author = {Tan Y, Liu J, Liu Z, Li F.},
journal = {J Basic Microbiol},
year = {2014},
doi = {10.1002/jobm.201300046},
pmid = {23720212}
}
@article{lin99772,
title = {A novel combinatorial biocatalytic approach for producing antibacterial compounds effective against Mycobacterium tuberculosis (TB).},
author = {McClay K, Wan B, Wang Y, Cho S, Yu J, Santarsiero B, Mehboob S, Johnson M, Franzblau S, Steffan R.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-013-5012-9},
pmid = {23749163}
}
@article{lin99623,
title = {Constraint-based genome-scale metabolic modeling of Clostridium acetobutylicum behavior in an immobilized column.},
author = {Wallenius J, Viikila M, Survase S, Ojamo H, Eerikainen T.},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2013.05.085},
pmid = {23771000}
}
@article{lin99740,
title = {Metabolic engineering of Corynebacterium glutamicum for increasing the production of L-ornithine by increasing NADPH availability.},
author = {Jiang LY, Zhang YY, Li Z, Liu JZ.},
journal = {J Ind Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s10295-013-1306-2},
pmid = {23836141}
}
@article{lin7289,
title = {Enhanced butanol production in Clostridium acetobutylicum ATCC 824 by double overexpression of 6-phosphofructokinase and pyruvate kinase genes.},
author = {Ventura JR, Hu H, Jahng D},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-013-5075-7},
pmid = {23838793}
}
@article{lin99098,
title = {Development of a gene knockout system using mobile group II introns (Targetron) and genetic disruption of acid production pathways in Clostridium beijerinckii.},
author = {Wang Y, Li X, Milne CB, Janssen H, Lin W, Phan G, Hu H, Jin YS, Price ND, Blaschek HP.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.00971-13},
pmid = {23872562}
}
@article{lin368976,
title = {Integrated OMICS guided engineering of biofuel butanol-tolerance in photosynthetic Synechocystis sp. PCC 6803.},
author = {Zhu H, Ren X, Wang J, Song Z, Shi M, Qiao J, Tian X, Liu J, Chen L, Zhang W.},
journal = {Biotechnol Biofuels},
year = {2013},
doi = {10.1186/1754-6834-6-106},
pmid = {23883549}
}
@article{lin99285,
title = {Reductive evolution and the loss of PDC/PAS domains from the genus Staphylococcus.},
author = {Shah N, Gaupp R, Moriyama H, Eskridge KM, Moriyama EN, Somerville GA.},
journal = {BMC Genomics},
year = {2013},
doi = {10.1186/1471-2164-14-524},
pmid = {23902280}
}
@article{lin368955,
title = {Complete Genome Sequence of Clostridium sp. Strain DL-VIII, a Novel Solventogenic Clostridium Species Isolated from Anaerobic Sludge.},
author = {Taghavi S, Izquierdo JA, van der Lelie D.},
journal = {Genome Announc},
year = {2013},
doi = {10.1128/genomea.00605-13},
pmid = {23929491}
}
@article{lin368983,
title = {Expression and delivery of an endolysin to combat Clostridium perfringens.},
author = {Gervasi T, Horn N, Wegmann U, Dugo G, Narbad A, Mayer MJ.},
journal = {Appl Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s00253-013-5128-y},
pmid = {23942878}
}
@article{lin99619,
title = {Improvement of solvent production from xylose mother liquor by engineering the xylose metabolic pathway in Clostridium acetobutylicum EA 2018.},
author = {Li Z, Xiao H, Jiang W, Jiang Y, Yang S.},
journal = {Appl Biochem Biotechnol},
year = {2013},
doi = {10.1007/s12010-013-0414-9},
pmid = {23949683}
}
@article{lin99114,
title = {Valorization of date palm (Phoenix dactylifera) fruit processing by-products and wastes using bioprocess technology - Review.},
author = {Chandrasekaran M, Bahkali AH.},
journal = {Saudi J Biol Sci},
year = {2013},
doi = {10.1016/j.sjbs.2012.12.004},
pmid = {23961227}
}
@article{lin7287,
title = {Secretion and assembly of functional mini-cellulosomes from synthetic chromosomal operons in Clostridium acetobutylicum ATCC 824.},
author = {Kovacs K, Willson BJ, Schwarz K, Heap JT, Jackson A, Bolam DN, Winzer K, Minton NP},
journal = {Biotechnol Biofuels},
year = {2013},
doi = {10.1186/1754-6834-6-117},
pmid = {23962085}
}
@article{lin99135,
title = {Improved efficiency of butanol production by absorbent fermentation with a renewable carrier.},
author = {He Q, Chen H.},
journal = {Biotechnol Biofuels},
year = {2013},
doi = {10.1186/1754-6834-6-121},
pmid = {23971993}
}
@article{lin368968,
title = {Dual substrate specificity of an N-acetylglucosamine phosphotransferase system in Clostridium beijerinckii.},
author = {Al Makishah NH, Mitchell WJ.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.01866-13},
pmid = {23995920}
}
@article{lin99328,
title = {Type IV pili in Gram-positive bacteria.},
author = {Melville S, Craig L.},
journal = {Microbiol Mol Biol Rev},
year = {2013},
doi = {10.1128/mmbr.00063-12},
pmid = {24006467}
}
@article{lin99753,
title = {[Key enzymes in butanol fermentation by a facultative anaerobe Bacillus sp. TSH1].},
author = {Duan X, Wang G, Liu H, Xue J, Zhang J.},
journal = {Sheng Wu Gong Cheng Xue Bao},
year = {2013},
pmid = {24010360}
}
@article{lin99639,
title = {Metabolic engineering of Clostridium acetobutylicum for enhanced production of butyric acid.},
author = {Jang YS, Woo HM, Im JA, Kim IH, Lee SY.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-013-5161-x},
pmid = {24013291}
}
@article{lin98962,
title = {Engineering E. coli strain for conversion of short chain fatty acids to bioalcohols.},
author = {Mattam AJ, Yazdani SS.},
journal = {Biotechnol Biofuels},
year = {2013},
doi = {10.1186/1754-6834-6-128},
pmid = {24020887}
}
@article{lin99250,
title = {Clostridium thermocellum transcriptomic profiles after exposure to furfural or heat stress.},
author = {Wilson CM, Yang S, Rodriguez M, Ma Q, Johnson CM, Dice L, Xu Y, Brown SD.},
journal = {Biotechnol Biofuels},
year = {2013},
doi = {10.1186/1754-6834-6-131},
pmid = {24028713}
}
@article{lin99143,
title = {Comparative phenotypic analysis and genome sequence of Clostridium beijerinckii SA-1, an offspring of NCIMB 8052.},
author = {Sandoval-Espinola WJ, Makwana ST, Chinn MS, Thon MR, Azcarate-Peril MA, Bruno-Barcena JM.},
journal = {Microbiology (Reading)},
year = {2013},
doi = {10.1099/mic.0.069534-0},
pmid = {24068240}
}
@article{lin99280,
title = {Manipulating the sleeping beauty mutase operon for the production of 1-propanol in engineered Escherichia coli.},
author = {Srirangan K, Akawi L, Liu X, Westbrook A, Blondeel EJ, Aucoin MG, Moo-Young M, Chou CP.},
journal = {Biotechnol Biofuels},
year = {2013},
doi = {10.1186/1754-6834-6-139},
pmid = {24074355}
}
@article{lin7286,
title = {Engineering a synthetic pathway in cyanobacteria for isopropanol production directly from carbon dioxide and light.},
author = {Kusakabe T, Tatsuke T, Tsuruno K, Hirokawa Y, Atsumi S, Liao JC, Hanai T},
journal = {Metab Eng},
year = {2013},
doi = {10.1016/j.ymben.2013.09.007},
pmid = {24076145}
}
@article{lin99705,
title = {Microbial production of short-chain alkanes.},
author = {Choi YJ, Lee SY.},
journal = {Nature},
year = {2013},
doi = {10.1038/nature12536},
pmid = {24077097}
}
@article{lin99270,
title = {Exploring the mechanism of biocatalyst inhibition in microbial desulfurization.},
author = {Abin-Fuentes A, Mohamed Mel-S, Wang DI, Prather KL.},
journal = {Appl Environ Microbiol},
year = {2013},
doi = {10.1128/aem.02696-13},
pmid = {24096431}
}
@article{lin7285,
title = {Acetone-butanol-ethanol production from corn stover pretreated by alkaline twin-screw extrusion pretreatment.},
author = {Zhang Y, Hou T, Li B, Liu C, Mu X, Wang H},
journal = {Bioprocess Biosyst Eng},
year = {2013},
doi = {10.1007/s00449-013-1063-7},
pmid = {24114460}
}
@article{lin99633,
title = {Impact of sweet sorghum cuticular waxes (SSCW) on acetone-butanol-ethanol fermentation using Clostridium acetobutylicum ABE1201.},
author = {Cai D, Chang Z, Wang C, Ren W, Wang Z, Qin P, Tan T.},
journal = {Bioresour Technol},
year = {2013},
doi = {10.1016/j.biortech.2013.09.122},
pmid = {24140852}
}
@article{lin99149,
title = {The cold-induced two-component system CBO0366/CBO0365 regulates metabolic pathways with novel roles in group I Clostridium botulinum ATCC 3502 cold tolerance.},
author = {Dahlsten E, Zhang Z, Somervuo P, Minton NP, Lindstrom M, Korkeala H.},
journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.03173-13},
pmid = {24162575}
}
@article{lin99067,
title = {Characterizing metabolic interactions in a clostridial co-culture for consolidated bioprocessing.},
author = {Salimi F, Mahadevan R.},
journal = {BMC Biotechnol},
year = {2013},
doi = {10.1186/1472-6750-13-95},
pmid = {24188120}
}
@article{lin99716,
title = {DNA microarrays on ultraviolet-modified surfaces for speciation of bacteria.},
author = {Liu Y, He J, Yang KL.},
journal = {Anal Biochem},
year = {2014},
doi = {10.1016/j.ab.2013.10.033},
pmid = {24189207}
}
@article{lin99115,
title = {Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.},
author = {Wang Q, Venkataramanan KP, Huang H, Papoutsakis ET, Wu CH.},
journal = {BMC Syst Biol},
year = {2013},
doi = {10.1186/1752-0509-7-120},
pmid = {24196194}
}
@article{lin99695,
title = {Biochemical and kinetic characterization of radical S-adenosyl-L-methionine enzyme HydG.},
author = {Driesener RC, Duffus BR, Shepard EM, Bruzas IR, Duschene KS, Coleman NJ, Marrison AP, Salvadori E, Kay CW, Peters JW, Broderick JB, Roach PL.},
journal = {Biochemistry},
year = {2013},
doi = {10.1021/bi401143s},
pmid = {24206022}
}
@article{lin99003,
title = {Developing controllable hypermutable Clostridium cells through manipulating its methyl-directed mismatch repair system.},
author = {Luan G, Cai Z, Gong F, Dong H, Lin Z, Zhang Y, Li Y.},
journal = {Protein Cell},
year = {2013},
doi = {10.1007/s13238-013-3079-9},
pmid = {24214875}
}
@article{lin99358,
title = {MALDI efficiency of metabolites quantitatively associated with their structural properties: a quantitative structure-property relationship (QSPR) approach.},
author = {Yukihira D, Miura D, Fujimura Y, Umemura Y, Yamaguchi S, Funatsu S, Yamazaki M, Ohta T, Inoue H, Shindo M, Wariishi H.},
journal = {J Am Soc Mass Spectrom},
year = {2014},
doi = {10.1007/s13361-013-0772-0},
pmid = {24249043}
}
@article{lin99129,
title = {Network portal: a database for storage, analysis and visualization of biological networks.},
author = {Turkarslan S, Wurtmann EJ, Wu WJ, Jiang N, Bare JC, Foley K, Reiss DJ, Novichkov P, Baliga NS.},
journal = {Nucleic Acids Res},
year = {2014},
doi = {10.1093/nar/gkt1190},
pmid = {24271392}
}
@article{lin98933,
title = {Complete Genome Sequence of the Solvent Producer Clostridium saccharobutylicum NCP262 (DSM 13864).},
author = {Poehlein A, Hartwich K, Krabben P, Ehrenreich A, Liebl W, Durre P, Gottschalk G, Daniel R.},
journal = {Genome Announc},
year = {2013},
doi = {10.1128/genomea.00997-13},
pmid = {24285650}
}
@article{lin99320,
title = {Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass.},
author = {Wilson CM, Rodriguez M, Johnson CM, Martin SL, Chu TM, Wolfinger RD, Hauser LJ, Land ML, Klingeman DM, Syed MH, Ragauskas AJ, Tschaplinski TJ, Mielenz JR, Brown SD.},
journal = {Biotechnol Biofuels},
year = {2013},
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title = {The Clostridium small RNome that responds to stress: the paradigm and importance of toxic metabolite stress in C. acetobutylicum.},
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journal = {BMC Genomics},
year = {2013},
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title = {Dual substrate strategy to enhance butanol production using high cell inoculum and its efficient recovery by pervaporation.},
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journal = {Bioresour Technol},
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title = {Organosolv pretreatment of rice straw for efficient acetone, butanol, and ethanol production.},
author = {Amiri H, Karimi K, Zilouei H.},
journal = {Bioresour Technol},
year = {2014},
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title = {Butanol fermentation.},
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journal = {Environ Technol},
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doi = {10.1080/09593330.2013.827746},
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title = {Rapid construction of metabolic models for a family of Cyanobacteria using a multiple source annotation workflow.},
author = {Mueller TJ, Berla BM, Pakrasi HB, Maranas CD.},
journal = {BMC Syst Biol},
year = {2013},
doi = {10.1186/1752-0509-7-142},
pmid = {24369854}
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title = {A functional recT gene for recombineering of Clostridium.},
author = {Dong H, Tao W, Gong F, Li Y, Zhang Y.},
journal = {J Biotechnol},
year = {2014},
doi = {10.1016/j.jbiotec.2013.12.011},
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title = {ITEP: an integrated toolkit for exploration of microbial pan-genomes.},
author = {Benedict MN, Henriksen JR, Metcalf WW, Whitaker RJ, Price ND.},
journal = {BMC Genomics},
year = {2014},
doi = {10.1186/1471-2164-15-8},
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title = {Biobutanol production in a Clostridium acetobutylicum biofilm reactor integrated with simultaneous product recovery by adsorption.},
author = {Liu D, Chen Y, Ding FY, Zhao T, Wu JL, Guo T, Ren HF, Li BB, Niu HQ, Cao Z, Lin XQ, Xie JJ, He XJ, Ying HJ.},
journal = {Biotechnol Biofuels},
year = {2014},
doi = {10.1186/1754-6834-7-5},
pmid = {24401161}
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@article{lin99646,
title = {Combined overexpression of genes involved in pentose phosphate pathway enables enhanced D-xylose utilization by Clostridium acetobutylicum.},
author = {Jin L, Zhang H, Chen L, Yang C, Yang S, Jiang W, Gu Y.},
journal = {J Biotechnol},
year = {2014},
doi = {10.1016/j.jbiotec.2014.01.002},
pmid = {24412407}
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title = {Molecular characterization of an NADPH-dependent acetoin reductase/2,3-butanediol dehydrogenase from Clostridium beijerinckii NCIMB 8052.},
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journal = {Appl Environ Microbiol},
year = {2014},
doi = {10.1128/aem.04007-13},
pmid = {24441158}
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@article{lin99186,
title = {A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community.},
author = {Vital M, Penton CR, Wang Q, Young VB, Antonopoulos DA, Sogin ML, Morrison HG, Raffals L, Chang EB, Huffnagle GB, Schmidt TM, Cole JR, Tiedje JM.},
journal = {Microbiome},
year = {2013},
doi = {10.1186/2049-2618-1-8},
pmid = {24451334}
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title = {In situ butanol recovery from Clostridium acetobutylicum fermentations by expanded bed adsorption.},
author = {Wiehn M, Staggs K, Wang Y, Nielsen DR},
journal = {Biotechnol Prog},
year = {2013},
doi = {10.1002/btpr.1841},
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title = {Promotion of the Clostridium acetobutylicum ATCC 824 growth and acetone-butanol-ethanol fermentation by flavonoids.},
author = {Wang L, Xia M, Zhang L, Chen H},
journal = {World J Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s11274-014-1619-y},
pmid = {24510404}
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@article{lin99604,
title = {Direct fermentation of gelatinized cassava starch to acetone, butanol, and ethanol using Clostridium acetobutylicum mutant obtained by atmospheric and room temperature plasma.},
author = {Li HG, Luo W, Wang Q, Yu XB.},
journal = {Appl Biochem Biotechnol},
year = {2014},
doi = {10.1007/s12010-014-0765-x},
pmid = {24519630}
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@article{lin99124,
title = {IsoCleft Finder - a web-based tool for the detection and analysis of protein binding-site geometric and chemical similarities.},
author = {Kurbatova N, Chartier M, Zylber MI, Najmanovich R.},
journal = {F1000Res},
year = {2013},
doi = {10.12688/f1000research.2-117.v2},
pmid = {24555058}
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@article{lin7282,
title = {Evaluation of hydrogen production by clostridium strains on beet molasses.},
author = {Avci A, Kilic NK, Donmez G, Donmez S},
journal = {Environ Technol},
year = {2014},
doi = {10.1080/09593330.2013.826251},
pmid = {24600866}
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@article{lin99624,
title = {Engineering cellular robustness of microbes by introducing the GroESL chaperonins from extremophilic bacteria.},
author = {Luan G, Dong H, Zhang T, Lin Z, Zhang Y, Li Y, Cai Z.},
journal = {J Biotechnol},
year = {2014},
doi = {10.1016/j.jbiotec.2014.03.010},
pmid = {24637367}
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@article{lin99608,
title = {Green synthesized iron oxide nanoparticles effect on fermentative hydrogen production by Clostridium acetobutylicum.},
author = {Mohanraj S, Kodhaiyolii S, Rengasamy M, Pugalenthi V.},
journal = {Appl Biochem Biotechnol},
year = {2014},
doi = {10.1007/s12010-014-0843-0},
pmid = {24648140}
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@article{lin98916,
title = {Draft Genome Sequence of Clostridium pasteurianum NRRL B-598, a Potential Butanol or Hydrogen Producer.},
author = {Kolek J, Sedlar K, Provaznik I, Patakova P.},
journal = {Genome Announc},
year = {2014},
doi = {10.1128/genomea.00192-14},
pmid = {24652980}
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@article{lin99988,
title = {A single-tube real-time PCR assay for Mycoplasma detection as a routine quality control of cell therapeutics.},
author = {Janetzko K, Rink G, Hecker A, Bieback K, Kluter H, Bugert P.},
journal = {Transfus Med Hemother},
year = {2014},
doi = {10.1159/000357096},
pmid = {24659951}
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@article{lin99847,
title = {Enhanced butanol production by Clostridium acetobutylicum NCIMB 13357 grown on date fruit as carbon source in P2 medium.},
author = {Khamaiseh EI, Abdul Hamid A, Abdeshahian P, Wan Yusoff WM, Kalil MS.},
journal = {ScientificWorldJournal},
year = {2014},
doi = {10.1155/2014/395754},
pmid = {24672315}
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@article{lin99628,
title = {Solvent screening methodology for in situ ABE extractive fermentation.},
author = {Gonzalez-Penas H, Lu-Chau TA, Moreira MT, Lema JM.},
journal = {Appl Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s00253-014-5634-6},
pmid = {24676748}
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@article{lin7281,
title = {Feasibility study on microencapsulation of anaerobic Clostridium acetobutylicum ATCC 824 by emulsification method for application in biobutanol production.},
author = {Rathore S, Heng PW, Chan LW},
journal = {J Microencapsul},
year = {2014},
doi = {10.3109/02652048.2013.879928},
pmid = {24697168}
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@article{lin99613,
title = {Metabolic engineering of Clostridium acetobutylicum for butyric acid production with high butyric acid selectivity.},
author = {Jang YS, Im JA, Choi SY, Lee JI, Lee SY.},
journal = {Metab Eng},
year = {2014},
doi = {10.1016/j.ymben.2014.03.004},
pmid = {24704310}
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@article{lin99177,
title = {Analysis of biodegradation performance of furfural and 5-hydroxymethylfurfural by Amorphotheca resinae ZN1.},
author = {Ran H, Zhang J, Gao Q, Lin Z, Bao J.},
journal = {Biotechnol Biofuels},
year = {2014},
doi = {10.1186/1754-6834-7-51},
pmid = {24708699}
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@article{lin99638,
title = {Fecal microbiota and antibiotic resistance in ferrets (Mustela putorius furo) from two captive breeding facilities in Italy.},
author = {Nizza S, Rando F, Fiorito F, Pagnini U, Iovane G, De Martino L.},
journal = {Res Vet Sci},
year = {2014},
doi = {10.1016/j.rvsc.2014.03.015},
pmid = {24709054}
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@article{lin99302,
title = {Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.},
author = {Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.},
journal = {Genes (Basel)},
year = {2011},
doi = {10.3390/genes2040869},
pmid = {24710297}
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@article{lin99305,
title = {Evolution of bacterial protein-tyrosine kinases and their relaxed specificity toward substrates.},
author = {Shi L, Ji B, Kolar-Znika L, Boskovic A, Jadeau F, Combet C, Grangeasse C, Franjevic D, Talla E, Mijakovic I.},
journal = {Genome Biol Evol},
year = {2014},
doi = {10.1093/gbe/evu056},
pmid = {24728941}
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@article{lin7280,
title = {Proteomic analyses of the phase transition from acidogenesis to solventogenesis using solventogenic and non-solventogenic Clostridium acetobutylicum strains.},
author = {Jang YS, Han MJ, Lee J, Im JA, Lee YH, Papoutsakis ET, Bennett G, Lee SY},
journal = {Appl Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s00253-014-5738-z},
pmid = {24743985}
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@article{lin99603,
title = {Stable high-titer n-butanol production from sucrose and sugarcane juice by Clostridium acetobutylicum JB200 in repeated batch fermentations.},
author = {Jiang W, Zhao J, Wang Z, Yang ST.},
journal = {Bioresour Technol},
year = {2014},
doi = {10.1016/j.biortech.2014.04.047},
pmid = {24811445}
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@article{lin99573,
title = {Application of new metabolic engineering tools for Clostridium acetobutylicum.},
author = {Lutke-Eversloh T.},
journal = {Appl Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s00253-014-5785-5},
pmid = {24816621}
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@article{lin7279,
title = {Identification of PTS(Fru) as the major fructose uptake system of Clostridium acetobutylicum.},
author = {Voigt C, Bahl H, Fischer RJ},
journal = {Appl Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s00253-014-5809-1},
pmid = {24841119}
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@article{lin99304,
title = {The bacterial phosphoenolpyruvate:carbohydrate phosphotransferase system: regulation by protein phosphorylation and phosphorylation-dependent protein-protein interactions.},
author = {Deutscher J, Ake FM, Derkaoui M, Zebre AC, Cao TN, Bouraoui H, Kentache T, Mokhtari A, Milohanic E, Joyet P.},
journal = {Microbiol Mol Biol Rev},
year = {2014},
doi = {10.1128/mmbr.00001-14},
pmid = {24847021}
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@article{lin99672,
title = {Incorporation of Nasutitermes takasagoensis endoglucanase into cell surface-displayed minicellulosomes in Pichia pastoris X33.},
author = {Ou J, Cao Y.},
journal = {J Microbiol Biotechnol},
year = {2014},
doi = {10.4014/jmb.1402.02034},
pmid = {24851815}
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@article{lin99563,
title = {Elementary mode analysis reveals that Clostridium acetobutylicum modulates its metabolic strategy under external stress.},
author = {Kumar M, Saini S, Gayen K.},
journal = {Mol Biosyst},
year = {2014},
doi = {10.1039/c4mb00126e},
pmid = {24852622}
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@article{lin7278,
title = {Continuous xylose fermentation by Clostridium acetobutylicum--kinetics and energetics issues under acidogenesis conditions.},
author = {Procentese A, Raganati F, Olivieri G, Russo ME, Salatino P, Marzocchella A},
journal = {Bioresour Technol},
year = {2014},
doi = {10.1016/j.biortech.2014.04.054},
pmid = {24852648}
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@article{lin99602,
title = {[Effects of chemically modified sugarcane bagasse on butanol production by immobilized Clostridium acetobutylicum XY16].},
author = {Kong X, He A, Chen J, Chen W, Yin C, Chen P, Wu H, Jiang M.},
journal = {Sheng Wu Gong Cheng Xue Bao},
year = {2014},
pmid = {24941751}
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@article{lin99589,
title = {Atmospheric vs. anaerobic processing of metabolome samples for the metabolite profiling of a strict anaerobic bacterium, Clostridium acetobutylicum.},
author = {Lee SH, Kim S, Kwon MA, Jung YH, Shin YA, Kim KH.},
journal = {Biotechnol Bioeng},
year = {2014},
doi = {10.1002/bit.25314},
pmid = {24942337}
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@article{lin99212,
title = {Genome-wide identification of pathogenicity factors of the free-living amoeba Naegleria fowleri.},
author = {Zysset-Burri DC, Muller N, Beuret C, Heller M, Schurch N, Gottstein B, Wittwer M.},
journal = {BMC Genomics},
year = {2014},
doi = {10.1186/1471-2164-15-496},
pmid = {24950717}
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@article{lin99022,
title = {Transport of magnesium by a bacterial Nramp-related gene.},
author = {Shin JH, Wakeman CA, Goodson JR, Rodionov DA, Freedman BG, Senger RS, Winkler WC.},
journal = {PLoS Genet},
year = {2014},
doi = {10.1371/journal.pgen.1004429},
pmid = {24968120}
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@article{lin98946,
title = {Genome Sequence of the Neurotoxigenic Clostridium butyricum Strain 5521.},
author = {Hassan KA, Elbourne LD, Tetu SG, Johnson EA, Paulsen IT.},
journal = {Genome Announc},
year = {2014},
doi = {10.1128/genomea.00632-14},
pmid = {24970833}
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@article{lin99707,
title = {A synthetic O2 -tolerant butanol pathway exploiting native fatty acid biosynthesis in Escherichia coli.},
author = {Pasztor A, Kallio P, Malatinszky D, Akhtar MK, Jones PR.},
journal = {Biotechnol Bioeng},
year = {2015},
doi = {10.1002/bit.25324},
pmid = {24981220}
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@article{lin99581,
title = {Effects of H2 and electrochemical reducing power on metabolite production by Clostridium acetobutylicum KCTC1037.},
author = {Jeon B, Yi J, Park D.},
journal = {Biosci Biotechnol Biochem},
year = {2014},
doi = {10.1080/09168451.2014.882743},
pmid = {25036842}
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@article{lin99227,
title = {Characterization and evolutionary implications of the triad Asp-Xxx-Glu in group II phosphopantetheinyl transferases.},
author = {Wang YY, Li YD, Liu JB, Ran XX, Guo YY, Ren NN, Chen X, Jiang H, Li YQ.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0103031},
pmid = {25036863}
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@article{lin7276,
title = {Engineering Clostridium acetobutylicum for production of kerosene and diesel blendstock precursors.},
author = {Bormann S, Baer ZC, Sreekumar S, Kuchenreuther JM, Dean Toste F, Blanch HW, Clark DS},
journal = {Metab Eng},
year = {2014},
doi = {10.1016/j.ymben.2014.07.003},
pmid = {25046159}
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@article{lin99635,
title = {Efficient production of acetone-butanol-ethanol (ABE) from cassava by a fermentation-pervaporation coupled process.},
author = {Li J, Chen X, Qi B, Luo J, Zhang Y, Su Y, Wan Y.},
journal = {Bioresour Technol},
year = {2014},
doi = {10.1016/j.biortech.2014.06.102},
pmid = {25058301}
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@article{lin99580,
title = {Butanol production by immobilised Clostridium acetobutylicum in repeated batch, fed-batch, and continuous modes of fermentation.},
author = {Dolejs I, Krasnan V, Stloukal R, Rosenberg M, Rebros M.},
journal = {Bioresour Technol},
year = {2014},
doi = {10.1016/j.biortech.2014.07.039},
pmid = {25108474}
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@article{lin99585,
title = {Structural insights into substrate specificity of crotonase from the n-butanol producing bacterium Clostridium acetobutylicum.},
author = {Kim EJ, Kim YJ, Kim KJ.},
journal = {Biochem Biophys Res Commun},
year = {2014},
doi = {10.1016/j.bbrc.2014.07.139},
pmid = {25110148}
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@article{lin7275,
title = {[Effect of non-ionic surfactants on butanol production with Clostridium acetobutylicum ATCC 824].},
author = {Hou T, Zhang Y, Chen X, Guan J, Mu X},
journal = {Sheng Wu Gong Cheng Xue Bao},
year = {2014},
pmid = {25118402}
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@article{lin98950,
title = {Evaluation of industrial dairy waste (milk dust powder) for acetone-butanol-ethanol production by solventogenic Clostridium species.},
author = {Ujor V, Bharathidasan AK, Cornish K, Ezeji TC.},
journal = {Springerplus},
year = {2014},
doi = {10.1186/2193-1801-3-387},
pmid = {25126487}
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@article{lin99658,
title = {Measurement of biochemical oxygen demand from different wastewater samples using a mediator-less microbial fuel cell biosensor.},
author = {Hsieh MC, Chung YC.},
journal = {Environ Technol},
year = {2014},
doi = {10.1080/09593330.2014.898700},
pmid = {25145173}
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@article{lin99584,
title = {Coenzyme A-transferase-independent butyrate re-assimilation in Clostridium acetobutylicum-evidence from a mathematical model.},
author = {Millat T, Voigt C, Janssen H, Cooksley CM, Winzer K, Minton NP, Bahl H, Fischer RJ, Wolkenhauer O.},
journal = {Appl Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s00253-014-5987-x},
pmid = {25149445}
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@article{lin99065,
title = {The genome of Paenibacillus sabinae T27 provides insight into evolution, organization and functional elucidation of nif and nif-like genes.},
author = {Li X, Deng Z, Liu Z, Yan Y, Wang T, Xie J, Lin M, Cheng Q, Chen S.},
journal = {BMC Genomics},
year = {2014},
doi = {10.1186/1471-2164-15-723},
pmid = {25163544}
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@article{lin99014,
title = {Crystal structure of Clostridium acetobutylicum Aspartate kinase (CaAK): An important allosteric enzyme for amino acids production.},
author = {Manjasetty BA, Chance MR, Burley SK, Panjikar S, Almo SC.},
journal = {Biotechnol Rep (Amst)},
year = {2014},
doi = {10.1016/j.btre.2014.06.009},
pmid = {25170437}
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@article{lin98997,
title = {Metabolic engineering of microorganisms for the production of higher alcohols.},
author = {Choi YJ, Lee J, Jang YS, Lee SY.},
journal = {mBio},
year = {2014},
doi = {10.1128/mbio.01524-14},
pmid = {25182323}
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@article{lin98982,
title = {Redox-responsive repressor Rex modulates alcohol production and oxidative stress tolerance in Clostridium acetobutylicum.},
author = {Zhang L, Nie X, Ravcheev DA, Rodionov DA, Sheng J, Gu Y, Yang S, Jiang W, Yang C.},
journal = {J Bacteriol},
year = {2014},
doi = {10.1128/jb.02037-14},
pmid = {25182496}
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@article{lin7274,
title = {Parallel labeling experiments validate Clostridium acetobutylicum metabolic network model for (13)C metabolic flux analysis.},
author = {Au J, Choi J, Jones SW, Venkataramanan KP, Antoniewicz MR},
journal = {Metab Eng},
year = {2014},
doi = {10.1016/j.ymben.2014.08.002},
pmid = {25183671}
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@article{lin99578,
title = {Whole genome sequencing reveals a novel CRISPR system in industrial Clostridium acetobutylicum.},
author = {Peng L, Pei J, Pang H, Guo Y, Lin L, Huang R.},
journal = {J Ind Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s10295-014-1507-3},
pmid = {25217846}
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@article{lin99006,
title = {Fermentation of oxidized hexose derivatives by Clostridium acetobutylicum.},
author = {Servinsky MD, Liu S, Gerlach ES, Germane KL, Sund CJ.},
journal = {Microb Cell Fact},
year = {2014},
doi = {10.1186/s12934-014-0139-7},
pmid = {25231163}
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@article{lin99667,
title = {Diameter dependent electron transfer kinetics in semiconductor-enzyme complexes.},
author = {Brown KA, Song Q, Mulder DW, King PW.},
journal = {ACS Nano},
year = {2014},
doi = {10.1021/nn504561v},
pmid = {25244026}
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@article{lin99616,
title = {Acetone, butanol, and ethanol production from gelatinized cassava flour by a new isolates with high butanol tolerance.},
author = {Li HG, Ofosu FK, Li KT, Gu QY, Wang Q, Yu XB.},
journal = {Bioresour Technol},
year = {2014},
doi = {10.1016/j.biortech.2014.09.058},
pmid = {25270042}
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@article{lin99572,
title = {Chemostat cultivation and transcriptional analyses of Clostridium acetobutylicum mutants with defects in the acid and acetone biosynthetic pathways.},
author = {Honicke D, Lutke-Eversloh T, Liu Z, Lehmann D, Liebl W, Ehrenreich A.},
journal = {Appl Microbiol Biotechnol},
year = {2014},
doi = {10.1007/s00253-014-6040-9},
pmid = {25280743}
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@article{lin99600,
title = {Enhanced butanol production by eukaryotic Saccharomyces cerevisiae engineered to contain an improved pathway.},
author = {Sakuragi H, Morisaka H, Kuroda K, Ueda M.},
journal = {Biosci Biotechnol Biochem},
year = {2015},
doi = {10.1080/09168451.2014.972330},
pmid = {25348391}
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@article{lin99960,
title = {Metabolic engineering of Methylobacterium extorquens AM1 for 1-butanol production.},
author = {Hu B, Lidstrom ME.},
journal = {Biotechnol Biofuels},
year = {2014},
doi = {10.1186/s13068-014-0156-0},
pmid = {25349627}
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@article{lin99561,
title = {Assessment of morphological changes of Clostridium acetobutylicum by flow cytometry during acetone/butanol/ethanol extractive fermentation.},
author = {Gonzalez-Penas H, Lu-Chau TA, Moreira MT, Lema JM.},
journal = {Biotechnol Lett},
year = {2015},
doi = {10.1007/s10529-014-1702-3},
pmid = {25351808}
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@article{lin7273,
title = {Capturing the response of Clostridium acetobutylicum to chemical stressors using a regulated genome-scale metabolic model.},
author = {Dash S, Mueller TJ, Venkataramanan KP, Papoutsakis ET, Maranas CD},
journal = {Biotechnol Biofuels},
year = {2014},
doi = {10.1186/s13068-014-0144-4},
pmid = {25379054}
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@article{lin99508,
title = {Cell growth behaviors of Clostridium acetobutylicum in a pervaporation membrane bioreactor for butanol fermentation.},
author = {Yao P, Xiao Z, Chen C, Li W, Deng Q.},
journal = {Biotechnol Appl Biochem},
year = {2016},
doi = {10.1002/bab.1318},
pmid = {25388427}
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@article{lin99015,
title = {Genome mining for ribosomally synthesized and post-translationally modified peptides (RiPPs) in anaerobic bacteria.},
author = {Letzel AC, Pidot SJ, Hertweck C.},
journal = {BMC Genomics},
year = {2014},
doi = {10.1186/1471-2164-15-983},
pmid = {25407095}
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@article{lin99593,
title = {Biobutanol production by Clostridium acetobutylicum using xylose recovered from birch Kraft black liquor.},
author = {Kudahettige-Nilsson RL, Helmerius J, Nilsson RT, Sjoblom M, Hodge DB, Rova U.},
journal = {Bioresour Technol},
year = {2015},
doi = {10.1016/j.biortech.2014.11.012},
pmid = {25460986}
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@article{lin7272,
title = {Process development for biological production of butanol from Eastern redcedar.},
author = {Liu K, Atiyeh HK, Pardo-Planas O, Ramachandriya KD, Wilkins MR, Ezeji TC, Ujor V, Tanner RS},
journal = {Bioresour Technol},
year = {2014},
doi = {10.1016/j.biortech.2014.10.148},
pmid = {25460988}
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@article{lin99587,
title = {Simultaneous production of butanol and acetoin by metabolically engineered Clostridium acetobutylicum.},
author = {Liu D, Chen Y, Ding F, Guo T, Xie J, Zhuang W, Niu H, Shi X, Zhu C, Ying H.},
journal = {Metab Eng},
year = {2015},
doi = {10.1016/j.ymben.2014.11.002},
pmid = {25461831}
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@article{lin99567,
title = {Engineering Clostridium acetobutylicum with a histidine kinase knockout for enhanced n-butanol tolerance and production.},
author = {Xu M, Zhao J, Yu L, Tang IC, Xue C, Yang ST.},
journal = {Appl Microbiol Biotechnol},
year = {2015},
doi = {10.1007/s00253-014-6249-7},
pmid = {25472438}
}
@article{lin99599,
title = {Phosphoketolase flux in Clostridium acetobutylicum during growth on L-arabinose.},
author = {Sund CJ, Liu S, Germane KL, Servinsky MD, Gerlach ES, Hurley MM.},
journal = {Microbiology (Reading)},
year = {2015},
doi = {10.1099/mic.0.000008},
pmid = {25481877}
}
@article{lin7271,
title = {Saccharification of rice straw by cellulase from a local Trichoderma harzianum SNRS3 for biobutanol production.},
author = {Rahnama N, Foo HL, Abdul Rahman NA, Ariff A, Md Shah UK},
journal = {BMC Biotechnol},
year = {2014},
doi = {10.1186/s12896-014-0103-y},
pmid = {25496491}
}
@article{lin99586,
title = {Biological butanol production from microalgae-based biodiesel residues by Clostridium acetobutylicum.},
author = {Cheng HH, Whang LM, Chan KC, Chung MC, Wu SH, Liu CP, Tien SY, Chen SY, Chang JS, Lee WJ.},
journal = {Bioresour Technol},
year = {2015},
doi = {10.1016/j.biortech.2014.11.017},
pmid = {25499745}
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@article{lin99939,
title = {Hierarchy in pentose sugar metabolism in Clostridium acetobutylicum.},
author = {Aristilde L, Lewis IA, Park JO, Rabinowitz JD.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.03199-14},
pmid = {25527534}
}
@article{lin7270,
title = {Acetone-butanol-ethanol production from substandard and surplus dates by Egyptian native Clostridium strains.},
author = {Abd-Alla MH, Zohri AA, El-Enany AE, Ali SM},
journal = {Anaerobe},
year = {2014},
doi = {10.1016/j.anaerobe.2014.12.008},
pmid = {25557787}
}
@article{lin99555,
title = {Continuous lactose fermentation by Clostridium acetobutylicum--assessment of solventogenic kinetics.},
author = {Procentese A, Raganati F, Olivieri G, Russo ME, Salatino P, Marzocchella A.},
journal = {Bioresour Technol},
year = {2015},
doi = {10.1016/j.biortech.2015.01.008},
pmid = {25621726}
}
@article{lin99596,
title = {Molecular modulation of pleiotropic regulator CcpA for glucose and xylose coutilization by solvent-producing Clostridium acetobutylicum.},
author = {Wu Y, Yang Y, Ren C, Yang C, Yang S, Gu Y, Jiang W.},
journal = {Metab Eng},
year = {2015},
doi = {10.1016/j.ymben.2015.01.006},
pmid = {25637046}
}
@article{lin99232,
title = {Genome-wide gene order distances support clustering the gram-positive bacteria.},
author = {House CH, Pellegrini M, Fitz-Gibbon ST.},
journal = {Front Microbiol},
year = {2014},
doi = {10.3389/fmicb.2014.00785},
pmid = {25653643}
}
@article{lin99548,
title = {Efficient acetone-butanol-ethanol production (ABE) by Clostridium acetobutylicum XY16 immobilized on chemically modified sugarcane bagasse.},
author = {Kong X, He A, Zhao J, Wu H, Jiang M.},
journal = {Bioprocess Biosyst Eng},
year = {2015},
doi = {10.1007/s00449-015-1377-8},
pmid = {25694132}
}
@article{lin99606,
title = {Nutritional stress induces exchange of cell material and energetic coupling between bacterial species.},
author = {Benomar S, Ranava D, Cardenas ML, Trably E, Rafrafi Y, Ducret A, Hamelin J, Lojou E, Steyer JP, Giudici-Orticoni MT.},
journal = {Nat Commun},
year = {2015},
doi = {10.1038/ncomms7283},
pmid = {25704114}
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@article{lin99559,
title = {Production of an acetone-butanol-ethanol mixture from Clostridium acetobutylicum and its conversion to high-value biofuels.},
author = {Sreekumar S, Baer ZC, Pazhamalai A, Gunbas G, Grippo A, Blanch HW, Clark DS, Toste FD.},
journal = {Nat Protoc},
year = {2015},
doi = {10.1038/nprot.2015.029},
pmid = {25719271}
}
@article{lin99984,
title = {Combining a Clostridial enzyme exhibiting unusual active site plasticity with a remarkably facile sigmatropic rearrangement: rapid, stereocontrolled entry into densely functionalized fluorinated phosphonates for chemical biology.},
author = {Panigrahi K, Applegate GA, Malik G, Berkowitz DB.},
journal = {J Am Chem Soc},
year = {2015},
doi = {10.1021/jacs.5b00022},
pmid = {25719907}
}
@article{lin99615,
title = {Automated 3D RNA structure prediction using the RNAComposer method for riboswitches.},
author = {Purzycka KJ, Popenda M, Szachniuk M, Antczak M, Lukasiak P, Blazewicz J, Adamiak RW.},
journal = {Methods Enzymol},
year = {2015},
doi = {10.1016/bs.mie.2014.10.050},
pmid = {25726459}
}
@article{lin98889,
title = {Genome Sequence of Clostridium acetobutylicum GXAS18-1, a Novel Biobutanol Production Strain.},
author = {Mo X, Pei J, Guo Y, Lin L, Peng L, Kou C, Fan D, Pang H.},
journal = {Genome Announc},
year = {2015},
doi = {10.1128/genomea.00033-15},
pmid = {25744989}
}
@article{lin7269,
title = {Microencapsulation of Clostridium acetobutylicum ATCC 824 spores in gellan gum microspheres for the production of biobutanol.},
author = {Rathore S, Wan Sia Heng P, Chan LW},
journal = {J Microencapsul},
year = {2015},
doi = {10.3109/02652048.2015.1017617},
pmid = {25761520}
}
@article{lin99060,
title = {Changes in membrane plasmalogens of Clostridium pasteurianum during butanol fermentation as determined by lipidomic analysis.},
author = {Kolek J, Patakova P, Melzoch K, Sigler K, Rezanka T.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0122058},
pmid = {25807381}
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@article{lin99276,
title = {Carbon source preference in chemosynthetic hot spring communities.},
author = {Urschel MR, Kubo MD, Hoehler TM, Peters JW, Boyd ES.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.00511-15},
pmid = {25819970}
}
@article{lin99549,
title = {Comparative transcriptome analysis between csrA-disruption Clostridium acetobutylicum and its parent strain.},
author = {Tan Y, Liu ZY, Liu Z, Zheng HJ, Li FL.},
journal = {Mol Biosyst},
year = {2015},
doi = {10.1039/c4mb00600c},
pmid = {25832359}
}
@article{lin98951,
title = {A universal mariner transposon system for forward genetic studies in the genus Clostridium.},
author = {Zhang Y, Grosse-Honebrink A, Minton NP.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0122411},
pmid = {25836262}
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@article{lin7268,
title = {Metabolic engineering of Clostridium tyrobutyricum for n-butanol production: effects of CoA transferase.},
author = {Yu L, Zhao J, Xu M, Dong J, Varghese S, Yu M, Tang IC, Yang ST},
journal = {Appl Microbiol Biotechnol},
year = {2015},
doi = {10.1007/s00253-015-6566-5},
pmid = {25851718}
}
@article{lin99709,
title = {Improved n-butanol tolerance in Escherichia coli by controlling membrane related functions.},
author = {Bui le M, Lee JY, Geraldi A, Rahman Z, Lee JH, Kim SC.},
journal = {J Biotechnol},
year = {2015},
doi = {10.1016/j.jbiotec.2015.03.025},
pmid = {25858152}
}
@article{lin99061,
title = {A microbial platform for renewable propane synthesis based on a fermentative butanol pathway.},
author = {Menon N, Pasztor A, Menon BR, Kallio P, Fisher K, Akhtar MK, Leys D, Jones PR, Scrutton NS.},
journal = {Biotechnol Biofuels},
year = {2015},
doi = {10.1186/s13068-015-0231-1},
pmid = {25866563}
}
@article{lin7267,
title = {Selectional versus mutational mechanism underlying genomic features of bacterial strand asymmetry: a case study in Clostridium acetobutylicum.},
author = {Zhao HL, Xia ZK, Hua ZG, Wei W},
journal = {Genet Mol Res},
year = {2015},
doi = {10.4238/2015.March.20.1},
pmid = {25867337}
}
@article{lin98809,
title = {Biobutanol from cheese whey.},
author = {Becerra M, Cerdan ME, Gonzalez-Siso MI.},
journal = {Microb Cell Fact},
year = {2015},
doi = {10.1186/s12934-015-0200-1},
pmid = {25889728}
}
@article{lin7266,
title = {Metabolic engineering of Clostridium tyrobutyricum for n-butanol production through co-utilization of glucose and xylose.},
author = {Yu L, Xu M, Tang IC, Yang ST},
journal = {Biotechnol Bioeng},
year = {2015},
doi = {10.1002/bit.25613},
pmid = {25894463}
}
@article{lin98906,
title = {Butanol production from hydrothermolysis-pretreated switchgrass: Quantification of inhibitors and detoxification of hydrolyzate.},
author = {Liu K, Atiyeh HK, Pardo-Planas O, Ezeji TC, Ujor V, Overton JC, Berning K, Wilkins MR, Tanner RS.},
journal = {Bioresour Technol},
year = {2015},
doi = {10.1016/j.biortech.2015.04.018},
pmid = {25898092}
}
@article{lin99102,
title = {Analysis of Clostridium beijerinckii NCIMB 8052's transcriptional response to ferulic acid and its application to enhance the strain tolerance.},
author = {Lee S, Lee JH, Mitchell RJ.},
journal = {Biotechnol Biofuels},
year = {2015},
doi = {10.1186/s13068-015-0252-9},
pmid = {25904983}
}
@article{lin99152,
title = {Efficient Genome Editing in Clostridium cellulolyticum via CRISPR-Cas9 Nickase.},
author = {Xu T, Li Y, Shi Z, Hemme CL, Li Y, Zhu Y, Van Nostrand JD, He Z, Zhou J.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.00873-15},
pmid = {25911483}
}
@article{lin99107,
title = {Fermentation and hydrogen metabolism affect uranium reduction by clostridia.},
author = {Gao W, Francis AJ.},
journal = {ISRN Biotechnol},
year = {2013},
doi = {10.5402/2013/657160},
pmid = {25937978}
}
@article{lin7265,
title = {Feasibility of biohydrogen production from industrial wastes using defined microbial co-culture.},
author = {Chen P, Wang Y, Yan L, Wang Y, Li S, Yan X, Wang N, Liang N, Li H},
journal = {Biol Res},
year = {2015},
doi = {10.1186/s40659-015-0015-x},
pmid = {25943991}
}
@article{lin99651,
title = {Evaluation of fluorimetric pH sensors for bioprocess monitoring at low pH.},
author = {Janzen NH, Schmidt M, Krause C, Weuster-Botz D.},
journal = {Bioprocess Biosyst Eng},
year = {2015},
doi = {10.1007/s00449-015-1409-4},
pmid = {25969385}
}
@article{lin99557,
title = {Elimination of carbon catabolite repression in Clostridium acetobutylicum--a journey toward simultaneous use of xylose and glucose.},
author = {Bruder M, Moo-Young M, Chung DA, Chou CP.},
journal = {Appl Microbiol Biotechnol},
year = {2015},
doi = {10.1007/s00253-015-6611-4},
pmid = {25981995}
}
@article{lin7264,
title = {Metabolic engineering of Clostridium tyrobutyricum for n-butanol production from maltose and soluble starch by overexpressing alpha-glucosidase.},
author = {Yu L, Xu M, Tang IC, Yang ST},
journal = {Appl Microbiol Biotechnol},
year = {2015},
doi = {10.1007/s00253-015-6680-4},
pmid = {26002632}
}
@article{lin7263,
title = {In situ hydrogen, acetone, butanol, ethanol and microdiesel production by Clostridium acetobutylicum ATCC 824 from oleaginous fungal biomass.},
author = {Hassan EA, Abd-Alla MH, Bagy MM, Morsy FM},
journal = {Anaerobe},
year = {2015},
doi = {10.1016/j.anaerobe.2015.05.007},
pmid = {26014369}
}
@article{lin99538,
title = {Continuous xylose fermentation by Clostridium acetobutylicum--Assessment of solventogenic kinetics.},
author = {Procentese A, Raganati F, Olivieri G, Russo ME, Salatino P, Marzocchella A.},
journal = {Bioresour Technol},
year = {2015},
doi = {10.1016/j.biortech.2015.05.041},
pmid = {26025352}
}
@article{lin7262,
title = {Butanol production from hexoses and pentoses by fermentation of Clostridium acetobutylicum.},
author = {Raganati F, Olivieri G, Gotz P, Marzocchella A, Salatino P},
journal = {Anaerobe},
year = {2015},
doi = {10.1016/j.anaerobe.2015.05.008},
pmid = {26026401}
}
@article{lin99522,
title = {A New Shuttle Plasmid That Stably Replicates in Clostridium acetobutylicum.},
author = {Lee SH, Kwon MA, Choi S, Kim S, Kim J, Shin YA, Kim KH.},
journal = {J Microbiol Biotechnol},
year = {2015},
doi = {10.4014/jmb.1504.04070},
pmid = {26032368}
}
@article{lin7261,
title = {Developing a mesophilic co-culture for direct conversion of cellulose to butanol in consolidated bioprocess.},
author = {Wang Z, Cao G, Zheng J, Fu D, Song J, Zhang J, Zhao L, Yang Q},
journal = {Biotechnol Biofuels},
year = {2015},
doi = {10.1186/s13068-015-0266-3},
pmid = {26089984}
}
@article{lin7260,
title = {Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.},
author = {Liao C, Seo SO, Celik V, Liu H, Kong W, Wang Y, Blaschek H, Jin YS, Lu T},
journal = {Proc Natl Acad Sci U S A},
year = {2015},
doi = {10.1073/pnas.1423143112},
pmid = {26100881}
}
@article{lin99569,
title = {The Phosphotransferase System in Solventogenic Clostridia.},
author = {Mitchell WJ.},
journal = {J Mol Microbiol Biotechnol},
year = {2015},
doi = {10.1159/000375125},
pmid = {26159074}
}
@article{lin99258,
title = {Structure and Evolution of the Archaeal Lipid Synthesis Enzyme sn-Glycerol-1-phosphate Dehydrogenase.},
author = {Carbone V, Schofield LR, Zhang Y, Sang C, Dey D, Hannus IM, Martin WF, Sutherland-Smith AJ, Ronimus RS.},
journal = {J Biol Chem},
year = {2015},
doi = {10.1074/jbc.m115.647461},
pmid = {26175150}
}
@article{lin99579,
title = {Improvement of acetone, butanol, and ethanol production from woody biomass using organosolv pretreatment.},
author = {Amiri H, Karimi K.},
journal = {Bioprocess Biosyst Eng},
year = {2015},
doi = {10.1007/s00449-015-1437-0},
pmid = {26178242}
}
@article{lin99562,
title = {The role of pH control on biohydrogen production by single stage hybrid dark- and photo-fermentation.},
author = {Zagrodnik R, Laniecki M.},
journal = {Bioresour Technol},
year = {2015},
doi = {10.1016/j.biortech.2015.07.028},
pmid = {26196419}
}
@article{lin99118,
title = {Model-driven intracellular redox status modulation for increasing isobutanol production in Escherichia coli.},
author = {Liu J, Qi H, Wang C, Wen J.},
journal = {Biotechnol Biofuels},
year = {2015},
doi = {10.1186/s13068-015-0291-2},
pmid = {26236397}
}
@article{lin99530,
title = {High-Level Butanol Production from Cassava Starch by a Newly Isolated Clostridium acetobutylicum.},
author = {Li S, Guo Y, Lu F, Huang J, Pang Z.},
journal = {Appl Biochem Biotechnol},
year = {2015},
doi = {10.1007/s12010-015-1781-1},
pmid = {26245261}
}
@article{lin7259,
title = {Structural analysis of Clostridium acetobutylicum ATCC 824 glycoside hydrolase from CAZy family GH105.},
author = {Germane KL, Servinsky MD, Gerlach ES, Sund CJ, Hurley MM},
journal = {Acta Crystallogr F Struct Biol Commun},
year = {2015},
doi = {10.1107/S2053230X15012121},
pmid = {26249707}
}
@article{lin99543,
title = {Solvents Production from a Mixture of Glucose and Xylose by Mixed Fermentation of Clostridium acetobutylicum and Saccharomyces cerevisiae.},
author = {Qi GX, Xiong L, Huang C, Chen XF, Lin XQ, Chen XD.},
journal = {Appl Biochem Biotechnol},
year = {2015},
doi = {10.1007/s12010-015-1790-0},
pmid = {26265395}
}
@article{lin99597,
title = {Isolation and characterisation of non-anaerobic butanol-producing symbiotic system TSH06.},
author = {Wang G, Wu P, Liu Y, Mi S, Mai S, Gu C, Wang G, Liu H, Zhang J, Borresen BT, Mellemsaether E, Kotlar HK.},
journal = {Appl Microbiol Biotechnol},
year = {2015},
doi = {10.1007/s00253-015-6864-y},
pmid = {26272091}
}
@article{lin7258,
title = {Characterization of an acetoin reductase/2,3-butanediol dehydrogenase from Clostridium ljungdahlii DSM 13528.},
author = {Tan Y, Liu ZY, Liu Z, Li FL},
journal = {Enzyme Microb Technol},
year = {2015},
doi = {10.1016/j.enzmictec.2015.06.011},
pmid = {26320708}
}
@article{lin99215,
title = {Characterization of hemicellulase and cellulase from the extremely thermophilic bacterium Caldicellulosiruptor owensensis and their potential application for bioconversion of lignocellulosic biomass without pretreatment.},
author = {Peng X, Qiao W, Mi S, Jia X, Su H, Han Y.},
journal = {Biotechnol Biofuels},
year = {2015},
doi = {10.1186/s13068-015-0313-0},
pmid = {26322125}
}
@article{lin99664,
title = {Electrochemical Measurements of the Kinetics of Inhibition of Two FeFe Hydrogenases by O2 Demonstrate That the Reaction Is Partly Reversible.},
author = {Orain C, Saujet L, Gauquelin C, Soucaille P, Meynial-Salles I, Baffert C, Fourmond V, Bottin H, Leger C.},
journal = {J Am Chem Soc},
year = {2015},
doi = {10.1021/jacs.5b06934},
pmid = {26352172}
}
@article{lin99540,
title = {Small acid-soluble spore proteins of Clostridium acetobutylicum are able to protect DNA in vitro and are specifically cleaved by germination protease GPR and spore protease YyaC.},
author = {Wetzel D, Fischer RJ.},
journal = {Microbiology (Reading)},
year = {2015},
doi = {10.1099/mic.0.000162},
pmid = {26362088}
}
@article{lin99803,
title = {Atypical effect of temperature tuning on the insertion of the catalytic iron-sulfur center in a recombinant [FeFe]-hydrogenase.},
author = {Morra S, Cordara A, Gilardi G, Valetti F.},
journal = {Protein Sci},
year = {2015},
doi = {10.1002/pro.2805},
pmid = {26362685}
}
@article{lin99541,
title = {Combination of RNA sequencing and metabolite data to elucidate improved toxic compound tolerance and butanol fermentation of Clostridium acetobutylicum from wheat straw hydrolysate by supplying sodium sulfide.},
author = {Jin Y, Fang Y, Huang M, Sun J, Huang Y, Gao X, Li R, He K, Zhao H.},
journal = {Bioresour Technol},
year = {2015},
doi = {10.1016/j.biortech.2015.08.139},
pmid = {26364231}
}
@article{lin98910,
title = {Redox-switch regulatory mechanism of thiolase from Clostridium acetobutylicum.},
author = {Kim S, Jang YS, Ha SC, Ahn JW, Kim EJ, Lim JH, Cho C, Ryu YS, Lee SK, Lee SY, Kim KJ.},
journal = {Nat Commun},
year = {2015},
doi = {10.1038/ncomms9410},
pmid = {26391388}
}
@article{lin99568,
title = {Novel clostridial fusants in comparison with co-cultured counterpart species for enhanced production of biobutanol using green renewable and sustainable feedstock.},
author = {Syed K, Dahman Y.},
journal = {Bioprocess Biosyst Eng},
year = {2015},
doi = {10.1007/s00449-015-1462-z},
pmid = {26395807}
}
@article{lin99962,
title = {Non-Conserved Residues in Clostridium acetobutylicum tRNA(Ala) Contribute to tRNA Tuning for Efficient Antitermination of the alaS T Box Riboswitch.},
author = {Liu LC, Grundy FJ, Henkin TM.},
journal = {Life (Basel)},
year = {2015},
doi = {10.3390/life5041567},
pmid = {26426057}
}
@article{lin98913,
title = {Draft Genome Sequence of the Strict Anaerobe Clostridium homopropionicum LuHBu1 (DSM 5847).},
author = {Beck MH, Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Durre P.},
journal = {Genome Announc},
year = {2015},
doi = {10.1128/genomea.01112-15},
pmid = {26430034}
}
@article{lin99574,
title = {Exploring the inhibitory characteristics of acid hydrolysates upon butanol fermentation: A toxicological assessment.},
author = {Wang Y, Guo W, Chen BY, Cheng CL, Lo YC, Ho SH, Chang JS, Ren N.},
journal = {Bioresour Technol},
year = {2015},
doi = {10.1016/j.biortech.2015.09.075},
pmid = {26433154}
}
@article{lin7257,
title = {Spontaneous large-scale autolysis in Clostridium acetobutylicum contributes to generation of more spores.},
author = {Liu Z, Qiao K, Tian L, Zhang Q, Liu ZY, Li FL},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.00950},
pmid = {26441884}
}
@article{lin99291,
title = {Thermophilic and alkaliphilic Actinobacteria: biology and potential applications.},
author = {Shivlata L, Satyanarayana T.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.01014},
pmid = {26441937}
}
@article{lin7256,
title = {Feasibility of installing and maintaining anaerobiosis using Escherichia coli HD701 as a facultative anaerobe for hydrogen production by Clostridium acetobutylicum ATCC 824 from various carbohydrates.},
author = {Hassan SH, Morsy FM},
journal = {Enzyme Microb Technol},
year = {2015},
doi = {10.1016/j.enzmictec.2015.08.002},
pmid = {26453472}
}
@article{lin99103,
title = {Bio-butanol production from glycerol with Clostridium pasteurianum CH4: the effects of butyrate addition and in situ butanol removal via membrane distillation.},
author = {Lin DS, Yen HW, Kao WC, Cheng CL, Chen WM, Huang CC, Chang JS.},
journal = {Biotechnol Biofuels},
year = {2015},
doi = {10.1186/s13068-015-0352-6},
pmid = {26468321}
}
@article{lin99534,
title = {Enhancing acetone biosynthesis and acetone-butanol-ethanol fermentation performance by co-culturing Clostridium acetobutylicum/Saccharomyces cerevisiae integrated with exogenous acetate addition.},
author = {Luo H, Ge L, Zhang J, Ding J, Chen R, Shi Z.},
journal = {Bioresour Technol},
year = {2016},
doi = {10.1016/j.biortech.2015.09.116},
pmid = {26476171}
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@article{lin99609,
title = {The effect of a C298D mutation in CaHydA [FeFe]-hydrogenase: Insights into the protein-metal cluster interaction by EPR and FTIR spectroscopic investigation.},
author = {Morra S, Maurelli S, Chiesa M, Mulder DW, Ratzloff MW, Giamello E, King PW, Gilardi G, Valetti F.},
journal = {Biochim Biophys Acta},
year = {2016},
doi = {10.1016/j.bbabio.2015.10.005},
pmid = {26482707}
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@article{lin98983,
title = {Enhancing Butanol Production under the Stress Environments of Co-Culturing Clostridium acetobutylicum/Saccharomyces cerevisiae Integrated with Exogenous Butyrate Addition.},
author = {Luo H, Ge L, Zhang J, Zhao Y, Ding J, Li Z, He Z, Chen R, Shi Z.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0141160},
pmid = {26489085}
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@article{lin99128,
title = {Characterization of a family 43 beta-xylosidase from the xylooligosaccharide utilizing putative probiotic Weissella sp. strain 92.},
author = {Falck P, Linares-Pasten JA, Adlercreutz P, Karlsson EN.},
journal = {Glycobiology},
year = {2016},
doi = {10.1093/glycob/cwv092},
pmid = {26494804}
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@article{lin99296,
title = {Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities.},
author = {Peabody MA, Van Rossum T, Lo R, Brinkman FS.},
journal = {BMC Bioinformatics},
year = {2015},
doi = {10.1186/s12859-015-0788-5},
pmid = {26537885}
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@article{lin99531,
title = {The metabolic network of Clostridium acetobutylicum: Comparison of the approximate Bayesian computation via sequential Monte Carlo (ABC-SMC) and profile likelihood estimation (PLE) methods for determinability analysis.},
author = {Thorn GJ, King JR.},
journal = {Math Biosci},
year = {2016},
doi = {10.1016/j.mbs.2015.10.016},
pmid = {26561777}
}
@article{lin99537,
title = {Acetone-butanol-ethanol production from Kraft paper mill sludge by simultaneous saccharification and fermentation.},
author = {Guan W, Shi S, Tu M, Lee YY.},
journal = {Bioresour Technol},
year = {2016},
doi = {10.1016/j.biortech.2015.10.102},
pmid = {26562687}
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@article{lin98921,
title = {Transcriptional analysis of micronutrient zinc-associated response for enhanced carbohydrate utilization and earlier solventogenesis in Clostridium acetobutylicum.},
author = {Wu YD, Xue C, Chen LJ, Wan HH, Bai FW.},
journal = {Sci Rep},
year = {2015},
doi = {10.1038/srep16598},
pmid = {26586044}
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@article{lin99084,
title = {COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.},
author = {Moretto M, Sonego P, Dierckxsens N, Brilli M, Bianco L, Ledezma-Tejeida D, Gama-Castro S, Galardini M, Romualdi C, Laukens K, Collado-Vides J, Meysman P, Engelen K.},
journal = {Nucleic Acids Res},
year = {2016},
doi = {10.1093/nar/gkv1251},
pmid = {26586805}
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@article{lin99551,
title = {An unexpected negative influence of light intensity on hydrogen production by dark fermentative bacteria Clostridium beijerinckii.},
author = {Zagrodnik R, Laniecki M.},
journal = {Bioresour Technol},
year = {2016},
doi = {10.1016/j.biortech.2015.10.049},
pmid = {26602144}
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@article{lin98943,
title = {A Quantitative System-Scale Characterization of the Metabolism of Clostridium acetobutylicum.},
author = {Yoo M, Bestel-Corre G, Croux C, Riviere A, Meynial-Salles I, Soucaille P.},
journal = {mBio},
year = {2015},
doi = {10.1128/mbio.01808-15},
pmid = {26604256}
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@article{lin99524,
title = {Comparative transcriptomic analysis of Clostridium acetobutylicum biofilm and planktonic cells.},
author = {Liu D, Xu J, Wang Y, Chen Y, Shen X, Niu H, Guo T, Ying H.},
journal = {J Biotechnol},
year = {2016},
doi = {10.1016/j.jbiotec.2015.11.017},
pmid = {26621081}
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@article{lin7255,
title = {In silico analysis of Clostridium acetobutylicum ATCC 824 metabolic response to an external electron supply.},
author = {Gallardo R, Acevedo A, Quintero J, Paredes I, Conejeros R, Aroca G},
journal = {Bioprocess Biosyst Eng},
year = {2015},
doi = {10.1007/s00449-015-1513-5},
pmid = {26650720}
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@article{lin99235,
title = {Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation.},
author = {Sander K, Wilson CM, Rodriguez M, Klingeman DM, Rydzak T, Davison BH, Brown SD.},
journal = {Biotechnol Biofuels},
year = {2015},
doi = {10.1186/s13068-015-0394-9},
pmid = {26692898}
}
@article{lin7254,
title = {Periodic-peristole agitation for process enhancement of butanol fermentation.},
author = {Xia ML, Wang L, Yang ZX, Chen HZ},
journal = {Biotechnol Biofuels},
year = {2015},
doi = {10.1186/s13068-015-0409-6},
pmid = {26702300}
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@article{lin7253,
title = {Mutant generation by allelic exchange and genome resequencing of the biobutanol organism Clostridium acetobutylicum ATCC 824.},
author = {Ehsaan M, Kuit W, Zhang Y, Cartman ST, Heap JT, Winzer K, Minton NP},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-015-0410-0},
pmid = {26732067}
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@article{lin98817,
title = {Sugar uptake by the solventogenic clostridia.},
author = {Mitchell WJ.},
journal = {World J Microbiol Biotechnol},
year = {2016},
doi = {10.1007/s11274-015-1981-4},
pmid = {26748809}
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@article{lin99533,
title = {Metabolic modeling of clostridia: current developments and applications.},
author = {Dash S, Ng CY, Maranas CD.},
journal = {FEMS Microbiol Lett},
year = {2016},
doi = {10.1093/femsle/fnw004},
pmid = {26755502}
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@article{lin99930,
title = {Butanol production under microaerobic conditions with a symbiotic system of Clostridium acetobutylicum and Bacillus cereus.},
author = {Wu P, Wang G, Wang G, Borresen BT, Liu H, Zhang J.},
journal = {Microb Cell Fact},
year = {2016},
doi = {10.1186/s12934-016-0412-z},
pmid = {26762531}
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@article{lin99499,
title = {Single Crossover-Mediated Markerless Genome Engineering in Clostridium acetobutylicum.},
author = {Lee SH, Kim HJ, Shin YA, Kim KH, Lee SJ.},
journal = {J Microbiol Biotechnol},
year = {2016},
doi = {10.4014/jmb.1512.12012},
pmid = {26767573}
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@article{lin99560,
title = {Impact of the chemicals, essential for the purification process of strict Fe-hydrogenase, on the corrosion of mild steel.},
author = {Rouvre I, Gauquelin C, Meynial-Salles I, Basseguy R.},
journal = {Bioelectrochemistry},
year = {2016},
doi = {10.1016/j.bioelechem.2015.12.006},
pmid = {26774688}
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@article{lin99073,
title = {Ortholog-Finder: A Tool for Constructing an Ortholog Data Set.},
author = {Horiike T, Minai R, Miyata D, Nakamura Y, Tateno Y.},
journal = {Genome Biol Evol},
year = {2016},
doi = {10.1093/gbe/evw005},
pmid = {26782935}
}
@article{lin99119,
title = {Dam and Dcm methylations prevent gene transfer into Clostridium pasteurianum NRRL B-598: development of methods for electrotransformation, conjugation, and sonoporation.},
author = {Kolek J, Sedlar K, Provaznik I, Patakova P.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0436-y},
pmid = {26793273}
}
@article{lin7252,
title = {Raman spectroscopy detects phenotypic differences among Escherichia coli enriched for 1-butanol tolerance using a metagenomic DNA library.},
author = {Freedman BG, Zu TN, Wallace RS, Senger RS},
journal = {Biotechnol J},
year = {2016},
doi = {10.1002/biot.201500144},
pmid = {26814030}
}
@article{lin7251,
title = {Construction of a restriction-less, marker-less mutant useful for functional genomic and metabolic engineering of the biofuel producer Clostridium acetobutylicum.},
author = {Croux C, Nguyen NP, Lee J, Raynaud C, Saint-Prix F, Gonzalez-Pajuelo M, Meynial-Salles I, Soucaille P},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0432-2},
pmid = {26839586}
}
@article{lin99515,
title = {Synergistic effect of calcium and zinc on glucose/xylose utilization and butanol tolerance of Clostridium acetobutylicum.},
author = {Wu Y, Xue C, Chen L, Yuan W, Bai F.},
journal = {FEMS Microbiol Lett},
year = {2016},
doi = {10.1093/femsle/fnw023},
pmid = {26850441}
}
@article{lin99189,
title = {Improving isopropanol tolerance and production of Clostridium beijerinckii DSM 6423 by random mutagenesis and genome shuffling.},
author = {Gerando HM, Fayolle-Guichard F, Rudant L, Millah SK, Monot F, Lopes Ferreira N, Lopez-Contreras AM.},
journal = {Appl Microbiol Biotechnol},
year = {2016},
doi = {10.1007/s00253-016-7302-5},
pmid = {26852409}
}
@article{lin98952,
title = {Integrated intracellular metabolic profiling and pathway analysis approaches reveal complex metabolic regulation by Clostridium acetobutylicum.},
author = {Liu H, Huang D, Wen J.},
journal = {Microb Cell Fact},
year = {2016},
doi = {10.1186/s12934-016-0436-4},
pmid = {26879529}
}
@article{lin99082,
title = {Engineering Escherichia coli for Microbial Production of Butanone.},
author = {Srirangan K, Liu X, Akawi L, Bruder M, Moo-Young M, Chou CP.},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/aem.03964-15},
pmid = {26896132}
}
@article{lin99577,
title = {Improving the performance of solventogenic clostridia by reinforcing the biotin synthetic pathway.},
author = {Yang Y, Lang N, Yang G, Yang S, Jiang W, Gu Y.},
journal = {Metab Eng},
year = {2016},
doi = {10.1016/j.ymben.2016.02.006},
pmid = {26924180}
}
@article{lin99516,
title = {Enhanced butanol production from cassava with Clostridium acetobutylicum by genome shuffling.},
author = {Li SB, Qian Y, Liang ZW, Guo Y, Zhao MM, Pang ZW.},
journal = {World J Microbiol Biotechnol},
year = {2016},
doi = {10.1007/s11274-016-2022-7},
pmid = {26925615}
}
@article{lin99630,
title = {Acetone production with metabolically engineered strains of Acetobacterium woodii.},
author = {Hoffmeister S, Gerdom M, Bengelsdorf FR, Linder S, Fluchter S, Ozturk H, Blumke W, May A, Fischer RJ, Bahl H, Durre P.},
journal = {Metab Eng},
year = {2016},
doi = {10.1016/j.ymben.2016.03.001},
pmid = {26971669}
}
@article{lin99583,
title = {Co-production of acetone and ethanol with molar ratio control enables production of improved gasoline or jet fuel blends.},
author = {Baer ZC, Bormann S, Sreekumar S, Grippo A, Toste FD, Blanch HW, Clark DS.},
journal = {Biotechnol Bioeng},
year = {2016},
doi = {10.1002/bit.25978},
pmid = {26987294}
}
@article{lin99518,
title = {Overexpression of two stress-responsive, small, non-coding RNAs, 6S and tmRNA, imparts butanol tolerance in Clostridium acetobutylicum.},
author = {Jones AJ, Venkataramanan KP, Papoutsakis T.},
journal = {FEMS Microbiol Lett},
year = {2016},
doi = {10.1093/femsle/fnw063},
pmid = {26989157}
}
@article{lin99507,
title = {Modelling the role of CtfA/B in reverse shift continuous culture experiments of Clostridium acetobutylicum.},
author = {Thorn GJ, King JR.},
journal = {Math Biosci},
year = {2016},
doi = {10.1016/j.mbs.2016.03.003},
pmid = {26997560}
}
@article{lin7250,
title = {Development of an inducible transposon system for efficient random mutagenesis in Clostridium acetobutylicum.},
author = {Zhang Y, Xu S, Chai C, Yang S, Jiang W, Minton NP, Gu Y},
journal = {FEMS Microbiol Lett},
year = {2016},
doi = {10.1093/femsle/fnw065},
pmid = {27001972}
}
@article{lin99526,
title = {Direct in situ butanol recovery inside the packed bed during continuous acetone-butanol-ethanol (ABE) fermentation.},
author = {Wang YR, Chiang YS, Chuang PJ, Chao YP, Li SY.},
journal = {Appl Microbiol Biotechnol},
year = {2016},
doi = {10.1007/s00253-016-7443-6},
pmid = {27005413}
}
@article{lin99528,
title = {Calorimetric studies of the growth of anaerobic microbes.},
author = {Miyake H, Maeda Y, Ishikawa T, Tanaka A.},
journal = {J Biosci Bioeng},
year = {2016},
doi = {10.1016/j.jbiosc.2016.02.006},
pmid = {27012376}
}
@article{lin98965,
title = {Relating Carbon and Nitrogen Isotope Effects to Reaction Mechanisms during Aerobic or Anaerobic Degradation of RDX (Hexahydro-1,3,5-Trinitro-1,3,5-Triazine) by Pure Bacterial Cultures.},
author = {Fuller ME, Heraty L, Condee CW, Vainberg S, Sturchio NC, Bohlke JK, Hatzinger PB.},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/aem.00073-16},
pmid = {27016566}
}
@article{lin99523,
title = {Butanol production employing fed-batch fermentation by Clostridium acetobutylicum GX01 using alkali-pretreated sugarcane bagasse hydrolysed by enzymes from Thermoascus aurantiacus QS 7-2-4.},
author = {Pang ZW, Lu W, Zhang H, Liang ZW, Liang JJ, Du LW, Duan CJ, Feng JX.},
journal = {Bioresour Technol},
year = {2016},
doi = {10.1016/j.biortech.2016.04.013},
pmid = {27089425}
}
@article{lin98980,
title = {Elucidation of the roles of adhE1 and adhE2 in the primary metabolism of Clostridium acetobutylicum by combining in-frame gene deletion and a quantitative system-scale approach.},
author = {Yoo M, Croux C, Meynial-Salles I, Soucaille P.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0507-0},
pmid = {27118994}
}
@article{lin99051,
title = {Distribution of glucan-branching enzymes among prokaryotes.},
author = {Suzuki E, Suzuki R.},
journal = {Cell Mol Life Sci},
year = {2016},
doi = {10.1007/s00018-016-2243-9},
pmid = {27141939}
}
@article{lin99520,
title = {Alternative non-chromatographic method for alcohols determination in Clostridium acetobutylicum fermentations.},
author = {Noriega-Medrano LJ, Vega-Estrada J, Ortega-Lopez J, Ruiz-Medrano R, Cristiani-Urbina E, Montes-Horcasitas Mdel C.},
journal = {J Microbiol Methods},
year = {2016},
doi = {10.1016/j.mimet.2016.05.001},
pmid = {27155258}
}
@article{lin99512,
title = {Stable and enhanced gene expression in Clostridium acetobutylicum using synthetic untranslated regions with a stem-loop.},
author = {Lee J, Jang YS, Papoutsakis ET, Lee SY.},
journal = {J Biotechnol},
year = {2016},
doi = {10.1016/j.jbiotec.2016.05.020},
pmid = {27188957}
}
@article{lin7249,
title = {Application to Photocatalytic H2 Production of a Whole-Cell Reaction by Recombinant Escherichia coli Cells Expressing [FeFe]-Hydrogenase and Maturases Genes.},
author = {Honda Y, Hagiwara H, Ida S, Ishihara T},
journal = {Angew Chem Int Ed Engl},
year = {2016},
doi = {10.1002/anie.201600177},
pmid = {27194524}
}
@article{lin7242,
title = {Periodic peristalsis increasing acetone-butanol-ethanol productivity during simultaneous saccharification and fermentation of steam-exploded corn straw.},
author = {Li J, Wang L, Chen H},
journal = {J Biosci Bioeng},
year = {2016},
doi = {10.1016/j.jbiosc.2016.04.009},
pmid = {27212267}
}
@article{lin7248,
title = {CRISPR-based genome editing and expression control systems in Clostridium acetobutylicum and Clostridium beijerinckii.},
author = {Li Q, Chen J, Minton NP, Zhang Y, Wen Z, Liu J, Yang H, Zeng Z, Ren X, Yang J, Gu Y, Jiang W, Jiang Y, Yang S},
journal = {Biotechnol J},
year = {2016},
doi = {10.1002/biot.201600053},
pmid = {27213844}
}
@article{lin7247,
title = {Production of a functional cell wall-anchored minicellulosome by recombinant Clostridium acetobutylicum ATCC 824.},
author = {Willson BJ, Kovacs K, Wilding-Steele T, Markus R, Winzer K, Minton NP},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0526-x},
pmid = {27222664}
}
@article{lin7246,
title = {Fermentation of residual glycerol by Clostridium acetobutylicum ATCC 824 in pure and mixed cultures.},
author = {Dams RI, Guilherme AA, Vale MS, Nunes VF, Leitao RC, Santaella ST},
journal = {Environ Technol},
year = {2016},
doi = {10.1080/09593330.2016.1173114},
pmid = {27230401}
}
@article{lin98939,
title = {A roadmap for gene system development in Clostridium.},
author = {Minton NP, Ehsaan M, Humphreys CM, Little GT, Baker J, Henstra AM, Liew F, Kelly ML, Sheng L, Schwarz K, Zhang Y.},
journal = {Anaerobe},
year = {2016},
doi = {10.1016/j.anaerobe.2016.05.011},
pmid = {27234263}
}
@article{lin7245,
title = {Quantitative proteomic analysis of the influence of lignin on biofuel production by Clostridium acetobutylicum ATCC 824.},
author = {Raut MP, Couto N, Pham TK, Evans C, Noirel J, Wright PC},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0523-0},
pmid = {27247624}
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@article{lin99510,
title = {Roles of three AbrBs in regulating two-phase Clostridium acetobutylicum fermentation.},
author = {Xue Q, Yang Y, Chen J, Chen L, Yang S, Jiang W, Gu Y.},
journal = {Appl Microbiol Biotechnol},
year = {2016},
doi = {10.1007/s00253-016-7638-x},
pmid = {27276910}
}
@article{lin98973,
title = {Anaerobic detoxification of acetic acid in a thermophilic ethanologen.},
author = {Shaw AJ, Miller BB, Rogers SR, Kenealy WR, Meola A, Bhandiwad A, Sillers WR, Shikhare I, Hogsett DA, Herring CD.},
journal = {Biotechnol Biofuels},
year = {2015},
doi = {10.1186/s13068-015-0257-4},
pmid = {27279899}
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@article{lin99281,
title = {Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies.},
author = {Gullert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B, Alawi M, Rattei T, Daniel R, Schmitz RA, Grundhoff A, Streit WR.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0534-x},
pmid = {27279900}
}
@article{lin99506,
title = {Enhanced production of butanol and acetoin by heterologous expression of an acetolactate decarboxylase in Clostridium acetobutylicum.},
author = {Shen X, Liu D, Liu J, Wang Y, Xu J, Yang Z, Guo T, Niu H, Ying H.},
journal = {Bioresour Technol},
year = {2016},
doi = {10.1016/j.biortech.2016.05.121},
pmid = {27285575}
}
@article{lin99035,
title = {Deciphering Clostridium tyrobutyricum Metabolism Based on the Whole-Genome Sequence and Proteome Analyses.},
author = {Lee J, Jang YS, Han MJ, Kim JY, Lee SY.},
journal = {mBio},
year = {2016},
doi = {10.1128/mbio.00743-16},
pmid = {27302759}
}
@article{lin7244,
title = {A quantitative metabolomics study of high sodium response in Clostridium acetobutylicum ATCC 824 acetone-butanol-ethanol (ABE) fermentation.},
author = {Zhao X, Condruz S, Chen J, Jolicoeur M},
journal = {Sci Rep},
year = {2016},
doi = {10.1038/srep28307},
pmid = {27321153}
}
@article{lin98928,
title = {Elucidating the contributions of multiple aldehyde/alcohol dehydrogenases to butanol and ethanol production in Clostridium acetobutylicum.},
author = {Dai Z, Dong H, Zhang Y, Li Y.},
journal = {Sci Rep},
year = {2016},
doi = {10.1038/srep28189},
pmid = {27321949}
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@article{lin99013,
title = {Structural Studies on a Glucosamine/Glucosaminide N-Acetyltransferase.},
author = {Dopkins BJ, Tipton PA, Thoden JB, Holden HM.},
journal = {Biochemistry},
year = {2016},
doi = {10.1021/acs.biochem.6b00536},
pmid = {27348258}
}
@article{lin99174,
title = {Engineering yeast with bifunctional minicellulosome and cellodextrin pathway for co-utilization of cellulose-mixed sugars.},
author = {Fan LH, Zhang ZJ, Mei S, Lu YY, Li M, Wang ZY, Yang JG, Yang ST, Tan TW.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0554-6},
pmid = {27382414}
}
@article{lin99279,
title = {The novel regulatory ncRNA, NfiS, optimizes nitrogen fixation via base pairing with the nitrogenase gene nifK mRNA in Pseudomonas stutzeri A1501.},
author = {Zhan Y, Yan Y, Deng Z, Chen M, Lu W, Lu C, Shang L, Yang Z, Zhang W, Wang W, Li Y, Ke Q, Lu J, Xu Y, Zhang L, Xie Z, Cheng Q, Elmerich C, Lin M.},
journal = {Proc Natl Acad Sci U S A},
year = {2016},
doi = {10.1073/pnas.1604514113},
pmid = {27407147}
}
@article{lin99112,
title = {Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment.},
author = {Dobrijevic D, Abraham AL, Jamet A, Maguin E, van de Guchte M.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0159030},
pmid = {27416027}
}
@article{lin99598,
title = {Effect of ozonolysis parameters on the inhibitory compound generation and on the production of ethanol by Pichia stipitis and acetone-butanol-ethanol by Clostridium from ozonated and water washed sugarcane bagasse.},
author = {Travaini R, Barrado E, Bolado-Rodriguez S.},
journal = {Bioresour Technol},
year = {2016},
doi = {10.1016/j.biortech.2016.07.028},
pmid = {27428302}
}
@article{lin99488,
title = {Enhanced butanol fermentation using metabolically engineered Clostridium acetobutylicum with ex situ recovery of butanol.},
author = {Lee SH, Kim S, Kim JY, Cheong NY, Kim KH.},
journal = {Bioresour Technol},
year = {2016},
doi = {10.1016/j.biortech.2016.07.060},
pmid = {27441828}
}
@article{lin99504,
title = {Intracellular metabolic changes of Clostridium acetobutylicum and promotion to butanol tolerance during biobutanol fermentation.},
author = {Wang YF, Tian J, Ji ZH, Song MY, Li H.},
journal = {Int J Biochem Cell Biol},
year = {2016},
doi = {10.1016/j.biocel.2016.07.031},
pmid = {27477314}
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title = {Kinetic Study of Acetone-Butanol-Ethanol Fermentation in Continuous Culture.},
author = {Buehler EA, Mesbah A.},
journal = {PLoS One},
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title = {Extending CRISPR-Cas9 Technology from Genome Editing to Transcriptional Engineering in the Genus Clostridium.},
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journal = {Appl Environ Microbiol},
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title = {Bioconversion of waste office paper to hydrogen using pretreated rumen fluid inoculum.},
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title = {Carbon 13-Metabolic Flux Analysis derived constraint-based metabolic modelling of Clostridium acetobutylicum in stressed chemostat conditions.},
author = {Wallenius J, Maaheimo H, Eerikainen T.},
journal = {Bioresour Technol},
year = {2016},
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title = {Expanding the molecular toolkit for the homoacetogen Clostridium ljungdahlii.},
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title = {Development of a Rhodobacter capsulatus self-reporting model system for optimizing light-dependent, [FeFe]-hydrogenase-driven H2 production.},
author = {Wecker MS, Beaton SE, Chado RA, Ghirardi ML.},
journal = {Biotechnol Bioeng},
year = {2017},
doi = {10.1002/bit.26076},
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title = {Efficient gene knockdown in Clostridium acetobutylicum by synthetic small regulatory RNAs.},
author = {Cho C, Lee SY.},
journal = {Biotechnol Bioeng},
year = {2017},
doi = {10.1002/bit.26077},
pmid = {27531464}
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title = {Effect of chemical pretreatments on corn stalk bagasse as immobilizing carrier of Clostridium acetobutylicum in the performance of a fermentation-pervaporation coupled system.},
author = {Cai D, Li P, Chen C, Wang Y, Hu S, Cui C, Qin P, Tan T.},
journal = {Bioresour Technol},
year = {2016},
doi = {10.1016/j.biortech.2016.08.049},
pmid = {27566514}
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title = {Identification of a Novel N-Acetylmuramic Acid Transporter in Tannerella forsythia.},
author = {Ruscitto A, Hottmann I, Stafford GP, Schaffer C, Mayer C, Sharma A.},
journal = {J Bacteriol},
year = {2016},
doi = {10.1128/jb.00473-16},
pmid = {27601356}
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title = {Fermentative hydrogen production in an up-flow anaerobic biofilm reactor inoculated with a co-culture of Clostridium acetobutylicum and Desulfovibrio vulgaris.},
author = {Barca C, Ranava D, Bauzan M, Ferrasse JH, Giudici-Orticoni MT, Soric A.},
journal = {Bioresour Technol},
year = {2016},
doi = {10.1016/j.biortech.2016.09.072},
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title = {Cap0037, a Novel Global Regulator of Clostridium acetobutylicum Metabolism.},
author = {Nguyen NP, Linder S, Flitsch SK, Schiel-Bengelsdorf B, Durre P, Soucaille P.},
journal = {mBio},
year = {2016},
doi = {10.1128/mbio.01218-16},
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title = {CaCO3 supplementation alleviates the inhibition of formic acid on acetone/butanol/ethanol fermentation by Clostridium acetobutylicum.},
author = {Qi G, Xiong L, Lin X, Huang C, Li H, Chen X, Chen X.},
journal = {Biotechnol Lett},
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title = {Comprehensive investigations of biobutanol production by a non-acetone and 1,3-propanediol generating Clostridium strain from glycerol and polysaccharides.},
author = {Xin F, Wang C, Dong W, Zhang W, Wu H, Ma J, Jiang M.},
journal = {Biotechnol Biofuels},
year = {2016},
doi = {10.1186/s13068-016-0641-8},
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title = {Recombinant antibodies for specific detection of clostridial [Fe-Fe] hydrogenases.},
author = {Mangayil R, Karp M, Lamminmaki U, Santala V.},
journal = {Sci Rep},
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title = {Effective isopropanol-butanol (IB) fermentation with high butanol content using a newly isolated Clostridium sp. A1424.},
author = {Youn SH, Lee KM, Kim KY, Lee SM, Woo HM, Um Y.},
journal = {Biotechnol Biofuels},
year = {2016},
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title = {Metabolic engineering of Methanosarcina acetivorans for lactate production from methane.},
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journal = {Biotechnol Bioeng},
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title = {Hydrogen production from starch by co-culture of Clostridium acetobutylicum and Rhodobacter sphaeroides in one step hybrid dark- and photofermentation in repeated fed-batch reactor.},
author = {Zagrodnik R, Laniecki M.},
journal = {Bioresour Technol},
year = {2017},
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pmid = {27810246}
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title = {Development of a High-Efficiency Transformation Method and Implementation of Rational Metabolic Engineering for the Industrial Butanol Hyperproducer Clostridium saccharoperbutylacetonicum Strain N1-4.},
author = {Herman NA, Li J, Bedi R, Turchi B, Liu X, Miller MJ, Zhang W.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.02942-16},
pmid = {27836845}
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title = {Hyper-thermal acid hydrolysis and adsorption treatment of red seaweed, Gelidium amansii for butyric acid production with pH control.},
author = {Ra CH, Jeong GT, Kim SK},
journal = {Bioprocess Biosyst Eng},
year = {2016},
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title = {Metabolite labelling reveals hierarchies in Clostridium acetobutylicum that selectively channel carbons from sugar mixtures towards biofuel precursors.},
author = {Aristilde L.},
journal = {Microb Biotechnol},
year = {2017},
doi = {10.1111/1751-7915.12459},
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title = {Evolutionary Adaptation of the Essential tRNA Methyltransferase TrmD to the Signaling Molecule 3',5'-cAMP in Bacteria.},
author = {Zhang Y, Agrebi R, Bellows LE, Collet JF, Kaever V, Grundling A.},
journal = {J Biol Chem},
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title = {Variability in DPA and Calcium Content in the Spores of Clostridium Species.},
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journal = {Front Microbiol},
year = {2016},
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@article{lin99554,
title = {Clostridium guangxiense sp. nov. and Clostridium neuense sp. nov., two phylogenetically closely related hydrogen-producing species isolated from lake sediment.},
author = {Zhao X, Li D, Xu S, Guo Z, Zhang Y, Man L, Jiang B, Hu X.},
journal = {Int J Syst Evol Microbiol},
year = {2017},
doi = {10.1099/ijsem.0.001702},
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title = {Genome analysis of a hyper acetone-butanol-ethanol (ABE) producing Clostridium acetobutylicum BKM19.},
author = {Cho C, Choe D, Jang YS, Kim KJ, Kim WJ, Cho BK, Papoutsakis ET, Bennett GN, Seung DY, Lee SY},
journal = {Biotechnol J},
year = {2017},
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title = {Synthetic spike-in standards for high-throughput 16S rRNA gene amplicon sequencing.},
author = {Tourlousse DM, Yoshiike S, Ohashi A, Matsukura S, Noda N, Sekiguchi Y.},
journal = {Nucleic Acids Res},
year = {2017},
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title = {Kinetic Isotope Effects and Hydrogen/Deuterium Exchange Reveal Large Conformational Changes During the Catalysis of the Clostridium acetobutylicum Spore Photoproduct Lyase.},
author = {Yang L, Adhikari J, Gross ML, Li L.},
journal = {Photochem Photobiol},
year = {2017},
doi = {10.1111/php.12697},
pmid = {27992649}
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title = {Simplifying multidimensional fermentation dataset analysis and visualization: One step closer to capturing high-quality mutant strains.},
author = {Zhou X, Xu D, Jiang TT.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/srep39875},
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@article{lin99116,
title = {Production of (R)-3-hydroxybutyric acid by Arxula adeninivorans.},
author = {Biernacki M, Riechen J, Hahnel U, Roick T, Baronian K, Bode R, Kunze G.},
journal = {AMB Express},
year = {2017},
doi = {10.1186/s13568-016-0303-z},
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title = {Retargeting a Dual-Acting sRNA for Multiple mRNA Transcript Regulation.},
author = {Lahiry A, Stimple SD, Wood DW, Lease RA.},
journal = {ACS Synth Biol},
year = {2017},
doi = {10.1021/acssynbio.6b00261},
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title = {Expression and Characterization of Levansucrase from Clostridium acetobutylicum.},
author = {Gao S, Qi X, Qi X, Hart DJ, Gao H, An Y.},
journal = {J Agric Food Chem},
year = {2017},
doi = {10.1021/acs.jafc.6b05165},
pmid = {28075130}
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title = {Ancient bacteria of the Ötzi's microbiome: a genomic tale from the Copper Age.},
author = {Lugli GA, Milani C, Mancabelli L, Turroni F, Ferrario C, Duranti S, van Sinderen D, Ventura M.},
journal = {Microbiome},
year = {2017},
doi = {10.1186/s40168-016-0221-y},
pmid = {28095919}
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title = {Immobilization of Clostridium acetobutylicum onto natural textiles and its fermentation properties.},
author = {Zhuang W, Liu X, Yang J, Wu J, Zhou J, Chen Y, Liu D, Ying H.},
journal = {Microb Biotechnol},
year = {2017},
doi = {10.1111/1751-7915.12557},
pmid = {28112488}
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title = {Modulation of the Acetone/Butanol Ratio during Fermentation of Corn Stover-Derived Hydrolysate by Clostridium beijerinckii Strain NCIMB 8052.},
author = {Liu ZY, Yao XQ, Zhang Q, Liu Z, Wang ZJ, Zhang YY, Li FL.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.03386-16},
pmid = {28130305}
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title = {Metabolic flexibility of a butyrate pathway mutant of Clostridium acetobutylicum.},
author = {Yoo M, Croux C, Meynial-Salles I, Soucaille P.},
journal = {Metab Eng},
year = {2017},
doi = {10.1016/j.ymben.2017.01.011},
pmid = {28159643}
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title = {Recent advances and state-of-the-art strategies in strain and process engineering for biobutanol production by Clostridium acetobutylicum.},
author = {Xue C, Zhao J, Chen L, Yang ST, Bai F.},
journal = {Biotechnol Adv},
year = {2017},
doi = {10.1016/j.biotechadv.2017.01.007},
pmid = {28163194}
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title = {Applied in situ product recovery in ABE fermentation.},
author = {Outram V, Lalander CA, Lee JGM, Davies ET, Harvey AP.},
journal = {Biotechnol Prog},
year = {2017},
doi = {10.1002/btpr.2446},
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title = {Sigma Factor Regulated Cellular Response in a Non-solvent Producing Clostridium beijerinckii Degenerated Strain: A Comparative Transcriptome Analysis.},
author = {Zhang Y, Jiao S, Lv J, Du R, Yan X, Wan C, Zhang R, Han B.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.00023},
pmid = {28194137}
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title = {Mathematical modelling of clostridial acetone-butanol-ethanol fermentation.},
author = {Millat T, Winzer K.},
journal = {Appl Microbiol Biotechnol},
year = {2017},
doi = {10.1007/s00253-017-8137-4},
pmid = {28210797}
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title = {Metabolite labelling as a tool to define hierarchies in Clostridium acetobutylicum sugar usage and its relevance for biofuel production.},
author = {Hidalgo M, Puerta-Fernandez E.},
journal = {Microb Biotechnol},
year = {2017},
doi = {10.1111/1751-7915.12696},
pmid = {28220690}
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@article{lin99566,
title = {Metabolic engineering of Clostridium tyrobutyricum for n-butanol production from sugarcane juice.},
author = {Zhang J, Yu L, Xu M, Yang ST, Yan Q, Lin M, Tang IC.},
journal = {Appl Microbiol Biotechnol},
year = {2017},
doi = {10.1007/s00253-017-8200-1},
pmid = {28238080}
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title = {Synergistic dark and photo-fermentation continuous system for hydrogen production from molasses by Clostridium acetobutylicum ATCC 824 and Rhodobacter capsulatus DSM 1710.},
author = {Morsy FM},
journal = {J Photochem Photobiol B},
year = {2017},
doi = {10.1016/j.jphotobiol.2017.02.011},
pmid = {28242562}
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title = {Genome Editing in Clostridium saccharoperbutylacetonicum N1-4 with the CRISPR-Cas9 System.},
author = {Wang S, Dong S, Wang P, Tao Y, Wang Y.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.00233-17},
pmid = {28258147}
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title = {Model-based quantification of metabolic interactions from dynamic microbial-community data.},
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journal = {PLoS One},
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title = {Microbial solvent formation revisited by comparative genome analysis.},
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journal = {Biotechnol Biofuels},
year = {2017},
doi = {10.1186/s13068-017-0742-z},
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journal = {3 Biotech},
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title = {Genetic improvement of n-butanol tolerance in Escherichia coli by heterologous overexpression of groESL operon from Clostridium acetobutylicum.},
author = {Abdelaal AS, Ageez AM, Abd El-Hadi AE, Abdallah NA.},
journal = {3 Biotech},
year = {2015},
doi = {10.1007/s13205-014-0235-8},
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title = {Decolorization and biodegradation of remazol reactive dyes by Clostridium species.},
author = {Ekambaram SP, Perumal SS, Annamalai U.},
journal = {3 Biotech},
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title = {Bacterial xylanases: biology to biotechnology.},
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journal = {3 Biotech},
year = {2016},
doi = {10.1007/s13205-016-0457-z},
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title = {High-efficient n-butanol production by co-culturing Clostridium acetobutylicum and Saccharomyces cerevisiae integrated with butyrate fermentative supernatant addition.},
author = {Luo H, Zeng Q, Han S, Wang Z, Dong Q, Bi Y, Zhao Y.},
journal = {World J Microbiol Biotechnol},
year = {2017},
doi = {10.1007/s11274-017-2246-1},
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title = {n-Butanol derived from biochemical and chemical routes: A review.},
author = {Ndaba B, Chiyanzu I, Marx S.},
journal = {Biotechnol Rep (Amst)},
year = {2015},
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title = {Improving cellular robustness and butanol titers of Clostridium acetobutylicum ATCC824 by introducing heat shock proteins from an extremophilic bacterium.},
author = {Liao Z, Zhang Y, Luo S, Suo Y, Zhang S, Wang J},
journal = {J Biotechnol},
year = {2017},
doi = {10.1016/j.jbiotec.2017.04.031},
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title = {Biosynthesis of the fatty acid isopropyl esters by engineered Escherichia coli.},
author = {Pan H, Zhang L, Li X, Guo D.},
journal = {Enzyme Microb Technol},
year = {2017},
doi = {10.1016/j.enzmictec.2017.03.012},
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title = {New Insight into Sugarcane Industry Waste Utilization (Press Mud) for Cleaner Biobutanol Production by Using C. acetobutylicum NRRL B-527.},
author = {Nimbalkar PR, Khedkar MA, Gaikwad SG, Chavan PV, Bankar SB},
journal = {Appl Biochem Biotechnol},
year = {2017},
doi = {10.1007/s12010-017-2479-3},
pmid = {28474218}
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@article{lin99490,
title = {Enzymatic synthesis and semi-preparative isolation of N-acetylmuramic acid 6-phosphate.},
author = {Unsleber S, Borisova M, Mayer C.},
journal = {Carbohydr Res},
year = {2017},
doi = {10.1016/j.carres.2017.04.005},
pmid = {28505548}
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@article{lin99183,
title = {Clostridium butyricum maximizes growth while minimizing enzyme usage and ATP production: metabolic flux distribution of a strain cultured in glycerol.},
author = {Serrano-Bermudez LM, Gonzalez Barrios AF, Maranas CD, Montoya D.},
journal = {BMC Syst Biol},
year = {2017},
doi = {10.1186/s12918-017-0434-0},
pmid = {28571567}
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title = {A two-plasmid inducible CRISPR/Cas9 genome editing tool for Clostridium acetobutylicum.},
author = {Wasels F, Jean-Marie J, Collas F, Lopez-Contreras AM, Lopes Ferreira N},
journal = {J Microbiol Methods},
year = {2017},
doi = {10.1016/j.mimet.2017.06.010},
pmid = {28610973}
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@article{lin98954,
title = {Heterologous Expression of the Clostridium carboxidivorans CO Dehydrogenase Alone or Together with the Acetyl Coenzyme A Synthase Enables both Reduction of CO2 and Oxidation of CO by Clostridium acetobutylicum.},
author = {Carlson ED, Papoutsakis ET.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.00829-17},
pmid = {28625981}
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@article{lin99161,
title = {Engineering redox homeostasis to develop efficient alcohol-producing microbial cell factories.},
author = {Zhao C, Zhao Q, Li Y, Zhang Y.},
journal = {Microb Cell Fact},
year = {2017},
doi = {10.1186/s12934-017-0728-3},
pmid = {28646866}
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@article{lin99880,
title = {Enhanced n-butanol production by Clostridium beijerinckii MCMB 581 in presence of selected surfactant.},
author = {Singh K, Gedam PS, Raut AN, Dhamole PB, Dhakephalkar PK, Ranade DR.},
journal = {3 Biotech},
year = {2017},
doi = {10.1007/s13205-017-0803-9},
pmid = {28660448}
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title = {Cauliflower waste utilization for sustainable biobutanol production: revelation of drying kinetics and bioprocess development.},
author = {Khedkar MA, Nimbalkar PR, Chavan PV, Chendake YJ, Bankar SB.},
journal = {Bioprocess Biosyst Eng},
year = {2017},
doi = {10.1007/s00449-017-1806-y},
pmid = {28674730}
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@article{lin7235,
title = {Metabolic engineering of Rhodopseudomonas palustris for the obligate reduction of n-butyrate to n-butanol.},
author = {Doud DFR, Holmes EC, Richter H, Molitor B, Jander G, Angenent LT},
journal = {Biotechnol Biofuels},
year = {2017},
doi = {10.1186/s13068-017-0864-3},
pmid = {28702083}
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title = {Hydrogen from algal biomass: A review of production process.},
author = {Sharma A, Arya SK.},
journal = {Biotechnol Rep (Amst)},
year = {2017},
doi = {10.1016/j.btre.2017.06.001},
pmid = {28702371}
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@article{lin99467,
title = {Improving Fructose Utilization and Butanol Production by Clostridium acetobutylicum via Extracellular Redox Potential Regulation and Intracellular Metabolite Analysis.},
author = {Chen LJ, Wu YD, Xue C, Bai FW.},
journal = {Biotechnol J},
year = {2017},
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title = {Common and phylogenetically widespread coding for peptides by bacterial small RNAs.},
author = {Friedman RC, Kalkhof S, Doppelt-Azeroual O, Mueller SA, Chovancova M, von Bergen M, Schwikowski B.},
journal = {BMC Genomics},
year = {2017},
doi = {10.1186/s12864-017-3932-y},
pmid = {28732463}
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@article{lin99550,
title = {Metabolic engineering of isopropyl alcohol-producing Escherichia coli strains with 13 C-metabolic flux analysis.},
author = {Okahashi N, Matsuda F, Yoshikawa K, Shirai T, Matsumoto Y, Wada M, Shimizu H.},
journal = {Biotechnol Bioeng},
year = {2017},
doi = {10.1002/bit.26390},
pmid = {28755490}
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@article{lin99879,
title = {Engineering Shewanella oneidensis enables xylose-fed microbial fuel cell.},
author = {Li F, Li Y, Sun L, Li X, Yin C, An X, Chen X, Tian Y, Song H.},
journal = {Biotechnol Biofuels},
year = {2017},
doi = {10.1186/s13068-017-0881-2},
pmid = {28804512}
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@article{lin99172,
title = {Enhancement of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) accumulation in Arxula adeninivorans by stabilization of production.},
author = {Biernacki M, Marzec M, Roick T, Patz R, Baronian K, Bode R, Kunze G.},
journal = {Microb Cell Fact},
year = {2017},
doi = {10.1186/s12934-017-0751-4},
pmid = {28818103}
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@article{lin99496,
title = {Roles of the F-domain in [FeFe] hydrogenase.},
author = {Gauquelin C, Baffert C, Richaud P, Kamionka E, Etienne E, Guieysse D, Girbal L, Fourmond V, Andre I, Guigliarelli B, Leger C, Soucaille P, Meynial-Salles I.},
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year = {2018},
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title = {Activation Thermodynamics and H/D Kinetic Isotope Effect of the Hox to HredH+ Transition in [FeFe] Hydrogenase.},
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title = {A dynamic metabolic flux analysis of ABE (acetone-butanol-ethanol) fermentation by Clostridium acetobutylicum ATCC 824, with riboflavin as a by-product.},
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title = {High-efficiency bioconversion of kitchen garbage to biobutanol using an enzymatic cocktail procedure.},
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journal = {Bioresour Technol},
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title = {Rebalancing Redox to Improve Biobutanol Production by Clostridium tyrobutyricum.},
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@article{lin7233,
title = {Comparative genomic analysis of Clostridium acetobutylicum for understanding the mutations contributing to enhanced butanol tolerance and production.},
author = {Xu M, Zhao J, Yu L, Yang ST},
journal = {J Biotechnol},
year = {2017},
doi = {10.1016/j.jbiotec.2017.10.010},
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@article{lin99155,
title = {Production of 3-hydroxypropionic acid in engineered Methylobacterium extorquens AM1 and its reassimilation through a reductive route.},
author = {Yang YM, Chen WJ, Yang J, Zhou YM, Hu B, Zhang M, Zhu LP, Wang GY, Yang S.},
journal = {Microb Cell Fact},
year = {2017},
doi = {10.1186/s12934-017-0798-2},
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@article{lin99077,
title = {Mass spectrometric revival of an l-rhamnose- and d-galactose-specific lectin from a lost strain of Streptomyces.},
author = {Fujita-Yamaguchi Y, Bagramyan K, Yamaguchi Y, Ikeda A, Dohmae N, Hong TB, Kalkum M.},
journal = {J Biol Chem},
year = {2018},
doi = {10.1074/jbc.m117.812719},
pmid = {29101228}
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@article{lin99053,
title = {Expression of Genes for a Flavin Adenine Dinucleotide-Binding Oxidoreductase and a Methyltransferase from Mycobacterium chlorophenolicum Is Necessary for Biosynthesis of 10-Methyl Stearic Acid from Oleic Acid in Escherichia coli.},
author = {Machida S, Bakku RK, Suzuki I.},
journal = {Front Microbiol},
year = {2017},
doi = {10.3389/fmicb.2017.02061},
pmid = {29109716}
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@article{lin98899,
title = {The industrial anaerobe Clostridium acetobutylicum uses polyketides to regulate cellular differentiation.},
author = {Herman NA, Kim SJ, Li JS, Cai W, Koshino H, Zhang W.},
journal = {Nat Commun},
year = {2017},
doi = {10.1038/s41467-017-01809-5},
pmid = {29138399}
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@article{lin99485,
title = {Novel polycondensed biopolyamide generated from biomass-derived 4-aminohydrocinnamic acid.},
author = {Kawasaki Y, Aniruddha N, Minakawa H, Masuo S, Kaneko T, Takaya N.},
journal = {Appl Microbiol Biotechnol},
year = {2018},
doi = {10.1007/s00253-017-8617-6},
pmid = {29150705}
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@article{lin99076,
title = {Amino acid catabolism-directed biofuel production in Clostridium sticklandii: An insight into model-driven systems engineering.},
author = {Sangavai C, Chellapandi P.},
journal = {Biotechnol Rep (Amst)},
year = {2017},
doi = {10.1016/j.btre.2017.11.002},
pmid = {29167757}
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@article{lin99926,
title = {Structure of the Bacillus anthracis dTDP-L-rhamnose-biosynthetic enzyme dTDP-4-dehydrorhamnose reductase (RfbD).},
author = {Law A, Stergioulis A, Halavaty AS, Minasov G, Anderson WF, Kuhn ML.},
journal = {Acta Crystallogr F Struct Biol Commun},
year = {2017},
doi = {10.1107/s2053230x17015746},
pmid = {29199984}
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@article{lin99752,
title = {Renewable synthesis of n-butyraldehyde from glucose by engineered Escherichia coli.},
author = {Ku JT, Simanjuntak W, Lan EI.},
journal = {Biotechnol Biofuels},
year = {2017},
doi = {10.1186/s13068-017-0978-7},
pmid = {29213330}
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@article{lin99994,
title = {Identification of Bacterial Species That Can Utilize Fructose-Asparagine.},
author = {Sabag-Daigle A, Wu J, Borton MA, Sengupta A, Gopalan V, Wrighton KC, Wysocki VH, Ahmer BMM.},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/aem.01957-17},
pmid = {29269489}
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@article{lin99465,
title = {Stringency of Synthetic Promoter Sequences in Clostridium Revealed and Circumvented by Tuning Promoter Library Mutation Rates.},
author = {Mordaka PM, Heap JT.},
journal = {ACS Synth Biol},
year = {2018},
doi = {10.1021/acssynbio.7b00398},
pmid = {29320851}
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@article{lin98909,
title = {Functional Expression of the Clostridium ljungdahlii Acetyl-Coenzyme A Synthase in Clostridium acetobutylicum as Demonstrated by a Novel In Vivo CO Exchange Activity En Route to Heterologous Installation of a Functional Wood-Ljungdahl Pathway.},
author = {Fast AG, Papoutsakis ET.},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/aem.02307-17},
pmid = {29374033}
}
@article{lin98903,
title = {Enhanced isopropanol-butanol-ethanol mixture production through manipulation of intracellular NAD(P)H level in the recombinant Clostridium acetobutylicum XY16.},
author = {Wang C, Xin F, Kong X, Zhao J, Dong W, Zhang W, Ma J, Wu H, Jiang M.},
journal = {Biotechnol Biofuels},
year = {2018},
doi = {10.1186/s13068-018-1024-0},
pmid = {29410706}
}
@article{lin99472,
title = {Acetone-Butanol-Ethanol Production from Waste Seaweed Collected from Gwangalli Beach, Busan, Korea, Based on pH-Controlled and Sequential Fermentation Using Two Strains.},
author = {Sunwoo IY, Hau NT, Ra CH, Jeong GT, Kim SK.},
journal = {Appl Biochem Biotechnol},
year = {2018},
doi = {10.1007/s12010-018-2711-9},
pmid = {29423868}
}
@article{lin98886,
title = {A Novel Dual-cre Motif Enables Two-Way Autoregulation of CcpA in Clostridium acetobutylicum.},
author = {Zhang L, Liu Y, Yang Y, Jiang W, Gu Y.},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/aem.00114-18},
pmid = {29427432}
}
@article{lin98987,
title = {Genomic comparison of Clostridium species with the potential of utilizing red algal biomass for biobutanol production.},
author = {Sun C, Zhang S, Xin F, Shanmugam S, Wu YR.},
journal = {Biotechnol Biofuels},
year = {2018},
doi = {10.1186/s13068-018-1044-9},
pmid = {29467820}
}
@article{lin99727,
title = {Impact of pH and butyric acid on butanol production during batch fermentation using a new local isolate of Clostridium acetobutylicum YM1.},
author = {Al-Shorgani NKN, Kalil MS, Yusoff WMW, Hamid AA.},
journal = {Saudi J Biol Sci},
year = {2018},
doi = {10.1016/j.sjbs.2017.03.020},
pmid = {29472788}
}
@article{lin99922,
title = {Riboswitch regulation in cyanobacteria is independent of their habitat adaptations.},
author = {Singh P, Kumar N, Jethva M, Yadav S, Kumari P, Thakur A, Kushwaha HR.},
journal = {Physiol Mol Biol Plants},
year = {2018},
doi = {10.1007/s12298-018-0504-9},
pmid = {29515325}
}
@article{lin99774,
title = {Protein Acetylation and Butyrylation Regulate the Phenotype and Metabolic Shifts of the Endospore-forming Clostridium acetobutylicum.},
author = {Xu JY, Xu Z, Liu X, Tan M, Ye BC.},
journal = {Mol Cell Proteomics},
year = {2018},
doi = {10.1074/mcp.ra117.000372},
pmid = {29523768}
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@article{lin99474,
title = {Towards acetone-uncoupled biofuels production in solventogenic Clostridium through reducing power conservation.},
author = {Liu D, Yang Z, Wang P, Niu H, Zhuang W, Chen Y, Wu J, Zhu C, Ying H, Ouyang P.},
journal = {Metab Eng},
year = {2018},
doi = {10.1016/j.ymben.2018.03.012},
pmid = {29550396}
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@article{lin98964,
title = {Genome and transcriptome of the natural isopropanol producer Clostridium beijerinckii DSM6423.},
author = {Mate de Gerando H, Wasels F, Bisson A, Clement B, Bidard F, Jourdier E, Lopez-Contreras AM, Lopes Ferreira N.},
journal = {BMC Genomics},
year = {2018},
doi = {10.1186/s12864-018-4636-7},
pmid = {29636009}
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@article{lin99462,
title = {Phototrophic hydrogen production from a clostridial [FeFe] hydrogenase expressed in the heterocysts of the cyanobacterium Nostoc PCC 7120.},
author = {Avilan L, Roumezi B, Risoul V, Bernard CS, Kpebe A, Belhadjhassine M, Rousset M, Brugna M, Latifi A.},
journal = {Appl Microbiol Biotechnol},
year = {2018},
doi = {10.1007/s00253-018-8989-2},
pmid = {29691627}
}
@article{lin99038,
title = {Structural basis of product inhibition by arabinose and xylose of the thermostable GH43 beta-1,4-xylosidase from Geobacillus thermoleovorans IT-08.},
author = {Rohman A, van Oosterwijk N, Puspaningsih NNT, Dijkstra BW.},
journal = {PLoS One},
year = {2018},
doi = {10.1371/journal.pone.0196358},
pmid = {29698436}
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@article{lin98888,
title = {Small and Low but Potent: the Complex Regulatory Role of the Small RNA SolB in Solventogenesis in Clostridium acetobutylicum.},
author = {Jones AJ, Fast AG, Clupper M, Papoutsakis ET.},
journal = {Appl Environ Microbiol},
year = {2018},
doi = {10.1128/aem.00597-18},
pmid = {29728392}
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@article{lin98998,
title = {Unique genetic cassettes in a Thermoanaerobacterium contribute to simultaneous conversion of cellulose and monosugars into butanol.},
author = {Li T, Zhang C, Yang KL, He J.},
journal = {Sci Adv},
year = {2018},
doi = {10.1126/sciadv.1701475},
pmid = {29740597}
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@article{lin99126,
title = {Integrated in situ gas stripping-salting-out process for high-titer acetone-butanol-ethanol production from sweet sorghum bagasse.},
author = {Wen H, Chen H, Cai D, Gong P, Zhang T, Wu Z, Gao H, Li Z, Qin P, Tan T.},
journal = {Biotechnol Biofuels},
year = {2018},
doi = {10.1186/s13068-018-1137-5},
pmid = {29760776}
}
@article{lin7232,
title = {Diauxic growth of Clostridium acetobutylicum ATCC 824 when grown on mixtures of glucose and cellobiose.},
author = {Buendia-Kandia F, Rondags E, Framboisier X, Mauviel G, Dufour A, Guedon E},
journal = {AMB Express},
year = {2018},
doi = {10.1186/s13568-018-0615-2},
pmid = {29789978}
}
@article{lin99478,
title = {CO-Bridged H-Cluster Intermediates in the Catalytic Mechanism of [FeFe]-Hydrogenase CaI.},
author = {Ratzloff MW, Artz JH, Mulder DW, Collins RT, Furtak TE, King PW.},
journal = {J Am Chem Soc},
year = {2018},
doi = {10.1021/jacs.8b03072},
pmid = {29792026}
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@article{lin99982,
title = {Increasing of activity and thermostability of cold active butanol-tolerant endoglucanase from a marine Rhodococcus sp. under high concentrations of butanol condition.},
author = {Zeng X, Xue D.},
journal = {3 Biotech},
year = {2018},
doi = {10.1007/s13205-018-1249-4},
pmid = {29868303}
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@article{lin99469,
title = {Biosynthesis of adipic acid via microaerobic hydrogenation of cis,cis-muconic acid by oxygen-sensitive enoate reductase.},
author = {Sun J, Raza M, Sun X, Yuan Q.},
journal = {J Biotechnol},
year = {2018},
doi = {10.1016/j.jbiotec.2018.06.304},
pmid = {29885337}
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@article{lin99625,
title = {Alginate Adsorbent Immobilization Technique Promotes Biobutanol Production by Clostridium acetobutylicum Under Extreme Condition of High Concentration of Organic Solvent.},
author = {Ye Z, Song J, Zhu E, Song X, Chen X, Hong X.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01071},
pmid = {29910776}
}
@article{lin99470,
title = {Improvement of butanol production by the development and co-culture of C. acetobutylicum TSH1 and B. cereus TSH2.},
author = {Mi S, Gu C, Wu P, Liu H, Yan X, Li D, Tang X, Duan X, Wang G, Zhang J.},
journal = {Appl Microbiol Biotechnol},
year = {2018},
doi = {10.1007/s00253-018-9151-x},
pmid = {29915958}
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@article{lin99894,
title = {Development of a High-Throughput, In Vivo Selection Platform for NADPH-Dependent Reactions Based on Redox Balance Principles.},
author = {Zhang L, King E, Luo R, Li H.},
journal = {ACS Synth Biol},
year = {2018},
doi = {10.1021/acssynbio.8b00179},
pmid = {29939709}
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@article{lin7231,
title = {Improving the fermentation performance of Clostridium acetobutylicum ATCC 824 by strengthening the VB1 biosynthesis pathway.},
author = {Liao Z, Suo Y, Xue C, Fu H, Wang J},
journal = {Appl Microbiol Biotechnol},
year = {2018},
doi = {10.1007/s00253-018-9208-x},
pmid = {29987383}
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@article{lin99058,
title = {Leaderless mRNAs in the Spotlight: Ancient but Not Outdated!},
author = {Beck HJ, Moll I.},
journal = {Microbiol Spectr},
year = {2018},
doi = {10.1128/microbiolspec.rwr-0016-2017},
pmid = {30006995}
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@article{lin99446,
title = {Dual function of ammonium acetate in acetone-butanol-ethanol fermentation by Clostridium acetobutylicum.},
author = {Li S, Zhou Y, Luo Z, Cui Y, Xu Y, Lin L, Zhao M, Guo Y, Pang Z.},
journal = {Bioresour Technol},
year = {2018},
doi = {10.1016/j.biortech.2018.07.055},
pmid = {30029177}
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@article{lin7230,
title = {Metabolic engineering of Clostridium acetobutylicum for the production of butyl butyrate.},
author = {Noh HJ, Woo JE, Lee SY, Jang YS},
journal = {Appl Microbiol Biotechnol},
year = {2018},
doi = {10.1007/s00253-018-9267-z},
pmid = {30076425}
}
@article{lin7229,
title = {Optimisation of Simultaneous Saccharification and Fermentation (SSF) for Biobutanol Production Using Pretreated Oil Palm Empty Fruit Bunch.},
author = {Md Razali NAA, Ibrahim MF, Kamal Bahrin E, Abd-Aziz S},
journal = {Molecules},
year = {2018},
doi = {10.3390/molecules23081944},
pmid = {30081514}
}
@article{lin99204,
title = {A metagenomic analysis of the camel rumen's microbiome identifies the major microbes responsible for lignocellulose degradation and fermentation.},
author = {Gharechahi J, Salekdeh GH.},
journal = {Biotechnol Biofuels},
year = {2018},
doi = {10.1186/s13068-018-1214-9},
pmid = {30083229}
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@article{lin99110,
title = {The Rnf Complex Is an Energy-Coupled Transhydrogenase Essential To Reversibly Link Cellular NADH and Ferredoxin Pools in the Acetogen Acetobacterium woodii.},
author = {Westphal L, Wiechmann A, Baker J, Minton NP, Muller V.},
journal = {J Bacteriol},
year = {2018},
doi = {10.1128/jb.00357-18},
pmid = {30126940}
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@article{lin99438,
title = {Improvement of butanol production in Clostridium acetobutylicum through enhancement of NAD(P)H availability.},
author = {Qi F, Thakker C, Zhu F, Pena M, San KY, Bennett GN.},
journal = {J Ind Microbiol Biotechnol},
year = {2018},
doi = {10.1007/s10295-018-2068-7},
pmid = {30141107}
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@article{lin98931,
title = {A synthetic enzymatic pathway for extremely thermophilic acetone production based on the unexpectedly thermostable acetoacetate decarboxylase from Clostridium acetobutylicum.},
author = {Zeldes BM, Straub CT, Otten JK, Adams MWW, Kelly RM.},
journal = {Biotechnol Bioeng},
year = {2018},
doi = {10.1002/bit.26829},
pmid = {30199090}
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@article{lin99728,
title = {Reviving the Weizmann process for commercial n-butanol production.},
author = {Nguyen NP, Raynaud C, Meynial-Salles I, Soucaille P.},
journal = {Nat Commun},
year = {2018},
doi = {10.1038/s41467-018-05661-z},
pmid = {30206218}
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@article{lin98991,
title = {Flexibility and constraint: Evolutionary remodeling of the sporulation initiation pathway in Firmicutes.},
author = {Davidson P, Eutsey R, Redler B, Hiller NL, Laub MT, Durand D.},
journal = {PLoS Genet},
year = {2018},
doi = {10.1371/journal.pgen.1007470},
pmid = {30212463}
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@article{lin99441,
title = {Simultaneous organosolv pretreatment and detoxification of municipal solid waste for efficient biobutanol production.},
author = {Farmanbordar S, Amiri H, Karimi K.},
journal = {Bioresour Technol},
year = {2018},
doi = {10.1016/j.biortech.2018.09.017},
pmid = {30219575}
}
@article{lin99838,
title = {The draft genome sequence of Clostridium sp. strain LJ4 with high furan and phenolic derivates' tolerances occurring from lignocellulosic hydrolysates.},
author = {Liu J, Jiang Y, Chen T, Dong W, Zhang W, Ma J, Jiang M, Xin F.},
journal = {3 Biotech},
year = {2018},
doi = {10.1007/s13205-018-1430-9},
pmid = {30237953}
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@article{lin98911,
title = {Role of Trace Elements as Cofactor: An Efficient Strategy toward Enhanced Biobutanol Production.},
author = {Nimbalkar PR, Khedkar MA, Parulekar RS, Chandgude VK, Sonawane KD, Chavan PV, Bankar SB.},
journal = {ACS Sustain Chem Eng},
year = {2018},
doi = {10.1021/acssuschemeng.8b01611},
pmid = {30271690}
}
@article{lin7228,
title = {Arabinose-Induced Catabolite Repression as a Mechanism for Pentose Hierarchy Control in Clostridium acetobutylicum ATCC 824.},
author = {Servinsky MD, Renberg RL, Perisin MA, Gerlach ES, Liu S, Sund CJ},
journal = {mSystems},
year = {2018},
doi = {10.1128/mSystems.00064-18},
pmid = {30374459}
}
@article{lin98907,
title = {Crystal structure and kinetic analyses of a hexameric form of (S)-3-hydroxybutyryl-CoA dehydrogenase from Clostridium acetobutylicum.},
author = {Takenoya M, Taguchi S, Yajima S.},
journal = {Acta Crystallogr F Struct Biol Commun},
year = {2018},
doi = {10.1107/s2053230x18014814},
pmid = {30387779}
}
@article{lin99463,
title = {Direct cell-to-cell exchange of matter in a synthetic Clostridium syntrophy enables CO2 fixation, superior metabolite yields, and an expanded metabolic space.},
author = {Charubin K, Papoutsakis ET.},
journal = {Metab Eng},
year = {2019},
doi = {10.1016/j.ymben.2018.10.006},
pmid = {30391511}
}
@article{lin7227,
title = {The significance of proline on lignocellulose-derived inhibitors tolerance in Clostridium acetobutylicum ATCC 824.},
author = {Liao Z, Guo X, Hu J, Suo Y, Fu H, Wang J},
journal = {Bioresour Technol},
year = {2018},
doi = {10.1016/j.biortech.2018.10.038},
pmid = {30396113}
}
@article{lin7226,
title = {Combining chemical flocculation and bacterial co-culture of Cupriavidus taiwanensis and Ureibacillus thermosphaericus to detoxify a hardwood hemicelluloses hydrolysate and enable acetone-butanol-ethanol fermentation leading to butanol.},
author = {Theiri M, Chadjaa H, Marinova M, Jolicoeur M},
journal = {Biotechnol Prog},
year = {2018},
doi = {10.1002/btpr.2753},
pmid = {30468318}
}
@article{lin99437,
title = {Acetone, butanol, and ethanol production from the green seaweed Enteromorpha intestinalis via the separate hydrolysis and fermentation.},
author = {Nguyen TH, Sunwoo IY, Ra CH, Jeong GT, Kim SK.},
journal = {Bioprocess Biosyst Eng},
year = {2019},
doi = {10.1007/s00449-018-2045-6},
pmid = {30470908}
}
@article{lin99663,
title = {Clostridium acetobutylicum grows vegetatively in a biofilm rich in heteropolysaccharides and cytoplasmic proteins.},
author = {Liu D, Yang Z, Chen Y, Zhuang W, Niu H, Wu J, Ying H.},
journal = {Biotechnol Biofuels},
year = {2018},
doi = {10.1186/s13068-018-1316-4},
pmid = {30479660}
}
@article{lin99453,
title = {N-acetyltransferases from three different organisms displaying distinct selectivity toward hexosamines and N-terminal amine of peptides.},
author = {Zhang P, Liu P, Xu Y, Liang Y, Wang PG, Cheng J.},
journal = {Carbohydr Res},
year = {2019},
doi = {10.1016/j.carres.2018.11.011},
pmid = {30500476}
}
@article{lin98994,
title = {Enhanced butanol production by optimization of medium parameters using Clostridium acetobutylicum YM1.},
author = {Al-Shorgani NKN, Shukor H, Abdeshahian P, Kalil MS, Yusoff WMW, Hamid AA.},
journal = {Saudi J Biol Sci},
year = {2018},
doi = {10.1016/j.sjbs.2016.02.017},
pmid = {30505175}
}
@article{lin99768,
title = {Ferredoxin-linked flavoenzyme defines a family of pyridine nucleotide-independent thioredoxin reductases.},
author = {Buey RM, Fernandez-Justel D, de Pereda JM, Revuelta JL, Schurmann P, Buchanan BB, Balsera M.},
journal = {Proc Natl Acad Sci U S A},
year = {2018},
doi = {10.1073/pnas.1812781115},
pmid = {30510005}
}
@article{lin100014,
title = {Selective production of phase-separable product from a mixture of biomass-derived aqueous oxygenates.},
author = {Wang Y, Peng M, Zhang J, Zhang Z, An J, Du S, An H, Fan F, Liu X, Zhai P, Ma D, Wang F.},
journal = {Nat Commun},
year = {2018},
doi = {10.1038/s41467-018-07593-0},
pmid = {30518938}
}
@article{lin368964,
title = {l-Rhamnose Metabolism in Clostridium beijerinckii Strain DSM 6423.},
author = {Diallo M, Simons AD, van der Wal H, Collas F, Houweling-Tan B, Kengen SWM, Lopez-Contreras AM.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.02656-18},
pmid = {30578270}
}
@article{lin99426,
title = {Nutrient modulation based process engineering strategy for improved butanol production from Clostridium acetobutylicum.},
author = {Ahlawat S, Kaushal M, Palabhanvi B, Muthuraj M, Goswami G, Das D.},
journal = {Biotechnol Prog},
year = {2019},
doi = {10.1002/btpr.2771},
pmid = {30592566}
}
@article{lin7225,
title = {Clostridium strain selection for co-culture with Bacillus subtilis for butanol production from agave hydrolysates.},
author = {Oliva-Rodriguez AG, Quintero J, Medina-Morales MA, Morales-Martinez TK, Rodriguez-De la Garza JA, Moreno-Davila M, Aroca G, Rios Gonzalez LJ},
journal = {Bioresour Technol},
year = {2018},
doi = {10.1016/j.biortech.2018.12.085},
pmid = {30605828}
}
@article{lin99509,
title = {Phage serine integrase-mediated genome engineering for efficient expression of chemical biosynthetic pathway in gas-fermenting Clostridium ljungdahlii.},
author = {Huang H, Chai C, Yang S, Jiang W, Gu Y.},
journal = {Metab Eng},
year = {2019},
doi = {10.1016/j.ymben.2019.01.005},
pmid = {30633974}
}
@article{lin98977,
title = {Metabolic engineering of Escherichia coli carrying the hybrid acetone-biosynthesis pathway for efficient acetone biosynthesis from acetate.},
author = {Yang H, Huang B, Lai N, Gu Y, Li Z, Ye Q, Wu H, Wu H.},
journal = {Microb Cell Fact},
year = {2019},
doi = {10.1186/s12934-019-1054-8},
pmid = {30642338}
}
@article{lin99451,
title = {Multi-modular engineering for renewable production of isoprene via mevalonate pathway in Escherichia coli.},
author = {Liu CL, Dong HG, Zhan J, Liu X, Yang Y.},
journal = {J Appl Microbiol},
year = {2019},
doi = {10.1111/jam.14204},
pmid = {30656788}
}
@article{lin7224,
title = {Improved n-Butanol Production from Clostridium cellulovorans by Integrated Metabolic and Evolutionary Engineering.},
author = {Wen Z, Ledesma-Amaro R, Lin J, Jiang Y, Yang S},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/AEM.02560-18},
pmid = {30658972}
}
@article{lin98919,
title = {Engineering Clostridial Aldehyde/Alcohol Dehydrogenase for Selective Butanol Production.},
author = {Cho C, Hong S, Moon HG, Jang YS, Kim D, Lee SY.},
journal = {mBio},
year = {2019},
doi = {10.1128/mbio.02683-18},
pmid = {30670620}
}
@article{lin99450,
title = {Anaerobic butanol production driven by oxygen-evolving photosynthesis using the heterocyst-forming multicellular cyanobacterium Anabaena sp. PCC 7120.},
author = {Higo A, Ehira S.},
journal = {Appl Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s00253-019-09635-z},
pmid = {30673808}
}
@article{lin98825,
title = {Butanol Synthesis Routes for Biofuel Production: Trends and Perspectives.},
author = {Kolesinska B, Fraczyk J, Binczarski M, Modelska M, Berlowska J, Dziugan P, Antolak H, Kaminski ZJ, Witonska IA, Kregiel D.},
journal = {Materials (Basel)},
year = {2019},
doi = {10.3390/ma12030350},
pmid = {30678076}
}
@article{lin98986,
title = {Acidogenesis, solventogenesis, metabolic stress response and life cycle changes in Clostridium beijerinckii NRRL B-598 at the transcriptomic level.},
author = {Patakova P, Branska B, Sedlar K, Vasylkivska M, Jureckova K, Kolek J, Koscova P, Provaznik I.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-018-37679-0},
pmid = {30718562}
}
@article{lin99893,
title = {Rapid Bacterial Species Delineation Based on Parameters Derived From Genome Numerical Representations.},
author = {Maderankova D, Jugas R, Sedlar K, Vitek M, Skutkova H.},
journal = {Comput Struct Biotechnol J},
year = {2019},
doi = {10.1016/j.csbj.2018.12.006},
pmid = {30728919}
}
@article{lin99958,
title = {Engineering microbial consortia by division of labor.},
author = {Roell GW, Zha J, Carr RR, Koffas MA, Fong SS, Tang YJ.},
journal = {Microb Cell Fact},
year = {2019},
doi = {10.1186/s12934-019-1083-3},
pmid = {30736778}
}
@article{lin99591,
title = {Finding enzyme cofactors in Protein Data Bank.},
author = {Mukhopadhyay A, Borkakoti N, Pravda L, Tyzack JD, Thornton JM, Velankar S.},
journal = {Bioinformatics},
year = {2019},
doi = {10.1093/bioinformatics/btz115},
pmid = {30759194}
}
@article{lin98927,
title = {Cell factories converting lactate and acetate to butyrate: Clostridium butyricum and microbial communities from dark fermentation bioreactors.},
author = {Detman A, Mielecki D, Chojnacka A, Salamon A, Blaszczyk MK, Sikora A.},
journal = {Microb Cell Fact},
year = {2019},
doi = {10.1186/s12934-019-1085-1},
pmid = {30760264}
}
@article{lin99440,
title = {Membrane assisted continuous production of solvents with integrated solvent removal using liquid-liquid extraction.},
author = {Survase SA, Zebroski R, Bayuadri C, Wang Z, Adamos G, Nagy G, Pylkkanen V.},
journal = {Bioresour Technol},
year = {2019},
doi = {10.1016/j.biortech.2019.02.024},
pmid = {30780098}
}
@article{lin99427,
title = {Butanol and butyric acid production from Saccharina japonica by Clostridium acetobutylicum and Clostridium tyrobutyricum with adaptive evolution.},
author = {Ra CH, Sunwoo IY, Nguyen TH, Sukwong P, Sirisuk P, Jeong GT, Kim SK.},
journal = {Bioprocess Biosyst Eng},
year = {2019},
doi = {10.1007/s00449-018-02063-9},
pmid = {30788572}
}
@article{lin99093,
title = {Discovery and Characterization of a Nitroreductase Capable of Conferring Bacterial Resistance to Chloramphenicol.},
author = {Crofts TS, Sontha P, King AO, Wang B, Biddy BA, Zanolli N, Gaumnitz J, Dantas G.},
journal = {Cell Chem Biol},
year = {2019},
doi = {10.1016/j.chembiol.2019.01.007},
pmid = {30799223}
}
@article{lin99685,
title = {An efficient method for markerless mutant generation by allelic exchange in Clostridium acetobutylicum and Clostridium saccharobutylicum using suicide vectors.},
author = {Foulquier C, Huang CN, Nguyen NP, Thiel A, Wilding-Steel T, Soula J, Yoo M, Ehrenreich A, Meynial-Salles I, Liebl W, Soucaille P.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1364-4},
pmid = {30809274}
}
@article{lin99059,
title = {Evolution and Functional Analysis of orf1 Within nif Gene Cluster from Paenibacillus graminis RSA19.},
author = {Li Q, Liu X, Zhang H, Chen S.},
journal = {Int J Mol Sci},
year = {2019},
doi = {10.3390/ijms20051145},
pmid = {30845717}
}
@article{lin98938,
title = {RstA Is a Major Regulator of Clostridioides difficile Toxin Production and Motility.},
author = {Edwards AN, Anjuwon-Foster BR, McBride SM.},
journal = {mBio},
year = {2019},
doi = {10.1128/mbio.01991-18},
pmid = {30862746}
}
@article{lin99691,
title = {Continuous Butanol Fermentation of Dilute Acid-Pretreated De-oiled Rice Bran by Clostridium acetobutylicum YM1.},
author = {Al-Shorgani NKN, Al-Tabib AI, Kadier A, Zanil MF, Lee KM, Kalil MS.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-40840-y},
pmid = {30874578}
}
@article{lin99041,
title = {Metabolic engineering of Escherichia coli for the production of butyric acid at high titer and productivity.},
author = {Wang L, Chauliac D, Moritz BE, Zhang G, Ingram LO, Shanmugam KT.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1408-9},
pmid = {30949238}
}
@article{lin99444,
title = {n-Butanol and ethanol production from cellulose by Clostridium cellulovorans overexpressing heterologous aldehyde/alcohol dehydrogenases.},
author = {Bao T, Zhao J, Li J, Liu X, Yang ST.},
journal = {Bioresour Technol},
year = {2019},
doi = {10.1016/j.biortech.2019.121316},
pmid = {30959389}
}
@article{lin99021,
title = {Engineering of vitamin prototrophy in Clostridium ljungdahlii and Clostridium autoethanogenum.},
author = {Annan FJ, Al-Sinawi B, Humphreys CM, Norman R, Winzer K, Kopke M, Simpson SD, Minton NP, Henstra AM.},
journal = {Appl Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s00253-019-09763-6},
pmid = {30972463}
}
@article{lin99045,
title = {Biosynthesis, regulation, and engineering of microbially produced branched biofuels.},
author = {Bai W, Geng W, Wang S, Zhang F.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1424-9},
pmid = {31011367}
}
@article{lin100024,
title = {Structural insight into YcbB-mediated beta-lactam resistance in Escherichia coli.},
author = {Caveney NA, Caballero G, Voedts H, Niciforovic A, Worrall LJ, Vuckovic M, Fonvielle M, Hugonnet JE, Arthur M, Strynadka NCJ.},
journal = {Nat Commun},
year = {2019},
doi = {10.1038/s41467-019-09507-0},
pmid = {31015395}
}
@article{lin98908,
title = {Impact of iron reduction on the metabolism of Clostridium acetobutylicum.},
author = {List C, Hosseini Z, Lederballe Meibom K, Hatzimanikatis V, Bernier-Latmani R.},
journal = {Environ Microbiol},
year = {2019},
doi = {10.1111/1462-2920.14640},
pmid = {31020759}
}
@article{lin98914,
title = {Omics-based analyses revealed metabolic responses of Clostridium acetobutylicum to lignocellulose-derived inhibitors furfural, formic acid and phenol stress for butanol fermentation.},
author = {Liu H, Zhang J, Yuan J, Jiang X, Jiang L, Zhao G, Huang D, Liu B.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1440-9},
pmid = {31057667}
}
@article{lin98892,
title = {A Strongly Fluorescing Anaerobic Reporter and Protein-Tagging System for Clostridium Organisms Based on the Fluorescence-Activating and Absorption-Shifting Tag Protein (FAST).},
author = {Streett HE, Kalis KM, Papoutsakis ET.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.00622-19},
pmid = {31076434}
}
@article{lin99141,
title = {Development of a metabolic pathway transfer and genomic integration system for the syngas-fermenting bacterium Clostridium ljungdahlii.},
author = {Philipps G, de Vries S, Jennewein S.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1448-1},
pmid = {31086564}
}
@article{lin98885,
title = {Improved Biobutanol Production in 2-L Simultaneous Saccharification and Fermentation with Delayed Yeast Extract Feeding and in-situ Recovery.},
author = {Salleh MSM, Ibrahim MF, Roslan AM, Abd-Aziz S.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-43718-1},
pmid = {31092836}
}
@article{lin99421,
title = {Correction to: Butanol and butyric acid production from Saccharina japonica by Clostridium acetobutylicum and Clostridium tyrobutyricum with adaptive evolution.},
author = {Ra CH, Sunwoo IY, Nguyen TH, Sukwong P, Sirisuk P, Jeong GT, Kim SK.},
journal = {Bioprocess Biosyst Eng},
year = {2019},
doi = {10.1007/s00449-019-02145-2},
pmid = {31111211}
}
@article{lin368957,
title = {Chromosomal integration of aldo-keto-reductase and short-chain dehydrogenase/reductase genes in Clostridium beijerinckii NCIMB 8052 enhanced tolerance to lignocellulose-derived microbial inhibitory compounds.},
author = {Okonkwo CC, Ujor V, Ezeji TC.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-44061-1},
pmid = {31114009}
}
@article{lin98930,
title = {EMUlator: An Elementary Metabolite Unit (EMU) Based Isotope Simulator Enabled by Adjacency Matrix.},
author = {Wu C, Chen CH, Lo J, Michener W, Maness P, Xiong W.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.00922},
pmid = {31114561}
}
@article{lin99457,
title = {Engineering Clostridium for improved solvent production: recent progress and perspective.},
author = {Cheng C, Bao T, Yang ST.},
journal = {Appl Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s00253-019-09916-7},
pmid = {31139901}
}
@article{lin7222,
title = {Strategic intensification in butanol production by exogenous amino acid supplementation: Fermentation kinetics and thermodynamic studies.},
author = {Nimbalkar PR, Khedkar MA, Kulkarni RK, Chavan PV, Bankar SB},
journal = {Bioresour Technol},
year = {2019},
doi = {10.1016/j.biortech.2019.121521},
pmid = {31154278}
}
@article{lin100023,
title = {Modulation of Fatty Acid Composition of Aspergillus oryzae in Response to Ethanol Stress.},
author = {Ma L, Fu L, Hu Z, Li Y, Zheng X, Zhang Z, Jiang C, Zeng B.},
journal = {Microorganisms},
year = {2019},
doi = {10.3390/microorganisms7060158},
pmid = {31159383}
}
@article{lin99904,
title = {Structure-Function Analysis of the Phosphoesterase Component of the Nucleic Acid End-Healing Enzyme Runella slithyformis HD-Pnk.},
author = {Munir A, Shuman S.},
journal = {J Bacteriol},
year = {2019},
doi = {10.1128/jb.00292-19},
pmid = {31160396}
}
@article{lin99020,
title = {Barriers to genome editing with CRISPR in bacteria.},
author = {Vento JM, Crook N, Beisel CL.},
journal = {J Ind Microbiol Biotechnol},
year = {2019},
doi = {10.1007/s10295-019-02195-1},
pmid = {31165970}
}
@article{lin7221,
title = {Kinetic modeling of Stickland reactions-coupled methanogenesis for a methanogenic culture.},
author = {Sangavai C, Bharathi M, Ganesh SP, Chellapandi P},
journal = {AMB Express},
year = {2019},
doi = {10.1186/s13568-019-0803-8},
pmid = {31183623}
}
@article{lin99928,
title = {Growth-coupled bioconversion of levulinic acid to butanone.},
author = {Mehrer CR, Rand JM, Incha MR, Cook TB, Demir B, Motagamwala AH, Kim D, Dumesic JA, Pfleger BF.},
journal = {Metab Eng},
year = {2019},
doi = {10.1016/j.ymben.2019.06.003},
pmid = {31226347}
}
@article{lin99423,
title = {Flavin secretion of Clostridium acetobutylicum in a bioelectrochemical system - Is an iron limitation involved?},
author = {Engel M, Bayer H, Holtmann D, Tippkotter N, Ulber R.},
journal = {Bioelectrochemistry},
year = {2019},
doi = {10.1016/j.bioelechem.2019.05.014},
pmid = {31229862}
}
@article{lin100008,
title = {Quantitative proteomic analysis reveals the ethanologenic metabolism regulation of Ethanoligenens harbinense by exogenous ethanol addition.},
author = {Li H, Mei X, Liu B, Xie G, Ren N, Xing D.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1511-y},
pmid = {31297154}
}
@article{lin7220,
title = {Regulation of butanol biosynthesis in Clostridium acetobutylicum ATCC 824 under the influence of zinc supplementation and magnesium starvation.},
author = {Mukherjee M, Sarkar P, Goswami G, Das D},
journal = {Enzyme Microb Technol},
year = {2019},
doi = {10.1016/j.enzmictec.2019.05.009},
pmid = {31307579}
}
@article{lin99795,
title = {Metabolic engineering of Clostridium thermocellum for n-butanol production from cellulose.},
author = {Tian L, Conway PM, Cervenka ND, Cui J, Maloney M, Olson DG, Lynd LR.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1524-6},
pmid = {31367231}
}
@article{lin99731,
title = {Lipidomic Analysis of Clostridium cadaveris and Clostridium fallax.},
author = {Guan Z, Garrett TA, Goldfine H.},
journal = {Lipids},
year = {2019},
doi = {10.1002/lipd.12181},
pmid = {31368115}
}
@article{lin99012,
title = {An Efficient New Process for the Selective Production of Odd-Chain Carboxylic Acids by Simple Carbon Elongation Using Megasphaera hexanoica.},
author = {Kim H, Jeon BS, Sang BI.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-48591-6},
pmid = {31427713}
}
@article{lin98968,
title = {Consolidated bioprocessing for butanol production of cellulolytic Clostridia: development and optimization.},
author = {Wen Z, Li Q, Liu J, Jin M, Yang S.},
journal = {Microb Biotechnol},
year = {2020},
doi = {10.1111/1751-7915.13478},
pmid = {31448546}
}
@article{lin7219,
title = {Enhanced Biobutanol Production in Folic Acid-Induced Medium by Using Clostridium acetobutylicum NRRL B-527.},
author = {Nimbalkar PR, Khedkar MA, Chavan PV, Bankar SB},
journal = {ACS Omega},
year = {2019},
doi = {10.1021/acsomega.9b00583},
pmid = {31460424}
}
@article{lin99940,
title = {Peptidoglycan-type analysis of the N-acetylmuramic acid auxotrophic oral pathogen Tannerella forsythia and reclassification of the peptidoglycan-type of Porphyromonas gingivalis.},
author = {Mayer VMT, Hottmann I, Figl R, Altmann F, Mayer C, Schaffer C.},
journal = {BMC Microbiol},
year = {2019},
doi = {10.1186/s12866-019-1575-7},
pmid = {31477019}
}
@article{lin7218,
title = {The significance of aspartate on NAD(H) biosynthesis and ABE fermentation in Clostridium acetobutylicum ATCC 824.},
author = {Liao Z, Yang X, Fu H, Wang J},
journal = {AMB Express},
year = {2019},
doi = {10.1186/s13568-019-0874-6},
pmid = {31506849}
}
@article{lin99744,
title = {Bayesian metabolic flux analysis reveals intracellular flux couplings.},
author = {Heinonen M, Osmala M, Mannerstrom H, Wallenius J, Kaski S, Rousu J, Lahdesmaki H.},
journal = {Bioinformatics},
year = {2019},
doi = {10.1093/bioinformatics/btz315},
pmid = {31510676}
}
@article{lin99007,
title = {Large-Scale Molecular Evolutionary Analysis Uncovers a Variety of Polynucleotide Kinase Clp1 Family Proteins in the Three Domains of Life.},
author = {Saito M, Sato A, Nagata S, Tamaki S, Tomita M, Suzuki H, Kanai A.},
journal = {Genome Biol Evol},
year = {2019},
doi = {10.1093/gbe/evz195},
pmid = {31513263}
}
@article{lin99876,
title = {Effective continuous acetone-butanol-ethanol production with full utilization of cassava by immobilized symbiotic TSH06.},
author = {Lin Z, Liu H, Wu J, Patakova P, Branska B, Zhang J.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1561-1},
pmid = {31534478}
}
@article{lin99133,
title = {Near-equilibrium glycolysis supports metabolic homeostasis and energy yield.},
author = {Park JO, Tanner LB, Wei MH, Khana DB, Jacobson TB, Zhang Z, Rubin SA, Li SH, Higgins MB, Stevenson DM, Amador-Noguez D, Rabinowitz JD.},
journal = {Nat Chem Biol},
year = {2019},
doi = {10.1038/s41589-019-0364-9},
pmid = {31548693}
}
@article{lin98803,
title = {A Convenient Fluorescence-Based Assay for the Detection of Sucrose Transport and the Introduction of a Sucrose Transporter from Potato into Clostridium Strains.},
author = {Zhang Z, Lin L, Tang H, Zeng S, Guo Y, Wei Y, Huang R, Pang H, Du L.},
journal = {Molecules},
year = {2019},
doi = {10.3390/molecules24193495},
pmid = {31561523}
}
@article{lin99415,
title = {Using poly(vinyldodecylimidazolium bromide) for the in-situ product recovery of n-butanol.},
author = {Vincent RH, Parent JS, Daugulis AJ.},
journal = {Biotechnol Prog},
year = {2020},
doi = {10.1002/btpr.2926},
pmid = {31587514}
}
@article{lin99409,
title = {Trends in Systems Biology for the Analysis and Engineering of Clostridium acetobutylicum Metabolism.},
author = {Yoo M, Nguyen NP, Soucaille P.},
journal = {Trends Microbiol},
year = {2020},
doi = {10.1016/j.tim.2019.09.003},
pmid = {31627989}
}
@article{lin99434,
title = {Generating dihydrogen by tethering an [FeFe]hydrogenase via a molecular wire to the A1A/A1B sites of photosystem I.},
author = {Gorka M, Golbeck JH.},
journal = {Photosynth Res},
year = {2020},
doi = {10.1007/s11120-019-00685-y},
pmid = {31673863}
}
@article{lin368956,
title = {Control of solvent production by sigma-54 factor and the transcriptional activator AdhR in Clostridium beijerinckii.},
author = {Yang B, Nie X, Gu Y, Jiang W, Yang C.},
journal = {Microb Biotechnol},
year = {2020},
doi = {10.1111/1751-7915.13505},
pmid = {31691520}
}
@article{lin98979,
title = {Transcriptional analysis of amino acid, metal ion, vitamin and carbohydrate uptake in butanol-producing Clostridium beijerinckii NRRL B-598.},
author = {Vasylkivska M, Jureckova K, Branska B, Sedlar K, Kolek J, Provaznik I, Patakova P.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0224560},
pmid = {31697692}
}
@article{lin99027,
title = {beta-Xylosidases: Structural Diversity, Catalytic Mechanism, and Inhibition by Monosaccharides.},
author = {Rohman A, Dijkstra BW, Puspaningsih NNT.},
journal = {Int J Mol Sci},
year = {2019},
doi = {10.3390/ijms20225524},
pmid = {31698702}
}
@article{lin98876,
title = {Pleiotropic regulation of a glucose-specific PTS in Clostridium acetobutylicum for high-efficient butanol production from corn stover without detoxification.},
author = {Wu Y, Bai Y, Zhang D, Cheng C, Chen L, Bai F, Xue C.},
journal = {Biotechnol Biofuels},
year = {2019},
doi = {10.1186/s13068-019-1604-7},
pmid = {31709013}
}
@article{lin99410,
title = {Efficient butanol production under aerobic conditions by coculture of Clostridium acetobutylicum and Nesterenkonia sp. strain F.},
author = {Ebrahimi E, Amiri H, Asadollahi MA, Shojaosadati SA.},
journal = {Biotechnol Bioeng},
year = {2020},
doi = {10.1002/bit.27221},
pmid = {31709516}
}
@article{lin99433,
title = {Efficient isopropanol biosynthesis by engineered Escherichia coli using biologically produced acetate from syngas fermentation.},
author = {Yang H, Zhang C, Lai N, Huang B, Fei P, Ding D, Hu P, Gu Y, Wu H, Wu H.},
journal = {Bioresour Technol},
year = {2020},
doi = {10.1016/j.biortech.2019.122337},
pmid = {31727559}
}
@article{lin99500,
title = {Organism Engineering for the Bioproduction of the Triaminotrinitrobenzene (TATB) Precursor Phloroglucinol (PG).},
author = {Meyer A, Saaem I, Silverman A, Varaljay VA, Mickol R, Blum S, Tobias AV, Schwalm ND, Mojadedi W, Onderko E, Bristol C, Liu S, Pratt K, Casini A, Eluere R, Moser F, Drake C, Gupta M, Kelley-Loughnane N, Lucks JP, Akingbade KL, Lux MP, Glaven S, Crookes-Goodson W, Jewett MC, Gordon DB, Voigt CA.},
journal = {ACS Synth Biol},
year = {2019},
doi = {10.1021/acssynbio.9b00393},
pmid = {31750651}
}
@article{lin7217,
title = {Biochemical characterization of an esterase from Clostridium acetobutylicum with novel GYSMG pentapeptide motif at the catalytic domain.},
author = {Nagaroor V, Gummadi SN},
journal = {J Ind Microbiol Biotechnol},
year = {2019},
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title = {Production of ethanol from Jerusalem artichoke by mycelial pellets.},
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title = {The current strategies and parameters for the enhanced microbial production of 2,3-butanediol.},
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journal = {Biotechnol Rep (Amst)},
year = {2020},
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@article{lin99171,
title = {Development of both type I-B and type II CRISPR/Cas genome editing systems in the cellulolytic bacterium Clostridium thermocellum.},
author = {Walker JE, Lanahan AA, Zheng T, Toruno C, Lynd LR, Cameron JC, Olson DG, Eckert CA.},
journal = {Metab Eng Commun},
year = {2020},
doi = {10.1016/j.mec.2019.e00116},
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title = {Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data.},
author = {Galan-Vasquez E, Perez-Rueda E.},
journal = {Front Mol Biosci},
year = {2019},
doi = {10.3389/fmolb.2019.00139},
pmid = {31921888}
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@article{lin7216,
title = {Efficient bio-butanol production from lignocellulosic waste by elucidating the mechanisms of Clostridium acetobutylicum response to phenolic inhibitors.},
author = {Luo H, Zheng P, Bilal M, Xie F, Zeng Q, Zhu C, Yang R, Wang Z},
journal = {Sci Total Environ},
year = {2019},
doi = {10.1016/j.scitotenv.2019.136399},
pmid = {31923698}
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@article{lin99414,
title = {Biofilm Polysaccharide Display Platform: A Natural, Renewable, and Biocompatible Material for Improved Lipase Performance.},
author = {Dong H, Zhang W, Wang Y, Liu D, Wang P.},
journal = {J Agric Food Chem},
year = {2020},
doi = {10.1021/acs.jafc.9b07209},
pmid = {31927950}
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@article{lin7215,
title = {Metabolic Engineering of Clostridium cellulovorans to Improve Butanol Production by Consolidated Bioprocessing.},
author = {Wen Z, Ledesma-Amaro R, Lu M, Jin M, Yang S},
journal = {ACS Synth Biol},
year = {2020},
doi = {10.1021/acssynbio.9b00331},
pmid = {31940438}
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@article{lin100009,
title = {Exploiting nonionic surfactants to enhance fatty alcohol production in Rhodosporidium toruloides.},
author = {Liu D, Geiselman GM, Coradetti S, Cheng YF, Kirby J, Prahl JP, Jacobson O, Sundstrom ER, Tanjore D, Skerker JM, Gladden J.},
journal = {Biotechnol Bioeng},
year = {2020},
doi = {10.1002/bit.27285},
pmid = {31981215}
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@article{lin368958,
title = {Ferrous-Iron-Activated Transcriptional Factor AdhR Regulates Redox Homeostasis in Clostridium beijerinckii.},
author = {Yang B, Nie X, Xiao Y, Gu Y, Jiang W, Yang C.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.02782-19},
pmid = {32005735}
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@article{lin7214,
title = {Butyric acid production from spent coffee grounds by engineered Clostridium tyrobutyricum overexpressing galactose catabolism genes.},
author = {He F, Qin S, Yang Z, Bai X, Suo Y, Wang J},
journal = {Bioresour Technol},
year = {2020},
doi = {10.1016/j.biortech.2020.122977},
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@article{lin100005,
title = {Genomic Considerations for the Modification of Saccharomyces cerevisiae for Biofuel and Metabolite Biosynthesis.},
author = {Arnone JT.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8030321},
pmid = {32110897}
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@article{lin99970,
title = {An Information Entropy-Based Approach for Computationally Identifying Histone Lysine Butyrylation.},
author = {Huang G, Zheng Y, Wu YQ, Han GS, Yu ZG.},
journal = {Front Genet},
year = {2019},
doi = {10.3389/fgene.2019.01325},
pmid = {32117407}
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@article{lin368965,
title = {Inactivation of the Levansucrase Gene in Paenibacillus polymyxa DSM 365 Diminishes Exopolysaccharide Biosynthesis during 2,3-Butanediol Fermentation.},
author = {Okonkwo CC, Ujor V, Cornish K, Ezeji TC.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.00196-20},
pmid = {32144108}
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@article{lin99429,
title = {Adenosine Triphosphate and Carbon Efficient Route to Second Generation Biofuel Isopentanol.},
author = {Eiben CB, Tian T, Thompson MG, Mendez-Perez D, Kaplan N, Goyal G, Chiniquy J, Hillson NJ, Lee TS, Keasling JD.},
journal = {ACS Synth Biol},
year = {2020},
doi = {10.1021/acssynbio.9b00402},
pmid = {32149502}
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@article{lin99775,
title = {Functional Characterization of COG1713 (YqeK) as a Novel Diadenosine Tetraphosphate Hydrolase Family.},
author = {Minazzato G, Gasparrini M, Amici A, Cianci M, Mazzola F, Orsomando G, Sorci L, Raffaelli N.},
journal = {J Bacteriol},
year = {2020},
doi = {10.1128/jb.00053-20},
pmid = {32152217}
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@article{lin98949,
title = {Pathway dissection, regulation, engineering and application: lessons learned from biobutanol production by solventogenic clostridia.},
author = {Li S, Huang L, Ke C, Pang Z, Liu L.},
journal = {Biotechnol Biofuels},
year = {2020},
doi = {10.1186/s13068-020-01674-3},
pmid = {32165923}
}
@article{lin7213,
title = {Combined evolutionary engineering and genetic manipulation improve low pH tolerance and butanol production in a synthetic microbial Clostridium community.},
author = {Wen Z, Ledesma-Amaro R, Lu M, Jiang Y, Gao S, Jin M, Yang S},
journal = {Biotechnol Bioeng},
year = {2020},
doi = {10.1002/bit.27333},
pmid = {32170874}
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@article{lin100006,
title = {Advances in bacterial transcriptome understanding: From overlapping transcription to the excludon concept.},
author = {Toledo-Arana A, Lasa I.},
journal = {Mol Microbiol},
year = {2020},
doi = {10.1111/mmi.14456},
pmid = {32185833}
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@article{lin100001,
title = {Pectinolytic Bacterial Consortia Reduce Jute Retting Period and Improve Fibre Quality.},
author = {Hasan R, Aktar N, Kabir SMT, Honi U, Halim A, Islam R, Sarker MDH, Haque MS, Alam MM, Islam MS.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-61898-z},
pmid = {32198430}
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@article{lin99413,
title = {A novel regulatory pathway consisting of a two-component system and an ABC-type transporter contributes to butanol tolerance in Clostridium acetobutylicum.},
author = {Yang Y, Lang N, Zhang L, Wu H, Wu H, Jiang W, Gu Y.},
journal = {Appl Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s00253-020-10555-6},
pmid = {32242264}
}
@article{lin99831,
title = {Genome-Scale Metabolic Network Reconstruction and In Silico Analysis of Hexanoic acid Producing Megasphaera elsdenii.},
author = {Lee NR, Lee CH, Lee DY, Park JB.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8040539},
pmid = {32283671}
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@article{lin99079,
title = {Effect of residual extractable lignin on acetone-butanol-ethanol production in SHF and SSF processes.},
author = {Li J, Zhang Y, Shi S, Tu M.},
journal = {Biotechnol Biofuels},
year = {2020},
doi = {10.1186/s13068-020-01710-2},
pmid = {32308736}
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@article{lin98988,
title = {Beyond Intracellular Accumulation of Polyhydroxyalkanoates: Chiral Hydroxyalkanoic Acids and Polymer Secretion.},
author = {Yanez L, Conejeros R, Vergara-Fernandez A, Scott F.},
journal = {Front Bioeng Biotechnol},
year = {2020},
doi = {10.3389/fbioe.2020.00248},
pmid = {32318553}
}
@article{lin99915,
title = {A Gold Standard, CRISPR/Cas9-Based Complementation Strategy Reliant on 24 Nucleotide Bookmark Sequences.},
author = {Seys FM, Rowe P, Bolt EL, Humphreys CM, Minton NP.},
journal = {Genes (Basel)},
year = {2020},
doi = {10.3390/genes11040458},
pmid = {32340238}
}
@article{lin99724,
title = {Food selectivity of anaerobic protists and direct evidence for methane production using carbon from prey bacteria by endosymbiotic methanogen.},
author = {Hirakata Y, Hatamoto M, Oshiki M, Watari T, Araki N, Yamaguchi T.},
journal = {ISME J},
year = {2020},
doi = {10.1038/s41396-020-0660-0},
pmid = {32341474}
}
@article{lin98877,
title = {The Small RNA sr8384 Is a Crucial Regulator of Cell Growth in Solventogenic Clostridia.},
author = {Yang Y, Zhang H, Lang N, Zhang L, Chai C, He H, Jiang W, Gu Y.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.00665-20},
pmid = {32358006}
}
@article{lin7212,
title = {RRNPP-type quorum sensing affects solvent formation and sporulation in Clostridium acetobutylicum.},
author = {Kotte AK, Severn O, Bean Z, Schwarz K, Minton NP, Winzer K},
journal = {Microbiology (Reading)},
year = {2020},
doi = {10.1099/mic.0.000916},
pmid = {32375981}
}
@article{lin7211,
title = {A CRISPR/Anti-CRISPR Genome Editing Approach Underlines the Synergy of Butanol Dehydrogenases in Clostridium acetobutylicum DSM 792.},
author = {Wasels F, Chartier G, Hocq R, Lopes Ferreira N},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/AEM.00408-20},
pmid = {32385078}
}
@article{lin98992,
title = {XynDZ5: A New Thermostable GH10 Xylanase.},
author = {Zarafeta D, Galanopoulou AP, Leni ME, Kaili SI, Chegkazi MS, Chrysina ED, Kolisis FN, Hatzinikolaou DG, Skretas G.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.00545},
pmid = {32390953}
}
@article{lin100025,
title = {Instigation of indigenous thermophilic bacterial consortia for enhanced oil recovery from high temperature oil reservoirs.},
author = {Sharma N, Lavania M, Kukreti V, Lal B.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0229889},
pmid = {32396555}
}
@article{lin99856,
title = {Metabolomics Analysis Reveals Global Metabolic Changes in the Evolved E. coli Strain with Improved Growth and 1-Butanol Production in Minimal Medium.},
author = {Lavina WA, Sakurai SSM, Pontrelli S, Putri SP, Fukusaki E.},
journal = {Metabolites},
year = {2020},
doi = {10.3390/metabo10050192},
pmid = {32414016}
}
@article{lin99983,
title = {Radical SAM Enzyme HydE Generates Adenosylated Fe(I) Intermediates En Route to the [FeFe]-Hydrogenase Catalytic H-Cluster.},
author = {Tao L, Pattenaude SA, Joshi S, Begley TP, Rauchfuss TB, Britt RD.},
journal = {J Am Chem Soc},
year = {2020},
doi = {10.1021/jacs.0c03802},
pmid = {32434327}
}
@article{lin99816,
title = {Production and Sensing of Butyrate in a Probiotic Escherichia coli Strain.},
author = {Bai Y, Mansell TJ.},
journal = {Int J Mol Sci},
year = {2020},
doi = {10.3390/ijms21103615},
pmid = {32443851}
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@article{lin99405,
title = {Effects of Spo0A on Clostridium acetobutylicum with an emphasis on biofilm formation.},
author = {Yang Z, Wang Z, Lei M, Zhu J, Yang Y, Wu S, Yu B, Niu H, Ying H, Liu D, Wang Y.},
journal = {World J Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s11274-020-02859-6},
pmid = {32444896}
}
@article{lin99071,
title = {Nitrogen Fixation in Pozol, a Traditional Fermented Beverage.},
author = {Rizo J, Rogel MA, Guillen D, Wacher C, Martinez-Romero E, Encarnacion S, Sanchez S, Rodriguez-Sanoja R.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.00588-20},
pmid = {32503911}
}
@article{lin98867,
title = {CaXyn30B from the solventogenic bacterium Clostridium acetobutylicum is a glucuronic acid-dependent endoxylanase.},
author = {Crooks C, Long L, St John FJ.},
journal = {BMC Res Notes},
year = {2020},
doi = {10.1186/s13104-020-05091-5},
pmid = {32522254}
}
@article{lin99854,
title = {Substrate promiscuity of polyketide synthase enables production of tsetse fly attractants 3-ethylphenol and 3-propylphenol by engineering precursor supply in yeast.},
author = {Hitschler J, Grininger M, Boles E.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-66997-5},
pmid = {32561880}
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@article{lin368966,
title = {Large-scale metabolic interaction network of the mouse and human gut microbiota.},
author = {Lim R, Cabatbat JJT, Martin TLP, Kim H, Kim S, Sung J, Ghim CM, Kim PJ.},
journal = {Sci Data},
year = {2020},
doi = {10.1038/s41597-020-0516-5},
pmid = {32591517}
}
@article{lin98912,
title = {Development of optimal steam explosion pretreatment and highly effective cell factory for bioconversion of grain vinegar residue to butanol.},
author = {Xia M, Peng M, Xue D, Cheng Y, Li C, Wang D, Lu K, Zheng Y, Xia T, Song J, Wang M.},
journal = {Biotechnol Biofuels},
year = {2020},
doi = {10.1186/s13068-020-01751-7},
pmid = {32595760}
}
@article{lin99430,
title = {Genome sequence analysis of the temperate bacteriophage TBP2 of the solvent producer Clostridium saccharoperbutylacetonicum N1-4 (HMT, ATCC 27021).},
author = {Schuler MA, Stegmann BA, Poehlein A, Daniel R, Durre P.},
journal = {FEMS Microbiol Lett},
year = {2020},
doi = {10.1093/femsle/fnaa103},
pmid = {32614389}
}
@article{lin99679,
title = {A small-scale investigation process for the Clostridium acetobutylicum production of butanol using high-energy carbon heavy ion irradiation.},
author = {Jiang TT, Zhou X, Liang Y.},
journal = {Eng Life Sci},
year = {2018},
doi = {10.1002/elsc.201800090},
pmid = {32624866}
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@article{lin368961,
title = {Engineering the gut microbiota to treat chronic diseases.},
author = {Dosoky NS, May-Zhang LS, Davies SS.},
journal = {Appl Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s00253-020-10771-0},
pmid = {32696297}
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@article{lin98894,
title = {Development of Strong Anaerobic Fluorescent Reporters for Clostridium acetobutylicum and Clostridium ljungdahlii Using HaloTag and SNAP-tag Proteins.},
author = {Charubin K, Streett H, Papoutsakis ET.},
journal = {Appl Environ Microbiol},
year = {2020},
doi = {10.1128/aem.01271-20},
pmid = {32769192}
}
@article{lin99592,
title = {Fully biological production of adipic acid analogs from branched catechols.},
author = {Kruyer NS, Wauldron N, Bommarius AS, Peralta-Yahya P.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-70158-z},
pmid = {32770001}
}
@article{lin99412,
title = {Recent advances in n-butanol and butyrate production using engineered Clostridium tyrobutyricum.},
author = {Bao T, Feng J, Jiang W, Fu H, Wang J, Yang ST.},
journal = {World J Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s11274-020-02914-2},
pmid = {32794091}
}
@article{lin98816,
title = {Biohydrogen production beyond the Thauer limit by precision design of artificial microbial consortia.},
author = {Ergal I, Graf O, Hasibar B, Steiner M, Vukotic S, Bochmann G, Fuchs W, Rittmann SKR.},
journal = {Commun Biol},
year = {2020},
doi = {10.1038/s42003-020-01159-x},
pmid = {32796915}
}
@article{lin7210,
title = {Genetic sensor-regulators functional in Clostridia.},
author = {Han S, Kim Y, Karanjikar M, San KY, Bennett GN},
journal = {J Ind Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s10295-020-02303-6},
pmid = {32851482}
}
@article{lin99066,
title = {Interspecies Microbial Fusion and Large-Scale Exchange of Cytoplasmic Proteins and RNA in a Syntrophic Clostridium Coculture.},
author = {Charubin K, Modla S, Caplan JL, Papoutsakis ET.},
journal = {mBio},
year = {2020},
doi = {10.1128/mbio.02030-20},
pmid = {32873766}
}
@article{lin98924,
title = {Application of different types of CRISPR/Cas-based systems in bacteria.},
author = {Liu Z, Dong H, Cui Y, Cong L, Zhang D.},
journal = {Microb Cell Fact},
year = {2020},
doi = {10.1186/s12934-020-01431-z},
pmid = {32883277}
}
@article{lin98810,
title = {Towards continuous industrial bioprocessing with solventogenic and acetogenic clostridia: challenges, progress and perspectives.},
author = {Vees CA, Neuendorf CS, Pflugl S.},
journal = {J Ind Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s10295-020-02296-2},
pmid = {32894379}
}
@article{lin368951,
title = {Milling byproducts are an economically viable substrate for butanol production using clostridial ABE fermentation.},
author = {Thieme N, Panitz JC, Held C, Lewandowski B, Schwarz WH, Liebl W, Zverlov V.},
journal = {Appl Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s00253-020-10882-8},
pmid = {32915256}
}
@article{lin99519,
title = {Enhancing starch accumulation/production in Chlorococcum humicola through sulphur limitation and 2,4- D treatment for butanol production.},
author = {Narchonai G, Arutselvan C, LewisOscar F, Thajuddin N.},
journal = {Biotechnol Rep (Amst)},
year = {2020},
doi = {10.1016/j.btre.2020.e00528},
pmid = {32995316}
}
@article{lin98801,
title = {Induced Production, Synthesis, and Immunomodulatory Action of Clostrisulfone, a Diarylsulfone from Clostridium acetobutylicum.},
author = {Neuwirth T, Letzel AC, Tank C, Ishida K, Cyrulies M, Schmolz L, Lorkowski S, Hertweck C.},
journal = {Chemistry},
year = {2020},
doi = {10.1002/chem.202003500},
pmid = {32996646}
}
@article{lin98890,
title = {Gene coexpression network analysis reveals a novel metabolic mechanism of Clostridium acetobutylicum responding to phenolic inhibitors from lignocellulosic hydrolysates.},
author = {Liu H, Zhang J, Yuan J, Jiang X, Jiang L, Li Z, Yin Z, Du Y, Zhao G, Liu B, Huang D.},
journal = {Biotechnol Biofuels},
year = {2020},
doi = {10.1186/s13068-020-01802-z},
pmid = {32999686}
}
@article{lin7209,
title = {Transcriptomic and Phenotypic Analysis of a spoIIE Mutant in Clostridium beijerinckii.},
author = {Diallo M, Kint N, Monot M, Collas F, Martin-Verstraete I, van der Oost J, Kengen SWM, Lopez-Contreras AM},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.556064},
pmid = {33042064}
}
@article{lin99656,
title = {tsRBase: a comprehensive database for expression and function of tsRNAs in multiple species.},
author = {Zuo Y, Zhu L, Guo Z, Liu W, Zhang J, Zeng Z, Wu Q, Cheng J, Fu X, Jin Y, Zhao Y, Peng Y.},
journal = {Nucleic Acids Res},
year = {2021},
doi = {10.1093/nar/gkaa888},
pmid = {33068436}
}
@article{lin98891,
title = {Reassessment of the role of CaCO3 in n-butanol production from pretreated lignocellulosic biomass by Clostridium acetobutylicum.},
author = {Su Z, Wang F, Xie Y, Xie H, Mao G, Zhang H, Song A, Zhang Z.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-74899-9},
pmid = {33087773}
}
@article{lin99835,
title = {Discovery and mechanism of a pH-dependent dual-binding-site switch in the interaction of a pair of protein modules.},
author = {Yao X, Chen C, Wang Y, Dong S, Liu YJ, Li Y, Cui Z, Gong W, Perrett S, Yao L, Lamed R, Bayer EA, Cui Q, Feng Y.},
journal = {Sci Adv},
year = {2020},
doi = {10.1126/sciadv.abd7182},
pmid = {33097546}
}
@article{lin100027,
title = {Microbial upgrading of acetate into 2,3-butanediol and acetoin by E. coli W.},
author = {Novak K, Kutscha R, Pflugl S.},
journal = {Biotechnol Biofuels},
year = {2020},
doi = {10.1186/s13068-020-01816-7},
pmid = {33110446}
}
@article{lin99397,
title = {[Effects of cell division protein-encoding genes knockout on solvent formation and cell morphology in Clostridium acetobutylicum].},
author = {Zhang M, Xue C.},
journal = {Sheng Wu Gong Cheng Xue Bao},
year = {2020},
doi = {10.13345/j.cjb.200056},
pmid = {33169574}
}
@article{lin100017,
title = {Transcriptome profile of carbon catabolite repression in an efficient l-(+)-lactic acid-producing bacterium Enterococcus mundtii QU25 grown in media with combinations of cellobiose, xylose, and glucose.},
author = {Shiwa Y, Fujiwara H, Numaguchi M, Abdel-Rahman MA, Nabeta K, Kanesaki Y, Tashiro Y, Zendo T, Tanaka N, Fujita N, Yoshikawa H, Sonomoto K, Shimizu-Kadota M.},
journal = {PLoS One},
year = {2020},
doi = {10.1371/journal.pone.0242070},
pmid = {33201910}
}
@article{lin99402,
title = {Optimization of n-butanol synthesis in Lactobacillus brevis via the functional expression of thl, hbd, crt and ter.},
author = {Li Q, Wu M, Wen Z, Jiang Y, Wang X, Zhao Y, Liu J, Yang J, Jiang Y, Yang S.},
journal = {J Ind Microbiol Biotechnol},
year = {2020},
doi = {10.1007/s10295-020-02331-2},
pmid = {33221994}
}
@article{lin99153,
title = {Phenotypic and Genomic Analysis of Clostridium beijerinckii NRRL B-598 Mutants With Increased Butanol Tolerance.},
author = {Vasylkivska M, Branska B, Sedlar K, Jureckova K, Provaznik I, Patakova P.},
journal = {Front Bioeng Biotechnol},
year = {2020},
doi = {10.3389/fbioe.2020.598392},
pmid = {33224939}
}
@article{lin99725,
title = {Two layered strategy for cost effective production of pectinase: immobilization of yeast and utilization of crude substrate.},
author = {Ejaz U, Hanif H, Sohail M.},
journal = {Heliyon},
year = {2020},
doi = {10.1016/j.heliyon.2020.e05456},
pmid = {33225094}
}
@article{lin98822,
title = {Metabolism, morphology and transcriptome analysis of oscillatory behavior of Clostridium butyricum during long-term continuous fermentation for 1,3-propanediol production.},
author = {Zhou JJ, Shen JT, Wang XL, Sun YQ, Xiu ZL.},
journal = {Biotechnol Biofuels},
year = {2020},
doi = {10.1186/s13068-020-01831-8},
pmid = {33292405}
}
@article{lin98944,
title = {Deeper below the surface-transcriptional changes in selected genes of Clostridium beijerinckii in response to butanol shock.},
author = {Patakova P, Kolek J, Jureckova K, Branska B, Sedlar K, Vasylkivska M, Provaznik I.},
journal = {Microbiologyopen},
year = {2021},
doi = {10.1002/mbo3.1146},
pmid = {33319506}
}
@article{lin99026,
title = {Modular cell-free expression plasmids to accelerate biological design in cells.},
author = {Karim AS, Liew FE, Garg S, Vogeli B, Rasor BJ, Gonnot A, Pavan M, Juminaga A, Simpson SD, Kopke M, Jewett MC.},
journal = {Synth Biol (Oxf)},
year = {2020},
doi = {10.1093/synbio/ysaa019},
pmid = {33344777}
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@article{lin7208,
title = {Effects of Carbon Ion Beam Irradiation on Butanol Tolerance and Production of Clostridium acetobutylicum.},
author = {Gao Y, Zhang M, Zhou X, Guo X, Lei C, Li W, Lu D},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.602774},
pmid = {33391222}
}
@article{lin99978,
title = {Efficient Biofilm-Based Fermentation Strategies by eDNA Formation for l-Proline Production with Corynebacterium glutamicum.},
author = {Ren P, Chen T, Liu N, Sun W, Hu G, Yu Y, Yu B, Ouyang P, Liu D, Chen Y.},
journal = {ACS Omega},
year = {2020},
doi = {10.1021/acsomega.0c05095},
pmid = {33403293}
}
@article{lin98917,
title = {Bioprospecting of microbial strains for biofuel production: metabolic engineering, applications, and challenges.},
author = {Adegboye MF, Ojuederie OB, Talia PM, Babalola OO.},
journal = {Biotechnol Biofuels},
year = {2021},
doi = {10.1186/s13068-020-01853-2},
pmid = {33407786}
}
@article{lin7207,
title = {Co-feeding glucose with either gluconate or galacturonate during clostridial fermentations provides metabolic fine-tuning capabilities.},
author = {Zu TNK, Liu S, Gerlach ES, Mojadedi W, Sund CJ},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-020-76761-4},
pmid = {33420096}
}
@article{lin100004,
title = {Quantitative proteomic analysis to reveal expression differences for butanol production from glycerol and glucose by Clostridium sp. strain CT7.},
author = {Jiang Y, Wu R, Lu J, Dong W, Zhou J, Zhang W, Xin F, Jiang M.},
journal = {Microb Cell Fact},
year = {2021},
doi = {10.1186/s12934-021-01508-3},
pmid = {33422075}
}
@article{lin99844,
title = {Metabolic Exchange and Energetic Coupling between Nutritionally Stressed Bacterial Species: Role of Quorum-Sensing Molecules.},
author = {Ranava D, Backes C, Karthikeyan G, Ouari O, Soric A, Guiral M, Cardenas ML, Giudici-Orticoni MT.},
journal = {mBio},
year = {2021},
doi = {10.1128/mbio.02758-20},
pmid = {33468690}
}
@article{lin99956,
title = {Effect of fed-batch and chemostat cultivation processes of C. glutamicum CP for L-leucine production.},
author = {Zhang Y, Xiong H, Chen Z, Fu Y, Xu Q, Chen N.},
journal = {Bioengineered},
year = {2021},
doi = {10.1080/21655979.2021.1874693},
pmid = {33470174}
}
@article{lin99761,
title = {Electrochemical Characterization of a Complex FeFe Hydrogenase, the Electron-Bifurcating Hnd From Desulfovibrio fructosovorans.},
author = {Jacq-Bailly A, Benvenuti M, Payne N, Kpebe A, Felbek C, Fourmond V, Leger C, Brugna M, Baffert C.},
journal = {Front Chem},
year = {2020},
doi = {10.3389/fchem.2020.573305},
pmid = {33490032}
}
@article{lin99964,
title = {A novel hyperthermophilic methylglyoxal synthase: molecular dynamic analysis on the regional fluctuations.},
author = {Seo GY, Lee HS, Kim H, Cho S, Na JG, Yeon YJ, Lee J.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-82078-7},
pmid = {33510339}
}
@article{lin99083,
title = {Impact of Lignocellulose Pretreatment By-Products on S. cerevisiae Strain Ethanol Red Metabolism during Aerobic and An-aerobic Growth.},
author = {Klosowski G, Mikulski D.},
journal = {Molecules},
year = {2021},
doi = {10.3390/molecules26040806},
pmid = {33557207}
}
@article{lin99184,
title = {The Potential of Single-Cell Oils Derived From Filamentous Fungi as Alternative Feedstock Sources for Biodiesel Production.},
author = {Mhlongo SI, Ezeokoli OT, Roopnarain A, Ndaba B, Sekoai PT, Habimana O, Pohl CH.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.637381},
pmid = {33584636}
}
@article{lin98953,
title = {Inactivation of the Pta-AckA pathway impairs fitness of Bacillus anthracis during overflow metabolism.},
author = {Won HI, Watson SM, Ahn JS, Endres JL, Bayles KW, Sadykov MR.},
journal = {J Bacteriol},
year = {2021},
doi = {10.1128/jb.00660-20},
pmid = {33593944}
}
@article{lin7206,
title = {Response characteristics of the membrane integrity and physiological activities of the mutant strain Y217 under exogenous butanol stress.},
author = {Gao Y, Zhou X, Zhang MM, Liu YJ, Guo XP, Lei CR, Li WJ, Lu D},
journal = {Appl Microbiol Biotechnol},
year = {2021},
doi = {10.1007/s00253-021-11174-5},
pmid = {33606076}
}
@article{lin99610,
title = {Modeling Growth Kinetics, Interspecies Cell Fusion, and Metabolism of a Clostridium acetobutylicum/Clostridium ljungdahlii Syntrophic Coculture.},
author = {Foster C, Charubin K, Papoutsakis ET, Maranas CD.},
journal = {mSystems},
year = {2021},
doi = {10.1128/msystems.01325-20},
pmid = {33622858}
}
@article{lin100018,
title = {Enzyme-Primed Native Chemical Ligation Produces Autoinducing Cyclopeptides in Clostridia.},
author = {Molloy EM, Dell M, Hansch VG, Dunbar KL, Feldmann R, Oberheide A, Seyfarth L, Kumpfmuller J, Horch T, Arndt HD, Hertweck C.},
journal = {Angew Chem Int Ed Engl},
year = {2021},
doi = {10.1002/anie.202016378},
pmid = {33625794}
}
@article{lin99655,
title = {Butyrate production in the acetogen Eubacterium limosum is dependent on the carbon and energy source.},
author = {Litty D, Muller V.},
journal = {Microb Biotechnol},
year = {2021},
doi = {10.1111/1751-7915.13779},
pmid = {33629808}
}
@article{lin99289,
title = {Information theoretic perspective on genome clustering.},
author = {Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.},
journal = {Saudi J Biol Sci},
year = {2021},
doi = {10.1016/j.sjbs.2020.12.039},
pmid = {33732074}
}
@article{lin98811,
title = {Polymeric Materials Used for Immobilisation of Bacteria for the Bioremediation of Contaminants in Water.},
author = {Berillo D, Al-Jwaid A, Caplin J.},
journal = {Polymers (Basel)},
year = {2021},
doi = {10.3390/polym13071073},
pmid = {33805360}
}
@article{lin100021,
title = {The Serine Biosynthesis of Paenibacillus polymyxa WLY78 Is Regulated by the T-Box Riboswitch.},
author = {Zhang H, Li Q, Li Y, Chen S.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22063033},
pmid = {33809732}
}
@article{lin99980,
title = {Factors affecting the rapid changes of protein under short-term heat stress.},
author = {Wu B, Qiao J, Wang X, Liu M, Xu S, Sun D.},
journal = {BMC Genomics},
year = {2021},
doi = {10.1186/s12864-021-07560-y},
pmid = {33849452}
}
@article{lin99139,
title = {An insight into the bioelectrochemical photoreduction of CO2 to value-added chemicals.},
author = {Gupta P, Noori MT, Nunez AE, Verma N.},
journal = {iScience},
year = {2021},
doi = {10.1016/j.isci.2021.102294},
pmid = {33851103}
}
@article{lin99836,
title = {Modelling and simulation of multicomponent acetone-butanol-ethanol distillation process in a sieve tray column.},
author = {Pudjiastuti L, Widjaja T, Iskandar KK, Sahid F, Nurkhamidah S, Altway A, Putra AP.},
journal = {Heliyon},
year = {2021},
doi = {10.1016/j.heliyon.2021.e06641},
pmid = {33869863}
}
@article{lin99394,
title = {A high-efficient strategy for combinatorial engineering paralogous gene family: A case study on histidine kinases in Clostridium.},
author = {Zhu C, Du G, Zhang J, Xue C.},
journal = {Biotechnol Bioeng},
year = {2021},
doi = {10.1002/bit.27796},
pmid = {33871069}
}
@article{lin99049,
title = {Recent advances in the valorization of plant biomass.},
author = {Ning P, Yang G, Hu L, Sun J, Shi L, Zhou Y, Wang Z, Yang J.},
journal = {Biotechnol Biofuels},
year = {2021},
doi = {10.1186/s13068-021-01949-3},
pmid = {33892780}
}
@article{lin99872,
title = {Biosynthesis of Commodity Chemicals From Oil Palm Empty Fruit Bunch Lignin.},
author = {Lo TM, Hwang IY, Cho HS, Fedora RE, Chng SH, Choi WJ, Chang MW.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.663642},
pmid = {33897677}
}
@article{lin99850,
title = {The gut microbiota is associated with the small intestinal paracellular permeability and the development of the immune system in healthy children during the first two years of life.},
author = {Kaczmarczyk M, Lober U, Adamek K, Wegrzyn D, Skonieczna-Zydecka K, Malinowski D, Loniewski I, Marko L, Ulas T, Forslund SK, Loniewska B.},
journal = {J Transl Med},
year = {2021},
doi = {10.1186/s12967-021-02839-w},
pmid = {33910577}
}
@article{lin98866,
title = {Improved CRISPR/Cas9 Tools for the Rapid Metabolic Engineering of Clostridium acetobutylicum.},
author = {Wilding-Steele T, Ramette Q, Jacottin P, Soucaille P.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22073704},
pmid = {33918190}
}
@article{lin99004,
title = {Genome Editing in Bacteria: CRISPR-Cas and Beyond.},
author = {Arroyo-Olarte RD, Bravo Rodriguez R, Morales-Rios E.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9040844},
pmid = {33920749}
}
@article{lin99981,
title = {Bioremediation of Crude Glycerol by a Sustainable Organic-Microbe Hybrid System.},
author = {Chan HS, Xiao K, Tsang TH, Zeng C, Wang B, Peng X, Wong PK.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.654033},
pmid = {33967990}
}
@article{lin98937,
title = {A division of labor between two biotin protein ligase homologs.},
author = {Song X, Henke SK, Cronan JE.},
journal = {Mol Microbiol},
year = {2021},
doi = {10.1111/mmi.14761},
pmid = {34028100}
}
@article{lin99791,
title = {Fecal Metaproteomics Reveals Reduced Gut Inflammation and Changed Microbial Metabolism Following Lifestyle-Induced Weight Loss.},
author = {Biemann R, Buss E, Benndorf D, Lehmann T, Schallert K, Puttker S, Reichl U, Isermann B, Schneider JG, Saake G, Heyer R.},
journal = {Biomolecules},
year = {2021},
doi = {10.3390/biom11050726},
pmid = {34066026}
}
@article{lin99977,
title = {Fermented Rapeseed Meal as a Component of the Mink Diet (Neovison vison) Modulating the Gastrointestinal Tract Microbiota.},
author = {Wlazlo L, Nowakowicz-Debek B, Czech A, Chmielowiec-Korzeniowska A, Ossowski M, Kulazynski M, Lukaszewicz M, Krasowska A.},
journal = {Animals (Basel)},
year = {2021},
doi = {10.3390/ani11051337},
pmid = {34066725}
}
@article{lin99990,
title = {Self-sufficient asymmetric reduction of beta-ketoesters catalysed by a novel and robust thermophilic alcohol dehydrogenase co-immobilised with NADH.},
author = {Orrego AH, Andres-Sanz D, Velasco-Lozano S, Sanchez-Costa M, Berenguer J, Guisan JM, Rocha-Martin J, Lopez-Gallego F.},
journal = {Catal Sci Technol},
year = {2021},
doi = {10.1039/d1cy00268f},
pmid = {34094502}
}
@article{lin99973,
title = {Quantitative Bioreactor Monitoring of Intracellular Bacterial Metabolites in Clostridium autoethanogenum Using Liquid Chromatography-Isotope Dilution Mass Spectrometry.},
author = {Safo L, Abdelrazig S, Grosse-Honebrink A, Millat T, Henstra AM, Norman R, Thomas NR, Winzer K, Minton NP, Kim DH, Barrett DA.},
journal = {ACS Omega},
year = {2021},
doi = {10.1021/acsomega.0c05588},
pmid = {34095647}
}
@article{lin99046,
title = {Deciphering the Regulation of the Mannitol Operon Paves the Way for Efficient Production of Mannitol in Lactococcus lactis.},
author = {Xiao H, Bang-Berthelsen CH, Jensen PR, Solem C.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.00779-21},
pmid = {34105983}
}
@article{lin100002,
title = {Diversity of the Tellurite Resistance Gene Operon in Escherichia coli.},
author = {Nguyen TTH, Kikuchi T, Tokunaga T, Iyoda S, Iguchi A.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.681175},
pmid = {34122392}
}
@article{lin99611,
title = {Clostridium acetobutylicum Biofilm: Advances in Understanding the Basis.},
author = {Zhang H, Yang P, Wang Z, Li M, Zhang J, Liu D, Chen Y, Ying H.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.658568},
pmid = {34150727}
}
@article{lin98985,
title = {Developing Clostridia as Cell Factories for Short- and Medium-Chain Ester Production.},
author = {Wang Q, Al Makishah NH, Li Q, Li Y, Liu W, Sun X, Wen Z, Yang S.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.661694},
pmid = {34164382}
}
@article{lin98976,
title = {Ribozyme-Mediated Downregulation Uncovers DNA Integrity Scanning Protein A (DisA) as a Solventogenesis Determinant in Clostridium beijerinckii.},
author = {Ujor VC, Lai LB, Okonkwo CC, Gopalan V, Ezeji TC.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.669462},
pmid = {34169065}
}
@article{lin99649,
title = {Metabolic engineering of Escherichia coli for de novo production of 3-phenylpropanol via retrobiosynthesis approach.},
author = {Liu Z, Zhang X, Lei D, Qiao B, Zhao GR.},
journal = {Microb Cell Fact},
year = {2021},
doi = {10.1186/s12934-021-01615-1},
pmid = {34176467}
}
@article{lin99802,
title = {Predicting Selective RNA Processing and Stabilization Operons in Clostridium spp.},
author = {Bhaskar Y, Su X, Xu C, Xu J.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.673349},
pmid = {34177856}
}
@article{lin98969,
title = {Acetate Kinase a Antisense Delivery by PAMAM Dendrimer for Decreasing Acetate Production and Increasing the Production of Recombinant Albumin in E. coli.},
author = {Ahangarzadeh S, Moghimi H, Bandehpour M, Ranjbari J.},
journal = {Iran J Biotechnol},
year = {2021},
doi = {10.30498/ijb.2021.2617},
pmid = {34179192}
}
@article{lin99925,
title = {On the diversity of F420 -dependent oxidoreductases: A sequence- and structure-based classification.},
author = {Mascotti ML, Juri Ayub M, Fraaije MW.},
journal = {Proteins},
year = {2021},
doi = {10.1002/prot.26170},
pmid = {34216160}
}
@article{lin98897,
title = {Bacterial Protein Interaction Networks: Connectivity is Ruled by Gene Conservation, Essentiality and Function.},
author = {Dilucca M, Cimini G, Giansanti A.},
journal = {Curr Genomics},
year = {2021},
doi = {10.2174/1389202922666210219110831},
pmid = {34220298}
}
@article{lin99822,
title = {HydG, the "dangler" iron, and catalytic production of free CO and CN-: implications for [FeFe]-hydrogenase maturation.},
author = {Shepard EM, Impano S, Duffus BR, Pagnier A, Duschene KS, Betz JN, Byer AS, Galambas A, McDaniel EC, Watts H, McGlynn SE, Peters JW, Broderick WE, Broderick JB.},
journal = {Dalton Trans},
year = {2021},
doi = {10.1039/d1dt01359a},
pmid = {34240096}
}
@article{lin99395,
title = {Responses of Clostridia to oxygen: from detoxification to adaptive strategies.},
author = {Morvan C, Folgosa F, Kint N, Teixeira M, Martin-Verstraete I.},
journal = {Environ Microbiol},
year = {2021},
doi = {10.1111/1462-2920.15665},
pmid = {34245087}
}
@article{lin99146,
title = {Expanded Diversity and Phylogeny of mer Genes Broadens Mercury Resistance Paradigms and Reveals an Origin for MerA Among Thermophilic Archaea.},
author = {Christakis CA, Barkay T, Boyd ES.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.682605},
pmid = {34248899}
}
@article{lin98947,
title = {Biodegradation of aromatic pollutants meets synthetic biology.},
author = {Xiang L, Li G, Wen L, Su C, Liu Y, Tang H, Dai J.},
journal = {Synth Syst Biotechnol},
year = {2021},
doi = {10.1016/j.synbio.2021.06.001},
pmid = {34278013}
}
@article{lin98935,
title = {Functional dissection and modulation of the BirA protein for improved autotrophic growth of gas-fermenting Clostridium ljungdahlii.},
author = {Zhang C, Nie X, Zhang H, Wu Y, He H, Yang C, Jiang W, Gu Y.},
journal = {Microb Biotechnol},
year = {2021},
doi = {10.1111/1751-7915.13884},
pmid = {34291572}
}
@article{lin99502,
title = {High Performance of Biohydrogen Production in Packed-Filter Bioreactor via Optimizing Packed-Filter Position.},
author = {Chu CY, Zheng JL, Chen TH, Bhuyar P.},
journal = {Int J Environ Res Public Health},
year = {2021},
doi = {10.3390/ijerph18147462},
pmid = {34299912}
}
@article{lin98883,
title = {Enforcing ATP hydrolysis enhanced anaerobic glycolysis and promoted solvent production in Clostridium acetobutylicum.},
author = {Dai Z, Zhu Y, Dong H, Zhao C, Zhang Y, Li Y.},
journal = {Microb Cell Fact},
year = {2021},
doi = {10.1186/s12934-021-01639-7},
pmid = {34325704}
}
@article{lin98879,
title = {Butyryl/Caproyl-CoA:Acetate CoA-transferase: cloning, expression and characterization of the key enzyme involved in medium-chain fatty acid biosynthesis.},
author = {Yang Q, Guo S, Lu Q, Tao Y, Zheng D, Zhou Q, Liu J.},
journal = {Biosci Rep},
year = {2021},
doi = {10.1042/bsr20211135},
pmid = {34338280}
}
@article{lin99918,
title = {In silico gene knockout prediction using a hybrid of Bat algorithm and minimization of metabolic adjustment.},
author = {Man MY, Mohamad MS, Choon YW, Ismail MA.},
journal = {J Integr Bioinform},
year = {2021},
doi = {10.1515/jib-2020-0037},
pmid = {34348418}
}
@article{lin99955,
title = {Exploring functionality of the reverse beta-oxidation pathway in Corynebacterium glutamicum for production of adipic acid.},
author = {Shin JH, Andersen AJC, Achterberg P, Olsson L.},
journal = {Microb Cell Fact},
year = {2021},
doi = {10.1186/s12934-021-01647-7},
pmid = {34348702}
}
@article{lin98999,
title = {The Role of Metabolic Engineering Technologies for the Production of Fatty Acids in Yeast.},
author = {Ullah N, Shahzad K, Wang M.},
journal = {Biology (Basel)},
year = {2021},
doi = {10.3390/biology10070632},
pmid = {34356487}
}
@article{lin98893,
title = {Molecular Mechanism of Microbiota Metabolites in Preterm Birth: Pathological and Therapeutic Insights.},
author = {Ansari A, Bose S, You Y, Park S, Kim Y.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22158145},
pmid = {34360908}
}
@article{lin99957,
title = {Non-Specific GH30_7 Endo-beta-1,4-xylanase from Talaromyces leycettanus.},
author = {Suchova K, Spodsberg N, Morkeberg Krogh KBR, Biely P, Puchart V.},
journal = {Molecules},
year = {2021},
doi = {10.3390/molecules26154614},
pmid = {34361767}
}
@article{lin99992,
title = {Adaptability of a Caproate-Producing Bacterium Contributes to Its Dominance in an Anaerobic Fermentation System.},
author = {Wang H, Gu Y, Zhou W, Zhao D, Qiao Z, Zheng J, Gao J, Chen X, Ren C, Xu Y.},
journal = {Appl Environ Microbiol},
year = {2021},
doi = {10.1128/aem.01203-21},
pmid = {34378978}
}
@article{lin99097,
title = {Construction of a sustainable 3-hydroxybutyrate-producing probiotic Escherichia coli for treatment of colitis.},
author = {Yan X, Liu XY, Zhang D, Zhang YD, Li ZH, Liu X, Wu F, Chen GQ.},
journal = {Cell Mol Immunol},
year = {2021},
doi = {10.1038/s41423-021-00760-2},
pmid = {34480146}
}
@article{lin99759,
title = {Direct and Indirect Reduction of Cr(VI) by Fermentative Fe(III)-Reducing Cellulomonas sp. Strain Cellu-2a.},
author = {Khanal A, Hur HG, Fredrickson JK, Lee JH.},
journal = {J Microbiol Biotechnol},
year = {2021},
doi = {10.4014/jmb.2107.07038},
pmid = {34489371}
}
@article{lin99393,
title = {Multiple strategies for metabolic engineering of Escherichia coli for efficient production of glycolate.},
author = {Zhu T, Yao D, Li D, Xu H, Jia S, Bi C, Cai J, Zhu X, Zhang X.},
journal = {Biotechnol Bioeng},
year = {2021},
doi = {10.1002/bit.27934},
pmid = {34491579}
}
@article{lin100007,
title = {Rapid Enabling of Gluconobacter oxydans Resistance to High D-Sorbitol Concentration and High Temperature by Microdroplet-Aided Adaptive Evolution.},
author = {Liu L, Zeng W, Yu S, Li J, Zhou J.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.731247},
pmid = {34540816}
}
@article{lin99941,
title = {Electrochemical control of [FeFe]-hydrogenase single crystals reveals complex redox populations at the catalytic site.},
author = {Morra S, Duan J, Winkler M, Ash PA, Happe T, Vincent KA.},
journal = {Dalton Trans},
year = {2021},
doi = {10.1039/d1dt02219a},
pmid = {34545877}
}
@article{lin99546,
title = {Atomic Force Microscopy to Elicit Conformational Transitions of Ferredoxin-Dependent Flavin Thioredoxin Reductases.},
author = {Marcuello C, Frempong GA, Balsera M, Medina M, Lostao A.},
journal = {Antioxidants (Basel)},
year = {2021},
doi = {10.3390/antiox10091437},
pmid = {34573070}
}
@article{lin99420,
title = {Crystal Structure and Molecular Mechanism of Phosphotransbutyrylase from Clostridium acetobutylicum.},
author = {Kim S, Kim KJ.},
journal = {J Microbiol Biotechnol},
year = {2021},
doi = {10.4014/jmb.2109.09036},
pmid = {34584034}
}
@article{lin99544,
title = {Management of microbial enzymes for biofuels and biogas production by using metagenomic and genome editing approaches.},
author = {Banu JR, Kumar G, Chattopadhyay I.},
journal = {3 Biotech},
year = {2021},
doi = {10.1007/s13205-021-02962-x},
pmid = {34603908}
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@article{lin99877,
title = {An Intervention With Michigan-Grown Wheat in Healthy Adult Humans to Determine Effect on Gut Microbiota: Protocol for a Crossover Trial.},
author = {Kinney GA, Haddad EN, Garrow LS, Ng PKW, Comstock SS.},
journal = {JMIR Res Protoc},
year = {2021},
doi = {10.2196/29046},
pmid = {34612840}
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@article{lin7204,
title = {Saccharification of lignocellulosic biomass using an enzymatic cocktail of fungal origin and successive production of butanol by Clostridium acetobutylicum.},
author = {Mondal S, Santra S, Rakshit S, Kumar Halder S, Hossain M, Chandra Mondal K},
journal = {Bioresour Technol},
year = {2021},
doi = {10.1016/j.biortech.2021.126093},
pmid = {34624476}
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@article{lin99971,
title = {Lignocellulosic Bioethanol and Biobutanol as a Biocomponent for Diesel Fuel.},
author = {Obergruber M, Honig V, Jencik J, Hajek J, Schlehofer D, Herink T.},
journal = {Materials (Basel)},
year = {2021},
doi = {10.3390/ma14195597},
pmid = {34639994}
}
@article{lin99931,
title = {Characterization of a highly xylose tolerant beta-xylosidase isolated from high temperature horse manure compost.},
author = {Ndata K, Nevondo W, Cekuse B, van Zyl LJ, Trindade M.},
journal = {BMC Biotechnol},
year = {2021},
doi = {10.1186/s12896-021-00722-6},
pmid = {34689773}
}
@article{lin99087,
title = {Handling Several Sugars at a Time: a Case Study of Xyloglucan Utilization by Ruminiclostridium cellulolyticum.},
author = {Kampik C, Liu N, Mroueh M, Franche N, Borne R, Denis Y, Gagnot S, Tardif C, Pages S, Perret S, Vita N, de Philip P, Fierobe HP.},
journal = {mBio},
year = {2021},
doi = {10.1128/mbio.02206-21},
pmid = {34749527}
}
@article{lin7203,
title = {Clostridium acetobutylicum atpG-Knockdown Mutants Increase Extracellular pH in Batch Cultures.},
author = {Jang YS, Seong HJ, Kwon SW, Lee YS, Im JA, Lee HL, Yoon YR, Lee SY},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.754250},
pmid = {34760879}
}
@article{lin99145,
title = {Versatile selective evolutionary pressure using synthetic defect in universal metabolism.},
author = {Selles Vidal L, Murray JW, Heap JT.},
journal = {Nat Commun},
year = {2021},
doi = {10.1038/s41467-021-27266-9},
pmid = {34824282}
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@article{lin99383,
title = {Anaerobic biobutanol production from black strap molasses using Clostridium acetobutylicum MTCC11274: Media engineering and kinetic analysis.},
author = {Iyyappan J, Bharathiraja B, Varjani S, PraveenKumar R, Muthu Kumar S.},
journal = {Bioresour Technol},
year = {2022},
doi = {10.1016/j.biortech.2021.126405},
pmid = {34826562}
}
@article{lin98881,
title = {Bioconversion of Lignocellulosic Biomass into Value Added Products under Anaerobic Conditions: Insight into Proteomic Studies.},
author = {Velez-Mercado MI, Talavera-Caro AG, Escobedo-Uribe KM, Sanchez-Munoz S, Luevanos-Escareno MP, Hernandez-Teran F, Alvarado A, Balagurusamy N.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms222212249},
pmid = {34830131}
}
@article{lin99985,
title = {Subgingival Microbiota and Cytokines Profile Changes in Patients with Periodontitis: A Pilot Study Comparing Healthy and Diseased Sites in the Same Oral Cavities.},
author = {Esparbes P, Legrand A, Bandiaky ON, Cheraud-Carpentier M, Martin H, Montassier E, Soueidan A.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9112364},
pmid = {34835489}
}
@article{lin99750,
title = {High methanol-to-formate ratios induce butanol production in Eubacterium limosum.},
author = {Wood JC, Marcellin E, Plan MR, Virdis B.},
journal = {Microb Biotechnol},
year = {2022},
doi = {10.1111/1751-7915.13963},
pmid = {34841673}
}
@article{lin99385,
title = {Transcriptomic studies of solventogenic clostridia, Clostridium acetobutylicum and Clostridium beijerinckii.},
author = {Patakova P, Branska B, Vasylkivska M, Jureckova K, Musilova J, Provaznik I, Sedlar K.},
journal = {Biotechnol Adv},
year = {2022},
doi = {10.1016/j.biotechadv.2021.107889},
pmid = {34929313}
}
@article{lin99075,
title = {Protein acetylation-mediated cross regulation of acetic acid and ethanol synthesis in the gas-fermenting Clostridium ljungdahlii.},
author = {Liu Y, Zhang Z, Jiang W, Gu Y.},
journal = {J Biol Chem},
year = {2022},
doi = {10.1016/j.jbc.2021.101538},
pmid = {34954142}
}
@article{lin99924,
title = {Inhibition of [FeFe]-hydrogenase by formaldehyde: proposed mechanism and reactivity of FeFe alkyl complexes.},
author = {Zhang F, Woods TJ, Zhu L, Rauchfuss TB.},
journal = {Chem Sci},
year = {2021},
doi = {10.1039/d1sc05803g},
pmid = {35003598}
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@article{lin99888,
title = {Characterization of the Tellurite-Resistance Properties and Identification of the Core Function Genes for Tellurite Resistance in Pseudomonas citronellolis SJTE-3.},
author = {Peng W, Wang Y, Fu Y, Deng Z, Lin S, Liang R.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10010095},
pmid = {35056544}
}
@article{lin99974,
title = {A Computational Framework to Identify Metabolic Engineering Strategies for the Co-Production of Metabolites.},
author = {Raajaraam L, Raman K.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.779405},
pmid = {35071202}
}
@article{lin99390,
title = {Engineering Acetobacterium woodii for the production of isopropanol and acetone from carbon dioxide and hydrogen.},
author = {Arslan K, Schoch T, Hofele F, Herrschaft S, Oberlies C, Bengelsdorf F, Veiga MC, Durre P, Kennes C.},
journal = {Biotechnol J},
year = {2022},
doi = {10.1002/biot.202100515},
pmid = {35077002}
}
@article{lin99386,
title = {Establishment of Green- and Red-Fluorescent Reporter Proteins Based on the Fluorescence-Activating and Absorption-Shifting Tag for Use in Acetogenic and Solventogenic Anaerobes.},
author = {Flaiz M, Baur T, Gaibler J, Kroly C, Durre P.},
journal = {ACS Synth Biol},
year = {2022},
doi = {10.1021/acssynbio.1c00554},
pmid = {35081709}
}
@article{lin99999,
title = {Anaerobically Digesting Hazardous Waste Pichia pastoris Associated with Butyric Acid Cleaner Production.},
author = {Cheng W, Chen X, Gong L, Wei J, Ding J, Shi Z.},
journal = {ACS Omega},
year = {2022},
doi = {10.1021/acsomega.1c05840},
pmid = {35097286}
}
@article{lin99787,
title = {Designing and Constructing a Novel Artificial Pathway for Malonic Acid Production Biologically.},
author = {Gu S, Zhao Z, Yao Y, Li J, Tian C.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.820507},
pmid = {35127677}
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@article{lin98895,
title = {Establishing Butyribacterium methylotrophicum as a Platform Organism for the Production of Biocommodities from Liquid C1 Metabolites.},
author = {Humphreys JR, Hebdon SD, Rohrer H, Magnusson L, Urban C, Chen YP, Lo J.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.02393-21},
pmid = {35138930}
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@article{lin99779,
title = {Delivering Therapeutics to Glioblastoma: Overcoming Biological Constraints.},
author = {Mathew EN, Berry BC, Yang HW, Carroll RS, Johnson MD.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms23031711},
pmid = {35163633}
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@article{lin99903,
title = {Gut microbiota-derived synbiotic formula (SIM01) as a novel adjuvant therapy for COVID-19: An open-label pilot study.},
author = {Zhang L, Xu Z, Mak JWY, Chow KM, Lui G, Li TCM, Wong CK, Chan PKS, Ching JYL, Fujiwara Y, Chan FKL, Ng SC.},
journal = {J Gastroenterol Hepatol},
year = {2022},
doi = {10.1111/jgh.15796},
pmid = {35170078}
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@article{lin99826,
title = {Biosynthesis of butyrate from methanol and carbon monoxide by recombinant Acetobacterium woodii.},
author = {Chowdhury NP, Litty D, Muller V.},
journal = {Int Microbiol},
year = {2022},
doi = {10.1007/s10123-022-00234-z},
pmid = {35179672}
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@article{lin100016,
title = {Functional and Structural Characterization of Diverse NfsB Chloramphenicol Reductase Enzymes from Human Pathogens.},
author = {Mullowney MW, Maltseva NI, Endres M, Kim Y, Joachimiak A, Crofts TS.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.00139-22},
pmid = {35195438}
}
@article{lin99989,
title = {Haemonchus contortus Infection Alters Gastrointestinal Microbial Community Composition, Protein Digestion and Amino Acid Allocations in Lambs.},
author = {Xiang H, Fang Y, Tan Z, Zhong R.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.797746},
pmid = {35222303}
}
@article{lin99963,
title = {Glucose/Xylose Co-Fermenting Saccharomyces cerevisiae Increases the Production of Acetyl-CoA Derived n-Butanol From Lignocellulosic Biomass.},
author = {Lee YJ, Hoang Nguyen Tran P, Ko JK, Gong G, Um Y, Han SO, Lee SM.},
journal = {Front Bioeng Biotechnol},
year = {2022},
doi = {10.3389/fbioe.2022.826787},
pmid = {35252135}
}
@article{lin99389,
title = {Post-hydrolysis of cellulose oligomers by cellulase immobilized on chitosan-grafted magnetic nanoparticles: A key stage of butanol production from waste textile.},
author = {Javid A, Amiri H, Kafrani AT, Rismani-Yazdi H.},
journal = {Int J Biol Macromol},
year = {2022},
doi = {10.1016/j.ijbiomac.2022.03.013},
pmid = {35259435}
}
@article{lin99849,
title = {Required Gene Set for Autotrophic Growth of Clostridium autoethanogenum.},
author = {Woods C, Humphreys CM, Tomi-Andrino C, Henstra AM, Kopke M, Simpson SD, Winzer K, Minton NP.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.02479-21},
pmid = {35285680}
}
@article{lin99720,
title = {Fantastic [FeFe]-Hydrogenases and Where to Find Them.},
author = {Morra S.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.853626},
pmid = {35308355}
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@article{lin99959,
title = {A Unique P450 Peroxygenase System Facilitated by a Dual-Functional Small Molecule: Concept, Application, and Perspective.},
author = {Di S, Fan S, Jiang F, Cong Z.},
journal = {Antioxidants (Basel)},
year = {2022},
doi = {10.3390/antiox11030529},
pmid = {35326179}
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@article{lin99009,
title = {Waste-Derived Fuels and Renewable Chemicals for Bioeconomy Promotion: A Sustainable Approach.},
author = {Narisetty V, R R, Maitra S, Tarafdar A, Alphy MP, Kumar AN, Madhavan A, Sirohi R, Awasthi MK, Sindhu R, Varjani S, Binod P.},
journal = {Bioenergy Res},
year = {2023},
doi = {10.1007/s12155-022-10428-y},
pmid = {35350609}
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@article{lin99008,
title = {Potential Role of the Host-Derived Cell-Wall Binding Domain of Endolysin CD16/50L as a Molecular Anchor in Preservation of Uninfected Clostridioides difficile for New Rounds of Phage Infection.},
author = {Phothichaisri W, Chankhamhaengdecha S, Janvilisri T, Nuadthaisong J, Phetruen T, Fagan RP, Chanarat S.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02361-21},
pmid = {35377223}
}
@article{lin99969,
title = {Enhancing biofuels production by engineering the actin cytoskeleton in Saccharomyces cerevisiae.},
author = {Liu H, Zhou P, Qi M, Guo L, Gao C, Hu G, Song W, Wu J, Chen X, Chen J, Chen W, Liu L.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-29560-6},
pmid = {35393407}
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@article{lin7202,
title = {Biodeinking of waste papers using combinatorial fungal enzymes and subsequent production of butanol from effluent.},
author = {Mondal S, Biswal D, Pal K, Rakshit S, Kumar Halder S, Mandavgane SA, Bera D, Hossain M, Chandra Mondal K},
journal = {Bioresour Technol},
year = {2022},
doi = {10.1016/j.biortech.2022.127078},
pmid = {35395367}
}
@article{lin99853,
title = {Increased NADPH Supply Enhances Glycolysis Metabolic Flux and L-methionine Production in Corynebacterium glutamicum.},
author = {Liu B, Sun X, Liu Y, Yang M, Wang L, Li Y, Wang J.},
journal = {Foods},
year = {2022},
doi = {10.3390/foods11071031},
pmid = {35407118}
}
@article{lin7201,
title = {Genome-Wide TSS Distribution in Three Related Clostridia with Normalized Capp-Switch Sequencing.},
author = {Hocq R, Jagtap S, Boutard M, Tolonen AC, Duval L, Pirayre A, Lopes Ferreira N, Wasels F},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02288-21},
pmid = {35412381}
}
@article{lin99927,
title = {Three Orphan Histidine Kinases Inhibit Clostridioides difficile Sporulation.},
author = {Edwards AN, Wetzel D, DiCandia MA, McBride SM.},
journal = {J Bacteriol},
year = {2022},
doi = {10.1128/jb.00106-22},
pmid = {35416689}
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@article{lin99976,
title = {Mechanism of the feedback-inhibition resistance in aspartate kinase of Corynebacterium pekinense: from experiment to MD simulations.},
author = {Liu X, Han C, Fang L, Fan Z, Wang Y, Gao X, Shi J, Min W.},
journal = {RSC Adv},
year = {2020},
doi = {10.1039/d0ra09153g},
pmid = {35423034}
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@article{lin99951,
title = {Rifaximin Ameliorates Non-alcoholic Steatohepatitis in Mice Through Regulating gut Microbiome-Related Bile Acids.},
author = {Jian J, Nie MT, Xiang B, Qian H, Yin C, Zhang X, Zhang M, Zhu X, Xie WF.},
journal = {Front Pharmacol},
year = {2022},
doi = {10.3389/fphar.2022.841132},
pmid = {35450049}
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@article{lin99455,
title = {Coproduction and enhancement of electricity and biobutanol using adsorption carrier solid-state fermentation.},
author = {Feng X, Wang L, Chen H.},
journal = {Biotechnol Biofuels Bioprod},
year = {2022},
doi = {10.1186/s13068-022-02138-6},
pmid = {35501839}
}
@article{lin98898,
title = {Effect of lignocellulose-derived weak acids on butanol production by Clostridium acetobutylicum under different pH adjustment conditions.},
author = {Wang J, Yang H, Qi G, Liu X, Gao X, Shen Y.},
journal = {RSC Adv},
year = {2019},
doi = {10.1039/c8ra08678h},
pmid = {35516100}
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@article{lin7223,
title = {Co-production of solvents and organic acids in butanol fermentation by Clostridium acetobutylicum in the presence of lignin-derived phenolics.},
author = {Luo H, Zheng P, Xie F, Yang R, Liu L, Han S, Zhao Y, Bilal M},
journal = {RSC Adv},
year = {2019},
doi = {10.1039/c9ra00325h},
pmid = {35518483}
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@article{lin100022,
title = {Enhancing fluxes through the mevalonate pathway in Saccharomyces cerevisiae by engineering the HMGR and beta-alanine metabolism.},
author = {Lu S, Zhou C, Guo X, Du Z, Cheng Y, Wang Z, He X.},
journal = {Microb Biotechnol},
year = {2022},
doi = {10.1111/1751-7915.14072},
pmid = {35531990}
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@article{lin99099,
title = {Efficient bioconversion of furfural to furfuryl alcohol by Bacillus coagulans NL01.},
author = {Yan Y, Bu C, He Q, Zheng Z, Ouyang J.},
journal = {RSC Adv},
year = {2018},
doi = {10.1039/c8ra05098h},
pmid = {35541055}
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@article{lin99732,
title = {Integrated omics approach to unveil antifungal bacterial polyynes as acetyl-CoA acetyltransferase inhibitors.},
author = {Lin CC, Hoo SY, Ma LT, Lin C, Huang KF, Ho YN, Sun CH, Lee HJ, Chen PY, Shu LJ, Wang BW, Hsu WC, Ko TP, Yang YL.},
journal = {Commun Biol},
year = {2022},
doi = {10.1038/s42003-022-03409-6},
pmid = {35551233}
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@article{lin99739,
title = {Butanol-isopropanol fermentation with oxygen-tolerant Clostridium beijerinckii XH29.},
author = {Yao X, Zhang Q, Fan Y, Xu X, Liu Z.},
journal = {AMB Express},
year = {2022},
doi = {10.1186/s13568-022-01399-6},
pmid = {35567691}
}
@article{lin98804,
title = {Impact of Fungal Hyphae on Growth and Dispersal of Obligate Anaerobic Bacteria in Aerated Habitats.},
author = {Xiong BJ, Kleinsteuber S, Strauber H, Dusny C, Harms H, Wick LY.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.00769-22},
pmid = {35638736}
}
@article{lin99671,
title = {Engineering nonphotosynthetic carbon fixation for production of bioplastics by methanogenic archaea.},
author = {Thevasundaram K, Gallagher JJ, Cherng F, Chang MCY.},
journal = {Proc Natl Acad Sci U S A},
year = {2022},
doi = {10.1073/pnas.2118638119},
pmid = {35639688}
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@article{lin99050,
title = {Characteristics and Application of Rhodopseudomonas palustris as a Microbial Cell Factory.},
author = {Li M, Ning P, Sun Y, Luo J, Yang J.},
journal = {Front Bioeng Biotechnol},
year = {2022},
doi = {10.3389/fbioe.2022.897003},
pmid = {35646843}
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@article{lin99476,
title = {A site-differentiated [4Fe-4S] cluster controls electron transfer reactivity of Clostridium acetobutylicum [FeFe]-hydrogenase I.},
author = {Lubner CE, Artz JH, Mulder DW, Oza A, Ward RJ, Williams SG, Jones AK, Peters JW, Smalyukh II, Bharadwaj VS, King PW.},
journal = {Chem Sci},
year = {2022},
doi = {10.1039/d1sc07120c},
pmid = {35656134}
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@article{lin99387,
title = {A clean in-frame knockout system for gene deletion in Acetobacterium woodii.},
author = {Baker JP, Saez-Saez J, Jensen SI, Nielsen AT, Minton NP.},
journal = {J Biotechnol},
year = {2022},
doi = {10.1016/j.jbiotec.2022.05.013},
pmid = {35659892}
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@article{lin99929,
title = {Post-transcriptional control of bacterial nitrogen metabolism by regulatory noncoding RNAs.},
author = {Han Y, Li C, Yan Y, Lin M, Ke X, Zhang Y, Zhan Y.},
journal = {World J Microbiol Biotechnol},
year = {2022},
doi = {10.1007/s11274-022-03287-4},
pmid = {35666348}
}
@article{lin98922,
title = {High-throughput colorimetric assays optimized for detection of ketones and aldehydes produced by microbial cell factories.},
author = {Kozaeva E, Mol V, Nikel PI, Nielsen AT.},
journal = {Microb Biotechnol},
year = {2022},
doi = {10.1111/1751-7915.14097},
pmid = {35689383}
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@article{lin99570,
title = {A thermophilic 8-oxoguanine DNA glycosylase from Thermococcus barophilus Ch5 is a new member of AGOG DNA glycosylase family},
author = {Wang L, Jiang D, Zhang L.},
journal = {Acta Biochim Biophys Sin (Shanghai)},
year = {2022},
doi = {10.3724/abbs.2022072},
pmid = {35713316}
}
@article{lin98862,
title = {Oxidoreduction potential controlling for increasing the fermentability of enzymatically hydrolyzed steam-exploded corn stover for butanol production.},
author = {Xia M, Wang D, Xia Y, Shi H, Tian Z, Zheng Y, Wang M.},
journal = {Microb Cell Fact},
year = {2022},
doi = {10.1186/s12934-022-01824-2},
pmid = {35761287}
}
@article{lin100011,
title = {Akkermansia muciniphila Alters Gut Microbiota and Immune System to Improve Cardiovascular Diseases in Murine Model.},
author = {He X, Bai Y, Zhou H, Wu K.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.906920},
pmid = {35774450}
}
@article{lin99953,
title = {Engineering plant family TPS into cyanobacterial host for terpenoids production.},
author = {Rautela A, Kumar S.},
journal = {Plant Cell Rep},
year = {2022},
doi = {10.1007/s00299-022-02892-9},
pmid = {35789422}
}
@article{lin99618,
title = {Comparative Transcriptome Analysis of Shewanella putrefaciens WS13 Biofilms Under Cold Stress.},
author = {Yan J, Yang Z, Xie J.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.851521},
pmid = {35811677}
}
@article{lin99895,
title = {Transcript Profiling of Nitroxoline-Treated Biofilms Shows Rapid Up-regulation of Iron Acquisition Gene Clusters.},
author = {Liu K, Abouelhassan Y, Zhang Y, Jin S, Huigens Iii RW.},
journal = {ACS Infect Dis},
year = {2022},
doi = {10.1021/acsinfecdis.2c00206},
pmid = {35830188}
}
@article{lin99813,
title = {A hybrid of Bees algorithm and regulatory on/off minimization for optimizing lactate and succinate production.},
author = {Yong MI, Mohamad MS, Choon YW, Chan WH, Adli HK, Syazwan Wsw KN, Yusoff N, Remli MA.},
journal = {J Integr Bioinform},
year = {2022},
doi = {10.1515/jib-2022-0003},
pmid = {35852123}
}
@article{lin99950,
title = {Characterization of Putative Sporulation and Germination Genes in Clostridium perfringens Food-Poisoning Strain SM101.},
author = {Talukdar PK, Sarker MR.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10081481},
pmid = {35893539}
}
@article{lin99595,
title = {Decoding the roles of extremophilic microbes in the anaerobic environments: Past, Present, and Future.},
author = {Patidar P, Prakash T.},
journal = {Curr Res Microb Sci},
year = {2022},
doi = {10.1016/j.crmicr.2022.100146},
pmid = {35909618}
}
@article{lin99382,
title = {An NADPH-auxotrophic Corynebacterium glutamicum recombinant strain and used it to construct L-leucine high-yielding strain.},
author = {Chen SL, Liu TS, Zhang WG, Xu JZ.},
journal = {Int Microbiol},
year = {2023},
doi = {10.1007/s10123-022-00270-9},
pmid = {35925494}
}
@article{lin98858,
title = {Molecular characterization of the missing electron pathways for butanol synthesis in Clostridium acetobutylicum.},
author = {Foulquier C, Riviere A, Heulot M, Dos Reis S, Perdu C, Girbal L, Pinault M, Dusseaux S, Yoo M, Soucaille P, Meynial-Salles I.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-32269-1},
pmid = {35948538}
}
@article{lin99852,
title = {Unveiling the mechanisms and biosynthesis of a novel nickel-pincer enzyme.},
author = {Chatterjee S, Gatreddi S, Gupta S, Nevarez JL, Rankin JA, Turmo A, Hu J, Hausinger RP.},
journal = {Biochem Soc Trans},
year = {2022},
doi = {10.1042/bst20220490},
pmid = {35960008}
}
@article{lin99946,
title = {Epicuticular wax of sweet sorghum influenced the microbial community and fermentation quality of silage.},
author = {Tang W, Liao L, Xiao Y, Zhai J, Su H, Chen Y, Guo Y.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.960857},
pmid = {35966662}
}
@article{lin98942,
title = {Acetogenic production of 3-Hydroxybutyrate using a native 3-Hydroxybutyryl-CoA Dehydrogenase.},
author = {Lo J, Humphreys JR, Magnusson L, Wachter B, Urban C, Hebdon SD, Xiong W, Chou KJ, Ching Maness P.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.948369},
pmid = {36003933}
}
@article{lin99378,
title = {High-rate continuous n-butanol production by Clostridium acetobutylicum from glucose and butyric acid in a single-pass fibrous-bed bioreactor.},
author = {Chang WL, Hou W, Xu M, Yang ST.},
journal = {Biotechnol Bioeng},
year = {2022},
doi = {10.1002/bit.28223},
pmid = {36059064}
}
@article{lin98871,
title = {The potential of caproate (hexanoate) production using Clostridium kluyveri syntrophic cocultures with Clostridium acetobutylicum or Clostridium saccharolyticum.},
author = {Otten JK, Zou Y, Papoutsakis ET.},
journal = {Front Bioeng Biotechnol},
year = {2022},
doi = {10.3389/fbioe.2022.965614},
pmid = {36072287}
}
@article{lin99843,
title = {Physiological changes and growth behavior of Corynebacterium glutamicum cells in biofilm.},
author = {Zhang D, Shen J, Peng X, Gao S, Wang Z, Zhang H, Sun W, Niu H, Ying H, Zhu C, Chen Y, Liu D.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.983545},
pmid = {36110303}
}
@article{lin98864,
title = {Current progress on engineering microbial strains and consortia for production of cellulosic butanol through consolidated bioprocessing.},
author = {Re A, Mazzoli R.},
journal = {Microb Biotechnol},
year = {2023},
doi = {10.1111/1751-7915.14148},
pmid = {36168663}
}
@article{lin99884,
title = {Microbial containment device: A platform for comprehensive analysis of microbial metabolism without sample preparation.},
author = {Mohammadi M, Bishop SL, Aburashed R, Luqman S, Groves RA, Bihan DG, Rydzak T, Lewis IA.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.958785},
pmid = {36177472}
}
@article{lin99799,
title = {Propionate Attenuates Growth of Oral Streptococci through Enhancing Methionine Biosynthesis.},
author = {Park T, Im J, Kim AR, Lee D, Jeong S, Yun CH, Han SH.},
journal = {J Microbiol Biotechnol},
year = {2022},
doi = {10.4014/jmb.2205.05037},
pmid = {36198670}
}
@article{lin99873,
title = {The Contribution of Proton-Donor pKa on Reactivity Profiles of [FeFe]-hydrogenases.},
author = {Kisgeropoulos EC, Bharadwaj VS, Mulder DW, King PW.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.903951},
pmid = {36246213}
}
@article{lin99381,
title = {Biobutanol production from sustainable biomass process of anaerobic ABE fermentation for industrial applications.},
author = {Riaz S, Mazhar S, Abidi SH, Syed Q, Abbas N, Saleem Y, Nadeem AA, Maryam M, Essa R, Ashfaq S.},
journal = {Arch Microbiol},
year = {2022},
doi = {10.1007/s00203-022-03284-z},
pmid = {36251102}
}
@article{lin99972,
title = {One-year supplementation with Lactobacillus reuteri ATCC PTA 6475 counteracts a degradation of gut microbiota in older women with low bone mineral density.},
author = {Li P, Ji B, Luo H, Sundh D, Lorentzon M, Nielsen J.},
journal = {NPJ Biofilms Microbiomes},
year = {2022},
doi = {10.1038/s41522-022-00348-2},
pmid = {36261538}
}
@article{lin99002,
title = {Heterologous Gene Regulation in Clostridia: Rationally Designed Gene Regulation for Industrial and Medical Applications.},
author = {Zhang Y, Bailey TS, Kubiak AM, Lambin P, Theys J.},
journal = {ACS Synth Biol},
year = {2022},
doi = {10.1021/acssynbio.2c00401},
pmid = {36265075}
}
@article{lin99834,
title = {Production of fructan synthesis/hydrolysis of endophytic bacteria involved in inulin production in Jerusalem artichoke.},
author = {Khamwan S, Boonlue S, Mongkolthanaruk W.},
journal = {3 Biotech},
year = {2022},
doi = {10.1007/s13205-022-03374-1},
pmid = {36276462}
}
@article{lin99820,
title = {CcpA Regulates Staphylococcus aureus Biofilm Formation through Direct Repression of Staphylokinase Expression.},
author = {Zheng M, Zhu K, Peng H, Shang W, Zhao Y, Lu S, Rao X, Li M, Zhou R, Li G.},
journal = {Antibiotics (Basel)},
year = {2022},
doi = {10.3390/antibiotics11101426},
pmid = {36290085}
}
@article{lin98993,
title = {The Physiological Functions of AbrB on Sporulation, Biofilm Formation and Carbon Source Utilization in Clostridium tyrobutyricum.},
author = {Luo K, Guo X, Zhang H, Fu H, Wang J.},
journal = {Bioengineering (Basel)},
year = {2022},
doi = {10.3390/bioengineering9100575},
pmid = {36290543}
}
@article{lin99860,
title = {PEBA/PDMS Composite Multilayer Hollow Fiber Membranes for the Selective Separation of Butanol by Pervaporation.},
author = {Arregoitia-Sarabia C, Gonzalez-Revuelta D, Fallanza M, Ortiz A, Gorri D.},
journal = {Membranes (Basel)},
year = {2022},
doi = {10.3390/membranes12101007},
pmid = {36295765}
}
@article{lin99952,
title = {How does Quorum Sensing of Intestinal Bacteria Affect Our Health and Mental Status?},
author = {Dicks LMT.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10101969},
pmid = {36296244}
}
@article{lin99921,
title = {Phages Shape Microbial Dynamics and Metabolism of a Model Community Mimicking Cider, a Fermented Beverage.},
author = {Ledormand P, Desmasures N, Schlusselhuber M, Sesboue A, Ledauphin J, Dalmasso M.},
journal = {Viruses},
year = {2022},
doi = {10.3390/v14102283},
pmid = {36298838}
}
@article{lin99916,
title = {A Novel Inovirus Reprograms Metabolism and Motility of Marine Alteromonas.},
author = {Jia K, Peng Y, Chen X, Jian H, Jin M, Yi Z, Su M, Dong X, Yi M.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.03388-22},
pmid = {36301121}
}
@article{lin99913,
title = {Deriving and Using Descriptors of Elementary Functions in Rational Protein Design.},
author = {Yin M, Goncearenco A, Berezovsky IN.},
journal = {Front Bioinform},
year = {2021},
doi = {10.3389/fbinf.2021.657529},
pmid = {36303771}
}
@article{lin99815,
title = {Valorization of agricultural wastes for biofuel applications.},
author = {Awogbemi O, Kallon DVV.},
journal = {Heliyon},
year = {2022},
doi = {10.1016/j.heliyon.2022.e11117},
pmid = {36303926}
}
@article{lin98945,
title = {Reliable and Scalable Identification and Prioritization of Putative Cellulolytic Anaerobes With Large Genome Data.},
author = {Wang Y, Li L, Xia Y, Zhang T.},
journal = {Front Bioinform},
year = {2022},
doi = {10.3389/fbinf.2022.813771},
pmid = {36304268}
}
@article{lin98978,
title = {Biosynthesis of value-added bioproducts from hemicellulose of biomass through microbial metabolic engineering.},
author = {Geng B, Jia X, Peng X, Han Y.},
journal = {Metab Eng Commun},
year = {2022},
doi = {10.1016/j.mec.2022.e00211},
pmid = {36311477}
}
@article{lin98870,
title = {synDNA-a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing.},
author = {Zaramela LS, Tjuanta M, Moyne O, Neal M, Zengler K.},
journal = {mSystems},
year = {2022},
doi = {10.1128/msystems.00447-22},
pmid = {36317886}
}
@article{lin99862,
title = {Type I fimbriae subunit fimA enhances Escherichia coli biofilm formation but affects L-threonine carbon distribution.},
author = {Liu Q, Zhu J, Liu N, Sun W, Yu B, Niu H, Liu D, Ouyang P, Ying H, Chen Y, Zhao G, Chen T.},
journal = {Front Bioeng Biotechnol},
year = {2022},
doi = {10.3389/fbioe.2022.904636},
pmid = {36338119}
}
@article{lin98868,
title = {Synthetic metabolism for in vitro acetone biosynthesis driven by ATP regeneration.},
author = {Kozaeva E, Nieto-Dominguez M, Hernandez AD, Nikel PI.},
journal = {RSC Chem Biol},
year = {2022},
doi = {10.1039/d2cb00170e},
pmid = {36349222}
}
@article{lin98808,
title = {Processing of Biomass Prior to Hydrogen Fermentation and Post-Fermentative Broth Management.},
author = {Honarmandrad Z, Kucharska K, Gebicki J.},
journal = {Molecules},
year = {2022},
doi = {10.3390/molecules27217658},
pmid = {36364485}
}
@article{lin99034,
title = {Light-driven biocatalytic oxidation.},
author = {Yun CH, Kim J, Hollmann F, Park CB.},
journal = {Chem Sci},
year = {2022},
doi = {10.1039/d2sc03483b},
pmid = {36382294}
}
@article{lin99626,
title = {Metabolic engineering of Clostridium autoethanogenum for ethyl acetate production from CO.},
author = {Dykstra JC, van Oort J, Yazdi AT, Vossen E, Patinios C, van der Oost J, Sousa DZ, Kengen SWM.},
journal = {Microb Cell Fact},
year = {2022},
doi = {10.1186/s12934-022-01964-5},
pmid = {36419165}
}
@article{lin99909,
title = {First Report and Comparative Genomic Analysis of Mycoplasma capricolum subsp. capricolum HN-B in Hainan Island, China.},
author = {Zhang Z, He M, Jiang J, Li X, Li H, Zhang W, Chen S, Du L, Man C, Chen Q, Gao H, Wang F.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10112298},
pmid = {36422368}
}
@article{lin99961,
title = {Tuning of Gene Expression in Clostridium phytofermentans Using Synthetic Promoters and CRISPRi.},
author = {Rostain W, Zaplana T, Boutard M, Baum C, Tabuteau S, Sanitha M, Ramya M, Guss A, Ettwiller L, Tolonen AC.},
journal = {ACS Synth Biol},
year = {2022},
doi = {10.1021/acssynbio.2c00385},
pmid = {36427328}
}
@article{lin99539,
title = {Design of artificial small regulatory trans-RNA for gene knockdown in Bacillus subtilis.},
author = {Yin G, Peng A, Zhang L, Wang Y, Du G, Chen J, Kang Z.},
journal = {Synth Syst Biotechnol},
year = {2023},
doi = {10.1016/j.synbio.2022.11.003},
pmid = {36474928}
}
@article{lin99017,
title = {Microbial detoxification of lignocellulosic biomass hydrolysates: Biochemical and molecular aspects, challenges, exploits and future perspectives.},
author = {Ujor VC, Okonkwo CC.},
journal = {Front Bioeng Biotechnol},
year = {2022},
doi = {10.3389/fbioe.2022.1061667},
pmid = {36483774}
}
@article{lin98863,
title = {Bioinformatics and metabolic flux analysis highlight a new mechanism involved in lactate oxidation in Clostridium tyrobutyricum.},
author = {Munier E, Licandro H, Beuvier E, Cachon R.},
journal = {Int Microbiol},
year = {2023},
doi = {10.1007/s10123-022-00316-y},
pmid = {36609955}
}
@article{lin99697,
title = {The Acinetobacter baumannii model can explain the role of small non-coding RNAs as potential mediators of host-pathogen interactions.},
author = {Sarshar M, Scribano D, Palamara AT, Ambrosi C, Masotti A.},
journal = {Front Mol Biosci},
year = {2022},
doi = {10.3389/fmolb.2022.1088783},
pmid = {36619166}
}
@article{lin98884,
title = {Model-driven approach for the production of butyrate from CO2/H2 by a novel co-culture of C. autoethanogenum and C. beijerinckii.},
author = {Benito-Vaquerizo S, Nouse N, Schaap PJ, Hugenholtz J, Brul S, Lopez-Contreras AM, Martins Dos Santos VAP, Suarez-Diez M.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1064013},
pmid = {36620068}
}
@article{lin98860,
title = {Single and multiplexed gene repression in solventogenic Clostridium via Cas12a-based CRISPR interference.},
author = {Joseph RC, Sandoval NR.},
journal = {Synth Syst Biotechnol},
year = {2023},
doi = {10.1016/j.synbio.2022.12.005},
pmid = {36687471}
}
@article{lin99892,
title = {In Vivo Genome Editing in Type I and II Methanotrophs Using a CRISPR/Cas9 System.},
author = {Rumah BL, Claxton Stevens BH, Yeboah JE, Stead CE, Harding EL, Minton NP, Zhang Y.},
journal = {ACS Synth Biol},
year = {2023},
doi = {10.1021/acssynbio.2c00554},
pmid = {36688528}
}
@article{lin99023,
title = {Clostridium beijerinckii strain degeneration is driven by the loss of Spo0A activity.},
author = {Humphreys JR, Debebe BJ, Diggle SP, Winzer K.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1075609},
pmid = {36704551}
}
@article{lin99829,
title = {Conversion of lignocellulosic biomass: Production of bioethanol and bioelectricity using wheat straw hydrolysate in electrochemical bioreactor.},
author = {Shrivastava A, Sharma RK.},
journal = {Heliyon},
year = {2023},
doi = {10.1016/j.heliyon.2023.e12951},
pmid = {36711303}
}
@article{lin99388,
title = {Construction of a Microbial Consortium for the De Novo Synthesis of Butyl Butyrate from Renewable Resources.},
author = {Lu J, Jiang W, Dong W, Zhou J, Zhang W, Jiang Y, Xin F, Jiang M.},
journal = {J Agric Food Chem},
year = {2023},
doi = {10.1021/acs.jafc.2c07650},
pmid = {36734010}
}
@article{lin99810,
title = {Growth-uncoupled propanediol production in a Thermoanaerobacterium thermosaccharolyticum strain engineered for high ethanol yield.},
author = {Herring CD, Ajie MP, Lynd LR.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-29220-9},
pmid = {36765076}
}
@article{lin99889,
title = {Structural and Biochemical Analyses of the Butanol Dehydrogenase from Fusobacterium nucleatum.},
author = {Bai X, Lan J, He S, Bu T, Zhang J, Wang L, Jin X, Mao Y, Guan W, Zhang L, Lu M, Piao H, Jo I, Quan C, Nam KH, Xu Y.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24032994},
pmid = {36769315}
}
@article{lin98820,
title = {Hydrogenase and Nitrogenase: Key Catalysts in Biohydrogen Production.},
author = {Xuan J, He L, Wen W, Feng Y.},
journal = {Molecules},
year = {2023},
doi = {10.3390/molecules28031392},
pmid = {36771068}
}
@article{lin98795,
title = {Alleviation of Carbon Catabolite Repression through araR and xylR Inactivation in Clostridium acetobutylicum DSM 792.},
author = {Delarouzee A, Lopes Ferreira N, Wasels F.},
journal = {Appl Environ Microbiol},
year = {2023},
doi = {10.1128/aem.02135-22},
pmid = {36779716}
}
@article{lin99887,
title = {Marine Fungi Select and Transport Aerobic and Anaerobic Bacterial Populations from Polycyclic Aromatic Hydrocarbon-Contaminated Sediments.},
author = {Alvarez-Barragan J, Cravo-Laureau C, Xiong B, Wick LY, Duran R.},
journal = {mBio},
year = {2023},
doi = {10.1128/mbio.02761-22},
pmid = {36786561}
}
@article{lin98798,
title = {Developing a genetic engineering method for Acetobacterium wieringae to expand one-carbon valorization pathways.},
author = {Moreira JPC, Heap JT, Alves JI, Domingues L.},
journal = {Biotechnol Biofuels Bioprod},
year = {2023},
doi = {10.1186/s13068-023-02259-6},
pmid = {36788587}
}
@article{lin99486,
title = {Antisense-acting riboswitches: A poorly characterized yet important model of transcriptional regulation in prokaryotic organisms.},
author = {Serrano-Gutierrez M, Merino E.},
journal = {PLoS One},
year = {2023},
doi = {10.1371/journal.pone.0281744},
pmid = {36809273}
}
@article{lin99817,
title = {Formate as a supplementary substrate facilitates sugar metabolism and solvent production by Clostridium beijerinckii NCIMB 8052.},
author = {Zhao R, Dong W, Yang C, Jiang W, Tian J, Gu Y.},
journal = {Synth Syst Biotechnol},
year = {2023},
doi = {10.1016/j.synbio.2023.01.005},
pmid = {36824491}
}
@article{lin99687,
title = {In vivo implementation of a synthetic metabolic pathway for the carbon-conserving conversion of glycolaldehyde to acetyl-CoA.},
author = {Wagner N, Bade F, Straube E, Rabe K, Frazao CJR, Walther T.},
journal = {Front Bioeng Biotechnol},
year = {2023},
doi = {10.3389/fbioe.2023.1125544},
pmid = {36845174}
}
@article{lin99723,
title = {Contribution of preoperative gut microbiota in postoperative neurocognitive dysfunction in elderly patients undergoing orthopedic surgery.},
author = {Bi J, Xu Y, Li S, Zhan G, Hua D, Tan J, Chi X, Xiang H, Guo F, Luo A.},
journal = {Front Aging Neurosci},
year = {2023},
doi = {10.3389/fnagi.2023.1108205},
pmid = {36875700}
}
@article{lin98932,
title = {Large-Scale Identification of Known and Novel RRNPP Quorum-Sensing Systems by RRNPP_Detector Captures Novel Features of Bacterial, Plasmidic, and Viral Coevolution.},
author = {Bernard C, Li Y, Lopez P, Bapteste E.},
journal = {Mol Biol Evol},
year = {2023},
doi = {10.1093/molbev/msad062},
pmid = {36929912}
}
@article{lin99837,
title = {Binding of exogenous cyanide reveals new active-site states in [FeFe] hydrogenases.},
author = {Martini MA, Bikbaev K, Pang Y, Lorent C, Wiemann C, Breuer N, Zebger I, DeBeer S, Span I, Bjornsson R, Birrell JA, Rodriguez-Macia P.},
journal = {Chem Sci},
year = {2023},
doi = {10.1039/d2sc06098a},
pmid = {36937599}
}
@article{lin99857,
title = {Thermodynamic and Kinetic Modeling Directs Pathway Optimization for Isopropanol Production in a Gas-Fermenting Bacterium.},
author = {Lo J, Wu C, Humphreys JR, Yang B, Jiang Z, Wang X, Maness P, Tsesmetzis N, Xiong W.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.01274-22},
pmid = {36971551}
}
@article{lin99640,
title = {Heterologous 1,3-Propanediol Production Using Different Recombinant Clostridium beijerinckii DSM 6423 Strains.},
author = {Schoch T, Baur T, Kunz J, Stoferle S, Durre P.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11030784},
pmid = {36985357}
}
@article{lin99842,
title = {Identification of a Thermostable Levansucrase from Pseudomonas orientalis That Allows Unique Product Specificity at Different Temperatures.},
author = {Guang C, Zhang X, Ni D, Zhang W, Xu W, Mu W.},
journal = {Polymers (Basel)},
year = {2023},
doi = {10.3390/polym15061435},
pmid = {36987215}
}
@article{lin99968,
title = {Toward a synthetic hydrogen sensor in cyanobacteria: Functional production of an oxygen-tolerant regulatory hydrogenase in Synechocystis sp. PCC 6803.},
author = {Opel F, Itzenhauser MA, Wehner I, Lupacchini S, Lauterbach L, Lenz O, Klahn S.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1122078},
pmid = {37032909}
}
@article{lin99914,
title = {HicA Toxin-Based Counterselection Marker for Allelic Exchange Mutations in Fusobacterium nucleatum.},
author = {Gc B, Zhou P, Wu C.},
journal = {Appl Environ Microbiol},
year = {2023},
doi = {10.1128/aem.00091-23},
pmid = {37039662}
}
@article{lin99870,
title = {Biofilm-Based Biocatalysis for Galactooligosaccharides Production by the Surface Display of beta-Galactosidase in Pichia pastoris.},
author = {Chen T, Wang S, Niu H, Yang G, Wang S, Wang Y, Zhou C, Yu B, Yang P, Sun W, Liu D, Ying H, Chen Y.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24076507},
pmid = {37047479}
}
@article{lin98846,
title = {Efforts to install a heterologous Wood-Ljungdahl pathway in Clostridium acetobutylicum enable the identification of the native tetrahydrofolate (THF) cycle and result in early induction of solvents.},
author = {Jang YS, Kim WJ, Im JA, Palaniswamy S, Yao Z, Lee HL, Yoon YR, Seong HJ, Papoutsakis ET, Lee SY.},
journal = {Metab Eng},
year = {2023},
doi = {10.1016/j.ymben.2023.04.005},
pmid = {37054966}
}
@article{lin99458,
title = {Long-term follow-up of colorectal cancer screening attendees identifies differences in Phascolarctobacterium spp. using 16S rRNA and metagenome sequencing.},
author = {Bucher-Johannessen C, Birkeland EE, Vinberg E, Bemanian V, Hoff G, Berstad P, Rounge TB.},
journal = {Front Oncol},
year = {2023},
doi = {10.3389/fonc.2023.1183039},
pmid = {37182146}
}
@article{lin98845,
title = {Enhancement of biohydrogen production in Clostridium acetobutylicum ATCC 824 by overexpression of glyceraldehyde-3-phosphate dehydrogenase gene.},
author = {Kim SH, Hwang JH, Kim HJ, Oh SJ, Kim HJ, Shin N, Kim SH, Park JH, Bhatia SK, Yang YH.},
journal = {Enzyme Microb Technol},
year = {2023},
doi = {10.1016/j.enzmictec.2023.110244},
pmid = {37196383}
}
@article{lin99565,
title = {Engineering a Phosphoketolase Pathway to Supplement Cytosolic Acetyl-CoA in Aspergillus niger Enables a Significant Increase in Citric Acid Production.},
author = {Liu J, Zhang S, Li W, Wang G, Xie Z, Cao W, Gao W, Liu H.},
journal = {J Fungi (Basel)},
year = {2023},
doi = {10.3390/jof9050504},
pmid = {37233215}
}
@article{lin99513,
title = {Differential Binding of NLRP3 to non-oxidized and Ox-mtDNA mediates NLRP3 Inflammasome Activation.},
author = {Cabral A, Cabral JE, Wang A, Zhang Y, Liang H, Nikbakht D, Corona L, Hoffman HM, McNulty R.},
journal = {Commun Biol},
year = {2023},
doi = {10.1038/s42003-023-04817-y},
pmid = {37253813}
}
@article{lin99495,
title = {A (S)-3-Hydroxybutyrate Dehydrogenase Belonging to the 3-Hydroxyacyl-CoA Dehydrogenase Family Facilitates Hydroxyacid Degradation in Anaerobic Bacteria.},
author = {Zhou Y, Wei Y, Jiang L, Zhang Y, Jiao X.},
journal = {Appl Environ Microbiol},
year = {2023},
doi = {10.1128/aem.00366-23},
pmid = {37255440}
}
@article{lin99681,
title = {Exploitation of a Type 1 Toxin-Antitoxin System as an Inducible Counter-Selective Marker for Genome Editing in the Acetogen Eubacterium limosum.},
author = {Millard J, Agius A, Zhang Y, Soucaille P, Minton NP.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11051256},
pmid = {37317230}
}
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title = {An artificial coculture fermentation system for industrial propanol production.},
author = {Hocq R, Sauer M.},
journal = {FEMS Microbes},
year = {2022},
doi = {10.1093/femsmc/xtac013},
pmid = {37332505}
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@article{lin98852,
title = {The Lanthipeptide Synthetase-like Protein CA_C0082 Is an Effector of Agr Quorum Sensing in Clostridium acetobutylicum.},
author = {Humphreys JR, Bean Z, Twycross J, Winzer K.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11061460},
pmid = {37374961}
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@article{lin99436,
title = {Exploring the Influence of pH on the Dynamics of Acetone-Butanol-Ethanol Fermentation.},
author = {Kumar M, Saini S, Gayen K.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11061610},
pmid = {37375111}
}
@article{lin99936,
title = {Stem-loop structures control mRNA processing of the cellulosomal cip-cel operon in Ruminiclostridium cellulolyticum.},
author = {Wang N, Li P, Cheng Y, Song H, Xu C.},
journal = {Biotechnol Biofuels Bioprod},
year = {2023},
doi = {10.1186/s13068-023-02357-5},
pmid = {37386549}
}
@article{lin99408,
title = {Application of a Synthetic Ferredoxin-Inspired [4Fe4S]-Peptide Maquette as the Redox Partner for an [FeFe]-Hydrogenase.},
author = {Bombana A, Shanmugam M, Collison D, Kibler AJ, Newton GN, Jager CM, Croft AK, Morra S, Mitchell NJ.},
journal = {Chembiochem},
year = {2023},
doi = {10.1002/cbic.202300250},
pmid = {37391388}
}
@article{lin98800,
title = {Chromosomal engineering of inducible isopropanol- butanol-ethanol production in Clostridium acetobutylicum.},
author = {Omorotionmwan BB, Wang H, Baker JP, Gizynski K, Yoo M, Akaluka C, Zhang Y, Minton NP.},
journal = {Front Bioeng Biotechnol},
year = {2023},
doi = {10.3389/fbioe.2023.1218099},
pmid = {37397966}
}
@article{lin98874,
title = {Characterization of Hsp17, a Novel Small Heat Shock Protein, in Sphingomonas melonis TY under Heat Stress.},
author = {Wang Y, Wang X, Wu H, Wang L, Wang H, Lu Z.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.01360-23},
pmid = {37436164}
}
@article{lin99754,
title = {Dietary fiber modulates gut microbiome and metabolome in a host sex-specific manner in a murine model of aging.},
author = {Kadyan S, Park G, Wang B, Nagpal R.},
journal = {Front Mol Biosci},
year = {2023},
doi = {10.3389/fmolb.2023.1182643},
pmid = {37457834}
}
@article{lin99788,
title = {A fluorescent reporter system for anaerobic thermophiles.},
author = {Hocq R, Bottone S, Gautier A, Pflugl S.},
journal = {Front Bioeng Biotechnol},
year = {2023},
doi = {10.3389/fbioe.2023.1226889},
pmid = {37476481}
}
@article{lin99748,
title = {Separation of n-Butanol from Aqueous Solutions via Pervaporation Using PDMS/ZIF-8 Mixed-Matrix Membranes of Different Particle Sizes.},
author = {Zamani A, Thibault J, Tezel FH.},
journal = {Membranes (Basel)},
year = {2023},
doi = {10.3390/membranes13070632},
pmid = {37504998}
}
@article{lin98989,
title = {Uncultured Microorganisms and Their Functions in the Fermentation Systems of Traditional Chinese Fermented Foods.},
author = {Wang J, Hao S, Ren Q.},
journal = {Foods},
year = {2023},
doi = {10.3390/foods12142691},
pmid = {37509783}
}
@article{lin98972,
title = {Enhancing 1,3-Propanediol Productivity in the Non-Model Chassis Clostridium beijerinckii through Genetic Manipulation.},
author = {Bortolucci J, Guazzaroni ME, Schoch T, Durre P, Reginatto V.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11071855},
pmid = {37513028}
}
@article{lin99629,
title = {Hacking the Immune Response to Solid Tumors: Harnessing the Anti-Cancer Capacities of Oncolytic Bacteria.},
author = {Roe JM, Seely K, Bussard CJ, Eischen Martin E, Mouw EG, Bayles KW, Hollingsworth MA, Brooks AE, Dailey KM.},
journal = {Pharmaceutics},
year = {2023},
doi = {10.3390/pharmaceutics15072004},
pmid = {37514190}
}
@article{lin98850,
title = {Utilization of lignocellulosic biomass by glycerol organosolv pretreatment for biobutanol production integrated with bioconversion of residual glycerol into value-added products.},
author = {Luo H, Zhou T, Cao J, Gao L, Wang S, Gui Z, Shi Y, Xie F, Yang R.},
journal = {Bioresour Technol},
year = {2023},
doi = {10.1016/j.biortech.2023.129661},
pmid = {37573976}
}
@article{lin99525,
title = {Carbohydrate quality, fecal microbiota and cardiometabolic health in older adults: a cohort study.},
author = {Atzeni A, Nishi SK, Babio N, Belzer C, Konstanti P, Vioque J, Corella D, Castaner O, Vidal J, Moreno-Indias I, Torres-Collado L, Asensio EM, Fito M, Gomez-Perez AM, Arias A, Ruiz-Canela M, Hu FB, Tinahones FJ, Salas-Salvado J.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2246185},
pmid = {37610130}
}
@article{lin98961,
title = {Pleiotropic Regulator GssR Positively Regulates Autotrophic Growth of Gas-Fermenting Clostridium ljungdahlii.},
author = {Zhang H, Zhang C, Nie X, Wu Y, Yang C, Jiang W, Gu Y.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11081968},
pmid = {37630531}
}
@article{lin99797,
title = {Butyrate enhances Clostridioides difficile sporulation in vitro.},
author = {Baldassare MA, Bhattacharjee D, Coles JD, Nelson S, McCollum CA, Seekatz AM.},
journal = {J Bacteriol},
year = {2023},
doi = {10.1128/jb.00138-23},
pmid = {37655912}
}
@article{lin99473,
title = {Composition and functional profiles of gut microbiota reflect the treatment stage, severity, and etiology of acute pancreatitis.},
author = {Wang Z, Guo M, Li J, Jiang C, Yang S, Zheng S, Li M, Ai X, Xu X, Zhang W, He X, Wang Y, Chen Y.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.00829-23},
pmid = {37698429}
}
@article{lin98851,
title = {Mathematical modeling of ABE fermentation on glucose substrate with Zn supplementation for enhanced butanol production.},
author = {Chalhoub E, Nassar N, Hawly M, Belovich JM.},
journal = {Arch Biochem Biophys},
year = {2023},
doi = {10.1016/j.abb.2023.109765},
pmid = {37757907}
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@article{lin99855,
title = {Whole-Genome Sequence and Fermentation Characteristics of Enterobacter hormaechei UW0SKVC1: A Promising Candidate for Detoxification of Lignocellulosic Biomass Hydrolysates and Production of Value-Added Chemicals.},
author = {Kumar S, Agyeman-Duah E, Ujor VC.},
journal = {Bioengineering (Basel)},
year = {2023},
doi = {10.3390/bioengineering10091090},
pmid = {37760192}
}
@article{lin99173,
title = {Solvent-Producing Clostridia Revisited.},
author = {Jones DT, Schulz F, Roux S, Brown SD.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11092253},
pmid = {37764097}
}
@article{lin98872,
title = {Total Synthesis of Clostrienose.},
author = {Takahashi S, Hama T, Nogawa T, Ogawa N, Koshino H.},
journal = {ACS Omega},
year = {2023},
doi = {10.1021/acsomega.3c05277},
pmid = {37779990}
}
@article{lin368950,
title = {Strongyloides stercoralis infection reduces Fusicatenibacter and Anaerostipes in the gut and increases bacterial amino-acid metabolism in early-stage chronic kidney disease.},
author = {Tran NTD, Chaidee A, Surapinit A, Yingklang M, Roytrakul S, Charoenlappanit S, Pinlaor P, Hongsrichan N, Nguyen Thi H, Anutrakulchai S, Cha'on U, Pinlaor S.},
journal = {Heliyon},
year = {2023},
doi = {10.1016/j.heliyon.2023.e19859},
pmid = {37809389}
}
@article{lin99942,
title = {Unexpected metabolic rewiring of CO2 fixation in H2-mediated materials-biology hybrids.},
author = {Xie Y, Ersan S, Guan X, Wang J, Sha J, Xu S, Wohlschlegel JA, Park JO, Liu C.},
journal = {Proc Natl Acad Sci U S A},
year = {2023},
doi = {10.1073/pnas.2308373120},
pmid = {37816063}
}
@article{lin98882,
title = {Metabolic engineering of Thermoanaerobacterium aotearoense strain SCUT27 for biofuels production from sucrose and molasses.},
author = {Dai K, Qu C, Feng J, Lan Y, Fu H, Wang J.},
journal = {Biotechnol Biofuels Bioprod},
year = {2023},
doi = {10.1186/s13068-023-02402-3},
pmid = {37865803}
}
@article{lin99944,
title = {Refined control of CRISPR-Cas9 gene editing in Clostridium sporogenes: the creation of recombinant strains for therapeutic applications.},
author = {Kubiak AM, Claessen L, Zhang Y, Khazaie K, Bailey TS.},
journal = {Front Immunol},
year = {2023},
doi = {10.3389/fimmu.2023.1241632},
pmid = {37869009}
}
@article{lin98905,
title = {Validating a Xylose Regulator to Increase Polyhydroxybutyrate Production for Utilizing Mixed Sugars from Lignocellulosic Biomass Using Escherichia coli.},
author = {Oh SJ, Lee HJ, Hwang JH, Kim HJ, Shin N, Lee SH, Seo SO, Bhatia SK, Yang YH.},
journal = {J Microbiol Biotechnol},
year = {2024},
doi = {10.4014/jmb.2306.06006},
pmid = {37919866}
}
@article{lin98805,
title = {CRISPR-Cas technology secures sustainability through its applications: a review in green biotechnology.},
author = {Matinvafa MA, Makani S, Parsasharif N, Zahed MA, Movahed E, Ghiasvand S.},
journal = {3 Biotech},
year = {2023},
doi = {10.1007/s13205-023-03786-7},
pmid = {37920190}
}
@article{lin98848,
title = {Model construction and theoretical evaluation of the performance improvement of acetone-butanol-ethanol extractive fermentation by adding surfactant.},
author = {Wang S, Wang J, Gui Z, Liu L, Xu S, Guo Y, Zhou T, Cao J, Gao R, Xie F, He A, Luo H.},
journal = {Bioprocess Biosyst Eng},
year = {2023},
doi = {10.1007/s00449-023-02942-w},
pmid = {37924351}
}
@article{lin99734,
title = {Anaerobic fluorescent reporters for live imaging of Pseudomonas aeruginosa.},
author = {Tchagang CF, Mah TF, Campbell-Valois FX.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1245755},
pmid = {37928662}
}
@article{lin99995,
title = {Analysis of viromes and microbiomes from pig fecal samples reveals that phages and prophages rarely carry antibiotic resistance genes.},
author = {Billaud M, Lamy-Besnier Q, Lossouarn J, Moncaut E, Dion MB, Moineau S, Traore F, Le Chatelier E, Denis C, Estelle J, Achard C, Zemb O, Petit MA.},
journal = {ISME Commun},
year = {2021},
doi = {10.1038/s43705-021-00054-8},
pmid = {37938642}
}
@article{lin99832,
title = {Short-chain fatty acid producers in the gut are associated with pediatric multiple sclerosis onset.},
author = {Schoeps VA, Zhou X, Horton MK, Zhu F, McCauley KE, Nasr Z, Nasr Z, Virupakshaiah A, Gorman MP, Benson LA, Weinstock-Guttman B, Waldman A, Banwell BL, Bar-Or A, Marrie RA, van Domselaar G, O'Mahony J, Mirza AI, Bernstein CN, Yeh EA, Casper TC, Lynch SV, Tremlett H, Baranzini S, Waubant E, US Network of Pediatric MS Centers.},
journal = {Ann Clin Transl Neurol},
year = {2024},
doi = {10.1002/acn3.51944},
pmid = {37955284}
}
@article{lin99576,
title = {Characterization and Description of the Fecal Microbiomes of Pet Domestic Ferrets (Mustela putorius furo) Living in Homes.},
author = {Scarsella E, Fay JS, Jospin G, Jarett JK, Entrolezo Z, Ganz HH.},
journal = {Animals (Basel)},
year = {2023},
doi = {10.3390/ani13213354},
pmid = {37958109}
}
@article{lin98797,
title = {Design and validation of a multiplex PCR method for the simultaneous quantification of Clostridium acetobutylicum, Clostridium carboxidivorans and Clostridium cellulovorans.},
author = {Feliu-Paradeda L, Puig S, Baneras L.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-47007-w},
pmid = {37973932}
}
@article{lin99828,
title = {Optimization of trans-4-hydroxyproline synthesis pathway by rearrangement center carbon metabolism in Escherichia coli.},
author = {Gong Y, Wang R, Ma L, Wang S, Li C, Xu Q.},
journal = {Microb Cell Fact},
year = {2023},
doi = {10.1186/s12934-023-02236-6},
pmid = {37986164}
}
@article{lin99372,
title = {Improvement of the Genome Editing Tools Based on 5FC/5FU Counter Selection in Clostridium acetobutylicum.},
author = {Boudignon E, Foulquier C, Soucaille P.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11112696},
pmid = {38004708}
}
@article{lin99885,
title = {Making the connections: physical and electric interactions in biohybrid photosynthetic systems.},
author = {Yang Y, Liu LN, Tian H, Cooper AI, Sprick RS.},
journal = {Energy Environ Sci},
year = {2023},
doi = {10.1039/d3ee01265d},
pmid = {38013927}
}
@article{lin368949,
title = {Advance of tolerance engineering on microbes for industrial production.},
author = {Gao S, Liao Y, He H, Yang H, Yang X, Xu S, Wang X, Chen K, Ouyang P.},
journal = {Synth Syst Biotechnol},
year = {2023},
doi = {10.1016/j.synbio.2023.10.004},
pmid = {38025766}
}
@article{lin99536,
title = {Microbial Upcycling of Waste PET to Adipic Acid.},
author = {Valenzuela-Ortega M, Suitor JT, White MFM, Hinchcliffe T, Wallace S.},
journal = {ACS Cent Sci},
year = {2023},
doi = {10.1021/acscentsci.3c00414},
pmid = {38033806}
}
@article{lin99948,
title = {Establishing genetic manipulation for novel strains of human gut bacteria.},
author = {Sheridan PO, Odat MA, Scott KP.},
journal = {Microbiome Res Rep},
year = {2023},
doi = {10.20517/mrr.2022.13},
pmid = {38059211}
}
@article{lin99461,
title = {Insights into lignocellulose degradation: comparative genomics of anaerobic and cellulolytic Ruminiclostridium-type species.},
author = {You M, Zhao Q, Liu Y, Zhang W, Shen Z, Ren Z, Xu C.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1288286},
pmid = {38075893}
}
@article{lin99710,
title = {NADH-based kinetic model for acetone-butanol-ethanol production by Clostridium.},
author = {Quintero-Diaz JC, Mendoza DF, Avignone-Rossa C.},
journal = {Front Bioeng Biotechnol},
year = {2023},
doi = {10.3389/fbioe.2023.1294355},
pmid = {38076419}
}
@article{lin99858,
title = {Relative Activities of the beta-ketoacyl-CoA and Acyl-CoA Reductases Influence Product Profile and Flux in a Reversed beta-Oxidation Pathway.},
author = {Courtney DK, Su Y, Jacobson T, Khana D, Ailiani A, Amador-Noguez D, Pfleger BF.},
journal = {ACS Catal},
year = {2023},
doi = {10.1021/acscatal.3c00379},
pmid = {38094510}
}
@article{lin98925,
title = {Genetic tools for the electrotroph Sporomusa ovata and autotrophic biosynthesis.},
author = {Tremblay P-L, Zhang T.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.01757-23},
pmid = {38117058}
}
@article{lin99875,
title = {Region-Directed Enzyme Immobilization through Engineering Protein Surface with Histidine Clusters.},
author = {Zeballos N, Comino N, Andres-Sanz D, Santiago-Arcos J, Azkargorta M, Elortza F, Diamanti E, Lopez-Gallego F.},
journal = {ACS Appl Mater Interfaces},
year = {2024},
doi = {10.1021/acsami.3c15993},
pmid = {38135284}
}
@article{lin99996,
title = {Tuning Fatty Acid Profile and Yield in Pichia pastoris.},
author = {Kobalter S, Voit A, Bekerle-Bogner M, Rudalija H, Haas A, Wriessnegger T, Pichler H.},
journal = {Bioengineering (Basel)},
year = {2023},
doi = {10.3390/bioengineering10121412},
pmid = {38136003}
}
@article{lin98948,
title = {The Restriction-Modification Systems of Clostridium carboxidivorans P7.},
author = {Kottenhahn P, Philipps G, Bunk B, Sproer C, Jennewein S.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms11122962},
pmid = {38138106}
}
@article{lin99442,
title = {Methanol bioconversion into C3, C4, and C5 platform chemicals by the yeast Ogataea polymorpha.},
author = {Wefelmeier K, Schmitz S, Kosters BJ, Liebal UW, Blank LM.},
journal = {Microb Cell Fact},
year = {2024},
doi = {10.1186/s12934-023-02283-z},
pmid = {38172830}
}
@article{lin99910,
title = {Broad Chain-Length Specificity of the Alkane-Forming Enzymes NoCER1A and NoCER3A/B in Nymphaea odorata.},
author = {Kojima H, Yamamoto K, Suzuki T, Hayakawa Y, Niwa T, Tokuhiro K, Katahira S, Higashiyama T, Ishiguro S.},
journal = {Plant Cell Physiol},
year = {2024},
doi = {10.1093/pcp/pcad168},
pmid = {38174441}
}
@article{lin98923,
title = {Minimal aromatic aldehyde reduction (MARE) yeast platform for engineering vanillin production.},
author = {Mo Q, Yuan J.},
journal = {Biotechnol Biofuels Bioprod},
year = {2024},
doi = {10.1186/s13068-023-02454-5},
pmid = {38184607}
}
@article{lin99590,
title = {Optimizing Hexose Utilization Pathways of Cupriavidus necator for Improving Growth and L-Alanine Production under Heterotrophic and Autotrophic Conditions.},
author = {Wang L, Luo H, Yao B, Yao J, Zhang J.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms25010548},
pmid = {38203719}
}
@article{lin98861,
title = {DNA transfer between two different species mediated by heterologous cell fusion in Clostridium coculture.},
author = {Charubin K, Hill JD, Papoutsakis ET.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.03133-23},
pmid = {38214507}
}
@article{lin98799,
title = {New insights into the influence of pre-culture on robust solvent production of C. acetobutylicum.},
author = {Oehlenschlager K, Volkmar M, Stiefelmaier J, Langsdorf A, Holtmann D, Tippkotter N, Ulber R.},
journal = {Appl Microbiol Biotechnol},
year = {2024},
doi = {10.1007/s00253-023-12981-8},
pmid = {38231267}
}
@article{lin99986,
title = {Enzymatic degradation of cellulose in soil: A review.},
author = {Datta R.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e24022},
pmid = {38234915}
}
@article{lin98844,
title = {Positive effect of phasin in biohydrogen production of non polyhydroxybutyrate-producing Clostridium acetobutylicum ATCC 824.},
author = {Hwang JH, Kim HJ, Kim S, Lee Y, Shin Y, Choi S, Oh J, Kim SH, Park JH, Bhatia SK, Kim YG, Jang KS, Yang YH.},
journal = {Bioresour Technol},
year = {2024},
doi = {10.1016/j.biortech.2024.130355},
pmid = {38272145}
}
@article{lin99738,
title = {The Mutation of the DNA-Binding Domain of Fur Protein Enhances the Pathogenicity of Edwardsiella piscicida via Inducing Overpowering Pyroptosis.},
author = {Niu M, Sui Z, Jiang G, Wang L, Yao X, Hu Y.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms12010011},
pmid = {38276180}
}
@article{lin99498,
title = {Lipid membrane remodeling and metabolic response during isobutanol and ethanol exposure in Zymomonas mobilis.},
author = {Rivera Vazquez J, Trujillo E, Williams J, She F, Getahun F, Callaghan MM, Coon JJ, Amador-Noguez D.},
journal = {Biotechnol Biofuels Bioprod},
year = {2024},
doi = {10.1186/s13068-023-02450-9},
pmid = {38281959}
}
@article{lin98853,
title = {Genetic disruption of the bacterial raiA motif noncoding RNA causes defects in sporulation and aggregation.},
author = {Soares LW, King CG, Fernando CM, Roth A, Breaker RR.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2318008121},
pmid = {38306478}
}
@article{lin99975,
title = {Characterizing the flavodoxin landscape in Clostridioides difficile.},
author = {Troitzsch D, Knop R, Dittmann S, Bartel J, Zuhlke D, Moller TA, Tran L, Echelmeyer T, Sievers S.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.01895-23},
pmid = {38319052}
}
@article{lin98918,
title = {Transcriptional regulation of cellobiose utilization by PRD-domain containing Sigma54-dependent transcriptional activator (CelR) and catabolite control protein A (CcpA) in Bacillus thuringiensis.},
author = {Zhang L, Xu H, Cheng H, Song F, Zhang J, Peng Q.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1160472},
pmid = {38357353}
}
@article{lin98955,
title = {A comprehensive review of microbial fuel cells considering materials, methods, structures, and microorganisms.},
author = {Jalili P, Ala A, Nazari P, Jalili B, Ganji DD.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e25439},
pmid = {38371992}
}
@article{lin99935,
title = {Probing efficient microbial CO2 utilisation through metabolic and process modelling.},
author = {Gorter de Vries PJ, Mol V, Sonnenschein N, Jensen TO, Nielsen AT.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.14414},
pmid = {38380934}
}
@article{lin99769,
title = {Analysis of heterologous expression of phaCBA promotes the acetoin stress response mechanism in Bacillus subtilis using transcriptomics and metabolomics approaches.},
author = {Li T, Li H, Zhong L, Qin Y, Guo G, Liu Z, Hao N, Ouyang P.},
journal = {Microb Cell Fact},
year = {2024},
doi = {10.1186/s12934-024-02334-z},
pmid = {38383407}
}
@article{lin99704,
title = {Clostridium strain FAM25158, a unique endospore-forming bacterium related to Clostridium tyrobutyricum and isolated from Emmental cheese shows low tolerance to salt.},
author = {Princic L, Burtscher J, Sacken P, Krajnc T, Domig KJ.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1353321},
pmid = {38414773}
}
@article{lin99594,
title = {Functional analysis of feedback inhibition-insensitive aspartate kinase identified in a threonine-accumulating mutant of Saccharomyces cerevisiae.},
author = {Isogai S, Nishimura A, Inoue A, Sonohara S, Tsugukuni T, Okada T, Takagi H.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.00155-24},
pmid = {38456673}
}
@article{lin98875,
title = {The impact of orphan histidine kinases and phosphotransfer proteins on the regulation of clostridial sporulation initiation.},
author = {Mehdizadeh Gohari I, Edwards AN, McBride SM, McClane BA.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.02248-23},
pmid = {38477571}
}
@article{lin99422,
title = {Effects of Salmonella Typhimurium Infection on the Gut Microbiota of Cherry Valley Meat Ducks.},
author = {Zheng Y, Pan X, Hou J, Shi W, Sun S, Song M, Gao Z.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12030602},
pmid = {38543653}
}
@article{lin99371,
title = {Development of inducible promoters for regulating gene expression in Clostridium tyrobutyricum for biobutanol production.},
author = {Feng J, Wang Q, Qin Z, Guo X, Fu H, Yang ST, Wang J.},
journal = {Biotechnol Bioeng},
year = {2024},
doi = {10.1002/bit.28701},
pmid = {38548678}
}
@article{lin98802,
title = {Municipal green waste as substrate for the microbial production of platform chemicals.},
author = {Volkmar M, Maus AL, Weisbrodt M, Bohlender J, Langsdorf A, Holtmann D, Ulber R.},
journal = {Bioresour Bioprocess},
year = {2023},
doi = {10.1186/s40643-023-00663-2},
pmid = {38647939}
}
@article{lin98902,
title = {Ferulic acid production by metabolically engineered Escherichia coli.},
author = {Lv H, Zhang Y, Shao J, Liu H, Wang Y.},
journal = {Bioresour Bioprocess},
year = {2021},
doi = {10.1186/s40643-021-00423-0},
pmid = {38650224}
}
@article{lin99125,
title = {Pectinolytic lyases: a comprehensive review of sources, category, property, structure, and catalytic mechanism of pectate lyases and pectin lyases.},
author = {Zheng L, Xu Y, Li Q, Zhu B.},
journal = {Bioresour Bioprocess},
year = {2021},
doi = {10.1186/s40643-021-00432-z},
pmid = {38650254}
}
@article{lin99662,
title = {Multiplex genetic manipulations in Clostridium butyricum and Clostridium sporogenes to secrete recombinant antigen proteins for oral-spore vaccination.},
author = {Zhang Y, Bailey TS, Hittmeyer P, Dubois LJ, Theys J, Lambin P.},
journal = {Microb Cell Fact},
year = {2024},
doi = {10.1186/s12934-024-02389-y},
pmid = {38659027}
}
@article{lin99757,
title = {Ribosome Pool Engineering Increases Protein Biosynthesis Yields.},
author = {Kofman C, Willi JA, Karim AS, Jewett MC.},
journal = {ACS Cent Sci},
year = {2024},
doi = {10.1021/acscentsci.3c01413},
pmid = {38680563}
}
@article{lin99659,
title = {Development of a group II intron-based genetic manipulation tool for Streptomyces.},
author = {Sang Z, Li X, Yan H, Wang W, Wen Y.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.14472},
pmid = {38683679}
}
@article{lin99804,
title = {Functional domains of Acinetobacter bacteriophage tail fibers.},
author = {Peters DL, Gaudreault F, Chen W.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1230997},
pmid = {38690360}
}
@article{lin99614,
title = {To analyze the relationship between gut microbiota, metabolites and migraine: a two-sample Mendelian randomization study.},
author = {Qu K, Li MX, Gan L, Cui ZT, Li JJ, Yang R, Dong M.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1325047},
pmid = {38690367}
}
@article{lin98873,
title = {Phylogenomics and genetic analysis of solvent-producing Clostridium species.},
author = {Jensen RO, Schulz F, Roux S, Klingeman DM, Mitchell WP, Udwary D, Morais S, Reynoso V, Winkler J, Nagaraju S, De Tissera S, Shapiro N, Ivanova N, Reddy TBK, Mizrahi I, Utturkar SM, Bayer EA, Woyke T, Mouncey NJ, Jewett MC, Simpson SD, Kopke M, Jones DT, Brown SD.},
journal = {Sci Data},
year = {2024},
doi = {10.1038/s41597-024-03210-6},
pmid = {38693191}
}
@article{lin99607,
title = {Fangyukangsuan granules ameliorate hyperuricemia and modulate gut microbiota in rats.},
author = {Zhang QZ, Zhang JR, Li X, Yin JL, Jin LM, Xun ZR, Xue H, Yang WQ, Zhang H, Qu J, Xing ZK, Wang XM.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1362642},
pmid = {38745649}
}
@article{lin99652,
title = {Nonelectroactive clostridium obtains extracellular electron transfer-capability after forming chimera with Geobacter.},
author = {Liu X, Ye Y, Yang N, Cheng C, Rensing C, Jin C, Nealson KH, Zhou S.},
journal = {ISME Commun},
year = {2024},
doi = {10.1093/ismeco/ycae058},
pmid = {38770058}
}
@article{lin99532,
title = {One-Pot Biosynthesis of Acetone from Waste Poly(hydroxybutyrate).},
author = {Armijo-Galdames BO, Sadler JC.},
journal = {ACS Sustain Chem Eng},
year = {2024},
doi = {10.1021/acssuschemeng.4c00357},
pmid = {38783840}
}
@article{lin99713,
title = {Global soil metagenomics reveals distribution and predominance of Deltaproteobacteria in nitrogen-fixing microbiome.},
author = {Masuda Y, Mise K, Xu Z, Zhang Z, Shiratori Y, Senoo K, Itoh H.},
journal = {Microbiome},
year = {2024},
doi = {10.1186/s40168-024-01812-1},
pmid = {38790049}
}
@article{lin99737,
title = {Impact of Vanadium-Titanium-Magnetite Mining Activities on Endophytic Bacterial Communities and Functions in the Root Systems of Local Plants.},
author = {Xiong Z, Zhang Y, Chen X, Sha A, Xiao W, Luo Y, Peng L, Zou L, Li Q.},
journal = {Genes (Basel)},
year = {2024},
doi = {10.3390/genes15050526},
pmid = {38790155}
}
@article{lin99657,
title = {Multiple Cofactor Engineering Strategies to Enhance Pyridoxine Production in Escherichia coli.},
author = {Wu L, Li J, Zhang Y, Tian Z, Jin Z, Liu L, Zhang D.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12050933},
pmid = {38792763}
}
@article{lin98793,
title = {Gene essentiality in the solventogenic Clostridium acetobutylicum DSM 792.},
author = {Delarouzee A, Lopes Ferreira N, Baum C, Wasels F.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.00282-24},
pmid = {38864631}
}
@article{lin98854,
title = {Chromosomal integration of the pSOL1 megaplasmid of Clostridium acetobutylicum for continuous and stable advanced biofuels production.},
author = {Ehsaan M, Yoo M, Kuit W, Foulquier C, Soucaille P, Minton NP.},
journal = {Nat Microbiol},
year = {2024},
doi = {10.1038/s41564-024-01714-w},
pmid = {38877224}
}
@article{lin99762,
title = {Modulation of riboflavin biosynthesis and utilization in mycobacteria.},
author = {Chengalroyen MD, Mehaffy C, Lucas M, Bauer N, Raphela ML, Oketade N, Warner DF, Lewinsohn DA, Lewinsohn DM, Dobos KM, Mizrahi V.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.03207-23},
pmid = {38916330}
}
@article{lin98920,
title = {Multiple variants of the type VII secretion system in Gram-positive bacteria.},
author = {Garrett SR, Higginson AB, Palmer T.},
journal = {Microlife},
year = {2024},
doi = {10.1093/femsml/uqae013},
pmid = {38957458}
}
@article{lin368986,
title = {Engineering of bespoke photosensitiser-microbe interfaces for enhanced semi-artificial photosynthesis.},
author = {Bishara Robertson IL, Zhang H, Reisner E, Butt JN, Jeuken LJC.},
journal = {Chem Sci},
year = {2024},
doi = {10.1039/d4sc00864b},
pmid = {38966358}
}
@article{lin99966,
title = {Dual genetic level modification engineering accelerate genome evolution of Corynebacterium glutamicum.},
author = {Wang Q, Zhang J, Zhao Z, Li Y, You J, Wang Y, Li X, Xu M, Rao Z.},
journal = {Nucleic Acids Res},
year = {2024},
doi = {10.1093/nar/gkae577},
pmid = {38967005}
}
@article{lin98880,
title = {Biobutanol production from underutilized substrates using Clostridium: Unlocking untapped potential for sustainable energy development.},
author = {Nabila DS, Chan R, Syamsuri RRP, Nurlilasari P, Wan-Mohtar WAAQI, Ozturk AB, Rossiana N, Doni F.},
journal = {Curr Res Microb Sci},
year = {2024},
doi = {10.1016/j.crmicr.2024.100250},
pmid = {38974669}
}
@article{lin99882,
title = {Structural idiosyncrasies of glycyl T-box riboswitches among pathogenic bacteria.},
author = {Giarimoglou N, Kouvela A, Zhang J, Stamatopoulou V, Stathopoulos C.},
journal = {RNA},
year = {2024},
doi = {10.1261/rna.080071.124},
pmid = {38981655}
}
@article{lin99812,
title = {Complete list of canonical post-transcriptional modifications in the Bacillus subtilis ribosome and their link to RbgA driven large subunit assembly.},
author = {Popova AM, Jain N, Dong X, Abdollah-Nia F, Britton RA, Williamson JR.},
journal = {Nucleic Acids Res},
year = {2024},
doi = {10.1093/nar/gkae626},
pmid = {39036956}
}
@article{lin99742,
title = {Lactate-mediated mixotrophic co-cultivation of Clostridium drakei and recombinant Acetobacterium woodii for autotrophic production of volatile fatty acids.},
author = {Mook A, Herzog J, Walther P, Durre P, Bengelsdorf FR.},
journal = {Microb Cell Fact},
year = {2024},
doi = {10.1186/s12934-024-02481-3},
pmid = {39061103}
}
@article{lin99678,
title = {The Effect of Technological Conditions on ABE Fermentation and Butanol Production of Rye Straw and the Composition of Volatile Compounds.},
author = {Dziemianowicz W, Kotarska K, Swierczynska A.},
journal = {Molecules},
year = {2024},
doi = {10.3390/molecules29143398},
pmid = {39064975}
}
@article{lin99542,
title = {Production of Esters in Escherichia coli Using Citrate Synthase Variants.},
author = {Shipmon JC, Rathinasabapathi P, Broich ML, Hemansi, Eiteman MA.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12071338},
pmid = {39065106}
}
@article{lin99848,
title = {Efficiency of acetate-based isopropanol synthesis in Escherichia coli W is controlled by ATP demand.},
author = {Kutscha R, Tomin T, Birner-Gruenberger R, Bekiaris PS, Klamt S, Pflugl S.},
journal = {Biotechnol Biofuels Bioprod},
year = {2024},
doi = {10.1186/s13068-024-02534-0},
pmid = {39103876}
}
@article{lin99622,
title = {Metagenomic analysis demonstrates distinct changes in the gut microbiome of Kawasaki diseases children.},
author = {Han L, Liu X, Lan Y, Hua Y, Fan Z, Li Y.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1416185},
pmid = {39104524}
}
@article{lin99439,
title = {Curcumin degradation in a soil microorganism: Screening and characterization of a beta-diketone hydrolase.},
author = {Hashimoto Y, Ishigami K, Hassaninasab A, Kishi K, Kumano T, Kobayashi M.},
journal = {J Biol Chem},
year = {2024},
doi = {10.1016/j.jbc.2024.107647},
pmid = {39122010}
}
@article{lin99419,
title = {Capturing methane with recombinant soluble methane monooxygenase and recombinant methyl-coenzyme M reductase.},
author = {Sanchez-Torres V, Wood TK.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.70000},
pmid = {39160605}
}
@article{lin99954,
title = {Physiological role and complex regulation of O2-reducing enzymes in the obligate anaerobe Clostridioides difficile.},
author = {Caulat LC, Lotoux A, Martins MC, Kint N, Anjou C, Teixeira M, Folgosa F, Morvan C, Martin-Verstraete I.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.01591-24},
pmid = {39189748}
}
@article{lin99620,
title = {Lysine Phoshoglycerylation Is Widespread in Bacteria and Overlaps with Acylation.},
author = {Mikkat S, Kreutzer M, Patenge N.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12081556},
pmid = {39203397}
}
@article{lin99841,
title = {The potential of native and engineered Clostridia for biomass biorefining.},
author = {Ponsetto P, Sasal EM, Mazzoli R, Valetti F, Gilardi G.},
journal = {Front Bioeng Biotechnol},
year = {2024},
doi = {10.3389/fbioe.2024.1423935},
pmid = {39219620}
}
@article{lin99369,
title = {Gut microbiota metabolic pathways: Key players in knee osteoarthritis development.},
author = {Di J, Xi Y, Wu Y, Di Y, Xing X, Zhang Z, Xiang C.},
journal = {Exp Gerontol},
year = {2024},
doi = {10.1016/j.exger.2024.112566},
pmid = {39226947}
}
@article{lin99839,
title = {Feedstock variability impacts the bioconversion of sugar and lignin streams derived from corn stover by Clostridium tyrobutyricum and engineered Pseudomonas putida.},
author = {Ruhl IA, Nelson RS, Katahira R, Kruger JS, Chen X, Haugen SJ, Ingraham MA, Woodworth SP, Alt H, Ramirez KJ, Peterson DJ, Ding L, Laible PD, Linger JG, Salvachua D.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.70006},
pmid = {39235453}
}
@article{lin98856,
title = {Species-specific ribosomal RNA-FISH identifies interspecies cellular-material exchange, active-cell population dynamics and cellular localization of translation machinery in clostridial cultures and co-cultures.},
author = {Hill JD, Hill JD, Papoutsakis ET.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00572-24},
pmid = {39254339}
}
@article{lin99771,
title = {Role of ammonia-lyases in the synthesis of the dithiomethylamine ligand during [FeFe]-hydrogenase maturation.},
author = {Pagnier A, Balci B, Shepard EM, Yang H, Drena A, Holliday GL, Hoffman BM, Broderick WE, Broderick JB.},
journal = {J Biol Chem},
year = {2024},
doi = {10.1016/j.jbc.2024.107760},
pmid = {39260698}
}
@article{lin99435,
title = {Unveiling Microbial Diversity: Raman Spectroscopy's Discrimination of Clostridium and Related Genera.},
author = {Salbreiter M, Wagenhaus A, Rosch P, Popp J.},
journal = {Anal Chem},
year = {2024},
doi = {10.1021/acs.analchem.4c03280},
pmid = {39292759}
}
@article{lin99366,
title = {Structural and biochemical insights into the molecular mechanism of N-acetylglucosamine/N-Acetylmuramic acid kinase MurK from Clostridium acetobutylicum.},
author = {He X, Liu C, Li X, Yang Q, Niu F, An L, Fan Y, Li Y, Zhou Z, Zhou H, Yang X, Liu X.},
journal = {Int J Biol Macromol},
year = {2024},
doi = {10.1016/j.ijbiomac.2024.135747},
pmid = {39304040}
}
@article{lin99868,
title = {Chemical genetic analysis of enoxolone inhibition of Clostridioides difficile toxin production reveals adenine deaminase and ATP synthase as antivirulence targets.},
author = {Marreddy RKR, Phelps GA, Churion K, Picker J, Powell R, Cherian PT, Bowling JJ, Stephan CC, Lee RE, Hurdle JG.},
journal = {J Biol Chem},
year = {2024},
doi = {10.1016/j.jbc.2024.107839},
pmid = {39343002}
}
@article{lin99588,
title = {Supplementation with Lactobacillus helveticus NS8 alleviated behavioral, neural, endocrine, and microbiota abnormalities in an endogenous rat model of depression.},
author = {Alatan H, Liang S, Shimodaira Y, Wu X, Hu X, Wang T, Luo J, Iijima K, Jin F.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1407620},
pmid = {39346901}
}
@article{lin99806,
title = {Expanded genome and proteome reallocation in a novel, robust Bacillus coagulans strain capable of utilizing pentose and hexose sugars.},
author = {Dooley D, Ryu S, Giannone RJ, Edwards J, Dien BS, Slininger PJ, Trinh CT.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00952-24},
pmid = {39377583}
}
@article{lin99364,
title = {Butyrate as a growth factor of Clostridium acetobutylicum.},
author = {Seo H, Capece SH, Hill JD, Otten JK, Papoutsakis ET.},
journal = {Metab Eng},
year = {2024},
doi = {10.1016/j.ymben.2024.10.005},
pmid = {39413987}
}
@article{lin98812,
title = {An Overview of Microorganisms Immobilized in a Gel Structure for the Production of Precursors, Antibiotics, and Valuable Products.},
author = {Berillo D, Malika T, Baimakhanova BB, Sadanov AK, Berezin VE, Trenozhnikova LP, Baimakhanova GB, Amangeldi AA, Kerimzhanova B.},
journal = {Gels},
year = {2024},
doi = {10.3390/gels10100646},
pmid = {39451299}
}
@article{lin99631,
title = {Gut microbiota composition and type 2 diabetes: Are these subjects linked Together?},
author = {Razavi S, Amirmozafari N, Zahedi Bialvaei A, Navab-Moghadam F, Khamseh ME, Alaei-Shahmiri F, Sedighi M.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e39464},
pmid = {39469674}
}
@article{lin99782,
title = {Exploiting hydrogenases for biocatalytic hydrogenations.},
author = {Sokolova D, Vincent KA.},
journal = {Chem Commun (Camb)},
year = {2024},
doi = {10.1039/d4cc04525d},
pmid = {39511987}
}
@article{lin99798,
title = {A genomic analysis reveals the diversity of cellulosome displaying bacteria.},
author = {Minor CM, Takayesu A, Ha SM, Salwinski L, Sawaya MR, Pellegrini M, Clubb RT.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1473396},
pmid = {39539715}
}
@article{lin99367,
title = {Artificial Cascade Transformation Biosystem for One-Pot Biomanufacturing of Odd-Numbered Neoagarooligosaccharides and d-Tagatose through Wiser Agarose Utilization.},
author = {Xu X, Gao J, Qing L, Zhang M, Sun J, Jiang H, Wang S, Dong H, Mao X.},
journal = {J Agric Food Chem},
year = {2024},
doi = {10.1021/acs.jafc.4c08619},
pmid = {39545938}
}
@article{lin99411,
title = {Evaluating the impact of redox potential on the growth capacity of anaerobic gut fungi.},
author = {England EE, Pratt CJ, Elshahed MS, Youssef NH.},
journal = {FEMS Microbes},
year = {2024},
doi = {10.1093/femsmc/xtae033},
pmid = {39563712}
}
@article{lin99617,
title = {Multiomics of yaks reveals significant contribution of microbiome into host metabolism.},
author = {Yang S, Zheng J, Mao H, Vinitchaikul P, Wu D, Chai J.},
journal = {NPJ Biofilms Microbiomes},
year = {2024},
doi = {10.1038/s41522-024-00609-2},
pmid = {39572587}
}
@article{lin98900,
title = {Development of SacB-based counterselection for efficient allelic exchange in Fusobacterium nucleatum.},
author = {Zhou P, G C B, Hu B, Wu C.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.02066-24},
pmid = {39611826}
}
@article{lin99793,
title = {Review of recent advances in improvement strategies for biofuels production from cyanobacteria.},
author = {Mescouto VA, Ferreira LDC, Paiva RJ, Oliveira DT, Santana MO, Rocha Filho GND, Luque R, Noronha RCR, Nascimento LASD.},
journal = {Heliyon},
year = {2024},
doi = {10.1016/j.heliyon.2024.e40293},
pmid = {39624284}
}
@article{lin99878,
title = {Greener approach to the comprehensive utilization of algal biomass and oil using novel Clostridial fusants and bio-based solvents.},
author = {Fiayaz A, Dahman Y.},
journal = {Eng Microbiol},
year = {2023},
doi = {10.1016/j.engmic.2022.100068},
pmid = {39629253}
}
@article{lin98956,
title = {Research advances on the consolidated bioprocessing of lignocellulosic biomass.},
author = {Li Z, Waghmare PR, Dijkhuizen L, Meng X, Liu W.},
journal = {Eng Microbiol},
year = {2024},
doi = {10.1016/j.engmic.2024.100139},
pmid = {39629327}
}
@article{lin99449,
title = {Optimizing hexanoic acid biosynthesis in Saccharomyces cerevisiae for the de novo production of olivetolic acid.},
author = {Schafer KJ, Aras M, Boles E, Kayser O.},
journal = {Biotechnol Biofuels Bioprod},
year = {2024},
doi = {10.1186/s13068-024-02586-2},
pmid = {39633477}
}
@article{lin99365,
title = {Enhanced butanol production through intracellular NADH regeneration in CdSe-C. acetobutylicumg semi-photosynthetic biohybrid system.},
author = {Liu T, Guo R, Wang X, Gu N, Wu N, Wu J, Wang Y.},
journal = {Bioresour Technol},
year = {2025},
doi = {10.1016/j.biortech.2024.131939},
pmid = {39638007}
}
@article{lin99987,
title = {The conserved noncoding RNA ModT coordinates growth and virulence in Clostridioides difficile.},
author = {Lence T, Sulzer J, Andress K, Gribling-Burrer AS, Lamm-Schmidt V, Barquist L, Smyth RP, Faber F.},
journal = {PLoS Biol},
year = {2024},
doi = {10.1371/journal.pbio.3002948},
pmid = {39671441}
}
@article{lin99094,
title = {Fungal bioprocessing for circular bioeconomy: Exploring lignocellulosic waste valorization.},
author = {Dhiman S, Kaur P, Narang J, Mukherjee G, Thakur B, Kaur S, Tripathi M.},
journal = {Mycology},
year = {2024},
doi = {10.1080/21501203.2024.2316824},
pmid = {39678640}
}
@article{lin99601,
title = {Mathematical modeling of biohydrogen production via dark fermentation of fruit peel wastes by Clostridium butyricum NE95.},
author = {Elerakey N, Rasmey AM, Aboseidah AA, Hawary H.},
journal = {BMC Biotechnol},
year = {2024},
doi = {10.1186/s12896-024-00925-7},
pmid = {39695505}
}
@article{lin99827,
title = {A CoA-Transferase and Acyl-CoA Dehydrogenase Convert 2-(Carboxymethyl)cyclohexane-1-Carboxyl-CoA During Anaerobic Naphthalene Degradation.},
author = {Kong Y, Riebe J, Fessner M, Schaller T, Wolper C, Stappert F, Meckelmann SW, Krajnc M, Weyrauch P, Schmitz OJ, Merten C, Niemeyer J, Hu X, Meckenstock RU.},
journal = {Environ Microbiol},
year = {2024},
doi = {10.1111/1462-2920.70013},
pmid = {39702997}
}
@article{lin98940,
title = {Purple non-sulfur bacteria for biotechnological applications.},
author = {Morrison HM, Bose A.},
journal = {J Ind Microbiol Biotechnol},
year = {2024},
doi = {10.1093/jimb/kuae052},
pmid = {39730143}
}
@article{lin99425,
title = {A Clostridioides difficile cell-free gene expression system for prototyping and gene expression analysis.},
author = {Zeng J, Wang H, Xu Y, Han J, Li Y, Wen S, Wu C, Li D, Liu Z, Zhang X, Tian G-B, Dong M.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.01566-24},
pmid = {39745467}
}
@article{lin98855,
title = {Leveraging Engineered Pseudomonas putida Minicells for Bioconversion of Organic Acids into Short-Chain Methyl Ketones.},
author = {Kozaeva E, Nieto-Dominguez M, Tang KKY, Stammnitz M, Nikel PI.},
journal = {ACS Synth Biol},
year = {2025},
doi = {10.1021/acssynbio.4c00700},
pmid = {39748701}
}
@article{lin99417,
title = {16S rRNA Sequencing Analysis Uncovers Dose-Dependent Cupric Chloride Effects on Silkworm Gut Microbiome Composition and Diversity.},
author = {Rong W, Wei Y, Chen Y, Huang L, Huang S, Lv Y, Guan D, Li X.},
journal = {Animals (Basel)},
year = {2024},
doi = {10.3390/ani14243634},
pmid = {39765538}
}
@article{lin98807,
title = {Bacterial Tolerance to 1-Butanol and 2-Butanol: Quantitative Assessment and Transcriptomic Response.},
author = {Arsov A, Petrova P, Gerginova M, Tsigoriyna L, Armenova N, Ignatova I, Petrov K.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms252413336},
pmid = {39769098}
}
@article{lin99475,
title = {Excessive Extracellular Ammonium Production by a Free-Living Nitrogen-Fixing Soil Clostridium sp. Strain.},
author = {Park S, Jang J.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12122634},
pmid = {39770836}
}
@article{lin99361,
title = {Kinetically controlled irreversible unfolding of esterase from Clostridium acetobutylicum: Thermal deactivation kinetics and structural studies.},
author = {Ramachandran DU, Gummadi SN.},
journal = {Int J Biol Macromol},
year = {2025},
doi = {10.1016/j.ijbiomac.2025.139604},
pmid = {39788269}
}
@article{lin99396,
title = {Engineering Yarrowia lipolytica for the production of beta-carotene by carbon and redox rebalancing.},
author = {Lee H, Song J, Seo SW.},
journal = {J Biol Eng},
year = {2025},
doi = {10.1186/s13036-025-00476-1},
pmid = {39815368}
}
@article{lin99477,
title = {Distinct Valence States of the [4Fe4S] Cluster Revealed in the Hydrogenase CrHydA1.},
author = {Heghmanns M, Yadav S, Boschmann S, Selve VR, Veliju A, Brocks C, Happe T, Pantazis DA, Kasanmascheff M.},
journal = {Angew Chem Int Ed Engl},
year = {2025},
doi = {10.1002/anie.202424167},
pmid = {39828591}
}
@article{lin99363,
title = {Enhancing biobutanol production by optimizing acetone-butanol-ethanol fermentation from sorghum grains through strategic immobilization of amylolytic enzymes.},
author = {Mehrabi Z, Taheri-Kafrani A, Razmjou A, Cai D, Amiri H.},
journal = {Bioresour Technol},
year = {2025},
doi = {10.1016/j.biortech.2025.132094},
pmid = {39832619}
}
@article{lin99398,
title = {Scaffold-enabled high-resolution cryo-EM structure determination of RNA.},
author = {Haack DB, Rudolfs B, Jin S, Khitun A, Weeks KM, Toor N.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-024-55699-5},
pmid = {39837824}
}
@article{lin99527,
title = {Evaluation of Yeast Alcohol Acetyltransferases for Ethyl Acetate Production in Clostridium ljungdahlii.},
author = {Boto ST, Gerges K, Bardl B, Rosenbaum MA.},
journal = {Eng Life Sci},
year = {2025},
doi = {10.1002/elsc.202400076},
pmid = {39850489}
}
@article{lin98963,
title = {Development of a conditional plasmid for gene deletion in non-model Fusobacterium nucleatum strains.},
author = {Zhou P, G C B, Wu C.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.01816-24},
pmid = {39853127}
}
@article{lin99448,
title = {Structural and kinetic characterization of an acetoacetyl-Coenzyme A: acetate Coenzyme A transferase from the extreme thermophile Thermosipho melanesiensis.},
author = {Bing RG, Buhrman GK, Ford KC, Straub CT, Laemthong T, Rose RB, Adams MWW, Kelly RM.},
journal = {Biochem J},
year = {2025},
doi = {10.1042/bcj20240747},
pmid = {39869497}
}
@article{lin98896,
title = {Deletion of atypical type II restriction genes in Clostridium cellulovorans using a Cas9-based gene editing system.},
author = {Schollkopf AI, Almeida L, Krammer K, Rivero CG, Liebl W, Ehrenreich A.},
journal = {Appl Microbiol Biotechnol},
year = {2025},
doi = {10.1007/s00253-025-13404-6},
pmid = {39878871}
}
@article{lin99668,
title = {Control of Clostridioides difficile virulence and physiology by the flagellin homeostasis checkpoint FliC-FliW-CsrA in the absence of motility.},
author = {Zhu D, Wozniak KJ, Midani F, Wang S, Sun X, Britton RA.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.03801-24},
pmid = {39882902}
}
@article{lin99360,
title = {Elucidating the Biosynthesis and Function of an Autoinducing Peptide in Clostridium acetobutylicum.},
author = {Zhu C, Wang Z, Zhou X, Wu Y, Kang W, Wu R, Xue C.},
journal = {Angew Chem Int Ed Engl},
year = {2025},
doi = {10.1002/anie.202500904},
pmid = {39932863}
}
@article{lin99564,
title = {Cellodextrin Metabolism and Phosphotransferase System-Catalyzed Uptake in Enterococcus faecalis.},
author = {Combret V, Rince I, Cochelin R, Desriac F, Muller C, Soussan D, Hartke A, Deutscher J, Sauvageot N.},
journal = {Mol Microbiol},
year = {2025},
doi = {10.1111/mmi.15346},
pmid = {39948710}
}
@article{lin99379,
title = {From pre-culture to solvent: current trends in Clostridium acetobutylicum cultivation.},
author = {Oehlenschlager K, Hengsbach JN, Volkmar M, Ulber R.},
journal = {Appl Microbiol Biotechnol},
year = {2025},
doi = {10.1007/s00253-025-13428-y},
pmid = {39964448}
}
@article{lin99401,
title = {Investigation of the Structure and Functional Activity of the YqeK Protein in Streptococcus pyogenes with High Efficiency in Hydrolyzing Ap4A.},
author = {Yang K, Hu S, Yao Y, Li K, Wang Z, Wang X, Ma D, Bi M, Mo X.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13020230},
pmid = {40005597}
}
@article{lin99456,
title = {Electro-Enhanced Gas Fermentation for Bioproduction of Volatile Fatty Acids and Alcohols.},
author = {Hiebl C, Fuchs W.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13020249},
pmid = {40005616}
}
@article{lin99370,
title = {Comparative Metabolomics of Clostridium acetobutylicum ATCC824 and its Engineered Strain, C. acetobutylicum DG1.},
author = {Chung JH, Lee J, Kim S, Kim KH.},
journal = {J Microbiol Biotechnol},
year = {2025},
doi = {10.4014/jmb.2407.07028},
pmid = {40016151}
}
@article{lin99943,
title = {Gut dysbiosis conveys psychological stress to activate LRP5/beta-catenin pathway promoting cancer stemness.},
author = {Cui B, Luo H, He B, Liu X, Lv D, Zhang X, Su K, Zheng S, Lu J, Wang C, Yang Y, Zhao Z, Liu X, Wang X, Zhao Y, Nie X, Jiang Y, Zhang Z, Liu C, Chen X, Cai A, Lv Z, Liu Z, An F, Zhang Y, Yan Q, Kelley KW, Xu G, Xu L, Liu Q, Peng F.},
journal = {Signal Transduct Target Ther},
year = {2025},
doi = {10.1038/s41392-025-02159-1},
pmid = {40038255}
}
@article{lin99627,
title = {Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations.},
author = {Scott WT, Rockx S, Marien Q, Regueira A, Candry P, Ganigue R, Koehorst JJ, Schaap PJ.},
journal = {Comput Struct Biotechnol J},
year = {2025},
doi = {10.1016/j.csbj.2025.01.013},
pmid = {40046987}
}
@article{lin99692,
title = {Deletion of Re-citrate synthase allows for analysis of contributions of tricarboxylic acid cycle directionality to the growth of Heliomicrobium modesticaldum.},
author = {Layton AM, McCauley C, Redding KE.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.01772-24},
pmid = {40047422}
}
@article{lin99404,
title = {A [FeFe] Hydrogenase-Rubrerythrin Chimeric Enzyme Functions to Couple H2 Oxidation to Reduction of H2O2 in the Foodborne Pathogen Clostridium perfringens.},
author = {Taylor J, Mulder DW, Corrigan PS, Ratzloff MW, Irizarry Gonzalez N, Lubner CE, King PW, Silakov A.},
journal = {J Am Chem Soc},
year = {2025},
doi = {10.1021/jacs.4c18425},
pmid = {40048633}
}
@article{lin99545,
title = {High-throughput workflow for cultivation and characterization of gut microbiota strains with anti-inflammatory properties and metabolite signature associated with gut-brain communication.},
author = {Dokic J, Dinic M, Sokovic Bajic S, Bisenic A, Mitrovic H, Jakovljevic S, Radojevic D, Brdaric E, Lukic J, Zivkovic M, Tolinacki M, Terzic-Vidojevic A, Golic N.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-93180-5},
pmid = {40082612}
}
@article{lin99758,
title = {A Review of the Valorization of Dairy Industry Wastes through Thermochemical, Biological, and Integrated Processes for Value-Added Products.},
author = {Udourioh GA, Solomon MM, Okolie JA.},
journal = {Food Sci Anim Resour},
year = {2025},
doi = {10.5851/kosfa.2025.e2},
pmid = {40093637}
}
@article{lin99432,
title = {The role of gut microbiota in predicting the weight loss following laparoscopic sleeve gastrectomy.},
author = {Chen J, Shen B, Shen H, Zhu L, Yu H, Tong Y, Yu W.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1560368},
pmid = {40099179}
}
@article{lin99933,
title = {Defense arsenal of the strict anaerobe Clostridioides difficile against reactive oxygen species encountered during its infection cycle.},
author = {Lotoux A, Caulat L, Martins Alves C, Alves Feliciano C, Morvan C, Folgosa F, Martin-Verstraete I.},
journal = {mBio},
year = {2025},
doi = {10.1128/mbio.03753-24},
pmid = {40111048}
}
@article{lin99819,
title = {Outlook on Synthetic Biology-Driven Hydrogen Production: Lessons from Algal Photosynthesis Applied to Cyanobacteria.},
author = {Jaramillo A, Satta A, Pinto F, Faraloni C, Zittelli GC, Silva Benavides AM, Torzillo G, Schumann C, Mendez JF, Berggren G, Lindblad P, Parente M, Esposito S, Diano M.},
journal = {Energy Fuels},
year = {2025},
doi = {10.1021/acs.energyfuels.4c04772},
pmid = {40134520}
}
@article{lin99497,
title = {Inducible promoters of bacterial microcompartments improve the CRISPR/Cas9 tools for efficient metabolic engineering of Clostridium ljungdahlii.},
author = {Zhang J-Z, Li Y-Z, Xi Z-N, Zhang Y, Liu Z-Y, Ma X-Q, Li F-L.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.02183-24},
pmid = {40135905}
}
@article{lin99547,
title = {Gut virome and its implications in the pathogenesis and therapeutics of inflammatory bowel disease.},
author = {Wu Y, Cheng R, Lin H, Li L, Jia Y, Philips A, Zuo T, Zhang H.},
journal = {BMC Med},
year = {2025},
doi = {10.1186/s12916-025-04016-y},
pmid = {40140901}
}
@article{lin99418,
title = {Multi-omics assessment of gut microbiota in circadian rhythm disorders: a cross-sectional clinical study.},
author = {Tian Y, Zhao R, Xiao S, Chen L, Cheng Y, Meng W, Tang Z, Cai Y, Xiao Z, Yi A, Chen M, Zhao X, Ruan G, Wei Y.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1524987},
pmid = {40212846}
}
@article{lin99362,
title = {Engineering of Microbial Cell Factories for Enhanced Acetic Acid and Ethanol Production Via Heterologous Overexpression of the CODH Gene in CO2 Fermentation.},
author = {Tharak A, G S, Kaveti S, Jain N, Venkata Mohan S.},
journal = {ACS Synth Biol},
year = {2025},
doi = {10.1021/acssynbio.4c00902},
pmid = {40231752}
}
@article{lin99373,
title = {Role of gut microbiota and immune response in breast cancer progression.},
author = {Zhang X, Ma N, Jin C, Cao X.},
journal = {Biomol Biomed},
year = {2025},
doi = {10.17305/bb.2025.12003},
pmid = {40248981}
}
@article{lin99403,
title = {The Strategy and Application of Gene Attenuation in Metabolic Engineering.},
author = {Zhang Y, Jin Z, Liu L, Zhang D.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13040927},
pmid = {40284763}
}
@article{lin99471,
title = {Improving sustainable isopropanol production in engineered Escherichia coli W via oxygen limitation.},
author = {Kutscha R, Uhlir D, Pflugl S.},
journal = {Microb Cell Fact},
year = {2025},
doi = {10.1186/s12934-025-02720-1},
pmid = {40287719}
}
@article{lin98847,
title = {Separate, separated, and together: the transcriptional program of the Clostridium acetobutylicum-Clostridium ljungdahlii syntrophy leading to interspecies cell fusion.},
author = {Willis NB, Papoutsakis ET.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00030-25},
pmid = {40298437}
}
@article{lin99612,
title = {Application of exogenous electron mediator in fermentation to enhance the production of value-added products.},
author = {Yu Y, Shi Z, Li W, Bian M, Cheng C, Xi Y, Yao S, Zeng X, Jia Y.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.00495-25},
pmid = {40353653}
}
@article{lin99454,
title = {Metabolic engineering of Parageobacillus thermoglucosidasius for thermophilic production of 1-butanol.},
author = {Domenech P, Pogrebnyakov I, Jensen SI, Driessen JLSP, Riisager A, Nielsen AT.},
journal = {AMB Express},
year = {2025},
doi = {10.1186/s13568-025-01879-5},
pmid = {40358813}
}
@article{lin99558,
title = {H-cluster Intermediates and Catalytic Properties of Clostridium pasteurianum [FeFe]-Hydrogenase III.},
author = {Kisgeropoulos EC, Ratzloff MW, Stroeva-Dahl EM, Hasan S, Varghese F, Artz JH, Peters JW, Mulder DW, King PW.},
journal = {Biochemistry},
year = {2025},
doi = {10.1021/acs.biochem.5c00066},
pmid = {40358972}
}
@article{lin99468,
title = {Expression and Immunogenicity Analysis of Recombinant Leptospira Interrogans Surface Protein LigA in Mouse Model.},
author = {Chalesh A, Khaki P, Moradi Bidhendi S, Tebianian M, Tarnabi MT.},
journal = {Vet Med Sci},
year = {2025},
doi = {10.1002/vms3.70360},
pmid = {40388240}
}
@article{lin99654,
title = {A conserved nuclease facilitates environmental DNA uptake.},
author = {Hanssmann J, Pane-Farre J, Meiser M, Girbig M, Fu L, Madej MG, Sendker FL, Tholken C, Lechner M, Ziegler C, Hochberg GKA, Bange G, Thanbichler M, Hinrichs R.},
journal = {Nucleic Acids Res},
year = {2025},
doi = {10.1093/nar/gkaf443},
pmid = {40421801}
}
@article{lin99400,
title = {Enhancing alfalfa and sorghum silage quality using agricultural wastes: fermentation dynamics, microbial communities, and functional insights.},
author = {Zhao Y, Liu D, Chen Y, Lei Y, Li M, Wang J, He X, Yang Y, Zhang X, Liu S, Zhang X, Cheng Q, Chen C.},
journal = {BMC Plant Biol},
year = {2025},
doi = {10.1186/s12870-025-06722-4},
pmid = {40442596}
}
@article{lin99431,
title = {Gut microbiome signatures predict 5-ASA efficacy in ulcerative colitis.},
author = {Dang Y, Xu X, Ma J, Zhou M, Xu C, Huang X, Xu F, Wang Z, Shi H, Zhang S.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.112568},
pmid = {40510115}
}
@article{lin99375,
title = {Is a Malleable Active Site Loop the Key to High Substrate Promiscuity? Hybrid, Biocatalytic Route to Structurally Diverse Taxoid Side Chains with Remarkable Dual Stereocontrol.},
author = {Kudalkar GP, Leidner F, Kumar N, Hass JL, Madzelan P, Powell DR, Day VW, Magueres PL, Ferrara JD, Daniels LM, Yamano A, Ito S, Niu W, Grubmuller H, Wilson MA, Berkowitz DB.},
journal = {Angew Chem Int Ed Engl},
year = {2025},
doi = {10.1002/anie.202510889},
pmid = {40537411}
}
@article{lin99605,
title = {Programmable cell aggregation by a synthetic biosilicification approach.},
author = {Wang Q, Sun J, Zang L, Yao H, Wang L, Zhu R, Li J, Zeng S, Tang H, Wang T, Liu J, Wang B, Li B, Liu Z, Dai Z.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.112519},
pmid = {40546950}
}
@article{lin99391,
title = {The impact of co-fed plastic diet on Tenebrio molitor gut bacterial community structure.},
author = {Ilijin L, Popovic D, Zivkovic M, Todorovic D, Mrdakovic M, Vlahovic M, Peric-Mataruga V.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-04805-8},
pmid = {40594024}
}
@article{lin99424,
title = {Calcium butyrate efficacy in pediatric irritable bowel syndrome: Randomized placebo-controlled multiomics-based clinical trial.},
author = {Cristofori F, Calabrese FM, Iacobellis I, Santamaria M, Celano G, Ferrocino I, Di Sabato E, Pergola R, Dargenio VN, Paulucci L, De Angelis M, Francavilla R.},
journal = {J Pediatr Gastroenterol Nutr},
year = {2025},
doi = {10.1002/jpn3.70154},
pmid = {40635319}
}
@article{lin99466,
title = {Anaerobic HgII reduction is driven by cellular HgII-thiol interactions.},
author = {Lavoie NC, Poulain AJ.},
journal = {Access Microbiol},
year = {2025},
doi = {10.1099/acmi.0.000932.v3},
pmid = {40698175}
}
@article{lin98865,
title = {SMC-like Wadjet system prevents plasmid transfer into Clostridium cellulovorans.},
author = {Schollkopf AI, Ehrenreich A, Liebl W.},
journal = {Appl Microbiol Biotechnol},
year = {2025},
doi = {10.1007/s00253-025-13551-w},
pmid = {40699345}
}
@article{lin98869,
title = {Biological Routes for Biohydrogen Production: A Clean and Carbon-Free Fuel.},
author = {Cha M, Park MS, Kim SJ.},
journal = {Biotechnol J},
year = {2025},
doi = {10.1002/biot.70074},
pmid = {40726050}
}
@article{lin99487,
title = {Maximizing Biomass Production and Carotenoid-like Pigments Yield in Kocuria sediminis As04 Through Culture Optimization.},
author = {Lopez-Mora DJ, Flores-Davalos AG, Lorenzo-Santiago MA, Guardado-Fierros BG, Rodriguez-Campos J, Contreras-Ramos SM.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13071555},
pmid = {40732064}
}
@article{lin99445,
title = {Effects of heat stress and depressed feed intake on the cecal and ileal microbiota of broiler chickens.},
author = {Campos PM, Greene ES, Proszkowiec-Weglarz M, Dridi S.},
journal = {Poult Sci},
year = {2025},
doi = {10.1016/j.psj.2025.105591},
pmid = {40737902}
}
@article{lin99643,
title = {A Hammett Study of Clostridium acetobutylicum Alcohol Dehydrogenase (CaADH): An Enzyme with Remarkable Substrate Promiscuity and Utility for Organic Synthesis.},
author = {Kudalkar GP, Tiwari VK, Lee JD, Berkowitz DB.},
journal = {Synlett},
year = {2020},
doi = {10.1055/s-0039-1691576},
pmid = {40761227}
}
@article{lin98842,
title = {Protocol to obtain genetically engineered Acetobacterium woodii and Eubacterium callanderi strains.},
author = {Baur KS, Ruhle B, Reith T, Krieg A, Bengelsdorf FR.},
journal = {STAR Protoc},
year = {2025},
doi = {10.1016/j.xpro.2025.104011},
pmid = {40768338}
}
@article{lin99553,
title = {Thermophilic site-specific recombination system for rapid insertion of heterologous DNA into the Clostridium thermocellum chromosome.},
author = {Ashok N, Kaygusuz Y, Schindel HS, Thurmon S, Eckert CA, Guss AM.},
journal = {J Ind Microbiol Biotechnol},
year = {2024},
doi = {10.1093/jimb/kuaf023},
pmid = {40844421}
}
@article{lin98792,
title = {Higher butanol titer and selectivity in electro-fermentation experiments with Clostridium acetobutylicum ATCC 824 are due mainly to methyl viologen rather than electrode polarization.},
author = {Beudy E, Menir S, Laurent M, Ben Chaabane F, Bouchez T, Velly H.},
journal = {Bioprocess Biosyst Eng},
year = {2025},
doi = {10.1007/s00449-025-03212-7},
pmid = {40883482}
}
@article{lin99447,
title = {Integrated co-cultivation and subsequent esterification: Harnessing Saccharomyces cerevisiae and Clostridium tyrobutyricum for streamlined ester production.},
author = {Oehlenschlager K, Lorenz M, Schepp E, Di Nonno S, Holtmann D, Ulber R.},
journal = {Biotechnol Biofuels Bioprod},
year = {2025},
doi = {10.1186/s13068-025-02698-3},
pmid = {40890840}
}
@article{lin99359,
title = {The peptidoglycan-binding domain of a mycobacterial prophage-encoded LysinB reveals diverse approaches for domain conservation in hydrolases.},
author = {Das R, Nadar K, Arora R, Bajpai U.},
journal = {Int J Biol Macromol},
year = {2025},
doi = {10.1016/j.ijbiomac.2025.147435},
pmid = {40914364}
}
@article{lin98857,
title = {A single residue affects the dynamics and shape of a tetrameric GH43 beta-1,4-d-xylosidase from Levilactobacillus brevis DSM1269.},
author = {Linares-Pasten JA, Faryar R, Torrez Alvarez S, Albasri K, Shuoker B, Abou Hachem M, Logan DT, Karlsson EN.},
journal = {Protein Sci},
year = {2025},
doi = {10.1002/pro.70299},
pmid = {40944464}
}
@article{lin99464,
title = {Biochemical characterization and X-ray structural and mutagenic analyses of the putative autolysin CdCwlT33800 catalytic domain from Clostridioides difficile.},
author = {Sekiya H, Nonaka Y, Kamitori S, Tamai E.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.01216-25},
pmid = {40956107}
}
@article{lin98794,
title = {Electron conductive compounds alter fermentative pathways and cooperation in Clostridium carboxidivorans and Clostridium acetobutylicum in co-culture.},
author = {Feliu-Paradeda L, Puig S, Baneras L.},
journal = {FEMS Microbiol Ecol},
year = {2025},
doi = {10.1093/femsec/fiaf090},
pmid = {40972045}
}
@article{lin99459,
title = {The Sef1 transcription factor interacts with promoters of riboflavin structural genes in Candida famata.},
author = {Romanov S, Lyzak O, Sibirny A, Dmytruk K.},
journal = {FEMS Yeast Res},
year = {2025},
doi = {10.1093/femsyr/foaf055},
pmid = {40973787}
}
@article{lin99480,
title = {Associations between sleep and the gut microbiome in adults with colorectal cancer and their caregivers.},
author = {Barb JJ, Lee LJ, Ahmed A, Son EH, Nanda S, Yang L, Ban Y, Ting A, Tsai TC, Kim Y.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-18402-2},
pmid = {40983606}
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@article{lin98843,
title = {Efficient butanol bioproduction from renewable lignocellulosic biomass by an integrated strategy of ternary deep eutectic solvent pretreatment and clostridial fermentation: toward complete utilization of reed straw.},
author = {Shao Y, Zhang C, Wang J, Xie F, Wang S, Yang R, Luo H.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1670387},
pmid = {41001052}
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@article{lin99407,
title = {Harnessing Microbial Power for a Sustainable Future Food System.},
author = {Birgovan Rhazzali AL, Lakatos ES, Cioca LI, Paul NL, Vatca SD, Kis E, Pacurariu RL.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13092217},
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@article{lin99920,
title = {The Cryptic Nature of Fe-S Clusters: A Case Study of the Hepatitis B HBx Oncoprotein.},
author = {Quist T, Chen J, MacNeil A, Pandelia ME.},
journal = {Inorganics (Basel)},
year = {2023},
doi = {10.3390/inorganics11120475},
pmid = {41059246}
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@article{lin98841,
title = {Identification and regulation of an alternative PTS for disaccharide utilization in Clostridium acetobutylicum.},
author = {Ren Z, Qiu Z, Tian Y, You M, Xu C.},
journal = {Appl Environ Microbiol},
year = {2025},
doi = {10.1128/aem.00709-25},
pmid = {41060002}
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@article{lin99376,
title = {Cross-talk between engineered Clostridium acetobutylicum and Clostridium ljungdahlii in syntrophic cocultures enhances isopropanol and butanol production.},
author = {Otten JK, Hill JD, Willis NB, Dougherty J, Dalton A, Papoutsakis ET.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1674318},
pmid = {41122463}
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@article{lin99392,
title = {Structural and functional characterization of gut microbiota in dyslipidemic patients from high-altitude Tibetan pastoral areas.},
author = {Chen J, Luo Y, Hao Y, Wang Q, Wang Q.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1676238},
pmid = {41132557}
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@article{lin99384,
title = {Optimization-based framework with flux balance analysis (FBA) and metabolic pathway analysis (MPA) for identifying metabolic objective functions.},
author = {Wen CM, Papoutsakis E, Ierapetritou M.},
journal = {PLoS Comput Biol},
year = {2025},
doi = {10.1371/journal.pcbi.1013635},
pmid = {41144574}
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@article{lin98859,
title = {A comprehensive review of genomic-scale genetic engineering as a strategy to improve bacterial productivity.},
author = {Pantoja-Alonso MA, Camas-Reyes JA, Cano-Segura R, Cardenas-Aquino MDR, Martinez-Antonio A.},
journal = {Microbiology (Reading)},
year = {2025},
doi = {10.1099/mic.0.001628},
pmid = {41182907}
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@article{lin98796,
title = {Propanol production through microbial fermentation of biomass.},
author = {Sun C, Yang L, Zhao C, Li H, Deng Z, Liu G, Wu C.},
journal = {Bioresour Bioprocess},
year = {2025},
doi = {10.1186/s40643-025-00966-6},
pmid = {41191190}
}
@article{lin99452,
title = {Age-diet interactions significantly influence intratumoral gene expression, gut microbiome signature and tumor microenvironment in colorectal cancer.},
author = {Soni S, Mittal P, Lo JH, Yang Y, Smbatyan G, Lee K, Wan J, Kumagai H, Yen K, Mehta HH, Miller B, Torres-Gonzalez L, Battaglin F, Shah UH, Bartolini M, Zhang W, Craig DW, Millstein J, Cohen P, Lenz HJ.},
journal = {Neoplasia},
year = {2025},
doi = {10.1016/j.neo.2025.101245},
pmid = {41201920}
}
@article{lin99494,
title = {A two-stage strategy for methanogenesis suppression and rapid acetogenic biofilm formation in microbial electrosynthesis.},
author = {Ferretti J, Zegers MAJ, Zeppilli M, Jourdin L.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1655259},
pmid = {41244698}
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@article{lin98887,
title = {A ubiquitin-like protein controls assembly of a bacterial type VIIb secretion system.},
author = {Oka GU, Benoit N, Siroy A, Gubellini F, Marza E, Fronzes R.},
journal = {Sci Adv},
year = {2025},
doi = {10.1126/sciadv.ady9587},
pmid = {41270170}
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@article{lin98840,
title = {Recombinant Clostridium acetobutylicum Endoxylanase for Xylooligosaccharide Production from Pretreated Lignocellulosic Biomass.},
author = {Husna A, Wardani AK, Hu CY, Chen YC.},
journal = {BioTech (Basel)},
year = {2025},
doi = {10.3390/biotech14040085},
pmid = {41283320}
}
@article{lin99377,
title = {Engineering the Electron Relay in [FeFe]-Hydrogenase Enhances Electrocatalytic H2 Evolution.},
author = {Lai TP, Myers WK, Carr SB, Ramirez MA, Vincent KA, Morra S, Rodriguez-Macia P.},
journal = {ACS Catal},
year = {2025},
doi = {10.1021/acscatal.5c03665},
pmid = {41307037}
}