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title = {Study of microbiome changes in patients with ulcerative colitis in the Central European part of Russia},
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journal = {Heliyon.},
year = {2021},
}
@article{lin283482,
title = {Fasting elicits gut microbiome signature changes that extend to type 1 diabetes patients},
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journal = {Front Endocrinol (Lausanne)},
year = {2025},
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title = {Fusicatenibacter saccharivorans gen. nov., sp. nov., isolated from human faeces.},
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title = {Altered microbiota associated with abnormal humoral immune responses to commensal organisms in enthesitis-related arthritis.},
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journal = {Arthritis Res Ther},
year = {2014},
doi = {10.1186/s13075-014-0486-0},
pmid = {25434931}
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title = {Diversity of Intestinal Clostridium coccoides Group in the Japanese Population, as Demonstrated by Reverse Transcription-Quantitative PCR.},
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journal = {PLoS One},
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title = {Use of recombinant porcine beta-defensin 2 as a medicated feed additive for weaned piglets.},
author = {Peng Z, Wang A, Xie L, Song W, Wang J, Yin Z, Zhou D, Li F.},
journal = {Sci Rep},
year = {2016},
doi = {10.1038/srep26790},
pmid = {27225034}
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@article{lin283630,
title = {Identification of Novel Genomic Islands in Liverpool Epidemic Strain of Pseudomonas aeruginosa Using Segmentation and Clustering.},
author = {Jani M, Mathee K, Azad RK.},
journal = {Front Microbiol},
year = {2016},
doi = {10.3389/fmicb.2016.01210},
pmid = {27536294}
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@article{lin283469,
title = {A Single Species of Clostridium Subcluster XIVa Decreased in Ulcerative Colitis Patients.},
author = {Takeshita K, Mizuno S, Mikami Y, Sujino T, Saigusa K, Matsuoka K, Naganuma M, Sato T, Takada T, Tsuji H, Kushiro A, Nomoto K, Kanai T.},
journal = {Inflamm Bowel Dis},
year = {2016},
doi = {10.1097/mib.0000000000000972},
pmid = {27824645}
}
@article{lin283626,
title = {Microbiomes associated with infective stages of root-knot and lesion nematodes in soil.},
author = {Elhady A, Gine A, Topalovic O, Jacquiod S, Sorensen SJ, Sorribas FJ, Heuer H.},
journal = {PLoS One},
year = {2017},
doi = {10.1371/journal.pone.0177145},
pmid = {28472099}
}
@article{lin283588,
title = {Western Indian Rural Gut Microbial Diversity in Extreme Prakriti Endo-Phenotypes Reveals Signature Microbes.},
author = {Chauhan NS, Pandey R, Mondal AK, Gupta S, Verma MK, Jain S, Ahmed V, Patil R, Agarwal D, Girase B, Shrivastava A, Mobeen F, Sharma V, Srivastava TP, Juvekar SK, Prasher B, Mukerji M, Dash D.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.00118},
pmid = {29487572}
}
@article{lin283619,
title = {Counting the Countless: Bacterial Quantification by Targeting rRNA Molecules to Explore the Human Gut Microbiota in Health and Disease.},
author = {Tsuji H, Matsuda K, Nomoto K.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.01417},
pmid = {30008707}
}
@article{lin283614,
title = {Changes in gut microbiota and plasma inflammatory factors across the stages of colorectal tumorigenesis: a case-control study.},
author = {Zhang Y, Yu X, Yu E, Wang N, Cai Q, Shuai Q, Yan F, Jiang L, Wang H, Liu J, Chen Y, Li Z, Jiang Q.},
journal = {BMC Microbiol},
year = {2018},
doi = {10.1186/s12866-018-1232-6},
pmid = {30157754}
}
@article{lin283617,
title = {An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men.},
author = {Armstrong AJS, Shaffer M, Nusbacher NM, Griesmer C, Fiorillo S, Schneider JM, Preston Neff C, Li SX, Fontenot AP, Campbell T, Palmer BE, Lozupone CA.},
journal = {Microbiome},
year = {2018},
doi = {10.1186/s40168-018-0580-7},
pmid = {30396369}
}
@article{lin283620,
title = {A human gut bacterial genome and culture collection for improved metagenomic analyses.},
author = {Forster SC, Kumar N, Anonye BO, Almeida A, Viciani E, Stares MD, Dunn M, Mkandawire TT, Zhu A, Shao Y, Pike LJ, Louie T, Browne HP, Mitchell AL, Neville BA, Finn RD, Lawley TD.},
journal = {Nat Biotechnol},
year = {2019},
doi = {10.1038/s41587-018-0009-7},
pmid = {30718869}
}
@article{lin283520,
title = {Selecting a Single Stereocenter: The Molecular Nuances That Differentiate beta-Hexuronidases in the Human Gut Microbiome.},
author = {Pellock SJ, Walton WG, Redinbo MR.},
journal = {Biochemistry},
year = {2019},
doi = {10.1021/acs.biochem.8b01285},
pmid = {30729778}
}
@article{lin283432,
title = {Faecal microbiota from patients with cirrhosis has a low capacity to ferment non-digestible carbohydrates into short-chain fatty acids.},
author = {Jin M, Kalainy S, Baskota N, Chiang D, Deehan EC, McDougall C, Tandon P, Martinez I, Cervera C, Walter J, Abraldes JG.},
journal = {Liver Int},
year = {2019},
doi = {10.1111/liv.14106},
pmid = {30919578}
}
@article{lin283622,
title = {Dietary supplementation with inulin-propionate ester or inulin improves insulin sensitivity in adults with overweight and obesity with distinct effects on the gut microbiota, plasma metabolome and systemic inflammatory responses: a randomised cross-over trial.},
author = {Chambers ES, Byrne CS, Morrison DJ, Murphy KG, Preston T, Tedford C, Garcia-Perez I, Fountana S, Serrano-Contreras JI, Holmes E, Reynolds CJ, Roberts JF, Boyton RJ, Altmann DM, McDonald JAK, Marchesi JR, Akbar AN, Riddell NE, Wallis GA, Frost GS.},
journal = {Gut},
year = {2019},
doi = {10.1136/gutjnl-2019-318424},
pmid = {30971437}
}
@article{lin283528,
title = {Dietary supplementation with partially hydrolyzed guar gum helps improve constipation and gut dysbiosis symptoms and behavioral irritability in children with autism spectrum disorder.},
author = {Inoue R, Sakaue Y, Kawada Y, Tamaki R, Yasukawa Z, Ozeki M, Ueba S, Sawai C, Nonomura K, Tsukahara T, Naito Y.},
journal = {J Clin Biochem Nutr},
year = {2019},
doi = {10.3164/jcbn.18-105},
pmid = {31138955}
}
@article{lin283624,
title = {Treatment-Specific Composition of the Gut Microbiota Is Associated With Disease Remission in a Pediatric Crohn's Disease Cohort.},
author = {Sprockett D, Fischer N, Boneh RS, Turner D, Kierkus J, Sladek M, Escher JC, Wine E, Yerushalmi B, Dias JA, Shaoul R, Kori M, Snapper SB, Holmes S, Bousvaros A, Levine A, Relman DA.},
journal = {Inflamm Bowel Dis},
year = {2019},
doi = {10.1093/ibd/izz130},
pmid = {31276165}
}
@article{lin283533,
title = {Multiple origins of reverse transcriptases linked to CRISPR-Cas systems.},
author = {Toro N, Martinez-Abarca F, Mestre MR, Gonzalez-Delgado A.},
journal = {RNA Biol},
year = {2019},
doi = {10.1080/15476286.2019.1639310},
pmid = {31276437}
}
@article{lin283628,
title = {Study of the impact of long-duration space missions at the International Space Station on the astronaut microbiome.},
author = {Voorhies AA, Mark Ott C, Mehta S, Pierson DL, Crucian BE, Feiveson A, Oubre CM, Torralba M, Moncera K, Zhang Y, Zurek E, Lorenzi HA.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-46303-8},
pmid = {31289321}
}
@article{lin283576,
title = {Dietary intake influences gut microbiota development of healthy Australian children from the age of one to two years.},
author = {Matsuyama M, Morrison M, Cao KL, Pruilh S, Davies PSW, Wall C, Lovell A, Hill RJ.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-48658-4},
pmid = {31462648}
}
@article{lin283578,
title = {Spacer acquisition from RNA mediated by a natural reverse transcriptase-Cas1 fusion protein associated with a type III-D CRISPR-Cas system in Vibrio vulnificus.},
author = {Gonzalez-Delgado A, Mestre MR, Martinez-Abarca F, Toro N.},
journal = {Nucleic Acids Res},
year = {2019},
doi = {10.1093/nar/gkz746},
pmid = {31504832}
}
@article{lin283467,
title = {Comparative Analysis of Fecal Microbiota Composition Between Rheumatoid Arthritis and Osteoarthritis Patients.},
author = {Lee JY, Mannaa M, Kim Y, Kim J, Kim GT, Seo YS.},
journal = {Genes (Basel)},
year = {2019},
doi = {10.3390/genes10100748},
pmid = {31557878}
}
@article{lin283572,
title = {The Compromised Mucosal Immune System of beta7 Integrin-Deficient Mice Has Only Minor Effects on the Fecal Microbiota in Homeostasis.},
author = {Babbar A, Hitch TCA, Pabst O, Clavel T, Hubel J, Eswaran S, Wagner N, Schippers A.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.02284},
pmid = {31636620}
}
@article{lin283566,
title = {Changes in human gut microbiota composition are linked to the energy metabolic switch during 10 d of Buchinger fasting.},
author = {Mesnage R, Grundler F, Schwiertz A, Le Maho Y, Wilhelmi de Toledo F.},
journal = {J Nutr Sci},
year = {2019},
doi = {10.1017/jns.2019.33},
pmid = {31798864}
}
@article{lin283534,
title = {Probiotic-directed modulation of gut microbiota is basal microbiome dependent.},
author = {Hou Q, Zhao F, Liu W, Lv R, Khine WWT, Han J, Sun Z, Lee YK, Zhang H.},
journal = {Gut Microbes},
year = {2020},
doi = {10.1080/19490976.2020.1736974},
pmid = {32200683}
}
@article{lin283504,
title = {Characteristics of the Gut Microbiome of Healthy Young Male Soldiers in South Korea: The Effects of Smoking.},
author = {Yoon H, Lee DH, Lee JH, Kwon JE, Shin CM, Yang SJ, Park SH, Lee JH, Kang SW, Lee JS, Kim BY.},
journal = {Gut Liver},
year = {2021},
doi = {10.5009/gnl19354},
pmid = {32390407}
}
@article{lin283585,
title = {Functional and Genomic Variation between Human-Derived Isolates of Lachnospiraceae Reveals Inter- and Intra-Species Diversity.},
author = {Sorbara MT, Littmann ER, Fontana E, Moody TU, Kohout CE, Gjonbalaj M, Eaton V, Seok R, Leiner IM, Pamer EG.},
journal = {Cell Host Microbe},
year = {2020},
doi = {10.1016/j.chom.2020.05.005},
pmid = {32492369}
}
@article{lin283580,
title = {A Review of the Effects of Natural Compounds, Medicinal Plants, and Mushrooms on the Gut Microbiota in Colitis and Cancer.},
author = {Cheung MK, Yue GGL, Chiu PWY, Lau CBS.},
journal = {Front Pharmacol},
year = {2020},
doi = {10.3389/fphar.2020.00744},
pmid = {32499711}
}
@article{lin283568,
title = {Changes in the Intestinal Microbiota of Patients with Inflammatory Bowel Disease with Clinical Remission during an 8-Week Infliximab Infusion Cycle.},
author = {Seong G, Kim N, Joung JG, Kim ER, Chang DK, Chun J, Hong SN, Kim YH.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8060874},
pmid = {32527024}
}
@article{lin283532,
title = {Development of a Novel Metagenomic Biomarker for Prediction of Upper Gastrointestinal Tract Involvement in Patients With Crohn's Disease.},
author = {Kwak MS, Cha JM, Shin HP, Jeon JW, Yoon JY.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.01162},
pmid = {32582102}
}
@article{lin283623,
title = {High-resolution temporal profiling of the human gut microbiome reveals consistent and cascading alterations in response to dietary glycans.},
author = {Creswell R, Tan J, Leff JW, Brooks B, Mahowald MA, Thieroff-Ekerdt R, Gerber GK.},
journal = {Genome Med},
year = {2020},
doi = {10.1186/s13073-020-00758-x},
pmid = {32620143}
}
@article{lin283607,
title = {Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools.},
author = {Derakhshani H, Bernier SP, Marko VA, Surette MG.},
journal = {BMC Genomics},
year = {2020},
doi = {10.1186/s12864-020-06910-6},
pmid = {32727443}
}
@article{lin283558,
title = {Developmental differences in the intestinal microbiota of Chinese 1-year-old infants and 4-year-old children.},
author = {Guo M, Miao M, Wang Y, Duan M, Yang F, Chen Y, Yuan W, Zheng H.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-76591-4},
pmid = {33173227}
}
@article{lin283608,
title = {Characterization of fungal and bacterial dysbiosis in young adult Chinese patients with Crohn's disease.},
author = {Qiu X, Zhao X, Cui X, Mao X, Tang N, Jiao C, Wang D, Zhang Y, Ye Z, Zhang H.},
journal = {Therap Adv Gastroenterol},
year = {2020},
doi = {10.1177/1756284820971202},
pmid = {33240394}
}
@article{lin283495,
title = {Probiotic consumption relieved human stress and anxiety symptoms possibly via modulating the neuroactive potential of the gut microbiota.},
author = {Ma T, Jin H, Kwok LY, Sun Z, Liong MT, Zhang H.},
journal = {Neurobiol Stress},
year = {2021},
doi = {10.1016/j.ynstr.2021.100294},
pmid = {33511258}
}
@article{lin283570,
title = {Alterations of Gastric Microbiota in Gastric Cancer and Precancerous Stages.},
author = {Zhang X, Li C, Cao W, Zhang Z.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.559148},
pmid = {33747975}
}
@article{lin283430,
title = {Study of microbiome changes in patients with ulcerative colitis in the Central European part of Russia.},
author = {Gryaznova MV, Solodskikh SA, Panevina AV, Syromyatnikov MY, Dvoretskaya YD, Sviridova TN, Popov ES, Popov VN.},
journal = {Heliyon},
year = {2021},
doi = {10.1016/j.heliyon.2021.e06432},
pmid = {33748490}
}
@article{lin283564,
title = {Running after ghosts: are dead bacteria the dark matter of the human gut microbiota?},
author = {Bellali S, Lagier JC, Million M, Anani H, Haddad G, Francis R, Kuete Yimagou E, Khelaifia S, Levasseur A, Raoult D, Bou Khalil J.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1897208},
pmid = {33757378}
}
@article{lin283476,
title = {Influence of Short-Term Consumption of Hericium erinaceus on Serum Biochemical Markers and the Changes of the Gut Microbiota: A Pilot Study.},
author = {Xie XQ, Geng Y, Guan Q, Ren Y, Guo L, Lv Q, Lu ZM, Shi JS, Xu ZH.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13031008},
pmid = {33800983}
}
@article{lin283618,
title = {Metformin Strongly Affects Gut Microbiome Composition in High-Fat Diet-Induced Type 2 Diabetes Mouse Model of Both Sexes.},
author = {Silamikele L, Silamikelis I, Ustinova M, Kalnina Z, Elbere I, Petrovska R, Kalnina I, Klovins J.},
journal = {Front Endocrinol (Lausanne)},
year = {2021},
doi = {10.3389/fendo.2021.626359},
pmid = {33815284}
}
@article{lin283611,
title = {Gut Microbiome of Indonesian Adults Associated with Obesity and Type 2 Diabetes: A Cross-Sectional Study in an Asian City, Yogyakarta.},
author = {Therdtatha P, Song Y, Tanaka M, Mariyatun M, Almunifah M, Manurung NEP, Indriarsih S, Lu Y, Nagata K, Fukami K, Ikeda T, Lee YK, Rahayu ES, Nakayama J.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9050897},
pmid = {33922321}
}
@article{lin283577,
title = {16S rDNA Full-Length Assembly Sequencing Technology Analysis of Intestinal Microbiome in Polycystic Ovary Syndrome.},
author = {Dong S, Jiao J, Jia S, Li G, Zhang W, Yang K, Wang Z, Liu C, Li D, Wang X.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.634981},
pmid = {34041041}
}
@article{lin283609,
title = {A Combined Analysis of Gut and Skin Microbiota in Infants with Food Allergy and Atopic Dermatitis: A Pilot Study.},
author = {Los-Rycharska E, Golebiewski M, Sikora M, Grzybowski T, Gorzkiewicz M, Popielarz M, Gawryjolek J, Krogulska A.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13051682},
pmid = {34063398}
}
@article{lin283616,
title = {B Cells and Microbiota in Autoimmunity.},
author = {Botia-Sanchez M, Alarcon-Riquelme ME, Galicia G.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22094846},
pmid = {34063669}
}
@article{lin283613,
title = {Ecological Adaptation and Succession of Human Fecal Microbial Communities in an Automated In Vitro Fermentation System.},
author = {Gnanasekaran T, Assis Geraldo J, Ahrenkiel DW, Alvarez-Silva C, Saenz C, Khan A, Hanteer O, Gunalan V, Trost K, Moritz T, Arumugam M.},
journal = {mSystems},
year = {2021},
doi = {10.1128/msystems.00232-21},
pmid = {34313459}
}
@article{lin283591,
title = {HumGut: a comprehensive human gut prokaryotic genomes collection filtered by metagenome data.},
author = {Hiseni P, Rudi K, Wilson RC, Hegge FT, Snipen L.},
journal = {Microbiome},
year = {2021},
doi = {10.1186/s40168-021-01114-w},
pmid = {34330336}
}
@article{lin283481,
title = {Characteristics of gut microbiota in people with obesity.},
author = {Duan M, Wang Y, Zhang Q, Zou R, Guo M, Zheng H.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0255446},
pmid = {34375351}
}
@article{lin283625,
title = {Multi-targeted properties of the probiotic saccharomyces cerevisiae CNCM I-3856 against enterotoxigenic escherichia coli (ETEC) H10407 pathogenesis across human gut models.},
author = {Roussel C, De Paepe K, Galia W, de Bodt J, Chalancon S, Denis S, Leriche F, Vandekerkove P, Ballet N, Blanquet-Diot S, Van de Wiele T.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1953246},
pmid = {34432600}
}
@article{lin283606,
title = {Flavonoid-Modifying Capabilities of the Human Gut Microbiome-An In Silico Study.},
author = {Goris T, Cuadrat RRC, Braune A.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13082688},
pmid = {34444848}
}
@article{lin283423,
title = {The gut microbial diversity of colon cancer patients and the clinical significance.},
author = {He T, Cheng X, Xing C.},
journal = {Bioengineered},
year = {2021},
doi = {10.1080/21655979.2021.1972077},
pmid = {34551683}
}
@article{lin283540,
title = {Fine Carbohydrate Structure of Dietary Resistant Glucans Governs the Structure and Function of Human Gut Microbiota.},
author = {Romero Marcia AD, Yao T, Chen MH, Oles RE, Lindemann SR.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13092924},
pmid = {34578800}
}
@article{lin283584,
title = {Chitin Glucan Shifts Luminal and Mucosal Microbial Communities, Improve Epithelial Barrier and Modulates Cytokine Production In Vitro.},
author = {Calatayud M, Verstrepen L, Ghyselinck J, Van den Abbeele P, Marzorati M, Modica S, Ranjanoro T, Maquet V.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13093249},
pmid = {34579126}
}
@article{lin283594,
title = {Chitosan Oligosaccharide Ameliorates Metabolic Syndrome Induced by Overnutrition via Altering Intestinal Microbiota.},
author = {Wang Y, Liu S, Tang D, Dong R, Feng Q.},
journal = {Front Nutr},
year = {2021},
doi = {10.3389/fnut.2021.743492},
pmid = {34660667}
}
@article{lin283589,
title = {Combined metabolic activators therapy ameliorates liver fat in nonalcoholic fatty liver disease patients.},
author = {Zeybel M, Altay O, Arif M, Li X, Yang H, Fredolini C, Akyildiz M, Saglam B, Gonenli MG, Ural D, Kim W, Schwenk JM, Zhang C, Shoaie S, Nielsen J, Uhlen M, Boren J, Mardinoglu A.},
journal = {Mol Syst Biol},
year = {2021},
doi = {10.15252/msb.202110459},
pmid = {34694070}
}
@article{lin283600,
title = {Impacts of Cigarette Smoking Status on Metabolomic and Gut Microbiota Profile in Male Patients With Coronary Artery Disease: A Multi-Omics Study.},
author = {Hu X, Fan Y, Li H, Zhou R, Zhao X, Sun Y, Zhang S.},
journal = {Front Cardiovasc Med},
year = {2021},
doi = {10.3389/fcvm.2021.766739},
pmid = {34778417}
}
@article{lin283590,
title = {Two microbiota subtypes identified in irritable bowel syndrome with distinct responses to the low FODMAP diet.},
author = {Vervier K, Moss S, Kumar N, Adoum A, Barne M, Browne H, Kaser A, Kiely CJ, Neville BA, Powell N, Raine T, Stares MD, Zhu A, De La Revilla Negro J, Lawley TD, Parkes M.},
journal = {Gut},
year = {2022},
doi = {10.1136/gutjnl-2021-325177},
pmid = {34810234}
}
@article{lin283571,
title = {Structural and Biochemical Basis of a Marine Bacterial Glycoside Hydrolase Family 2 beta-Glycosidase with Broad Substrate Specificity.},
author = {Yang J, Li S, Liu Y, Li R, Long L.},
journal = {Appl Environ Microbiol},
year = {2022},
doi = {10.1128/aem.02226-21},
pmid = {34818100}
}
@article{lin283395,
title = {Tianwang Buxin Granules Influence the Intestinal Flora in Perimenopausal Insomnia.},
author = {Yang X, Xiao H, Zeng Y, Huang L, Ji K, Deng D, Yang W, Liu L.},
journal = {Biomed Res Int},
year = {2021},
doi = {10.1155/2021/9979511},
pmid = {34825005}
}
@article{lin283599,
title = {Effects of Resistant Starch on Symptoms, Fecal Markers, and Gut Microbiota in Parkinson's Disease - The RESISTA-PD Trial.},
author = {Becker A, Schmartz GP, Groger L, Grammes N, Galata V, Philippeit H, Weiland J, Ludwig N, Meese E, Tierling S, Walter J, Schwiertz A, Spiegel J, Wagenpfeil G, Fassbender K, Keller A, Unger MM.},
journal = {Genomics Proteomics Bioinformatics},
year = {2022},
doi = {10.1016/j.gpb.2021.08.009},
pmid = {34839011}
}
@article{lin283491,
title = {[Dysbiosis of Gut Microbiota in Patients with Post-Stroke Cognitive Impairment].},
author = {Feng RJ, Yu Q, Li Y, Feng D, Li YM.},
journal = {Sichuan Da Xue Xue Bao Yi Xue Ban},
year = {2021},
doi = {10.12182/20211160507},
pmid = {34841763}
}
@article{lin283581,
title = {Helminth-Induced Human Gastrointestinal Dysbiosis: a Systematic Review and Meta-Analysis Reveals Insights into Altered Taxon Diversity and Microbial Gradient Collapse.},
author = {Kupritz J, Angelova A, Nutman TB, Gazzinelli-Guimaraes PH.},
journal = {mBio},
year = {2021},
doi = {10.1128/mbio.02890-21},
pmid = {34933444}
}
@article{lin283526,
title = {Dysbiosis and relapse-related microbiome in inflammatory bowel disease: A shotgun metagenomic approach.},
author = {Serrano-Gomez G, Mayorga L, Oyarzun I, Roca J, Borruel N, Casellas F, Varela E, Pozuelo M, Machiels K, Guarner F, Vermeire S, Manichanh C.},
journal = {Comput Struct Biotechnol J},
year = {2021},
doi = {10.1016/j.csbj.2021.11.037},
pmid = {34938418}
}
@article{lin283511,
title = {Nutraceuticals and Herbal Food Supplements for Weight Loss: Is There a Prebiotic Role in the Mechanism of Action?},
author = {Bertuccioli A, Cardinali M, Biagi M, Moricoli S, Morganti I, Zonzini GB, Rigillo G.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9122427},
pmid = {34946029}
}
@article{lin283598,
title = {Species-Level Analysis of the Human Gut Microbiome Shows Antibiotic Resistance Genes Associated With Colorectal Cancer.},
author = {Liu C, Li Z, Ding J, Zhen H, Fang M, Nie C.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.765291},
pmid = {34975790}
}
@article{lin283569,
title = {Alterations of Gut Microbiome and Serum Metabolome in Coronary Artery Disease Patients Complicated With Non-alcoholic Fatty Liver Disease Are Associated With Adverse Cardiovascular Outcomes.},
author = {Hu X, Zhou R, Li H, Zhao X, Sun Y, Fan Y, Zhang S.},
journal = {Front Cardiovasc Med},
year = {2021},
doi = {10.3389/fcvm.2021.805812},
pmid = {35047580}
}
@article{lin283448,
title = {Clinical response and changes in the fecal microbiota and metabolite levels after fecal microbiota transplantation in patients with inflammatory bowel disease and recurrent Clostridioides difficile infection.},
author = {Osaki H, Jodai Y, Koyama K, Omori T, Horiguchi N, Kamano T, Funasaka K, Nagasaka M, Nakagawa Y, Shibata T, Ohmiya N.},
journal = {Fujita Med J},
year = {2021},
doi = {10.20407/fmj.2020-021},
pmid = {35111551}
}
@article{lin283386,
title = {[Effects of diet on the gut microbiome in patients with depression].},
author = {Zorkina YA, Syunyakov TS, Abramova OV, Yunes RA, Averina OV, Kovtun AS, Angelova IY, Khobta EB, Susloparova DA, Pavlichenko AV, Karpenko OA, Andreyuk DS, Tovmasyan AS, Danilenko VN, Gurina OI, Kostyuk GP, Morozova AY.},
journal = {Zh Nevrol Psikhiatr Im S S Korsakova},
year = {2022},
doi = {10.17116/jnevro202212201259},
pmid = {35238513}
}
@article{lin283497,
title = {Increasing the diversity of dietary fibers in a daily-consumed bread modifies gut microbiota and metabolic profile in subjects at cardiometabolic risk.},
author = {Ranaivo H, Thirion F, Bera-Maillet C, Guilly S, Simon C, Sothier M, Van Den Berghe L, Feugier-Favier N, Lambert-Porcheron S, Dussous I, Roger L, Roume H, Galleron N, Pons N, Le Chatelier E, Ehrlich SD, Laville M, Dore J, Nazare JA.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2022.2044722},
pmid = {35311446}
}
@article{lin283522,
title = {Dietary manipulation of the gut microbiome in inflammatory bowel disease patients: Pilot study.},
author = {Olendzki B, Bucci V, Cawley C, Maserati R, McManus M, Olednzki E, Madziar C, Chiang D, Ward DV, Pellish R, Foley C, Bhattarai S, McCormick BA, Maldonado-Contreras A.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2022.2046244},
pmid = {35311458}
}
@article{lin283502,
title = {Development and Optimization of CRISPR Prime Editing System in Photoautotrophic Cells.},
author = {Jiang Z, Abdullah, Zhang S, Jiang Y, Liu R, Xiao Y.},
journal = {Molecules},
year = {2022},
doi = {10.3390/molecules27061758},
pmid = {35335122}
}
@article{lin283415,
title = {Insights from shotgun metagenomics into bacterial species and metabolic pathways associated with NAFLD in obese youth.},
author = {Testerman T, Li Z, Galuppo B, Graf J, Santoro N.},
journal = {Hepatol Commun},
year = {2022},
doi = {10.1002/hep4.1944},
pmid = {35344283}
}
@article{lin283542,
title = {Comparative Analysis of Gut Microbiota in Centenarians and Young People: Impact of Eating Habits and Childhood Living Environment.},
author = {Sepp E, Smidt I, Roop T, Stsepetova J, Koljalg S, Mikelsaar M, Soidla I, Ainsaar M, Kolk H, Vallas M, Jaagura M, Mandar R.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.851404},
pmid = {35372105}
}
@article{lin283510,
title = {Modern Metaproteomics: A Unique Tool to Characterize the Active Microbiome in Health and Diseases, and Pave the Road towards New Biomarkers-Example of Crohn's Disease and Ulcerative Colitis Flare-Ups.},
author = {Henry C, Bassignani A, Berland M, Langella O, Sokol H, Juste C.},
journal = {Cells},
year = {2022},
doi = {10.3390/cells11081340},
pmid = {35456018}
}
@article{lin283549,
title = {Resistant Maltodextrin Intake Reduces Virulent Metabolites in the Gut Environment: A Randomized Control Study in a Japanese Cohort.},
author = {Nishimoto Y, Mizuguchi Y, Mori Y, Ito M, Miyazato S, Kishimoto Y, Yamada T, Fukuda S.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.644146},
pmid = {35602030}
}
@article{lin283574,
title = {A 4-Week Diet Low or High in Advanced Glycation Endproducts Has Limited Impact on Gut Microbial Composition in Abdominally Obese Individuals: The deAGEing Trial.},
author = {Linkens AMA, van Best N, Niessen PM, Wijckmans NEG, de Goei EEC, Scheijen JLJM, van Dongen MCJM, van Gool CCJAW, de Vos WM, Houben AJHM, Stehouwer CDA, Eussen SJMP, Penders J, Schalkwijk CG.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms23105328},
pmid = {35628138}
}
@article{lin283552,
title = {Systematic review of donor and recipient predictive biomarkers of response to faecal microbiota transplantation in patients with ulcerative colitis.},
author = {Rees NP, Shaheen W, Quince C, Tselepis C, Horniblow RD, Sharma N, Beggs AD, Iqbal TH, Quraishi MN.},
journal = {EBioMedicine},
year = {2022},
doi = {10.1016/j.ebiom.2022.104088},
pmid = {35660786}
}
@article{lin283546,
title = {Short- and long-read metagenomics expand individualized structural variations in gut microbiomes.},
author = {Chen L, Zhao N, Cao J, Liu X, Xu J, Ma Y, Yu Y, Zhang X, Zhang W, Guan X, Yu X, Liu Z, Fan Y, Wang Y, Liang F, Wang D, Zhao L, Song M, Wang J.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-30857-9},
pmid = {35676264}
}
@article{lin283388,
title = {Resistant Maltodextrin Consumption in a Double-Blind, Randomized, Crossover Clinical Trial Induces Specific Changes in Potentially Beneficial Gut Bacteria.},
author = {Mai V, Burns AM, Solch RJ, Dennis-Wall JC, Ukhanova M, Langkamp-Henken B.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14112192},
pmid = {35683992}
}
@article{lin283550,
title = {Novel Insights into the Pig Gut Microbiome Using Metagenome-Assembled Genomes.},
author = {Holman DB, Kommadath A, Tingley JP, Abbott DW.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.02380-22},
pmid = {35880887}
}
@article{lin283489,
title = {Longitudinal fecal microbiome and metabolite data demonstrate rapid shifts and subsequent stabilization after an abrupt dietary change in healthy adult dogs.},
author = {Lin CY, Jha AR, Oba PM, Yotis SM, Shmalberg J, Honaker RW, Swanson KS.},
journal = {Anim Microbiome},
year = {2022},
doi = {10.1186/s42523-022-00194-9},
pmid = {35915514}
}
@article{lin283575,
title = {Antibiotic and antifungal use in pediatric leukemia and lymphoma patients are associated with increasing opportunistic pathogens and decreasing bacteria responsible for activities that enhance colonic defense.},
author = {Dunn KA, MacDonald T, Rodrigues GJ, Forbrigger Z, Bielawski JP, Langille MGI, Van Limbergen J, Kulkarni K.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.924707},
pmid = {35967843}
}
@article{lin283505,
title = {Gut microbiota in systemic lupus erythematosus patients and lupus mouse model: a cross species comparative analysis for biomarker discovery.},
author = {Toumi E, Goutorbe B, Plauzolles A, Bonnet M, Mezouar S, Militello M, Mege JL, Chiche L, Halfon P.},
journal = {Front Immunol},
year = {2022},
doi = {10.3389/fimmu.2022.943241},
pmid = {35983031}
}
@article{lin283439,
title = {Alterations of the Gut Microbiome in Patients With Pituitary Adenoma.},
author = {Hu J, Yang J, Chen L, Meng X, Zhang X, Li W, Li Z, Huang G.},
journal = {Pathol Oncol Res},
year = {2022},
doi = {10.3389/pore.2022.1610402},
pmid = {35991836}
}
@article{lin283509,
title = {Dissecting the role of the human microbiome in COVID-19 via metagenome-assembled genomes.},
author = {Ke S, Weiss ST, Liu YY.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-32991-w},
pmid = {36068270}
}
@article{lin283442,
title = {Dynamics of the Gut Microbiome in Shigella-Infected Children during the First Two Years of Life.},
author = {Ndungo E, Holm JB, Gama S, Buchwald AG, Tennant SM, Laufer MK, Pasetti MF, Rasko DA.},
journal = {mSystems},
year = {2022},
doi = {10.1128/msystems.00442-22},
pmid = {36121169}
}
@article{lin283525,
title = {Intercontinental Gut Microbiome Variances in IBD.},
author = {Mayorga L, Serrano-Gomez G, Xie Z, Borruel N, Manichanh C.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms231810868},
pmid = {36142786}
}
@article{lin283551,
title = {Multi-angle meta-analysis of the gut microbiome in Autism Spectrum Disorder: a step toward understanding patient subgroups.},
author = {West KA, Yin X, Rutherford EM, Wee B, Choi J, Chrisman BS, Dunlap KL, Hannibal RL, Hartono W, Lin M, Raack E, Sabino K, Wu Y, Wall DP, David MM, Dabbagh K, DeSantis TZ, Iwai S.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-21327-9},
pmid = {36220843}
}
@article{lin283610,
title = {Correlation of gut microbiota and metabolic functions with the antibody response to the BBIBP-CorV vaccine.},
author = {Tang B, Tang L, He W, Jiang X, Hu C, Li Y, Zhang Y, Pang K, Lei Y, Li S, Liu S, Wang S, Yang M, Li Z, Zhao F, Yang S.},
journal = {Cell Rep Med},
year = {2022},
doi = {10.1016/j.xcrm.2022.100752},
pmid = {36228621}
}
@article{lin283524,
title = {Revealing bacteria-phage interactions in human microbiome through the CRISPR-Cas immune systems.},
author = {Monshizadeh M, Zomorodi S, Mortensen K, Ye Y.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.933516},
pmid = {36250060}
}
@article{lin283436,
title = {Compositional Changes in the Gut Microbiota of Responders and Non-responders to Probiotic Treatment Among Patients With Diarrhea-predominant Irritable Bowel Syndrome: A Post Hoc Analysis of a Randomized Clinical Trial.},
author = {Shin SY, Park S, Moon JM, Kim K, Kim JW, Chun J, Lee TH, Choi CH, Microbiome Research Group of the Korean Society for Neurogastroenterology and Motility.},
journal = {J Neurogastroenterol Motil},
year = {2022},
doi = {10.5056/jnm21202},
pmid = {36250371}
}
@article{lin283592,
title = {The oral-gut axis: Salivary and fecal microbiome dysbiosis in patients with inflammatory bowel disease.},
author = {Abdelbary MMH, Hatting M, Bott A, Dahlhausen A, Keller D, Trautwein C, Conrads G.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.1010853},
pmid = {36275026}
}
@article{lin283559,
title = {Exclusive Enteral Nutrition Exerts Anti-Inflammatory Effects through Modulating Microbiota, Bile Acid Metabolism, and Immune Activities.},
author = {Xiao F, Gao X, Hu H, Le J, Chen Y, Shu X, Liang Z, Xu Y, Wang Y, Zhang T.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14214463},
pmid = {36364726}
}
@article{lin283597,
title = {Examining the Influence of the Human Gut Microbiota on Cognition and Stress: A Systematic Review of the Literature.},
author = {Cooke MB, Catchlove S, Tooley KL.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14214623},
pmid = {36364881}
}
@article{lin283586,
title = {Mode of delivery modulates the intestinal microbiota and impacts the response to vaccination.},
author = {de Koff EM, van Baarle D, van Houten MA, Reyman M, Berbers GAM, van den Ham F, Chu MLJN, Sanders EAM, Bogaert D, Fuentes S.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-34155-2},
pmid = {36380002}
}
@article{lin283475,
title = {Gut microbiota profile of COVID-19 patients: Prognosis and risk stratification (MicroCOVID-19 study).},
author = {Nobre JG, Delgadinho M, Silva C, Mendes J, Mateus V, Ribeiro E, Costa DA, Lopes M, Pedroso AI, Trigueiros F, Rodrigues MI, de Sousa CL, Brito M.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.1035422},
pmid = {36483197}
}
@article{lin283433,
title = {Alterations of the Human Gut Microbiome in Patients With Hidradenitis Suppurativa: A Case-control Study and Review of the Literature.},
author = {Ogut ND, Hascelik G, Atakan N.},
journal = {Dermatol Pract Concept},
year = {2022},
doi = {10.5826/dpc.1204a191},
pmid = {36534543}
}
@article{lin283547,
title = {Functional and Taxonomic Traits of the Gut Microbiota in Type 1 Diabetes Children at the Onset: A Metaproteomic Study.},
author = {Levi Mortera S, Marzano V, Vernocchi P, Matteoli MC, Guarrasi V, Gardini S, Del Chierico F, Rapini N, Deodati A, Fierabracci A, Cianfarani S, Putignani L.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms232415982},
pmid = {36555624}
}
@article{lin283472,
title = {Levofloxacin prophylaxis and parenteral nutrition have a detrimental effect on intestinal microbial networks in pediatric patients undergoing HSCT.},
author = {Fabbrini M, D'Amico F, Leardini D, Muratore E, Barone M, Belotti T, Forchielli ML, Zama D, Pession A, Prete A, Brigidi P, Rampelli S, Candela M, Turroni S, Masetti R.},
journal = {Commun Biol},
year = {2023},
doi = {10.1038/s42003-023-04436-7},
pmid = {36639555}
}
@article{lin283470,
title = {The gut-microbiota-brain axis in a Spanish population in the aftermath of the COVID-19 pandemic: microbiota composition linked to anxiety, trauma, and depression profiles.},
author = {Malan-Muller S, Valles-Colomer M, Palomo T, Leza JC.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2022.2162306},
pmid = {36651663}
}
@article{lin283464,
title = {Fecal and Tissue Microbiota Are Associated with Tumor T-Cell Infiltration and Mesenteric Lymph Node Involvement in Colorectal Cancer.},
author = {Luu K, Ye JY, Lagishetty V, Liang F, Hauer M, Sedighian F, Kwaan MR, Kazanjian KK, Hecht JR, Lin AY, Jacobs JP.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15020316},
pmid = {36678187}
}
@article{lin283457,
title = {Adjunctive Probio-X Treatment Enhances the Therapeutic Effect of a Conventional Drug in Managing Type 2 Diabetes Mellitus by Promoting Short-Chain Fatty Acid-Producing Bacteria and Bile Acid Pathways.},
author = {Chen Y, Shen X, Ma T, Yu X, Kwok LY, Li Y, Sun Z, Li D, Zhang H.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.01300-22},
pmid = {36688679}
}
@article{lin283603,
title = {Method for estimating disease risk from microbiome data using structural equation modeling.},
author = {Tokuno H, Itoga T, Kasuga J, Okuma K, Hasuko K, Masuyama H, Benno Y.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1035002},
pmid = {36778866}
}
@article{lin283579,
title = {Virulence Factors of the Gut Microbiome Are Associated with BMI and Metabolic Blood Parameters in Children with Obesity.},
author = {Murga-Garrido SM, Ulloa-Perez EJ, Diaz-Benitez CE, Orbe-Orihuela YC, Cornejo-Granados F, Ochoa-Leyva A, Sanchez-Flores A, Cruz M, Castaneda-Marquez AC, Plett-Torres T, Burguete Garcia AI, Lagunas-Martinez A.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.03382-22},
pmid = {36786619}
}
@article{lin283602,
title = {The diagnostic and prognostic potential of gut bacteria in inflammatory bowel disease.},
author = {Wiredu Ocansey DK, Hang S, Yuan X, Qian H, Zhou M, Valerie Olovo C, Zhang X, Mao F.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2176118},
pmid = {36794838}
}
@article{lin283492,
title = {An open label, non-randomized study assessing a prebiotic fiber intervention in a small cohort of Parkinson's disease participants.},
author = {Hall DA, Voigt RM, Cantu-Jungles TM, Hamaker B, Engen PA, Shaikh M, Raeisi S, Green SJ, Naqib A, Forsyth CB, Chen T, Manfready R, Ouyang B, Rasmussen HE, Sedghi S, Goetz CG, Keshavarzian A.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-36497-x},
pmid = {36801916}
}
@article{lin283477,
title = {Factors associated with the composition of the gut microbiome in patients with established rheumatoid arthritis and its value for predicting treatment responses.},
author = {Koh JH, Lee EH, Cha KH, Pan CH, Kim D, Kim WU.},
journal = {Arthritis Res Ther},
year = {2023},
doi = {10.1186/s13075-023-03013-x},
pmid = {36864473}
}
@article{lin283490,
title = {Alterations in faecal microbiome and resistome in Chinese international travellers: a metagenomic analysis.},
author = {Cheung MK, Ng RWY, Lai CKC, Zhu C, Au ETK, Yau JWK, Li C, Wong HC, Wong BCK, Kwok KO, Chen Z, Chan PKS, Lui GCY, Ip M.},
journal = {J Travel Med},
year = {2023},
doi = {10.1093/jtm/taad027},
pmid = {36864573}
}
@article{lin283483,
title = {Change in the Gut Microbiome and Immunity by Lacticaseibacillus rhamnosus Probio-M9.},
author = {Zhang M, Zheng Y, Sun Z, Cao C, Zhao W, Liu Y, Zhang W, Zhang H.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.03609-22},
pmid = {36912650}
}
@article{lin283378,
title = {Metagenomic association analysis of cognitive impairment in community-dwelling older adults.},
author = {Li J, Zhu S, Wang Y, Fan M, Dai J, Zhu C, Xu K, Cui M, Suo C, Jin L, Jiang Y, Chen X.},
journal = {Neurobiol Dis},
year = {2023},
doi = {10.1016/j.nbd.2023.106081},
pmid = {36931530}
}
@article{lin283563,
title = {The genomic landscape of reference genomes of cultivated human gut bacteria.},
author = {Lin X, Hu T, Chen J, Liang H, Zhou J, Wu Z, Ye C, Jin X, Xu X, Zhang W, Jing X, Yang T, Wang J, Yang H, Kristiansen K, Xiao L, Zou Y.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-37396-x},
pmid = {36966151}
}
@article{lin283461,
title = {Intermittent fasting modulates the intestinal microbiota and improves obesity and host energy metabolism.},
author = {Hu X, Xia K, Dai M, Han X, Yuan P, Liu J, Liu S, Jia F, Chen J, Jiang F, Yu J, Yang H, Wang J, Xu X, Jin X, Kristiansen K, Xiao L, Chen W, Han M, Duan S.},
journal = {NPJ Biofilms Microbiomes},
year = {2023},
doi = {10.1038/s41522-023-00386-4},
pmid = {37029135}
}
@article{lin283513,
title = {Gut microbiome alterations in patients with COVID-19-related coagulopathy.},
author = {Chen Y, Li X, Yu C, Wang E, Luo C, Jin Y, Zhang L, Ma Y, Jin Y, Yang L, Sun B, Qiao J, Zhou X, Rasche L, Einsele H, Song J, Bai T, Hou X.},
journal = {Ann Hematol},
year = {2023},
doi = {10.1007/s00277-023-05186-6},
pmid = {37039875}
}
@article{lin283629,
title = {Temporally resolved transcriptional recording in E. coli DNA using a Retro-Cascorder.},
author = {Lear SK, Lopez SC, Gonzalez-Delgado A, Bhattarai-Kline S, Shipman SL.},
journal = {Nat Protoc},
year = {2023},
doi = {10.1038/s41596-023-00819-6},
pmid = {37059915}
}
@article{lin283560,
title = {Characterization of the oral and gut microbiome in children with obesity aged 3 to 5 years.},
author = {Ma T, Wu Z, Lin J, Shan C, Abasijiang A, Zhao J.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1102650},
pmid = {37065198}
}
@article{lin283541,
title = {Reconstructing the landscape of gut microbial species across 29,000 diverse individuals.},
author = {Segota I, Watrous JD, Kantz ED, Nallamshetty S, Tiwari S, Cheng S, Jain M, Long T.},
journal = {Nucleic Acids Res},
year = {2023},
doi = {10.1093/nar/gkad249},
pmid = {37070603}
}
@article{lin283544,
title = {Epidemiological and microbiome associations of Clostridioides difficile carriage in infancy and early childhood.},
author = {Mani J, Levy S, Angelova A, Hazrati S, Fassnacht R, Subramanian P, Richards T, Niederhuber JE, Maxwell GL, Hourigan SK.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2203969},
pmid = {37096914}
}
@article{lin283562,
title = {Volatile Markers for Cancer in Exhaled Breath-Could They Be the Signature of the Gut Microbiota?},
author = {Bhandari MP, Polaka I, Vangravs R, Mezmale L, Veliks V, Kirshners A, Mochalski P, Dias-Neto E, Leja M.},
journal = {Molecules},
year = {2023},
doi = {10.3390/molecules28083488},
pmid = {37110724}
}
@article{lin283582,
title = {Influence of grape consumption on the human microbiome.},
author = {Dave A, Beyoglu D, Park EJ, Idle JR, Pezzuto JM.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-34813-5},
pmid = {37173385}
}
@article{lin283538,
title = {Characterization of Two Parabacteroides distasonis Candidate Strains as New Live Biotherapeutics against Obesity.},
author = {Cuffaro B, Boutillier D, Desramaut J, Jablaoui A, Werkmeister E, Trottein F, Waligora-Dupriet AJ, Rhimi M, Maguin E, Grangette C.},
journal = {Cells},
year = {2023},
doi = {10.3390/cells12091260},
pmid = {37174660}
}
@article{lin283503,
title = {Reverse transcriptases prime DNA synthesis.},
author = {Zabrady M, Zabrady K, Li AWH, Doherty AJ.},
journal = {Nucleic Acids Res},
year = {2023},
doi = {10.1093/nar/gkad478},
pmid = {37279911}
}
@article{lin283387,
title = {Prematurely delivering mothers show reductions of lachnospiraceae in their gut microbiomes.},
author = {Yang R, Li X, Ying Z, Zhao Z, Wang Y, Wang Q, Shen B, Peng W.},
journal = {BMC Microbiol},
year = {2023},
doi = {10.1186/s12866-023-02892-z},
pmid = {37322412}
}
@article{lin283424,
title = {Infant gut microbiota and environment associate with juvenile idiopathic arthritis many years prior to disease onset, especially in genetically vulnerable children.},
author = {Kindgren E, Ahrens AP, Triplett EW, Ludvigsson J.},
journal = {EBioMedicine},
year = {2023},
doi = {10.1016/j.ebiom.2023.104654},
pmid = {37329576}
}
@article{lin283605,
title = {Gut OncoMicrobiome Signatures (GOMS) as next-generation biomarkers for cancer immunotherapy.},
author = {Thomas AM, Fidelle M, Routy B, Kroemer G, Wargo JA, Segata N, Zitvogel L.},
journal = {Nat Rev Clin Oncol},
year = {2023},
doi = {10.1038/s41571-023-00785-8},
pmid = {37365438}
}
@article{lin283426,
title = {Metagenomic assessment of gut microbial communities and risk of severe COVID-19.},
author = {Nguyen LH, Okin D, Drew DA, Battista VM, Jesudasen SJ, Kuntz TM, Bhosle A, Thompson KN, Reinicke T, Lo CH, Woo JE, Caraballo A, Berra L, Vieira J, Huang CY, Das Adhikari U, Kim M, Sui HY, Magicheva-Gupta M, McIver L, Goldberg MB, Kwon DS, Huttenhower C, Chan AT, Lai PS.},
journal = {Genome Med},
year = {2023},
doi = {10.1186/s13073-023-01202-6},
pmid = {37438797}
}
@article{lin283519,
title = {A microbial causal mediation analytic tool for health disparity and applications in body mass index.},
author = {Wang C, Ahn J, Tarpey T, Yi SS, Hayes RB, Li H.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01608-9},
pmid = {37496080}
}
@article{lin283403,
title = {Fecal Microbiota and Associated Volatile Organic Compounds Distinguishing No-Adenoma from High-Risk Colon Adenoma Adults.},
author = {Katsaounou K, Yiannakou D, Nikolaou E, Brown C, Vogazianos P, Aristodimou A, Chi J, Costeas P, Agapiou A, Frangou E, Tsiaoussis G, Potamitis G, Antoniades A, Shammas C, Apidianakis Y.},
journal = {Metabolites},
year = {2023},
doi = {10.3390/metabo13070819},
pmid = {37512526}
}
@article{lin283596,
title = {Robust cross-cohort gut microbiome associations with COVID-19 severity.},
author = {Li J, Li J, Ghosh TS, McCann R, Mallon P, Hill C, Draper L, Schult D, Fanning LJ, Shannon R, Sadlier C, Horgan M, O'Mahony L, O'Toole PW.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2242615},
pmid = {37550964}
}
@article{lin283500,
title = {Identification of robust and generalizable biomarkers for microbiome-based stratification in lifestyle interventions.},
author = {Chen J, Siliceo SL, Ni Y, Nielsen HB, Xu A, Panagiotou G.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01604-z},
pmid = {37553697}
}
@article{lin283512,
title = {Gut microbial beta-glucuronidase: a vital regulator in female estrogen metabolism.},
author = {Hu S, Ding Q, Zhang W, Kang M, Ma J, Zhao L.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2236749},
pmid = {37559394}
}
@article{lin283561,
title = {Delayed gut microbiota maturation in the first year of life is a hallmark of pediatric allergic disease.},
author = {Hoskinson C, Dai DLY, Del Bel KL, Becker AB, Moraes TJ, Mandhane PJ, Finlay BB, Simons E, Kozyrskyj AL, Azad MB, Subbarao P, Petersen C, Turvey SE.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-40336-4},
pmid = {37644001}
}
@article{lin283463,
title = {Gut Microbiota Alterations and Their Functional Differences in Depression According to Enterotypes in Asian Individuals.},
author = {Park S, Li C, Wu X, Zhang T.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms241713329},
pmid = {37686135}
}
@article{lin283516,
title = {Composition and functional profiles of gut microbiota reflect the treatment stage, severity, and etiology of acute pancreatitis.},
author = {Wang Z, Guo M, Li J, Jiang C, Yang S, Zheng S, Li M, Ai X, Xu X, Zhang W, He X, Wang Y, Chen Y.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.00829-23},
pmid = {37698429}
}
@article{lin283545,
title = {An extended catalog of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny.},
author = {Dikareva E, Matharu D, Lahtinen E, Kolho KL, De Vos WM, Salonen A, Ponsero AJ.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1254535},
pmid = {37731926}
}
@article{lin283557,
title = {Pharmacological and Nutritional Modulation of Metabolome and Metagenome in Cardiometabolic Disorders.},
author = {Witkowska AM, Salem JE.},
journal = {Biomolecules},
year = {2023},
doi = {10.3390/biom13091340},
pmid = {37759740}
}
@article{lin283447,
title = {Characterisation of Indian gut microbiome for B-vitamin production and its comparison with Chinese cohort.},
author = {Chandel N, Somvanshi PR, Thakur V.},
journal = {Br J Nutr},
year = {2024},
doi = {10.1017/s0007114523002179},
pmid = {37781761}
}
@article{lin283537,
title = {Weight Loss Promotion in Individuals with Obesity through Gut Microbiota Alterations with a Multiphase Modified Ketogenic Diet.},
author = {Wang H, Lv X, Zhao S, Yuan W, Zhou Q, Sadiq FA, Zhao J, Lu W, Wu W.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15194163},
pmid = {37836447}
}
@article{lin283565,
title = {Dynamics and ecological reassembly of the human gut microbiome and the host metabolome in response to prolonged fasting.},
author = {Sang X, Li S, Guo R, Yan Q, Liu C, Zhang Y, Lv Q, Wu L, Ma J, You W, Feng L, Sun W.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1265425},
pmid = {37854337}
}
@article{lin283474,
title = {Epithelial Dual Oxidase 2 Shapes the Mucosal Microbiome and Contributes to Inflammatory Susceptibility.},
author = {Castrillon-Betancur JC, Lopez-Agudelo VA, Sommer N, Cleeves S, Bernardes JP, Weber-Stiehl S, Rosenstiel P, Sommer F.},
journal = {Antioxidants (Basel)},
year = {2023},
doi = {10.3390/antiox12101889},
pmid = {37891968}
}
@article{lin283498,
title = {Multiomics Revealed the Multi-Dimensional Effects of Late Sleep on Gut Microbiota and Metabolites in Children in Northwest China.},
author = {Xiang X, Chen J, Zhu M, Gao H, Liu X, Wang Q, Wang Q.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15204315},
pmid = {37892391}
}
@article{lin283499,
title = {Analysis of the gut microbiota in children with gastroesophageal reflux disease using metagenomics and metabolomics.},
author = {Ye X, Yu F, Zhou J, Zhao C, Wu J, Ni X.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1267192},
pmid = {37900308}
}
@article{lin283517,
title = {Fecal short-chain fatty acids in non-constipated irritable bowel syndrome: a potential clinically relevant stratification factor based on catabotyping analysis.},
author = {Gargari G, Mantegazza G, Taverniti V, Gardana C, Valenza A, Rossignoli F, Barbaro MR, Marasco G, Cremon C, Barbara G, Guglielmetti S.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2274128},
pmid = {37910479}
}
@article{lin283587,
title = {Critical evaluation of faecal microbiome preservation using metagenomic analysis.},
author = {Pribyl AL, Parks DH, Angel NZ, Boyd JA, Hasson AG, Fang L, MacDonald SL, Wills BA, Wood DLA, Krause L, Tyson GW, Hugenholtz P.},
journal = {ISME Commun},
year = {2021},
doi = {10.1038/s43705-021-00014-2},
pmid = {37938632}
}
@article{lin283373,
title = {A dietary intervention for postmenopausal hot flashes: A potential role of gut microbiome. An exploratory analysis.},
author = {Kahleova H, Holtz DN, Strom N, La Reau A, Kolipaka S, Schmidt N, Hata E, Znayenko-Miller T, Holubkov R, Barnard ND.},
journal = {Complement Ther Med},
year = {2023},
doi = {10.1016/j.ctim.2023.103002},
pmid = {37949415}
}
@article{lin283555,
title = {The pan-microbiome profiling system Taxa4Meta identifies clinical dysbiotic features and classifies diarrheal disease.},
author = {Wu Q, Badu S, So SY, Treangen TJ, Savidge TC.},
journal = {J Clin Invest},
year = {2024},
doi = {10.1172/jci170859},
pmid = {37962956}
}
@article{lin283548,
title = {Multi-site microbiota alteration is a hallmark of kidney stone formation.},
author = {Al KF, Joris BR, Daisley BA, Chmiel JA, Bjazevic J, Reid G, Gloor GB, Denstedt JD, Razvi H, Burton JP.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01703-x},
pmid = {38007438}
}
@article{lin283535,
title = {Gut microbiome biogeography in reindeer supersedes millennia of ecological and evolutionary separation.},
author = {Kamenova S, de Muinck EJ, Veiberg V, Utsi TA, Steyaert SMJG, Albon SD, Loe LE, Trosvik P.},
journal = {FEMS Microbiol Ecol},
year = {2023},
doi = {10.1093/femsec/fiad157},
pmid = {38031339}
}
@article{lin283452,
title = {Profiling of the intestinal community of Clostridia: taxonomy and evolutionary analysis.},
author = {Candeliere F, Musmeci E, Amaretti A, Sola L, Raimondi S, Rossi M.},
journal = {Microbiome Res Rep},
year = {2023},
doi = {10.20517/mrr.2022.19},
pmid = {38047279}
}
@article{lin283494,
title = {Validation of method for faecal sampling in cats and dogs for faecal microbiome analysis.},
author = {Langon X.},
journal = {BMC Vet Res},
year = {2023},
doi = {10.1186/s12917-023-03842-7},
pmid = {38102642}
}
@article{lin283454,
title = {Combined analysis of cross-population healthy adult human microbiome reveals consistent differences in gut microbial characteristics between Western and non-Western countries.},
author = {Sheng Y, Wang J, Gao Y, Peng Y, Li X, Huang W, Zhou H, Liu R, Zhang W.},
journal = {Comput Struct Biotechnol J},
year = {2024},
doi = {10.1016/j.csbj.2023.11.047},
pmid = {38116074}
}
@article{lin283478,
title = {The impact of gut microbiome enterotypes on ulcerative colitis: identifying key bacterial species and revealing species co-occurrence networks using machine learning.},
author = {Wu X, Zhang T, Zhang T, Park S.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2023.2292254},
pmid = {38117560}
}
@article{lin283508,
title = {Berberine-microbiota interplay: orchestrating gut health through modulation of the gut microbiota and metabolic transformation into bioactive metabolites.},
author = {Dehau T, Cherlet M, Croubels S, Van De Vliet M, Goossens E, Van Immerseel F.},
journal = {Front Pharmacol},
year = {2023},
doi = {10.3389/fphar.2023.1281090},
pmid = {38130410}
}
@article{lin283556,
title = {Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children.},
author = {Bonham KS, Fahur Bottino G, McCann SH, Beauchemin J, Weisse E, Barry F, Cano Lorente R, RESONANCE Consortium, Huttenhower C, Bruchhage M, D'Sa V, Deoni S, Klepac-Ceraj V.},
journal = {Sci Adv},
year = {2023},
doi = {10.1126/sciadv.adi0497},
pmid = {38134274}
}
@article{lin283501,
title = {Impact of Baizhu, Daqingye, and Hehuanhua extracts on the human gut microbiome.},
author = {Lemons JMS, Narrowe AB, Liu L, Firrman J, Mahalak KK, Van den Abbeele P, Baudot A, Deyaert S, Li Y, Yu LL.},
journal = {Front Cell Infect Microbiol},
year = {2023},
doi = {10.3389/fcimb.2023.1298392},
pmid = {38145049}
}
@article{lin283438,
title = {Metabolites of the gut microbiota may serve as precise diagnostic markers for sarcopenia in the elderly.},
author = {He Y, Cui W, Fang T, Zhang Z, Zeng M.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1301805},
pmid = {38188577}
}
@article{lin283455,
title = {Blending Three Probiotics Alleviates Loperamide-Induced Constipation in Sprague-Dawley (SD)-Rats.},
author = {Jang YJ, Moon JS, Kim JE, Kim D, Choi HS, Oh I.},
journal = {Food Sci Anim Resour},
year = {2024},
doi = {10.5851/kosfa.2023.e61},
pmid = {38229852}
}
@article{lin283527,
title = {Simulated digestions of free oligosaccharides and mucin-type O-glycans reveal a potential role for Clostridium perfringens.},
author = {McDonald AG, Lisacek F.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-023-51012-4},
pmid = {38238389}
}
@article{lin283414,
title = {The Trajectory of Successful Aging: Insights from Metagenome and Cytokine Profiling.},
author = {Chulenbayeva L, Ganzhula Y, Kozhakhmetov S, Jarmukhanov Z, Nurgaziyev M, Nurgozhina A, Muhanbetzhanov N, Sergazy S, Zhetkenev S, Borykbay Z, Tkachev V, Urazova S, Vinogradova E, Kushugulova A.},
journal = {Gerontology},
year = {2024},
doi = {10.1159/000536082},
pmid = {38246133}
}
@article{lin283496,
title = {A Long-Chain Dextran Produced by Weissella cibaria Boosts the Diversity of Health-Related Gut Microbes Ex Vivo.},
author = {Tintore M, Cune J, Vu LD, Poppe J, Van den Abbeele P, Baudot A, de Lecea C.},
journal = {Biology (Basel)},
year = {2024},
doi = {10.3390/biology13010051},
pmid = {38248481}
}
@article{lin283485,
title = {Unravelling the mechanisms of underweight in Parkinson's disease by investigating into the role of gut microbiome.},
author = {Shih LC, Lin RJ, Chen YL, Fu SC.},
journal = {NPJ Parkinsons Dis},
year = {2024},
doi = {10.1038/s41531-023-00587-w},
pmid = {38267447}
}
@article{lin283390,
title = {A Novel Multi-Strain E3 Probiotic Formula Improved the Gastrointestinal Symptoms and Quality of Life in Chinese Psoriasis Patients.},
author = {Siu PLK, Choy CT, Chan HHY, Leung RKK, Chan UK, Zhou J, Wong CH, Lee YW, Chan HW, Lo CJY, Tsui JCC, Loo SKF, Tsui SKW.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12010208},
pmid = {38276193}
}
@article{lin283380,
title = {Gut microbiota and clinical response to immune checkpoint inhibitor therapy in patients with advanced cancer.},
author = {Chang JW, Hsieh JJ, Tsai CY, Chiu HY, Lin YF, Wu CE, Shen YC, Hou MM, Chang CY, Chen JA, Chen CL, Chiu CT, Yeh YM, Chiu CH.},
journal = {Biomed J},
year = {2024},
doi = {10.1016/j.bj.2024.100698},
pmid = {38280521}
}
@article{lin283593,
title = {Collinsella aerofaciens linked with increased ethanol production and liver inflammation contribute to the pathophysiology of NAFLD.},
author = {Purohit A, Kandiyal B, Kumar S, Pragasam AK, Kamboj P, Talukdar D, Verma J, Sharma V, Sarkar S, Mahajan D, Yadav R, Ahmed R, Nanda R, Dikshit M, Banerjee SK, Shalimar, Das B.},
journal = {iScience},
year = {2024},
doi = {10.1016/j.isci.2023.108764},
pmid = {38313048}
}
@article{lin283493,
title = {Unveiling the connection between gut microbiome and metabolic health in individuals with chronic spinal cord injury.},
author = {Li J, Barnes S, Lefkowitz E, Yarar-Fisher C.},
journal = {Physiol Genomics},
year = {2024},
doi = {10.1152/physiolgenomics.00107.2023},
pmid = {38344780}
}
@article{lin283612,
title = {Longitudinal gut microbiome changes in immune checkpoint blockade-treated advanced melanoma.},
author = {Bjork JR, Bolte LA, Maltez Thomas A, Lee KA, Rossi N, Wind TT, Smit LM, Armanini F, Asnicar F, Blanco-Miguez A, Board R, Calbet-Llopart N, Derosa L, Dhomen N, Brooks K, Harland M, Harries M, Lorigan P, Manghi P, Marais R, Newton-Bishop J, Nezi L, Pinto F, Potrony M, Puig S, Serra-Bellver P, Shaw HM, Tamburini S, Valpione S, Waldron L, Zitvogel L, Zolfo M, de Vries EGE, Nathan P, Fehrmann RSN, Spector TD, Bataille V, Segata N, Hospers GAP, Weersma RK.},
journal = {Nat Med},
year = {2024},
doi = {10.1038/s41591-024-02803-3},
pmid = {38365950}
}
@article{lin283407,
title = {Microbiome features associated with performance measures in athletic and non-athletic individuals: A case-control study.},
author = {Huminska-Lisowska K, Zielinska K, Mieszkowski J, Michalowska-Sawczyn M, Cieszczyk P, Labaj PP, Wasag B, Fraczek B, Grzywacz A, Kochanowicz A, Kosciolek T.},
journal = {PLoS One},
year = {2024},
doi = {10.1371/journal.pone.0297858},
pmid = {38381714}
}
@article{lin283400,
title = {Alterations of the gut microbiome are associated with epigenetic age acceleration and physical fitness.},
author = {Torma F, Kerepesi C, Jokai M, Babszki G, Koltai E, Ligeti B, Kalcsevszki R, McGreevy KM, Horvath S, Radak Z.},
journal = {Aging Cell},
year = {2024},
doi = {10.1111/acel.14101},
pmid = {38414315}
}
@article{lin283536,
title = {Bisphenol A exposure affects specific gut taxa and drives microbiota dynamics in childhood obesity.},
author = {Lopez-Moreno A, Cerk K, Rodrigo L, Suarez A, Aguilera M, Ruiz-Rodriguez A.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00957-23},
pmid = {38426791}
}
@article{lin283468,
title = {The Predictive Value of Gut Microbiota Composition for Sustained Immunogenicity following Two Doses of CoronaVac.},
author = {Ng HY, Liao Y, Zhang R, Chan KH, To WP, Hui CH, Seto WK, Leung WK, Hung IFN, Lam TTY, Cheung KS.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25052583},
pmid = {38473829}
}
@article{lin283567,
title = {The Gut Microbiota in Parkinson Disease: Interactions with Drugs and Potential for Therapeutic Applications.},
author = {Menozzi E, Schapira AHV.},
journal = {CNS Drugs},
year = {2024},
doi = {10.1007/s40263-024-01073-4},
pmid = {38570412}
}
@article{lin283621,
title = {Mechanisms used for cDNA synthesis and site-specific integration of RNA into DNA genomes by a reverse transcriptase-Cas1 fusion protein.},
author = {Mohr G, Yao J, Park SK, Markham L, Lambowitz AM.},
journal = {Sci Adv},
year = {2024},
doi = {10.1126/sciadv.adk8791},
pmid = {38608016}
}
@article{lin283487,
title = {Swapping White for High-Fibre Bread Increases Faecal Abundance of Short-Chain Fatty Acid-Producing Bacteria and Microbiome Diversity: A Randomized, Controlled, Decentralized Trial.},
author = {Wang Y, Wymond B, Tandon H, Belobrajdic DP.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16070989},
pmid = {38613022}
}
@article{lin283488,
title = {Nonalcoholic Fatty Liver Disease: Changes in Gut Microbiota and Blood Lipids.},
author = {Yang K, Zeng J, Wu H, Liu H, Ding Z, Liang W, Wu L, Lin Z, Huang W, Xu J, Dong F.},
journal = {J Clin Transl Hepatol},
year = {2024},
doi = {10.14218/jcth.2023.00199},
pmid = {38638378}
}
@article{lin283539,
title = {Precision synbiotics increase gut microbiome diversity and improve gastrointestinal symptoms in a pilot open-label study for autism spectrum disorder.},
author = {Phan J, Calvo DC, Nair D, Jain S, Montagne T, Dietsche S, Blanchard K, Treadwell S, Adams J, Krajmalnik-Brown R.},
journal = {mSystems},
year = {2024},
doi = {10.1128/msystems.00503-24},
pmid = {38661344}
}
@article{lin283553,
title = {Gut microbiome composition and metabolic activity in women with diverticulitis.},
author = {Ma W, Wang Y, Nguyen LH, Mehta RS, Ha J, Bhosle A, Mclver LJ, Song M, Clish CB, Strate LL, Huttenhower C, Chan AT.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-47859-4},
pmid = {38684664}
}
@article{lin283615,
title = {Modulation of multiple sclerosis risk and pathogenesis by the gut microbiota: Complex interactions between host genetics, bacterial metabolism, and diet.},
author = {Montgomery TL, Peipert D, Krementsov DN.},
journal = {Immunol Rev},
year = {2024},
doi = {10.1111/imr.13343},
pmid = {38717158}
}
@article{lin283595,
title = {Gut microbial beta-glucuronidases influence endobiotic homeostasis and are modulated by diverse therapeutics.},
author = {Simpson JB, Walker ME, Sekela JJ, Ivey SM, Jariwala PB, Storch CM, Kowalewski ME, Graboski AL, Lietzan AD, Walton WG, Davis KA, Cloer EW, Borlandelli V, Hsiao YC, Roberts LR, Perlman DH, Liang X, Overkleeft HS, Bhatt AP, Lu K, Redinbo MR.},
journal = {Cell Host Microbe},
year = {2024},
doi = {10.1016/j.chom.2024.04.018},
pmid = {38754417}
}
@article{lin283479,
title = {Gut Microbiota Profile Changes in Patients with Inflammatory Bowel Disease and Non-Alcoholic Fatty Liver Disease: A Metagenomic Study.},
author = {De Caro C, Spagnuolo R, Quirino A, Mazza E, Carrabetta F, Maurotti S, Cosco C, Bennardo F, Roberti R, Russo E, Giudice A, Giudice A, Pujia A, Doldo P, Matera G, Marascio N.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25105453},
pmid = {38791490}
}
@article{lin283604,
title = {Gut microbiome remodeling and metabolomic profile improves in response to protein pacing with intermittent fasting versus continuous caloric restriction.},
author = {Mohr AE, Sweazea KL, Bowes DA, Jasbi P, Whisner CM, Sears DD, Krajmalnik-Brown R, Jin Y, Gu H, Klein-Seetharaman J, Arciero KM, Gumpricht E, Arciero PJ.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-48355-5},
pmid = {38806467}
}
@article{lin283374,
title = {Intestinal microecological transplantation for a patient with chronic radiation enteritis: A case report.},
author = {Wang L, Li Y, Zhang YJ, Peng LH.},
journal = {World J Gastroenterol},
year = {2024},
doi = {10.3748/wjg.v30.i19.2603},
pmid = {38817661}
}
@article{lin283523,
title = {Guild-level signature of gut microbiome for diabetic kidney disease.},
author = {Tang S, Wu G, Liu Y, Xue B, Zhang S, Zhang W, Jia Y, Xie Q, Liang C, Wang L, Heng H, Wei W, Shi X, Hu Y, Yang J, Zhao L, Wang X, Zhao L, Yuan H.},
journal = {mBio},
year = {2024},
doi = {10.1128/mbio.00735-24},
pmid = {38819146}
}
@article{lin283480,
title = {Inflammatory bowel disease associated with primary sclerosing cholangitis is associated with an altered gut microbiome and bile acid profile.},
author = {Leibovitzh H, Nayeri S, Borowski K, Hernandez-Rocha C, Lee SH, Turpin W, Stempak JM, Sandhu I, Milgrom R, Smith MI, Croitoru K, Hirschfield GM, Gulamhusein A, Silverberg MS.},
journal = {J Crohns Colitis},
year = {2024},
doi = {10.1093/ecco-jcc/jjae096},
pmid = {38980940}
}
@article{lin283458,
title = {Insights from metagenomics into gut microbiome associated with acute coronary syndrome therapy.},
author = {Guan Y, Zhao S, Li J, Zhang W, Guo Z, Luo Y, Jiang X, Li J, Liu J, Chen X, Zhao Z, Zhang Z.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1369478},
pmid = {39035441}
}
@article{lin283384,
title = {Fecal Microbiota Characteristics in Constipation-Predominant and Mixed-Type Irritable Bowel Syndrome.},
author = {Gryaznova M, Smirnova Y, Burakova I, Morozova P, Lagutina S, Chizhkov P, Korneeva O, Syromyatnikov M.},
journal = {Microorganisms},
year = {2024},
doi = {10.3390/microorganisms12071414},
pmid = {39065182}
}
@article{lin283554,
title = {MS-20 enhances the gut microbiota-associated antitumor effects of anti-PD1 antibody.},
author = {Lee PJ, Hung CM, Yang AJ, Hou CY, Chou HW, Chang YC, Chu WC, Huang WY, Kuo WC, Yang CC, Lin KI, Hung KH, Chang LC, Lee KY, Kuo HP, Lu KM, Lai HC, Kuo ML, Chen WJ.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2380061},
pmid = {39078050}
}
@article{lin283529,
title = {Gut microbiota: a potential influencer of insomnia occurring after COVID-19 infection.},
author = {Fang J, Wang S, Liu L, Zhang X, Liu R, Pang X, Cui J, Han J, Zhu X.},
journal = {Front Psychiatry},
year = {2024},
doi = {10.3389/fpsyt.2024.1423715},
pmid = {39109368}
}
@article{lin283466,
title = {Causal association of juvenile idiopathic arthritis or JIA-associated uveitis and gut microbiota: a bidirectional two-sample Mendelian randomisation study.},
author = {Hong JB, Chen YX, Su ZY, Chen XY, Lai YN, Yang JH.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1356414},
pmid = {39114654}
}
@article{lin283405,
title = {Phylogenetic diversity of putative nickel-containing carbon monoxide dehydrogenase-encoding prokaryotes in the human gut microbiome.},
author = {Katayama YA, Kamikawa R, Yoshida T.},
journal = {Microb Genom},
year = {2024},
doi = {10.1099/mgen.0.001285},
pmid = {39166974}
}
@article{lin283370,
title = {Investigating the link between gut microbiome and bone mineral density: The role of genetic factors.},
author = {Gao N, Zhuang Y, Zheng Y, Li Y, Wang Y, Zhu S, Fan M, Tian W, Jiang Y, Wang Y, Cui M, Suo C, Zhang T, Jin L, Chen X, Xu K.},
journal = {Bone},
year = {2024},
doi = {10.1016/j.bone.2024.117239},
pmid = {39179139}
}
@article{lin283531,
title = {Consistent signatures in the human gut microbiome of longevous populations.},
author = {Chen S, Zhang Z, Liu S, Chen T, Lu Z, Zhao W, Mou X, Liu S.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2393756},
pmid = {39197040}
}
@article{lin283453,
title = {Baseline Gut Microbiota Was Associated with Long-Term Immune Response at One Year Following Three Doses of BNT162b2.},
author = {Zhang LN, Tan JT, Ng HY, Liao YS, Zhang RQ, Chan KH, Hung IF, Lam TT, Cheung KS.},
journal = {Vaccines (Basel)},
year = {2024},
doi = {10.3390/vaccines12080916},
pmid = {39204040}
}
@article{lin283431,
title = {Rational Design of Live Biotherapeutic Products for the Prevention of Clostridioides difficile Infection.},
author = {Ke S, Villafuerte Galvez JA, Sun Z, Cao Y, Pollock NR, Chen X, Kelly CP, Liu YY.},
journal = {J Infect Dis},
year = {2025},
doi = {10.1093/infdis/jiae470},
pmid = {39316685}
}
@article{lin283462,
title = {SARS-CoV-2 infection is associated with intestinal permeability, systemic inflammation, and microbial dysbiosis in hospitalized patients.},
author = {Basting CM, Langat R, Broedlow CA, Guerrero CR, Bold TD, Bailey M, Velez A, Schroeder T, Short-Miller J, Cromarty R, Mayer ZJ, Southern PJ, Schacker TW, Safo SE, Bramante CT, Tignanelli CJ, Schifanella L, Klatt NR.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.00680-24},
pmid = {39345212}
}
@article{lin283573,
title = {Noninvasive, microbiome-based diagnosis of inflammatory bowel disease.},
author = {Zheng J, Sun Q, Zhang M, Liu C, Su Q, Zhang L, Xu Z, Lu W, Ching J, Tang W, Cheung CP, Hamilton AL, Wilson O'Brien AL, Wei SC, Bernstein CN, Rubin DT, Chang EB, Morrison M, Kamm MA, Chan FKL, Zhang J, Ng SC.},
journal = {Nat Med},
year = {2024},
doi = {10.1038/s41591-024-03280-4},
pmid = {39367251}
}
@article{lin283441,
title = {Immunoglobulin secretion influences the composition of chicken caecal microbiota.},
author = {Volf J, Kaspers B, Schusser B, Crhanova M, Karasova D, Stepanova H, Babak V, Rychlik I.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-76856-2},
pmid = {39455845}
}
@article{lin283435,
title = {Human Herpesvirus-6B Infection and Alterations of Gut Microbiome in Patients with Fibromyalgia: A Pilot Study.},
author = {Ievina L, Fomins N, Gudra D, Kenina V, Vilmane A, Gravelsina S, Rasa-Dzelzkaleja S, Murovska M, Fridmanis D, Nora-Krukle Z.},
journal = {Biomolecules},
year = {2024},
doi = {10.3390/biom14101291},
pmid = {39456224}
}
@article{lin283460,
title = {Does gut microbiota dysbiosis impact the metabolic alterations of hydrogen sulfide and lanthionine in patients with chronic kidney disease?},
author = {Garcia-Martinez Y, Alexandrova E, Iebba V, Ferravante C, Spinelli M, Franci G, Amoresano A, Weisz A, Trepiccione F, Borriello M, Ingrosso D, Perna AF.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03590-0},
pmid = {39462312}
}
@article{lin283530,
title = {Exercise-changed gut mycobiome as a potential contributor to metabolic benefits in diabetes prevention: an integrative multi-omics study.},
author = {Wang Y, Chen J, Ni Y, Liu Y, Gao X, Tse MA, Panagiotou G, Xu A.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2416928},
pmid = {39473051}
}
@article{lin283443,
title = {Variation in the metagenomic analysis of fecal microbiome composition calls for a standardized operating approach.},
author = {Xu Z, Yeoh YK, Tun HM, Fei N, Zhang J, Morrison M, Kamm MA, Yu J, Chan FKL, Ng SC.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.01516-24},
pmid = {39475247}
}
@article{lin283449,
title = {Fecal Microbiome Composition Correlates with Pathologic Complete Response in Patients with Operable Esophageal Cancer Treated with Combined Chemoradiotherapy and Immunotherapy.},
author = {Shaikh FY, Lee S, White JR, Zhao Y, Ferri JT, Pereira G, Landon BV, Ke S, Hu C, Feliciano JL, Hales RK, Voong KR, Battafarano RJ, Yang SC, Broderick S, Ha J, Thompson E, Shin EJ, Bartlett DL, Weksler B, Pardoll DM, Anagnostou V, Lam VK, Zaidi AH, Kelly RJ, Sears CL.},
journal = {Cancers (Basel)},
year = {2024},
doi = {10.3390/cancers16213644},
pmid = {39518082}
}
@article{lin283543,
title = {Gut microbial metabolism of bile acids modifies the effect of Mediterranean diet interventions on cardiometabolic risk in a randomized controlled trial.},
author = {Gao P, Rinott E, Dong D, Mei Z, Wang F, Liu Y, Kamer O, Yaskolka Meir A, Tuohy KM, Bluher M, Stumvoll M, Stampfer MJ, Shai I, Wang DD.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2426610},
pmid = {39535126}
}
@article{lin283422,
title = {Pilots, Astronauts, and the Aerospace Microbiota: A Narrative Review of Occupational Impact.},
author = {Minoretti P, Fontana JM, Yilmaz Y.},
journal = {Cureus},
year = {2024},
doi = {10.7759/cureus.72268},
pmid = {39583430}
}
@article{lin283419,
title = {Exploring the interaction between the gut microbiota and cyclic adenosine monophosphate-protein kinase A signaling pathway: a potential therapeutic approach for neurodegenerative diseases.},
author = {Deng F, Yang D, Qing L, Chen Y, Zou J, Jia M, Wang Q, Jiang R, Huang L.},
journal = {Neural Regen Res},
year = {2025},
doi = {10.4103/nrr.nrr-d-24-00607},
pmid = {39589173}
}
@article{lin283521,
title = {Multi-biome analysis identifies distinct gut microbial signatures and their crosstalk in ulcerative colitis and Crohn's disease.},
author = {Akiyama S, Nishijima S, Kojima Y, Kimura M, Ohsugi M, Ueki K, Mizokami M, Hattori M, Tsuchiya K, Uemura N, Kawai T, Bork P, Nagata N.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-54797-8},
pmid = {39604394}
}
@article{lin283451,
title = {Omic characterizing and targeting gut dysbiosis in children with autism spectrum disorder: symptom alleviation through combined probiotic and medium-carbohydrate diet intervention - a pilot study.},
author = {Li Y, Hu W, Lin B, Ma T, Zhang Z, Hu W, Zhou R, Kwok LY, Sun Z, Zhu C, Zhang H.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2434675},
pmid = {39632378}
}
@article{lin283507,
title = {Open Label Vancomycin in Primary Sclerosing Cholangitis-Inflammatory Bowel Disease: Improved Colonic Disease Activity and Associations With Changes in Host-Microbiome-Metabolomic Signatures.},
author = {Quraishi MN, Cheesbrough J, Rimmer P, Mullish BH, Sharma N, Efstathiou E, Acharjee A, Gkoutus G, Patel A, Marchesi JR, Camuzeaux S, Chappell K, Valdivia-Garcia MA, Ferguson J, Brookes MJ, Walmsley M, Rossiter AE, van Schaik W, McInnes RS, Cooney R, Trauner M, Beggs AD, Iqbal TH, Trivedi PJ.},
journal = {J Crohns Colitis},
year = {2025},
doi = {10.1093/ecco-jcc/jjae189},
pmid = {39673746}
}
@article{lin283456,
title = {Clinical Efficacy of Probiotics for Allergic Rhinitis: Results of an Exploratory Randomized Controlled Trial.},
author = {Lungaro L, Malfa P, Manza F, Costanzini A, Valentini G, Squarzanti DF, Viciani E, Velichevskaya A, Castagnetti A, Barbalinardo M, Gentili D, Cariani A, Ghisellini S, Caputo F, De Giorgio R, Caio G.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16234173},
pmid = {39683566}
}
@article{lin283514,
title = {Response of the gut microbiome and metabolome to dietary fiber in healthy dogs.},
author = {Bhosle A, Jackson MI, Walsh AM, Franzosa EA, Badri DV, Huttenhower C.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00452-24},
pmid = {39714168}
}
@article{lin283406,
title = {Associations of gut microbiota with disease development, disease activity, and therapeutic effects in patients with systemic lupus erythematosus.},
author = {Nishio J, Sato H, Watanabe E, Masuoka H, Aoki K, Kawazoe M, Wakiya R, Yamada S, Muraoka S, Masuoka S, Hayashi T, Mizutani S, Yamada Z, Koshiba K, Irita I, Kanaji M, Furukawa K, Yajima N, Dobashi H, Hirose W, Ishii Y, Suda W, Nanki T.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-83835-0},
pmid = {39738678}
}
@article{lin283413,
title = {Gut microbial 'TNFalpha-sphingolipids-steroid hormones' axis in children with autism spectrum disorder: an insight from meta-omics analysis.},
author = {Shao L, Cai G, Fu J, Zhang W, Ye Y, Ling Z, Ye S.},
journal = {J Transl Med},
year = {2024},
doi = {10.1186/s12967-024-05973-3},
pmid = {39741321}
}
@article{lin283412,
title = {Gut microbiome and clinical and lifestyle host factors associated with recurrent positive RT-PCR for SARS-CoV-2.},
author = {Jimenez-Arroyo C, Molinero N, Sabater C, Margolles A, Terron-Camero LC, Andres-Leon E, Ramos M, Del Val M, Moreno-Arribas MV.},
journal = {Front Cell Infect Microbiol},
year = {2024},
doi = {10.3389/fcimb.2024.1494193},
pmid = {39744158}
}
@article{lin283420,
title = {Changes in the intestinal microbiota of broiler chicken induced by dietary supplementation of the diatomite-bentonite mixture.},
author = {Wesierska E, Micek P, Adamski MG, Gondek K, Lis M, Trela M, Wojtysiak D, Kowal J, Wyrobisz-Papiewska A, Kunstman G, Mosiolek S, Smoron K.},
journal = {BMC Vet Res},
year = {2025},
doi = {10.1186/s12917-024-04439-4},
pmid = {39799366}
}
@article{lin283437,
title = {Lupus and inflammatory bowel disease share a common set of microbiome features distinct from other autoimmune disorders.},
author = {Zhou H, Balint D, Shi Q, Vartanian T, Kriegel MA, Brito I.},
journal = {Ann Rheum Dis},
year = {2025},
doi = {10.1136/ard-2024-225829},
pmid = {39874239}
}
@article{lin283506,
title = {SAMPL-seq reveals micron-scale spatial hubs in the human gut microbiome.},
author = {Richardson M, Zhao S, Lin L, Sheth RU, Qu Y, Lee J, Moody T, Ricaurte D, Huang Y, Velez-Cortes F, Urtecho G, Wang HH.},
journal = {Nat Microbiol},
year = {2025},
doi = {10.1038/s41564-024-01914-4},
pmid = {39901058}
}
@article{lin283518,
title = {Gut Microbiota-Butyrate-PPARgamma Axis Modulates Adipose Regulatory T Cell Population.},
author = {Chen B, Guan L, Wu C, Gong Y, Wu L, Zhang M, Cao Z, Chen Y, Yang C, Wang B, Li Y, Li B, Bi Y, Ning G, Wang J, Wang W, Liu R.},
journal = {Adv Sci (Weinh)},
year = {2025},
doi = {10.1002/advs.202411086},
pmid = {39998325}
}
@article{lin283440,
title = {Perioperative Multi-Kingdom Gut Microbiota Alters in Coronary Artery Bypass Grafting.},
author = {Fu Z, Jia Y, Zhao J, Guo Y, Xie B, An K, Yuan W, Chen Y, Zhong J, Tong Z, Liu X, Su P.},
journal = {Biomedicines},
year = {2025},
doi = {10.3390/biomedicines13020475},
pmid = {40002888}
}
@article{lin283404,
title = {Gut microbiota is associated with persistence of longer-term BNT162b2 vaccine immunogenicity.},
author = {Ng HY, Liao Y, Cheung CL, Zhang R, Chan KH, Seto WK, Leung WK, Hung IFN, Lam TTY, Cheung KS.},
journal = {Front Immunol},
year = {2025},
doi = {10.3389/fimmu.2025.1534787},
pmid = {40083550}
}
@article{lin283484,
title = {Almond snacking modulates gut microbiome and metabolome in association with improved cardiometabolic and inflammatory markers.},
author = {Park G, Johnson K, Miller K, Kadyan S, Singar S, Patoine C, Hao F, Lee Y, Patterson AD, Arjmandi B, Kris-Etherton PM, Berryman CE, Nagpal R.},
journal = {NPJ Sci Food},
year = {2025},
doi = {10.1038/s41538-025-00403-0},
pmid = {40113782}
}
@article{lin283385,
title = {Improvement of the inflammation-damaged intestinal barrier and modulation of the gut microbiota in ulcerative colitis after FMT in the SHIME® model.},
author = {Kamlarova A, Kvakova M, Ambro L, Link R, Bertkova I, Hertelyova Z, Janicko M, Hijova E, Stofilova J.},
journal = {BMC Complement Med Ther},
year = {2025},
doi = {10.1186/s12906-025-04889-9},
pmid = {40259351}
}
@article{lin283428,
title = {Temporal network analysis of gut microbiota unveils aging trajectories associated with colon cancer.},
author = {Chen Z, Zhang Z, Nie BN, Huang W, Zhu Y, Zhang L, Xu M, Wang M, Yuan C, Liu N, Wang X, Tian J, Ba Q, Wang Z.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.01188-24},
pmid = {40298386}
}
@article{lin283427,
title = {Consumption of only wild foods induces large scale, partially persistent alterations to the gut microbiome.},
author = {Rampelli S, Pomstra D, Barone M, Fabbrini M, Turroni S, Candela M, Henry AG.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-00319-5},
pmid = {40360545}
}
@article{lin283411,
title = {Interventions targeting the gut microbiota and their possible effect on gastrointestinal and neurobehavioral symptoms in autism spectrum disorder.},
author = {Takyi E, Nirmalkar K, Adams J, Krajmalnik-Brown R.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2499580},
pmid = {40376856}
}
@article{lin283377,
title = {Deciphering oxidative stress responses in human gut microbes and fecal microbiota: a cultivation-based approach.},
author = {Zund JN, Caflisch M, Mujezinovic D, Pluss S, Lacroix C, Pugin B.},
journal = {FEMS Microbiol Ecol},
year = {2025},
doi = {10.1093/femsec/fiaf054},
pmid = {40392681}
}
@article{lin283392,
title = {The alleviating effects and mechanisms of Enterococcus faecium Kimate-X and Lactobacillus plantarum Kimate-F combination on canine inflammatory bowel disease.},
author = {Zhang R, Hu W, Zhong S, Chen W, Xie S, Chen M, Yu Q.},
journal = {Front Vet Sci},
year = {2025},
doi = {10.3389/fvets.2025.1534665},
pmid = {40395807}
}
@article{lin283409,
title = {Characterization of blood microbial population in beef calves with clinical signs of sepsis using 16S rRNA gene sequencing.},
author = {Borriello G, Valentini F, Ferrini S, Di Muro G, Cagnotti G, Grego E, Catania AM, Stella MC, Ala U, Nebbia P, D'Angelo A, Bellino C.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0324469},
pmid = {40408396}
}
@article{lin283379,
title = {Microbial metabolism mediates the deteriorative effects of sedentary behaviour on insulin resistance.},
author = {Ju J, He J, Ye B, Li S, Zhao J, Chen W, Zhang Q, Zhao W, Yang J, Liu L, Li Y, Xia M, Liu Y.},
journal = {Clin Transl Med},
year = {2025},
doi = {10.1002/ctm2.70348},
pmid = {40413611}
}
@article{lin283425,
title = {Prolonged effect of antibiotic therapy on the gut microbiota composition, functionality, and antibiotic resistance genes' profiles in healthy stool donors.},
author = {Karimianghadim R, Satokari R, Yeo S, Arkkila P, Kao D, Pakpour S.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1589704},
pmid = {40415928}
}
@article{lin283486,
title = {Microbiome signatures of virulence in the oral-gut-brain axis influence Parkinson's disease and cognitive decline pathophysiology.},
author = {Clasen F, Yildirim S, Arikan M, Garcia-Guevara F, Hanoglu L, Yilmaz NH, Sen A, Celik HK, Neslihan AA, Demir TK, Temel Z, Mardinoglu A, Moyes DL, Uhlen M, Shoaie S.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2506843},
pmid = {40420833}
}
@article{lin283393,
title = {The characteristics of tissue microbiota in different anatomical locations and different tissue types of the colorectum in patients with colorectal cancer.},
author = {Liu L, Shi J, Wang H, Du H, Yang J, Wei K, Zhou Z, Li M, Huang S, Zhan L, Li G, Lv Y, Shen H, Cai W.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00198-25},
pmid = {40422085}
}
@article{lin283375,
title = {Compositional and functional gut microbiota alterations in mild cognitive impairment: links to Alzheimer's disease pathology.},
author = {Fan KC, Lin CC, Chiu YL, Koh SH, Liu YC, Chuang YF.},
journal = {Alzheimers Res Ther},
year = {2025},
doi = {10.1186/s13195-025-01769-9},
pmid = {40448221}
}
@article{lin283399,
title = {Microbiome gut community structure and functionality are associated with symptom severity in non-responsive celiac disease patients undergoing a gluten-free diet.},
author = {Marcos-Zambrano LJ, Lacruz-Pleguezuelos B, Aguilar-Aguilar E, Marcos-Pasero H, Valdes A, Loria-Kohen V, Cifuentes A, Ramirez de Molina A, Diaz-Ruiz A, Pancaldi V, Carrillo de Santa Pau E.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.00143-25},
pmid = {40476734}
}
@article{lin283389,
title = {Fecal microbiome analysis in patients with metabolic syndrome and type 2 diabetes.},
author = {Sinisterra Loaiza LI, Fernandez-Edreira D, Linares-Blanco J, Cepeda A, Cardelle-Cobas A, Fernandez-Lozano C.},
journal = {PeerJ},
year = {2025},
doi = {10.7717/peerj.19108},
pmid = {40520642}
}
@article{lin283410,
title = {Gut Mucosal Microbiome of Patients With Low-Grade Adenomatous Bowel Polyps.},
author = {Welham Z, Li J, Tse B, Engel A, Molloy MP.},
journal = {Gastro Hep Adv},
year = {2025},
doi = {10.1016/j.gastha.2025.100687},
pmid = {40530238}
}
@article{lin283418,
title = {Genomic characterization of antimicrobial resistance and mobile genetic elements in swine gut bacteria isolated from a Canadian research farm.},
author = {Rahman N, McCullough T, Orozco DF, Walkowiak S, Farzan A, Shekarriz S, Surette MG, Cicek N, Derakhshani H.},
journal = {Anim Microbiome},
year = {2025},
doi = {10.1186/s42523-025-00432-w},
pmid = {40533851}
}
@article{lin283408,
title = {Plasma TMAO Concentrations and Gut Microbiota Composition in Subjects with and Without Metabolic Syndrome: Results from Pilot Study.},
author = {Hefni ME, Witthoft CM, Hellstrom P, Johansson I, Esberg A.},
journal = {Metabolites},
year = {2025},
doi = {10.3390/metabo15060364},
pmid = {40559388}
}
@article{lin283515,
title = {Multi-omic analysis reveals transkingdom gut dysbiosis in metabolic dysfunction-associated steatotic liver disease.},
author = {Kim H, Nelson P, Nzabarushimana E, Shen J, Jensen J, Bhosle A, Li C, Lee N, Everett C, Berdy B, Frongillo G, Livny J, Hu FB, Simon TG, McIver L, Franzosa EA, Chan AT, Hayete B, Thompson KN, Huttenhower C, Nguyen LH.},
journal = {Nat Metab},
year = {2025},
doi = {10.1038/s42255-025-01318-6},
pmid = {40604156}
}
@article{lin283434,
title = {A comparative pharmacological study of three Chinese traditional medicines found Blautia to be the key functional bacterium of Coptis chinensis Franch. and Phellodendri chinensis Cortex against colitis.},
author = {Zhan J, Cheng J, Yang Y, Xu X, Lu Z, Li L, Li H, Yang Q, Hu Y, Song Y, Fan Q, Yang E, Liang Q, Sun S, Qiu F, Cao Y, Wu C.},
journal = {Front Pharmacol},
year = {2025},
doi = {10.3389/fphar.2025.1587119},
pmid = {40606617}
}
@article{lin283382,
title = {GenomeFISH: genome-based fluorescence in situ hybridization for strain-level visualization of microbial communities.},
author = {Engelberts JP, Ye J, Parks DH, McMaster ES, McInnes AS, Woodcroft BJ, Volmer JG, McIlroy SJ, Tyson GW.},
journal = {ISME J},
year = {2025},
doi = {10.1093/ismejo/wraf138},
pmid = {40621946}
}
@article{lin283396,
title = {Intestinal microbiota in adults with cholangiocarcinoma identifies the dysregulated Blautia species and bile acid metabolic pathways.},
author = {De T, Ma T, Wang W, An X, Liu D, Yin H, Wang Q, Zhao T, Wang H.},
journal = {BMC Gastroenterol},
year = {2025},
doi = {10.1186/s12876-025-04096-3},
pmid = {40624612}
}
@article{lin283473,
title = {Identification of a 10-species microbial signature of inflammatory bowel disease by machine learning and external validation.},
author = {Yu S, Li J, Ye Z, Zhang M, Guo X, Wang X, Liu L, Wang Y, Zhou X, Fu W, Zhang MQ, Chen YG.},
journal = {Cell Regen},
year = {2025},
doi = {10.1186/s13619-025-00246-w},
pmid = {40658318}
}
@article{lin283450,
title = {Structure analysis of human gut microbiota associated with single-celled gut protists using Next-Generation Sequencing of 16S and 18S rRNA genes.},
author = {Belkessa S, Pasolli E, Medrouh B, Berg RPKD, Andersen LO', Nielsen HV, Stensvold CR.},
journal = {Comput Struct Biotechnol J},
year = {2025},
doi = {10.1016/j.csbj.2025.06.006},
pmid = {40688000}
}
@article{lin283367,
title = {Multiomics insights into functional constipation: Exploring microbiome, metabolome, and lipidome independent of transit time.},
author = {Ryu JE, Shin SY, Ahn JS, Moon JM, Joo HJ, Seo J, Kim JS, Lee YB, Jeong Y, Cho JY, Park S, Kwok SK, Chung HJ, Choi CH, Choi HK.},
journal = {Dig Liver Dis},
year = {2025},
doi = {10.1016/j.dld.2025.07.011},
pmid = {40713395}
}
@article{lin283446,
title = {Characterizing Gene-Level Adaptations in the Gut Microbiome During Viral Infections: The Role of a Fucoidan-Rich Extract.},
author = {Garcia G, Soto J, Valenzuela C, Cano RJ.},
journal = {Genes (Basel)},
year = {2025},
doi = {10.3390/genes16070740},
pmid = {40725397}
}
@article{lin283368,
title = {Metagenomic Characterization of Gut Microbiota in Individuals with Low Cardiovascular Risk.},
author = {Issilbayeva A, Kozhakhmetov S, Jarmukhanov Z, Vinogradova E, Mukhanbetzhanov N, Meiramova A, Rib Y, Ivanova-Razumova T, Myrzakhmetova G, Andossova S, Zeinoldina A, Kuantkhan M, Ainabekova B, Bekbossynova M, Kushugulova A.},
journal = {J Clin Med},
year = {2025},
doi = {10.3390/jcm14145097},
pmid = {40725792}
}
@article{lin283364,
title = {Quantifying the varying harvest of fermentation products from the human gut microbiota.},
author = {Arnoldini M, Sharma R, Moresi C, Chure G, Chabbey J, Slack E, Cremer J.},
journal = {Cell},
year = {2025},
doi = {10.1016/j.cell.2025.07.005},
pmid = {40744013}
}
@article{lin283372,
title = {Reduced butyrate-producing bacteria and altered metabolic pathways in the gut microbiome of immunoglobulin A nephropathy patients.},
author = {Popova A, Racenis K, Briviba M, Saksis R, Saulite M, Slisere B, Berga-Svitina E, Oleinika K, Saulite AJ, Seilis J, Kroica J, Cernevskis H, Petersons A, Klovins J, Lejnieks A, Kuzema V.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-13629-5},
pmid = {40745465}
}
@article{lin283417,
title = {The adoption of a westernized gut microbiome in Indian Immigrants and Indo-Canadians is associated with dietary acculturation.},
author = {D'Aloisio LD, Ballal M, Ghosh S, Haskey N, Abulizi N, Karimianghadim R, Liu C, Sruthi P, Nagarajan L, Vasudevan S, Shetty V, Purandare M, Bhaumik U, Howlader DR, Pakpour S, Barnett J, Gibson DL.},
journal = {NPJ Biofilms Microbiomes},
year = {2025},
doi = {10.1038/s41522-025-00778-8},
pmid = {40753175}
}
@article{lin283401,
title = {Related differences in fecal bacteria of Chinese northern pregnant women of different ages: associations with maternal clinical indicators and neonatal outcomes.},
author = {Hu F, Liu G, Sun X, Su Y, Huang M.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1642516},
pmid = {40756211}
}
@article{lin283445,
title = {CRISPR-based genetic tools for the study of host-microbe interactions.},
author = {Echavarria Galindo M, Lai Y.},
journal = {Infect Immun},
year = {2025},
doi = {10.1128/iai.00510-24},
pmid = {40757822}
}
@article{lin283369,
title = {Metagenome-informed metaproteomics methodology: a new breakthrough in revealing the mechanisms of host-microbiota-diet interactions in inflammatory bowel disease.},
author = {Zhang S, Xu Q.},
journal = {Front Cell Dev Biol},
year = {2025},
doi = {10.3389/fcell.2025.1634974},
pmid = {40761745}
}
@article{lin283465,
title = {Beyond the gut: decoding the gut-immune-brain axis in health and disease.},
author = {Park JC, Chang L, Kwon HK, Im SH.},
journal = {Cell Mol Immunol},
year = {2025},
doi = {10.1038/s41423-025-01333-3},
pmid = {40804450}
}
@article{lin283402,
title = {Temporal response patterns of human gut microbiota to dietary fiber.},
author = {Lin X, Wang C, Liu B, Zhu Y, Zhai R, Zhang C.},
journal = {Imeta},
year = {2025},
doi = {10.1002/imt2.70046},
pmid = {40860439}
}
@article{lin283391,
title = {Galacto-Oligosaccharides Exert Bifidogenic Effects at Capsule-Compatible Ultra-Low Doses.},
author = {Harthoorn LF, Heyse J, Baudot A, van Hengel IAJ, Van den Abbeele P.},
journal = {Metabolites},
year = {2025},
doi = {10.3390/metabo15080530},
pmid = {40863149}
}
@article{lin283398,
title = {Integrated fecal macrogenomic and metabolomic analyses reveal celiac disease flora and metabolic profiles associated with Chinese populations.},
author = {Xue S, Shi T, Xie J, Liu W, Yao S, Li N, Liu H, Kong W, Gao F.},
journal = {J Transl Med},
year = {2025},
doi = {10.1186/s12967-025-06991-5},
pmid = {40890809}
}
@article{lin283371,
title = {A metagenome-wide association study of gut microbiota in hepatitis B virus-related cirrhosis in northwest China.},
author = {Feng M, Chai Y, Li J, Wang Q, Zhang D.},
journal = {Front Genet},
year = {2025},
doi = {10.3389/fgene.2025.1619911},
pmid = {40909440}
}
@article{lin283444,
title = {Gut microbiome signatures in iNPH: Insights from a shotgun metagenomics study.},
author = {Park R, Chevalier C, Kieser S, Marizzoni M, Paquis A, Armand S, Scheffler M, Allali G, Assal F, Momjian S, Frisoni GB.},
journal = {PLoS One},
year = {2025},
doi = {10.1371/journal.pone.0330251},
pmid = {40953029}
}
@article{lin283459,
title = {Benefits, side effects, and uses of Hericium erinaceus as a supplement: a systematic review.},
author = {Menon A, Jalal A, Arshad Z, Nawaz FA, Kashyap R.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1641246},
pmid = {40959699}
}
@article{lin283421,
title = {Combined metagenomic and metabolomic analyses reveal gut microbiota dysbiosis and metabolic dysfunction in pediatric neurodevelopmental disorders.},
author = {Wang Q, Luo Y, Mao C, Xiang X, Chen J.},
journal = {Front Immunol},
year = {2025},
doi = {10.3389/fimmu.2025.1645137},
pmid = {40963595}
}
@article{lin283429,
title = {Associations between sleep and the gut microbiome in adults with colorectal cancer and their caregivers.},
author = {Barb JJ, Lee LJ, Ahmed A, Son EH, Nanda S, Yang L, Ban Y, Ting A, Tsai TC, Kim Y.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-18402-2},
pmid = {40983606}
}
@article{lin283397,
title = {Integrating Machine Learning to Identify Key Microbiota of Gut Community Changes Across Different Stages in Dahe Black Pigs.},
author = {Yi L, Cheng W, Song G, Jia H, Xie Y, Zhang W, Zhu J, Zhao S.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13092038},
pmid = {41011369}
}
@article{lin283383,
title = {Gut dysbiosis patterns in CVID patients with noninfectious complications observed in a germ-free mouse model through fecal microbiota transplantation.},
author = {Hajjar J, Voigt AY, Conner ME, Swennes AG, Fowler S, Calarge C, Mendonca DD, Armstrong D, Chang CY, Walter JE, Butte MJ, Savidge T, Oh J, Kheradmand F, Petrosino JF.},
journal = {J Hum Immun},
year = {2025},
doi = {10.70962/jhi.20250040},
pmid = {41019955}
}
@article{lin283416,
title = {Walnut kernel pellicle polyphenols: subcritical water extraction, digestive characteristics, and their effect on gut microbiota and metabolites.},
author = {Yuan X, Feng Q, Wang Q, Wang T, Qiao Z, Pan H, Zhong Y, Zhuang Y.},
journal = {Food Chem X},
year = {2025},
doi = {10.1016/j.fochx.2025.103020},
pmid = {41049094}
}
@article{lin283366,
title = {Hydroxytyrosol Improves Metabolic Dysfunction-Associated Fatty Liver Disease Dependent on the Modulation of Gut Microbiota.},
author = {Xiao Y, Zhang X, Shao B, Wu Z, Li X, Yi D, Li T, Yang T, Zhu J, Huang T, Deng Y, Qiu T, Yang G, Sun X, Wang N.},
journal = {J Agric Food Chem},
year = {2025},
doi = {10.1021/acs.jafc.5c07003},
pmid = {41114530}
}
@article{lin283376,
title = {Postoperative Gut Microbiota Changes after Colorectal Cancer Surgery: A Comparative Study Based on Resection Sites.},
author = {Hattori Y, Fujii T, Tochio T, Kumamoto T, Hiro J, Matsuoka H, Masumori K, Funasaka K, Ohno E, Hirooka Y, Suda K, Otsuka K.},
journal = {J Anus Rectum Colon},
year = {2025},
doi = {10.23922/jarc.2025-048},
pmid = {41180801}
}
@article{lin283365,
title = {Multiomic Analysis of the Gut Microbiome and Serum Metabolome in Response to a Low-Carbohydrate, High-Protein Diet in Individuals With Spinal Cord Injury.},
author = {Li J, Popovich PG, Kigerl KA, McTigue DM, Schwab J, Barnes S, Yarar-Fisher C.},
journal = {Top Spinal Cord Inj Rehabil},
year = {2025},
doi = {10.46292/sci24-00061},
pmid = {41268133}
}
@article{lin283471,
title = {Harnessing Metabolomics to Advance Nutrition-Based Therapeutics for Inflammation: A Systematic Review of Randomized Clinical Trials.},
author = {Carlino B, Guerrero-Flores GN, Niclis C, Segovia-Siapco G, Mayta ML.},
journal = {Metabolites},
year = {2025},
doi = {10.3390/metabo15110705},
pmid = {41295291}
}
@article{lin283381,
title = {Diversity and Functional Predictions of Gut Microbiota in Vietnamese Children Aged 6-24 Months with Persistent Diarrhea of Unknown Etiology.},
author = {Pham TTN, Dao TK, Nguyen TVH, Phung TBT, Nguyen HD, Nguyen TQ, Le TTH, Do TH.},
journal = {Pathogens},
year = {2025},
doi = {10.3390/pathogens14111136},
pmid = {41305373}
}