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title = {Development and testing of a DNA macroarray to assess nitrogenase (nifH) gene diversity.},
author = {Steward GF, Jenkins BD, Ward BB, Zehr JP.},
journal = {Appl Environ Microbiol},
year = {2004},
doi = {10.1128/aem.70.3.1455-1465.2004},
pmid = {15006766}
}
@article{lin98215,
title = {The bchU gene of Chlorobium tepidum encodes the c-20 methyltransferase in bacteriochlorophyll c biosynthesis.},
author = {Maresca JA, Gomez Maqueo Chew A, Ponsati MR, Frigaard NU, Ormerod JG, Bryant DA.},
journal = {J Bacteriol},
year = {2004},
doi = {10.1128/jb.186.9.2558-2566.2004},
pmid = {15090495}
}
@article{lin98083,
title = {Sepiapterin reductases from Chlorobium tepidum and Chlorobium limicola catalyze the synthesis of L-threo-tetrahydrobiopterin from 6-pyruvoyltetrahydropterin.},
author = {Choi YK, Jun SR, Cha EY, Park JS, Park YS.},
journal = {FEMS Microbiol Lett},
year = {2005},
doi = {10.1016/j.femsle.2004.10.044},
pmid = {15621425}
}
@article{lin98172,
title = {Evidence for autotrophic CO2 fixation via the reductive tricarboxylic acid cycle by members of the epsilon subdivision of proteobacteria.},
author = {Hugler M, Wirsen CO, Fuchs G, Taylor CD, Sievert SM.},
journal = {J Bacteriol},
year = {2005},
doi = {10.1128/jb.187.9.3020-3027.2005},
pmid = {15838028}
}
@article{lin98200,
title = {Second gene (nifH*) coding for a nitrogenase iron protein in Azotobacter chroococcum is adjacent to a gene coding for a ferredoxin-like protein.},
author = {Robson R, Woodley P, Jones R.},
journal = {EMBO J},
year = {1986},
doi = {10.1002/j.1460-2075.1986.tb04341.x},
pmid = {15966103}
}
@article{lin98020,
title = {An obligately photosynthetic bacterial anaerobe from a deep-sea hydrothermal vent.},
author = {Beatty JT, Overmann J, Lince MT, Manske AK, Lang AS, Blankenship RE, Van Dover CL, Martinson TA, Plumley FG.},
journal = {Proc Natl Acad Sci U S A},
year = {2005},
doi = {10.1073/pnas.0503674102},
pmid = {15967984}
}
@article{lin98049,
title = {Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations.},
author = {Zhang L, Hurek T, Reinhold-Hurek B.},
journal = {Nucleic Acids Res},
year = {2005},
doi = {10.1093/nar/gni156},
pmid = {16257977}
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@article{lin98180,
title = {Chlorobium limicola forma thiosulfatophilum: Biocatalyst in the Production of Sulfur and Organic Carbon from a Gas Stream Containing H(2)S and CO(2).},
author = {Cork DJ, Garunas R, Sajjad A.},
journal = {Appl Environ Microbiol},
year = {1983},
doi = {10.1128/aem.45.3.913-918.1983},
pmid = {16346255}
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@article{lin98192,
title = {Ecology and Physiology of the Competition for Light Between Chlorobium limicola and Chlorobium phaeobacteroides in Natural Habitats.},
author = {Montesinos E, Guerrero R, Abella C, Esteve I.},
journal = {Appl Environ Microbiol},
year = {1983},
doi = {10.1128/aem.46.5.1007-1016.1983},
pmid = {16346409}
}
@article{lin98171,
title = {Control of Oxidative Sulfur Metabolism of Chlorobium limicola forma thiosulfatophilum.},
author = {Cork D, Mathers J, Maka A, Srnak A.},
journal = {Appl Environ Microbiol},
year = {1985},
doi = {10.1128/aem.49.2.269-272.1985},
pmid = {16346713}
}
@article{lin98205,
title = {Evidence for autotrophy via the reverse tricarboxylic acid cycle in the marine magnetotactic coccus strain MC-1.},
author = {Williams TJ, Zhang CL, Scott JH, Bazylinski DA.},
journal = {Appl Environ Microbiol},
year = {2006},
doi = {10.1128/aem.72.2.1322-1329.2006},
pmid = {16461683}
}
@article{lin98214,
title = {Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota.},
author = {Hallam SJ, Mincer TJ, Schleper C, Preston CM, Roberts K, Richardson PM, DeLong EF.},
journal = {PLoS Biol},
year = {2006},
doi = {10.1371/journal.pbio.0040095},
pmid = {16533068}
}
@article{lin98086,
title = {[Factors controlling the biosynthesis of chlorosome antenna bacteriochlorophylls in green filamentous anoxygenic phototrophic bacteria of the family Oscillochloridaceae].},
author = {Taisova AS, Keppen OI, Novikov AA, Naumova AA, Fetisov ZG.},
journal = {Mikrobiologiia},
year = {2006},
doi = {10.1134/s0026261706020044},
pmid = {16758863}
}
@article{lin98079,
title = {Assembly of a mixture of isomeric BChl c from Chlorobium limicola as determined by intermolecular 13C-13C dipolar correlations: coexistence of dimer-based and pseudo-monomer-based stackings.},
author = {Kakitani Y, Nagae H, Mizoguchi T, Egawa A, Akiba K, Fujiwara T, Akutsu H, Koyama Y.},
journal = {Biochemistry},
year = {2006},
doi = {10.1021/bi0525728},
pmid = {16768453}
}
@article{lin98181,
title = {Biochemical and molecular characterization of a Na+-translocating F1Fo-ATPase from the thermoalkaliphilic bacterium Clostridium paradoxum.},
author = {Ferguson SA, Keis S, Cook GM.},
journal = {J Bacteriol},
year = {2006},
doi = {10.1128/jb.00128-06},
pmid = {16816177}
}
@article{lin98044,
title = {Genome sequence and global gene expression of Q54, a new phage species linking the 936 and c2 phage species of Lactococcus lactis.},
author = {Fortier LC, Bransi A, Moineau S.},
journal = {J Bacteriol},
year = {2006},
doi = {10.1128/jb.00581-06},
pmid = {16923877}
}
@article{lin98196,
title = {Both subunits of ATP-citrate lyase from Chlorobium tepidum contribute to catalytic activity.},
author = {Kim W, Tabita FR.},
journal = {J Bacteriol},
year = {2006},
doi = {10.1128/jb.00523-06},
pmid = {16952946}
}
@article{lin98189,
title = {Analysis of diversity and activity of sulfate-reducing bacterial communities in sulfidogenic bioreactors using 16S rRNA and dsrB genes as molecular markers.},
author = {Dar SA, Yao L, van Dongen U, Kuenen JG, Muyzer G.},
journal = {Appl Environ Microbiol},
year = {2007},
doi = {10.1128/aem.01875-06},
pmid = {17098925}
}
@article{lin98141,
title = {Structure of the light-harvesting bacteriochlorophyll c assembly in chlorosomes from Chlorobium limicola determined by solid-state NMR.},
author = {Egawa A, Fujiwara T, Mizoguchi T, Kakitani Y, Koyama Y, Akutsu H.},
journal = {Proc Natl Acad Sci U S A},
year = {2007},
doi = {10.1073/pnas.0605911104},
pmid = {17215361}
}
@article{lin98048,
title = {Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species.},
author = {Gupta RS, Lorenzini E.},
journal = {BMC Evol Biol},
year = {2007},
doi = {10.1186/1471-2148-7-71},
pmid = {17488508}
}
@article{lin98077,
title = {Isotopic replacement of pigments and a lipid in chlorosomes from Chlorobium limicola: characterization of the resultant chlorosomes.},
author = {Kakitani Y, Harada K, Mizoguchi T, Koyama Y.},
journal = {Biochemistry},
year = {2007},
doi = {10.1021/bi602586g},
pmid = {17497832}
}
@article{lin98030,
title = {Evolution of symbiotic bacteria in the distal human intestine.},
author = {Xu J, Mahowald MA, Ley RE, Lozupone CA, Hamady M, Martens EC, Henrissat B, Coutinho PM, Minx P, Latreille P, Cordum H, Van Brunt A, Kim K, Fulton RS, Fulton LA, Clifton SW, Wilson RK, Knight RD, Gordon JI.},
journal = {PLoS Biol},
year = {2007},
doi = {10.1371/journal.pbio.0050156},
pmid = {17579514}
}
@article{lin98202,
title = {Outer membrane proteins of Fibrobacter succinogenes with potential roles in adhesion to cellulose and in cellulose digestion.},
author = {Jun HS, Qi M, Gong J, Egbosimba EE, Forsberg CW.},
journal = {J Bacteriol},
year = {2007},
doi = {10.1128/jb.00560-07},
pmid = {17644604}
}
@article{lin98038,
title = {Evolution and functional characterization of the RH50 gene from the ammonia-oxidizing bacterium Nitrosomonas europaea.},
author = {Cherif-Zahar B, Durand A, Schmidt I, Hamdaoui N, Matic I, Merrick M, Matassi G.},
journal = {J Bacteriol},
year = {2007},
doi = {10.1128/jb.01089-07},
pmid = {17921289}
}
@article{lin98084,
title = {[Anoxygenic phototrophic bacterial community of Lake Shira (Khakassia)].},
author = {Lunina ON, Briantseva IA, Akimov VN, Rusanov II, Barinova ES, Lysenko AM, Rogozin DIu, Pimenov NV.},
journal = {Mikrobiologiia},
year = {2007},
doi = {10.1134/s0026261707040133},
pmid = {17974211}
}
@article{lin98186,
title = {A new pheromone trail-based genetic algorithm for comparative genome assembly.},
author = {Zhao F, Zhao F, Li T, Bryant DA.},
journal = {Nucleic Acids Res},
year = {2008},
doi = {10.1093/nar/gkn168},
pmid = {18445633}
}
@article{lin98082,
title = {Parallel electron donation pathways to cytochrome c(z) in the type I homodimeric photosynthetic reaction center complex of Chlorobium tepidum.},
author = {Tsukatani Y, Azai C, Kondo T, Itoh S, Oh-Oka H.},
journal = {Biochim Biophys Acta},
year = {2008},
doi = {10.1016/j.bbabio.2008.05.002},
pmid = {18534186}
}
@article{lin98204,
title = {Molecular characterization of the diversity and distribution of a thermal spring microbial community by using rRNA and metabolic genes.},
author = {Hall JR, Mitchell KR, Jackson-Weaver O, Kooser AS, Cron BR, Crossey LJ, Takacs-Vesbach CD.},
journal = {Appl Environ Microbiol},
year = {2008},
doi = {10.1128/aem.00233-08},
pmid = {18539788}
}
@article{lin98017,
title = {SoxAX binding protein, a novel component of the thiosulfate-oxidizing multienzyme system in the green sulfur bacterium Chlorobium tepidum.},
author = {Ogawa T, Furusawa T, Nomura R, Seo D, Hosoya-Matsuda N, Sakurai H, Inoue K.},
journal = {J Bacteriol},
year = {2008},
doi = {10.1128/jb.00634-08},
pmid = {18641134}
}
@article{lin98197,
title = {The genome of Rhodobacter sphaeroides strain 2.4.1 encodes functional cobinamide salvaging systems of archaeal and bacterial origins.},
author = {Gray MJ, Tavares NK, Escalante-Semerena JC.},
journal = {Mol Microbiol},
year = {2008},
doi = {10.1111/j.1365-2958.2008.06437.x},
pmid = {18808385}
}
@article{lin98012,
title = {Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes.},
author = {Loy A, Duller S, Baranyi C, Mussmann M, Ott J, Sharon I, Beja O, Le Paslier D, Dahl C, Wagner M.},
journal = {Environ Microbiol},
year = {2009},
doi = {10.1111/j.1462-2920.2008.01760.x},
pmid = {18826437}
}
@article{lin98212,
title = {Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications.},
author = {Valdes J, Pedroso I, Quatrini R, Dodson RJ, Tettelin H, Blake R, Eisen JA, Holmes DS.},
journal = {BMC Genomics},
year = {2008},
doi = {10.1186/1471-2164-9-597},
pmid = {19077236}
}
@article{lin98075,
title = {Stacking of bacteriochlorophyll c macrocycles in chlorosome from Chlorobium limicola as revealed by intermolecular 13C magnetic-dipole correlation, X-ray diffraction, and quadrupole coupling in 25Mg NMR.},
author = {Kakitani Y, Koyama Y, Shimoikeda Y, Nakai T, Utsumi H, Shimizu T, Nagae H.},
journal = {Biochemistry},
year = {2009},
doi = {10.1021/bi801651w},
pmid = {19123920}
}
@article{lin98046,
title = {Diversity of beta-propeller phytase genes in the intestinal contents of grass carp provides insight into the release of major phosphorus from phytate in nature.},
author = {Huang H, Shi P, Wang Y, Luo H, Shao N, Wang G, Yang P, Yao B.},
journal = {Appl Environ Microbiol},
year = {2009},
doi = {10.1128/aem.02188-08},
pmid = {19151187}
}
@article{lin98193,
title = {GeoChip-based analysis of metabolic diversity of microbial communities at the Juan de Fuca Ridge hydrothermal vent.},
author = {Wang F, Zhou H, Meng J, Peng X, Jiang L, Sun P, Zhang C, Van Nostrand JD, Deng Y, He Z, Wu L, Zhou J, Xiao X.},
journal = {Proc Natl Acad Sci U S A},
year = {2009},
doi = {10.1073/pnas.0810418106},
pmid = {19273854}
}
@article{lin98051,
title = {Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes.},
author = {Makarova KS, Wolf YI, Koonin EV.},
journal = {Biol Direct},
year = {2009},
doi = {10.1186/1745-6150-4-19},
pmid = {19493340}
}
@article{lin98188,
title = {Structure of chlorosomes from the green filamentous bacterium Chloroflexus aurantiacus.},
author = {Psencik J, Collins AM, Liljeroos L, Torkkeli M, Laurinmaki P, Ansink HM, Ikonen TP, Serimaa RE, Blankenship RE, Tuma R, Butcher SJ.},
journal = {J Bacteriol},
year = {2009},
doi = {10.1128/jb.00690-09},
pmid = {19717605}
}
@article{lin98070,
title = {Atomic structure of the bacteriochlorophyll c assembly in intact chlorosomes from Chlorobium limicola determined by solid-state NMR.},
author = {Akutsu H, Egawa A, Fujiwara T.},
journal = {Photosynth Res},
year = {2010},
doi = {10.1007/s11120-009-9523-2},
pmid = {20063063}
}
@article{lin98198,
title = {Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans.},
author = {Koechler S, Cleiss-Arnold J, Proux C, Sismeiro O, Dillies MA, Goulhen-Chollet F, Hommais F, Lievremont D, Arsene-Ploetze F, Coppee JY, Bertin PN.},
journal = {BMC Microbiol},
year = {2010},
doi = {10.1186/1471-2180-10-53},
pmid = {20167112}
}
@article{lin98071,
title = {[Metabolism of carbohydrates in the cells of green sulphur bacteria Chlorobium limicola Ya-2002].},
author = {Horishnyi MB, Hudz' SP, Hnatush SO.},
journal = {Ukr Biokhim Zh (1999)},
year = {2009},
pmid = {20387644}
}
@article{lin98076,
title = {Phosphorus deficiency and kinetics of alkaline phosphatase in isolates and natural populations of phototrophic sulphur bacteria.},
author = {Baneras L, Ros-Ponsati M, Cristina XP, Garcia-Gil JL, Borrego CM.},
journal = {FEMS Microbiol Ecol},
year = {2010},
doi = {10.1111/j.1574-6941.2010.00895.x},
pmid = {20491922}
}
@article{lin98024,
title = {Self-targeting by CRISPR: gene regulation or autoimmunity?},
author = {Stern A, Keren L, Wurtzel O, Amitai G, Sorek R.},
journal = {Trends Genet},
year = {2010},
doi = {10.1016/j.tig.2010.05.008},
pmid = {20598393}
}
@article{lin98173,
title = {Both forward and reverse TCA cycles operate in green sulfur bacteria.},
author = {Tang KH, Blankenship RE.},
journal = {J Biol Chem},
year = {2010},
doi = {10.1074/jbc.m110.157834},
pmid = {20650900}
}
@article{lin98161,
title = {Microbial oxidation of arsenite in a subarctic environment: diversity of arsenite oxidase genes and identification of a psychrotolerant arsenite oxidiser.},
author = {Osborne TH, Jamieson HE, Hudson-Edwards KA, Nordstrom DK, Walker SR, Ward SA, Santini JM.},
journal = {BMC Microbiol},
year = {2010},
doi = {10.1186/1471-2180-10-205},
pmid = {20673331}
}
@article{lin98201,
title = {The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments.},
author = {Aklujkar M, Young ND, Holmes D, Chavan M, Risso C, Kiss HE, Han CS, Land ML, Lovley DR.},
journal = {BMC Genomics},
year = {2010},
doi = {10.1186/1471-2164-11-490},
pmid = {20828392}
}
@article{lin98178,
title = {Structural model and spectroscopic characteristics of the FMO antenna protein from the aerobic chlorophototroph, Candidatus Chloracidobacterium thermophilum.},
author = {Wen J, Tsukatani Y, Cui W, Zhang H, Gross ML, Bryant DA, Blankenship RE.},
journal = {Biochim Biophys Acta},
year = {2011},
doi = {10.1016/j.bbabio.2010.09.008},
pmid = {20875391}
}
@article{lin98050,
title = {Functional Promiscuity of Homologues of the Bacterial ArsA ATPases.},
author = {Castillo R, Saier MH.},
journal = {Int J Microbiol},
year = {2010},
doi = {10.1155/2010/187373},
pmid = {20981284}
}
@article{lin98194,
title = {Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes.},
author = {Biegel E, Schmidt S, Gonzalez JM, Muller V.},
journal = {Cell Mol Life Sci},
year = {2011},
doi = {10.1007/s00018-010-0555-8},
pmid = {21072677}
}
@article{lin98025,
title = {Distribution analysis of hydrogenases in surface waters of marine and freshwater environments.},
author = {Barz M, Beimgraben C, Staller T, Germer F, Opitz F, Marquardt C, Schwarz C, Gutekunst K, Vanselow KH, Schmitz R, LaRoche J, Schulz R, Appel J.},
journal = {PLoS One},
year = {2010},
doi = {10.1371/journal.pone.0013846},
pmid = {21079771}
}
@article{lin98195,
title = {Dynamics in the mixed microbial concourse.},
author = {Wintermute EH, Silver PA.},
journal = {Genes Dev},
year = {2010},
doi = {10.1101/gad.1985210},
pmid = {21123647}
}
@article{lin98041,
title = {Molecular evolution of urea amidolyase and urea carboxylase in fungi.},
author = {Strope PK, Nickerson KW, Harris SD, Moriyama EN.},
journal = {BMC Evol Biol},
year = {2011},
doi = {10.1186/1471-2148-11-80},
pmid = {21447149}
}
@article{lin98146,
title = {Na+-translocating membrane pyrophosphatases are widespread in the microbial world and evolutionarily precede H+-translocating pyrophosphatases.},
author = {Luoto HH, Belogurov GA, Baykov AA, Lahti R, Malinen AM.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m111.244483},
pmid = {21527638}
}
@article{lin98036,
title = {Identification of a gene essential for the first committed step in the biosynthesis of bacteriochlorophyll c.},
author = {Liu Z, Bryant DA.},
journal = {J Biol Chem},
year = {2011},
doi = {10.1074/jbc.m111.249433},
pmid = {21550979}
}
@article{lin98042,
title = {Representative proteomes: a stable, scalable and unbiased proteome set for sequence analysis and functional annotation.},
author = {Chen C, Natale DA, Finn RD, Huang H, Zhang J, Wu CH, Mazumder R.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0018910},
pmid = {21556138}
}
@article{lin98039,
title = {Complete genome sequence of the filamentous anoxygenic phototrophic bacterium Chloroflexus aurantiacus.},
author = {Tang KH, Barry K, Chertkov O, Dalin E, Han CS, Hauser LJ, Honchak BM, Karbach LE, Land ML, Lapidus A, Larimer FW, Mikhailova N, Pitluck S, Pierson BK, Blankenship RE.},
journal = {BMC Genomics},
year = {2011},
doi = {10.1186/1471-2164-12-334},
pmid = {21714912}
}
@article{lin98005,
title = {Multiple types of 8-vinyl reductases for (bacterio)chlorophyll biosynthesis occur in many green sulfur bacteria.},
author = {Liu Z, Bryant DA.},
journal = {J Bacteriol},
year = {2011},
doi = {10.1128/jb.05520-11},
pmid = {21764919}
}
@article{lin98019,
title = {Close Interspecies Interactions between Prokaryotes from Sulfureous Environments.},
author = {Muller J, Overmann J.},
journal = {Front Microbiol},
year = {2011},
doi = {10.3389/fmicb.2011.00146},
pmid = {21779277}
}
@article{lin98032,
title = {Linking hydrothermal geochemistry to organismal physiology: physiological versatility in Riftia pachyptila from sedimented and basalt-hosted vents.},
author = {Robidart JC, Roque A, Song P, Girguis PR.},
journal = {PLoS One},
year = {2011},
doi = {10.1371/journal.pone.0021692},
pmid = {21779334}
}
@article{lin98023,
title = {Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.},
author = {Gregersen LH, Bryant DA, Frigaard NU.},
journal = {Front Microbiol},
year = {2011},
doi = {10.3389/fmicb.2011.00116},
pmid = {21833341}
}
@article{lin98033,
title = {Regulation of dissimilatory sulfur oxidation in the purple sulfur bacterium allochromatium vinosum.},
author = {Grimm F, Franz B, Dahl C.},
journal = {Front Microbiol},
year = {2011},
doi = {10.3389/fmicb.2011.00051},
pmid = {21927612}
}
@article{lin98004,
title = {An alternative path for the evolution of biological nitrogen fixation.},
author = {Boyd ES, Hamilton TL, Peters JW.},
journal = {Front Microbiol},
year = {2011},
doi = {10.3389/fmicb.2011.00205},
pmid = {22065963}
}
@article{lin98184,
title = {Sulfur bacteria in wastewater stabilization ponds periodically affected by the 'red-water' phenomenon.},
author = {Belila A, Abbas B, Fazaa I, Saidi N, Snoussi M, Hassen A, Muyzer G.},
journal = {Appl Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s00253-012-3931-5},
pmid = {22354366}
}
@article{lin98183,
title = {Novel antibiotics targeting respiratory ATP synthesis in Gram-positive pathogenic bacteria.},
author = {Balemans W, Vranckx L, Lounis N, Pop O, Guillemont J, Vergauwen K, Mol S, Gilissen R, Motte M, Lancois D, De Bolle M, Bonroy K, Lill H, Andries K, Bald D, Koul A.},
journal = {Antimicrob Agents Chemother},
year = {2012},
doi = {10.1128/aac.00273-12},
pmid = {22615276}
}
@article{lin98176,
title = {Event extraction of bacteria biotopes: a knowledge-intensive NLP-based approach.},
author = {Ratkovic Z, Golik W, Warnier P.},
journal = {BMC Bioinformatics},
year = {2012},
doi = {10.1186/1471-2105-13-s11-s8},
pmid = {22759462}
}
@article{lin98031,
title = {Complete genome sequence of Syntrophobacter fumaroxidans strain (MPOB(T)).},
author = {Plugge CM, Henstra AM, Worm P, Swarts DC, Paulitsch-Fuchs AH, Scholten JC, Lykidis A, Lapidus AL, Goltsman E, Kim E, McDonald E, Rohlin L, Crable BR, Gunsalus RP, Stams AJ, McInerney MJ.},
journal = {Stand Genomic Sci},
year = {2012},
doi = {10.4056/sigs.2996379},
pmid = {23450070}
}
@article{lin98034,
title = {Detection of secreted antimicrobial peptides isolated from cell-free culture supernatant of Paenibacillus alvei AN5.},
author = {Alkotaini B, Anuar N, Kadhum AA, Sani AA.},
journal = {J Ind Microbiol Biotechnol},
year = {2013},
doi = {10.1007/s10295-013-1259-5},
pmid = {23508455}
}
@article{lin98170,
title = {Construction of a phylogenetic tree of photosynthetic prokaryotes based on average similarities of whole genome sequences.},
author = {Satoh S, Mimuro M, Tanaka A.},
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title = {Effect of sulfate on low-temperature anaerobic digestion.},
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title = {The Crystal Structure of Thermotoga maritima Class III Ribonucleotide Reductase Lacks a Radical Cysteine Pre-Positioned in the Active Site.},
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title = {A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling.},
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title = {Biochemical Characterization and Complete Conversion of Coenzyme Specificity of Isocitrate Dehydrogenase from Bifidobacterium longum.},
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title = {Draft Genome Sequence of Lampenflora Chlorobium limicola Strain Frasassi in a Sulfidic Cave System.},
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journal = {Genome Announc},
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title = {A Dynamic 3D Graphical Representation for RNA Structure Analysis and Its Application in Non-Coding RNA Classification.},
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title = {Genome-Based Taxonomic Classification of Bacteroidetes.},
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title = {Reconciliation between operational taxonomic units and species boundaries.},
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title = {Nutrient Acquisition and the Metabolic Potential of Photoferrotrophic Chlorobi.},
author = {Thompson KJ, Simister RL, Hahn AS, Hallam SJ, Crowe SA.},
journal = {Front Microbiol},
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title = {Anaerobic Origin of Ergothioneine.},
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journal = {Angew Chem Int Ed Engl},
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title = {Metagenomic analysis reveals a green sulfur bacterium as a potential coral symbiont.},
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title = {Individual Patterns of Complexity in Cystic Fibrosis Lung Microbiota, Including Predator Bacteria, over a 1-Year Period.},
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title = {The Membrane Attack Complex/Perforin Superfamily.},
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journal = {J Mol Microbiol Biotechnol},
year = {2017},
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title = {Differential RNA Sequencing Implicates Sulfide as the Master Regulator of S0 Metabolism in Chlorobaculum tepidum and Other Green Sulfur Bacteria.},
author = {Hilzinger JM, Raman V, Shuman KE, Eddie BJ, Hanson TE.},
journal = {Appl Environ Microbiol},
year = {2018},
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@article{lin98000,
title = {Antimicrobial activity of gallic acid against food-related Pseudomonas strains and its use as biocontrol tool to improve the shelf life of fresh black truffles.},
author = {Sorrentino E, Succi M, Tipaldi L, Pannella G, Maiuro L, Sturchio M, Coppola R, Tremonte P.},
journal = {Int J Food Microbiol},
year = {2018},
doi = {10.1016/j.ijfoodmicro.2017.11.026},
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@article{lin98156,
title = {Snapshots of C-S Cleavage in Egt2 Reveals Substrate Specificity and Reaction Mechanism.},
author = {Irani S, Naowarojna N, Tang Y, Kathuria KR, Wang S, Dhembi A, Lee N, Yan W, Lyu H, Costello CE, Liu P, Zhang YJ.},
journal = {Cell Chem Biol},
year = {2018},
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@article{lin98022,
title = {Mini-Review: Ergothioneine and Ovothiol Biosyntheses, an Unprecedented Trans-Sulfur Strategy in Natural Product Biosynthesis.},
author = {Naowarojna N, Cheng R, Chen L, Quill M, Xu M, Zhao C, Liu P.},
journal = {Biochemistry},
year = {2018},
doi = {10.1021/acs.biochem.8b00239},
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@article{lin98035,
title = {Complete genome sequence of "Thiodictyon syntrophicum" sp. nov. strain Cad16T, a photolithoautotrophic purple sulfur bacterium isolated from the alpine meromictic Lake Cadagno.},
author = {Luedin SM, Pothier JF, Danza F, Storelli N, Frigaard NU, Wittwer M, Tonolla M.},
journal = {Stand Genomic Sci},
year = {2018},
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@article{lin98074,
title = {Construction of a Geobacter Strain With Exceptional Growth on Cathodes.},
author = {Ueki T, Nevin KP, Woodard TL, Aklujkar MA, Holmes DE, Lovley DR.},
journal = {Front Microbiol},
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title = {CitE Enzymes Are Essential for Mycobacterium tuberculosis to Establish Infection in Macrophages and Guinea Pigs.},
author = {Arora G, Chaudhary D, Kidwai S, Sharma D, Singh R.},
journal = {Front Cell Infect Microbiol},
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doi = {10.3389/fcimb.2018.00385},
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@article{lin98093,
title = {Physiological Studies of Chlorobiaceae Suggest that Bacillithiol Derivatives Are the Most Widespread Thiols in Bacteria.},
author = {Hiras J, Sharma SV, Raman V, Tinson RAJ, Arbach M, Rodrigues DF, Norambuena J, Hamilton CJ, Hanson TE.},
journal = {mBio},
year = {2018},
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title = {N-methyl-bacillithiol, a Novel Thiol from Anaerobic Bacteria.},
author = {Newton GL, Rawat M.},
journal = {mBio},
year = {2019},
doi = {10.1128/mbio.02634-18},
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title = {Diversity and Distribution of Sulfur Oxidation-Related Genes in Thioalkalivibrio, a Genus of Chemolithoautotrophic and Haloalkaliphilic Sulfur-Oxidizing Bacteria.},
author = {Berben T, Overmars L, Sorokin DY, Muyzer G.},
journal = {Front Microbiol},
year = {2019},
doi = {10.3389/fmicb.2019.00160},
pmid = {30837958}
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@article{lin98055,
title = {Structural and Mechanistic Basis for Anaerobic Ergothioneine Biosynthesis.},
author = {Leisinger F, Burn R, Meury M, Lukat P, Seebeck FP.},
journal = {J Am Chem Soc},
year = {2019},
doi = {10.1021/jacs.8b12596},
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@article{lin98124,
title = {Aggregatibacter actinomycetemcomitans (Aa) Under the Radar: Myths and Misunderstandings of Aa and Its Role in Aggressive Periodontitis.},
author = {Fine DH, Patil AG, Velusamy SK.},
journal = {Front Immunol},
year = {2019},
doi = {10.3389/fimmu.2019.00728},
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@article{lin98155,
title = {System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris.},
author = {Navid A, Jiao Y, Wong SE, Pett-Ridge J.},
journal = {BMC Bioinformatics},
year = {2019},
doi = {10.1186/s12859-019-2844-z},
pmid = {31072303}
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@article{lin98069,
title = {Identification of the active site residues in ATP-citrate lyase's carboxy-terminal portion.},
author = {Nguyen VH, Singh N, Medina A, Uson I, Fraser ME.},
journal = {Protein Sci},
year = {2019},
doi = {10.1002/pro.3708},
pmid = {31411782}
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@article{lin98118,
title = {Engineering the Yeast Saccharomyces cerevisiae for the Production of L-(+)-Ergothioneine.},
author = {van der Hoek SA, Darbani B, Zugaj KE, Prabhala BK, Biron MB, Randelovic M, Medina JB, Kell DB, Borodina I.},
journal = {Front Bioeng Biotechnol},
year = {2019},
doi = {10.3389/fbioe.2019.00262},
pmid = {31681742}
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@article{lin98100,
title = {The hidden chemolithoautotrophic metabolism of Geobacter sulfurreducens uncovered by adaptation to formate.},
author = {Zhang T, Shi XC, Ding R, Xu K, Tremblay PL.},
journal = {ISME J},
year = {2020},
doi = {10.1038/s41396-020-0673-8},
pmid = {32398660}
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@article{lin98135,
title = {The H+-Translocating Inorganic Pyrophosphatase From Arabidopsis thaliana Is More Sensitive to Sodium Than Its Na+-Translocating Counterpart From Methanosarcina mazei.},
author = {Perez-Castineira JR, Serrano A.},
journal = {Front Plant Sci},
year = {2020},
doi = {10.3389/fpls.2020.01240},
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@article{lin98006,
title = {Osmotic Adaptation and Compatible Solute Biosynthesis of Phototrophic Bacteria as Revealed from Genome Analyses.},
author = {Imhoff JF, Rahn T, Kunzel S, Keller A, Neulinger SC.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms9010046},
pmid = {33375353}
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@article{lin98045,
title = {Information theoretic perspective on genome clustering.},
author = {Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.},
journal = {Saudi J Biol Sci},
year = {2021},
doi = {10.1016/j.sjbs.2020.12.039},
pmid = {33732074}
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@article{lin98027,
title = {Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom.},
author = {Bhatnagar S, Cowley ES, Kopf SH, Perez Castro S, Kearney S, Dawson SC, Hanselmann K, Ruff SE.},
journal = {Environ Microbiome},
year = {2020},
doi = {10.1186/s40793-019-0348-0},
pmid = {33902727}
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@article{lin98094,
title = {Metabolic Adaptations to Marine Environments: Molecular Diversity and Evolution of Ovothiol Biosynthesis in Bacteria.},
author = {Brancaccio M, Tangherlini M, Danovaro R, Castellano I.},
journal = {Genome Biol Evol},
year = {2021},
doi = {10.1093/gbe/evab169},
pmid = {34272861}
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@article{lin98080,
title = {Single-step Replacement of an Unreactive C-H Bond by a C-S Bond Using Polysulfide as the Direct Sulfur Source in Anaerobic Ergothioneine Biosynthesis.},
author = {Cheng R, Wu L, Lai R, Peng C, Naowarojna N, Hu W, Li X, Whelan SA, Lee N, Lopez J, Zhao C, Yong Y, Xue J, Jiang X, Grinstaff MW, Deng Z, Chen J, Cui Q, Zhou J, Liu P.},
journal = {ACS Catal},
year = {2020},
doi = {10.1021/acscatal.0c01809},
pmid = {34306804}
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@article{lin98013,
title = {The Histidine Biosynthetic Genes in the Superphylum Bacteroidota-Rhodothermota-Balneolota-Chlorobiota: Insights into the Evolution of Gene Structure and Organization.},
author = {Del Duca S, Riccardi C, Vassallo A, Fontana G, Castronovo LM, Chioccioli S, Fani R.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9071439},
pmid = {34361875}
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@article{lin98095,
title = {Catalytic Asymmetry in Homodimeric H+-Pumping Membrane Pyrophosphatase Demonstrated by Non-Hydrolyzable Pyrophosphate Analogs.},
author = {Anashkin VA, Malinen AM, Bogachev AV, Baykov AA.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms22189820},
pmid = {34575984}
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@article{lin98081,
title = {OvoAMtht from Methyloversatilis thermotolerans ovothiol biosynthesis is a bifunction enzyme: thiol oxygenase and sulfoxide synthase activities.},
author = {Cheng R, Weitz AC, Paris J, Tang Y, Zhang J, Song H, Naowarojna N, Li K, Qiao L, Lopez J, Grinstaff MW, Zhang L, Guo Y, Elliott S, Liu P.},
journal = {Chem Sci},
year = {2022},
doi = {10.1039/d1sc05479a},
pmid = {35432880}
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@article{lin98001,
title = {Ergothioneine, Ovothiol A, and Selenoneine-Histidine-Derived, Biologically Significant, Trace Global Alkaloids.},
author = {Cordell GA, Lamahewage SNS.},
journal = {Molecules},
year = {2022},
doi = {10.3390/molecules27092673},
pmid = {35566030}
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@article{lin98098,
title = {Phylogenomic Analyses and Molecular Signatures Elucidating the Evolutionary Relationships amongst the Chlorobia and Ignavibacteria Species: Robust Demarcation of Two Family-Level Clades within the Order Chlorobiales and Proposal for the Family Chloroherpetonaceae fam. nov.},
author = {Bello S, Howard-Azzeh M, Schellhorn HE, Gupta RS.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10071312},
pmid = {35889031}
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@article{lin98078,
title = {A Single Aspergillus fumigatus Gene Enables Ergothioneine Biosynthesis and Secretion by Saccharomyces cerevisiae.},
author = {Doyle S, Cuskelly DD, Conlon N, Fitzpatrick DA, Gilmartin CB, Dix SH, Jones GW.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms231810832},
pmid = {36142753}
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@article{lin98073,
title = {Discovery and Characterization of the Metallopterin-Dependent Ergothioneine Synthase from Caldithrix abyssi.},
author = {Beliaeva MA, Seebeck FP.},
journal = {JACS Au},
year = {2022},
doi = {10.1021/jacsau.2c00365},
pmid = {36186560}
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@article{lin98088,
title = {Chimeric inheritance and crown-group acquisitions of carbon fixation genes within Chlorobiales: Origins of autotrophy in Chlorobiales and implication for geological biomarkers.},
author = {Paoletti MM, Fournier GP.},
journal = {PLoS One},
year = {2022},
doi = {10.1371/journal.pone.0275539},
pmid = {36227849}
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@article{lin98003,
title = {Deep Learning Encoding for Rapid Sequence Identification on Microbiome Data.},
author = {Borgman J, Stark K, Carson J, Hauser L.},
journal = {Front Bioinform},
year = {2022},
doi = {10.3389/fbinf.2022.871256},
pmid = {36304316}
}
@article{lin98053,
title = {Photoautotrophic removal of hydrogen sulfide from biogas using purple and green sulfur bacteria.},
author = {Struk M, Sepulveda-Munoz CA, Kushkevych I, Munoz R.},
journal = {J Hazard Mater},
year = {2023},
doi = {10.1016/j.jhazmat.2022.130337},
pmid = {36370482}
}
@article{lin98063,
title = {Comparative Transcriptomics Sheds Light on Remodeling of Gene Expression during Diazotrophy in the Thermophilic Methanogen Methanothermococcus thermolithotrophicus.},
author = {Maslac N, Sidhu C, Teeling H, Wagner T.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.02443-22},
pmid = {36409126}
}
@article{lin98057,
title = {DNA accelerates the protease inhibition of a bacterial serpin chloropin.},
author = {Xu J, Ye W, Yang TT, Yan T, Cai H, Zhou A, Yang Y.},
journal = {Front Mol Biosci},
year = {2023},
doi = {10.3389/fmolb.2023.1157186},
pmid = {37065444}
}
@article{lin98102,
title = {Soluble domains of cytochrome c-556 and Rieske iron-sulfur protein from Chlorobaculum tepidum: Crystal structures and interaction analysis.},
author = {Kishimoto H, Azai C, Yamamoto T, Mutoh R, Nakaniwa T, Tanaka H, Miyanoiri Y, Kurisu G, Oh-Oka H.},
journal = {Curr Res Struct Biol},
year = {2023},
doi = {10.1016/j.crstbi.2023.100101},
pmid = {37180033}
}
@article{lin98058,
title = {Insights into Enzyme Reactions with Redox Cofactors in Biological Conversion of CO2.},
author = {Kang DK, Kim SH, Sohn JH, Sung BH.},
journal = {J Microbiol Biotechnol},
year = {2023},
doi = {10.4014/jmb.2306.06005},
pmid = {37482811}
}
@article{lin98090,
title = {Elucidating regulatory processes of intense physical activity by multi-omics analysis.},
author = {Nakayasu ES, Gritsenko MA, Kim YM, Kyle JE, Stratton KG, Nicora CD, Munoz N, Navarro KM, Claborne D, Gao Y, Weitz KK, Paurus VL, Bloodsworth KJ, Allen KA, Bramer LM, Montes F, Clark KA, Tietje G, Teeguarden J, Burnum-Johnson KE.},
journal = {Mil Med Res},
year = {2023},
doi = {10.1186/s40779-023-00477-5},
pmid = {37853489}
}
@article{lin98067,
title = {Biochemical and Structural Characterization of OvoATh2: A Mononuclear Nonheme Iron Enzyme from Hydrogenimonas thermophila for Ovothiol Biosynthesis.},
author = {Wang X, Hu S, Wang J, Zhang T, Ye K, Wen A, Zhu G, Vegas A, Zhang L, Yan W, Liu X, Liu P.},
journal = {ACS Catal},
year = {2023},
doi = {10.1021/acscatal.3c04026},
pmid = {38058600}
}
@article{lin97999,
title = {Pontiella agarivorans sp. nov., a novel marine anaerobic bacterium capable of degrading macroalgal polysaccharides and fixing nitrogen.},
author = {Liu N, Kivenson V, Peng X, Cui Z, Lankiewicz TS, Gosselin KM, English CJ, Blair EM, O'Malley MA, Valentine DL.},
journal = {Appl Environ Microbiol},
year = {2024},
doi = {10.1128/aem.00914-23},
pmid = {38265213}
}
@article{lin98059,
title = {A Novel View of the Diversity of Anoxygenic Phototrophic Bacteria Inhabiting the Chemocline of Meromictic Karst Lakes.},
author = {Gorlenko V, Savvichev A, Kadnikov V, Rusanov I, Beletsky A, Zakharova E, Kostrikina N, Sigalevich P, Veslopolova E, Pimenov N.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms12010013},
pmid = {38276182}
}
@article{lin97998,
title = {Endosymbiotic bacteria within the nematode-trapping fungus Arthrobotrys musiformis and their potential roles in nitrogen cycling.},
author = {Zheng H, Chen T, Li W, Hong J, Xu J, Yu Z.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1349447},
pmid = {38348183}
}
@article{lin98085,
title = {Artificial organelles for sustainable chemical energy conversion and production in artificial cells: Artificial mitochondrion and chloroplasts.},
author = {Park H, Wang W, Min SH, Ren Y, Shin K, Han X.},
journal = {Biophys Rev (Melville)},
year = {2023},
doi = {10.1063/5.0131071},
pmid = {38510162}
}
@article{lin98064,
title = {Anoxygenic photosynthesis with emphasis on green sulfur bacteria and a perspective for hydrogen sulfide detoxification of anoxic environments.},
author = {Kushkevych I, Prochazka V, Vitezova M, Dordevic D, Abd El-Salam M, Rittmann SKR.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1417714},
pmid = {39056005}
}
@article{lin98061,
title = {H+-translocating pyrophosphatases in protozoan parasites.},
author = {Araujo-Ruiz K, Mondragon-Flores R.},
journal = {Parasitol Res},
year = {2024},
doi = {10.1007/s00436-024-08362-3},
pmid = {39419910}
}
@article{lin98052,
title = {Heterologous and High Production of Ergothioneine in Bacillus licheniformis by Using Genes from Anaerobic Bacteria.},
author = {Liu Z, Xiao F, Zhang Y, Lu J, Li Y, Shi G.},
journal = {Metabolites},
year = {2025},
doi = {10.3390/metabo15010045},
pmid = {39852388}
}
@article{lin98066,
title = {Genomic highlights of the phylogenetically unique halophilic purple nonsulfur bacterium, Rhodothalassium salexigens.},
author = {Madigan MT, Bender KS, Parenteau MN, Kimura Y, Wang-Otomo ZY, Sattley WM.},
journal = {Extremophiles},
year = {2025},
doi = {10.1007/s00792-025-01380-8},
pmid = {39862325}
}
@article{lin98054,
title = {A Review of Novel Antioxidant Ergothioneine: Biosynthesis Pathways, Production, Function and Food Applications.},
author = {Zhang H, Liu Z, Wang Z, Lei Z, Jia Y, Chen W, Shi R, Wang C.},
journal = {Foods},
year = {2025},
doi = {10.3390/foods14091588},
pmid = {40361673}
}
@article{lin97996,
title = {Arsenic Accumulation in Microbial Biomass and the Interpretation of Signals of Early Arsenic-Based Metabolisms.},
author = {Madrigal-Trejo D, Baldes MJ, Tamura N, Klepac-Ceraj V, Bosak T.},
journal = {Geobiology},
year = {2025},
doi = {10.1111/gbi.70024},
pmid = {40512990}
}
@article{lin98068,
title = {In vitro demonstration and in planta characterization of a condensed, reverse TCA (crTCA) cycle.},
author = {Wilson N, Smith-Moore C, Xu Y, Edwards B, La Hovary C, Li K, Aslett D, Ji M, Lin X, Vintila S, Kleiner M, Xie D, Shachar-Hill Y, Grunden A, Sederoff H.},
journal = {Front Plant Sci},
year = {2025},
doi = {10.3389/fpls.2025.1556957},
pmid = {40551776}
}
@article{lin98056,
title = {The Current Situation and Future Trends of Ergothioneine in Biology and Medical Research: A Bibliometric Analysis.},
author = {Fu Y, Guan H, Yu M, Jiang P, He X, Bao J, Zhang B, Li Y.},
journal = {J Multidiscip Healthc},
year = {2025},
doi = {10.2147/jmdh.s547548},
pmid = {41040427}
}
@article{lin98062,
title = {Signal-strapping as a protein-sequence search method for the discovery of metalloproteins.},
author = {Franco Cairo JPL, Correa TLR, Offen WA, Nairn AK, Walton J, Sweeney ST, Davies GJ, Walton PH.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-64309-x},
pmid = {41115942}
}