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title = {Identification of Gut Microbiome Signatures Associated with Indole Pathway in Tryptophan Metabolism in Patients Undergoing Hemodialysis},
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journal = {Biomolecules},
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journal = {Int J Mol Sci},
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title = {High-throughput screening of the effects of 90 xenobiotics on the simplified human gut microbiota model (SIHUMIx): a metaproteomic and metabolomic study},
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journal = {Front Microbiol},
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title = {Reclassification of Clostridium coccoides, Ruminococcus hansenii, Ruminococcus hydrogenotrophicus, Ruminococcus luti, Ruminococcus productus and Ruminococcus schinkii as Blautia coccoides gen. nov., comb. nov., Blautia hansenii comb. nov., Blautia hydrogenotrophica comb. nov., Blautia luti comb. nov., Blautia producta comb. nov., Blautia schinkii comb. nov. and description of Blautia wexlerae sp. nov., isolated from human faeces.},
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doi = {10.1111/j.1574-6941.2010.00863.x},
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title = {Functional gene analysis suggests different acetogen populations in the bovine rumen and tammar wallaby forestomach.},
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journal = {Appl Environ Microbiol},
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title = {Spatial organization of intestinal microbiota in the mouse ascending colon.},
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journal = {ISME J},
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title = {Blautia stercoris sp. nov., isolated from human faeces.},
author = {Park SK, Kim MS, Roh SW, Bae JW},
journal = {Int J Syst Evol Microbiol},
year = {2011},
doi = {10.1099/ijs.0.031625-0},
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title = {Human intestinal microbiota: characterization of a simplified and stable gnotobiotic rat model.},
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journal = {Gut Microbes},
year = {2011},
doi = {10.4161/gmic.2.1.14651},
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@article{lin278596,
title = {Lignan transformation by gut bacteria lowers tumor burden in a gnotobiotic rat model of breast cancer.},
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journal = {Carcinogenesis},
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doi = {10.1093/carcin/bgr256},
pmid = {22080573}
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@article{lin278727,
title = {An ancient pathway combining carbon dioxide fixation with the generation and utilization of a sodium ion gradient for ATP synthesis.},
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journal = {PLoS One},
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@article{lin278694,
title = {First Korean case of Robinsoniella peoriensis bacteremia in a patient with aspiration pneumonia.},
author = {Jeon Y, Kim TS, Kim HB, Park KU, Song J, Kim EC.},
journal = {Ann Lab Med},
year = {2012},
doi = {10.3343/alm.2012.32.5.370},
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@article{lin278447,
title = {Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol.},
author = {Milani C, Hevia A, Foroni E, Duranti S, Turroni F, Lugli GA, Sanchez B, Martin R, Gueimonde M, van Sinderen D, Margolles A, Ventura M.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0068739},
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@article{lin278459,
title = {Commensal Akkermansia muciniphila exacerbates gut inflammation in Salmonella Typhimurium-infected gnotobiotic mice.},
author = {Ganesh BP, Klopfleisch R, Loh G, Blaut M.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0074963},
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@article{lin278446,
title = {Association of germ-free mice with a simplified human intestinal microbiota results in a shortened intestine.},
author = {Slezak K, Krupova Z, Rabot S, Loh G, Levenez F, Descamps A, Lepage P, Dore J, Bellier S, Blaut M.},
journal = {Gut Microbes},
year = {2014},
doi = {10.4161/gmic.28203},
pmid = {24637599}
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@article{lin278484,
title = {Upregulation of colonic luminal polyamines produced by intestinal microbiota delays senescence in mice.},
author = {Kibe R, Kurihara S, Sakai Y, Suzuki H, Ooga T, Sawaki E, Muramatsu K, Nakamura A, Yamashita A, Kitada Y, Kakeyama M, Benno Y, Matsumoto M.},
journal = {Sci Rep},
year = {2014},
doi = {10.1038/srep04548},
pmid = {24686447}
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@article{lin278737,
title = {The first 1000 cultured species of the human gastrointestinal microbiota.},
author = {Rajilic-Stojanovic M, de Vos WM.},
journal = {FEMS Microbiol Rev},
year = {2014},
doi = {10.1111/1574-6976.12075},
pmid = {24861948}
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@article{lin278732,
title = {Evidence for a hexaheteromeric methylenetetrahydrofolate reductase in Moorella thermoacetica.},
author = {Mock J, Wang S, Huang H, Kahnt J, Thauer RK.},
journal = {J Bacteriol},
year = {2014},
doi = {10.1128/jb.01839-14},
pmid = {25002540}
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@article{lin278707,
title = {Systematic analysis of the association between gut flora and obesity through high-throughput sequencing and bioinformatics approaches.},
author = {Chiu CM, Huang WC, Weng SL, Tseng HC, Liang C, Wang WC, Yang T, Yang TL, Weng CT, Chang TH, Huang HD.},
journal = {Biomed Res Int},
year = {2014},
doi = {10.1155/2014/906168},
pmid = {25202708}
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@article{lin278455,
title = {Clostridium ramosum promotes high-fat diet-induced obesity in gnotobiotic mouse models.},
author = {Woting A, Pfeiffer N, Loh G, Klaus S, Blaut M.},
journal = {mBio},
year = {2014},
doi = {10.1128/mbio.01530-14},
pmid = {25271283}
}
@article{lin278570,
title = {Murimonas intestini gen. nov., sp. nov., an acetate-producing bacterium of the family Lachnospiraceae isolated from the mouse gut.},
author = {Klaring K, Just S, Lagkouvardos I, Hanske L, Haller D, Blaut M, Wenning M, Clavel T.},
journal = {Int J Syst Evol Microbiol},
year = {2015},
doi = {10.1099/ijs.0.000030},
pmid = {25519299}
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@article{lin278470,
title = {Effect of Bile Salt Hydrolase Inhibitors on a Bile Salt Hydrolase from Lactobacillus acidophilus.},
author = {Lin J, Negga R, Zeng X, Smith K.},
journal = {Pathogens},
year = {2014},
doi = {10.3390/pathogens3040947},
pmid = {25526498}
}
@article{lin278482,
title = {Human Clostridium difficile infection: inhibition of NHE3 and microbiota profile.},
author = {Engevik MA, Engevik KA, Yacyshyn MB, Wang J, Hassett DJ, Darien B, Yacyshyn BR, Worrell RT.},
journal = {Am J Physiol Gastrointest Liver Physiol},
year = {2015},
doi = {10.1152/ajpgi.00090.2014},
pmid = {25552580}
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@article{lin278695,
title = {Changes in gut microbiota in rats fed a high fat diet correlate with obesity-associated metabolic parameters.},
author = {Lecomte V, Kaakoush NO, Maloney CA, Raipuria M, Huinao KD, Mitchell HM, Morris MJ.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0126931},
pmid = {25992554}
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@article{lin278724,
title = {CO Metabolism in the Acetogen Acetobacterium woodii.},
author = {Bertsch J, Muller V.},
journal = {Appl Environ Microbiol},
year = {2015},
doi = {10.1128/aem.01772-15},
pmid = {26092462}
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@article{lin278726,
title = {A biosynthetic pathway for a prominent class of microbiota-derived bile acids.},
author = {Devlin AS, Fischbach MA.},
journal = {Nat Chem Biol},
year = {2015},
doi = {10.1038/nchembio.1864},
pmid = {26192599}
}
@article{lin278456,
title = {Alleviation of high fat diet-induced obesity by oligofructose in gnotobiotic mice is independent of presence of Bifidobacterium longum.},
author = {Woting A, Pfeiffer N, Hanske L, Loh G, Klaus S, Blaut M.},
journal = {Mol Nutr Food Res},
year = {2015},
doi = {10.1002/mnfr.201500249},
pmid = {26202344}
}
@article{lin278731,
title = {Candida albicans Inhibits Pseudomonas aeruginosa Virulence through Suppression of Pyochelin and Pyoverdine Biosynthesis.},
author = {Lopez-Medina E, Fan D, Coughlin LA, Ho EX, Lamont IL, Reimmann C, Hooper LV, Koh AY.},
journal = {PLoS Pathog},
year = {2015},
doi = {10.1371/journal.ppat.1005129},
pmid = {26313907}
}
@article{lin278689,
title = {The effect of diet and host genotype on ceca microbiota of Japanese quail fed a cholesterol enriched diet.},
author = {Liu S, Bennett DC, Tun HM, Kim JE, Cheng KM, Zhang H, Leung FC.},
journal = {Front Microbiol},
year = {2015},
doi = {10.3389/fmicb.2015.01092},
pmid = {26500632}
}
@article{lin278720,
title = {CO Metabolism in the Thermophilic Acetogen Thermoanaerobacter kivui.},
author = {Weghoff MC, Muller V.},
journal = {Appl Environ Microbiol},
year = {2016},
doi = {10.1128/aem.00122-16},
pmid = {26850300}
}
@article{lin278485,
title = {Microbiota-driven transcriptional changes in prefrontal cortex override genetic differences in social behavior.},
author = {Gacias M, Gaspari S, Santos PM, Tamburini S, Andrade M, Zhang F, Shen N, Tolstikov V, Kiebish MA, Dupree JL, Zachariou V, Clemente JC, Casaccia P.},
journal = {Elife},
year = {2016},
doi = {10.7554/elife.13442},
pmid = {27097105}
}
@article{lin278483,
title = {Age-related changes in gut microbiota composition from newborn to centenarian: a cross-sectional study.},
author = {Odamaki T, Kato K, Sugahara H, Hashikura N, Takahashi S, Xiao JZ, Abe F, Osawa R.},
journal = {BMC Microbiol},
year = {2016},
doi = {10.1186/s12866-016-0708-5},
pmid = {27220822}
}
@article{lin278669,
title = {Infant Early Gut Colonization by Lachnospiraceae: High Frequency of Ruminococcus gnavus.},
author = {Sagheddu V, Patrone V, Miragoli F, Puglisi E, Morelli L.},
journal = {Front Pediatr},
year = {2016},
doi = {10.3389/fped.2016.00057},
pmid = {27313996}
}
@article{lin278657,
title = {Impact of dietary resistant starch type 4 on human gut microbiota and immunometabolic functions.},
author = {Upadhyaya B, McCormack L, Fardin-Kia AR, Juenemann R, Nichenametla S, Clapper J, Specker B, Dey M.},
journal = {Sci Rep},
year = {2016},
doi = {10.1038/srep28797},
pmid = {27356770}
}
@article{lin278487,
title = {Early-Life Events, Including Mode of Delivery and Type of Feeding, Siblings and Gender, Shape the Developing Gut Microbiota.},
author = {Martin R, Makino H, Cetinyurek Yavuz A, Ben-Amor K, Roelofs M, Ishikawa E, Kubota H, Swinkels S, Sakai T, Oishi K, Kushiro A, Knol J.},
journal = {PLoS One},
year = {2016},
doi = {10.1371/journal.pone.0158498},
pmid = {27362264}
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@article{lin278650,
title = {Microflora Disturbance during Progression of Glucose Intolerance and Effect of Sitagliptin: An Animal Study.},
author = {Yan X, Feng B, Li P, Tang Z, Wang L.},
journal = {J Diabetes Res},
year = {2016},
doi = {10.1155/2016/2093171},
pmid = {27631013}
}
@article{lin278725,
title = {The impact of sequence database choice on metaproteomic results in gut microbiota studies.},
author = {Tanca A, Palomba A, Fraumene C, Pagnozzi D, Manghina V, Deligios M, Muth T, Rapp E, Martens L, Addis MF, Uzzau S.},
journal = {Microbiome},
year = {2016},
doi = {10.1186/s40168-016-0196-8},
pmid = {27671352}
}
@article{lin278730,
title = {A Disease-Associated Microbial and Metabolomics State in Relatives of Pediatric Inflammatory Bowel Disease Patients.},
author = {Jacobs JP, Goudarzi M, Singh N, Tong M, McHardy IH, Ruegger P, Asadourian M, Moon BH, Ayson A, Borneman J, McGovern DP, Fornace AJ, Braun J, Dubinsky M.},
journal = {Cell Mol Gastroenterol Hepatol},
year = {2016},
doi = {10.1016/j.jcmgh.2016.06.004},
pmid = {28174747}
}
@article{lin278662,
title = {Gut Microbiota in a Rat Oral Sensitization Model: Effect of a Cocoa-Enriched Diet.},
author = {Camps-Bossacoma M, Perez-Cano FJ, Franch A, Castell M.},
journal = {Oxid Med Cell Longev},
year = {2017},
doi = {10.1155/2017/7417505},
pmid = {28239436}
}
@article{lin278629,
title = {Oral Health of Patients Treated with Acrylic Partial Dentures Using a Toothpaste Containing Bee Product.},
author = {Wiatrak K, Morawiec T, Roj R, Mertas A, Machorowska-Pieniazek A, Kownacki P, Tanasiewicz M, Skucha-Nowak M, Baron S, Piekarz T, Wrzol M, Bogacz M, Kasperski J, Niedzielska I.},
journal = {Evid Based Complement Alternat Med},
year = {2017},
doi = {10.1155/2017/4034179},
pmid = {28265291}
}
@article{lin278640,
title = {Sensitivity to oxazolone induced dermatitis is transferable with gut microbiota in mice.},
author = {Zachariassen LF, Krych L, Engkilde K, Nielsen DS, Kot W, Hansen CH, Hansen AK.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/srep44385},
pmid = {28290517}
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@article{lin278714,
title = {Identification and characterization of a 20beta-HSDH from the anaerobic gut bacterium Butyricicoccus desmolans ATCC 43058.},
author = {Devendran S, Mendez-Garcia C, Ridlon JM.},
journal = {J Lipid Res},
year = {2017},
doi = {10.1194/jlr.m074914},
pmid = {28314858}
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@article{lin278593,
title = {Effect of Lactobacillus rhamnosus HN001 and Bifidobacterium longum BB536 on the healthy gut microbiota composition at phyla and species level: A preliminary study.},
author = {Toscano M, De Grandi R, Stronati L, De Vecchi E, Drago L.},
journal = {World J Gastroenterol},
year = {2017},
doi = {10.3748/wjg.v23.i15.2696},
pmid = {28487606}
}
@article{lin278619,
title = {Cooperating Commensals Restore Colonization Resistance to Vancomycin-Resistant Enterococcus faecium.},
author = {Caballero S, Kim S, Carter RA, Leiner IM, Susac B, Miller L, Kim GJ, Ling L, Pamer EG.},
journal = {Cell Host Microbe},
year = {2017},
doi = {10.1016/j.chom.2017.04.002},
pmid = {28494240}
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@article{lin278451,
title = {BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities.},
author = {Bauer E, Zimmermann J, Baldini F, Thiele I, Kaleta C.},
journal = {PLoS Comput Biol},
year = {2017},
doi = {10.1371/journal.pcbi.1005544},
pmid = {28531184}
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@article{lin278718,
title = {Nopal (Opuntia ficus indica) protects from metabolic endotoxemia by modifying gut microbiota in obese rats fed high fat/sucrose diet.},
author = {Sanchez-Tapia M, Aguilar-Lopez M, Perez-Cruz C, Pichardo-Ontiveros E, Wang M, Donovan SM, Tovar AR, Torres N.},
journal = {Sci Rep},
year = {2017},
doi = {10.1038/s41598-017-05096-4},
pmid = {28680065}
}
@article{lin278634,
title = {Abundance and Diversity of Hydrogenotrophic Microorganisms in the Infant Gut before the Weaning Period Assessed by Denaturing Gradient Gel Electrophoresis and Quantitative PCR.},
author = {Sagheddu V, Patrone V, Miragoli F, Morelli L.},
journal = {Front Nutr},
year = {2017},
doi = {10.3389/fnut.2017.00029},
pmid = {28695121}
}
@article{lin278445,
title = {Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation.},
author = {Wlodarska M, Luo C, Kolde R, d'Hennezel E, Annand JW, Heim CE, Krastel P, Schmitt EK, Omar AS, Creasey EA, Garner AL, Mohammadi S, O'Connell DJ, Abubucker S, Arthur TD, Franzosa EA, Huttenhower C, Murphy LO, Haiser HJ, Vlamakis H, Porter JA, Xavier RJ.},
journal = {Cell Host Microbe},
year = {2017},
doi = {10.1016/j.chom.2017.06.007},
pmid = {28704649}
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@article{lin278614,
title = {Vasopressin deletion is associated with sex-specific shifts in the gut microbiome.},
author = {Fields CT, Chassaing B, Paul MJ, Gewirtz AT, de Vries GJ.},
journal = {Gut Microbes},
year = {2018},
doi = {10.1080/19490976.2017.1356557},
pmid = {28759308}
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@article{lin278729,
title = {A single early-in-life macrolide course has lasting effects on murine microbial network topology and immunity.},
author = {Ruiz VE, Battaglia T, Kurtz ZD, Bijnens L, Ou A, Engstrand I, Zheng X, Iizumi T, Mullins BJ, Muller CL, Cadwell K, Bonneau R, Perez-Perez GI, Blaser MJ.},
journal = {Nat Commun},
year = {2017},
doi = {10.1038/s41467-017-00531-6},
pmid = {28894149}
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@article{lin278728,
title = {Enterococci and Their Interactions with the Intestinal Microbiome.},
author = {Dubin K, Pamer EG.},
journal = {Microbiol Spectr},
year = {2014},
doi = {10.1128/microbiolspec.bad-0014-2016},
pmid = {29125098}
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@article{lin278680,
title = {Interactions between species introduce spurious associations in microbiome studies.},
author = {Menon R, Ramanan V, Korolev KS.},
journal = {PLoS Comput Biol},
year = {2018},
doi = {10.1371/journal.pcbi.1005939},
pmid = {29338008}
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@article{lin278698,
title = {Faecalibacterium prausnitzii and a Prebiotic Protect Intestinal Health in a Mouse Model of Antibiotic and Clostridium difficile Exposure.},
author = {Roychowdhury S, Cadnum J, Glueck B, Obrenovich M, Donskey C, Cresci GAM.},
journal = {JPEN J Parenter Enteral Nutr},
year = {2018},
doi = {10.1002/jpen.1053},
pmid = {29385239}
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@article{lin278671,
title = {Interaction of genotype and diet on small intestine microbiota of Japanese quail fed a cholesterol enriched diet.},
author = {Liu S, Tun HM, Leung FC, Bennett DC, Zhang H, Cheng KM.},
journal = {Sci Rep},
year = {2018},
doi = {10.1038/s41598-018-20508-9},
pmid = {29402949}
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@article{lin278702,
title = {Air-Dried Brown Seaweed, Ascophyllum nodosum, Alters the Rumen Microbiome in a Manner That Changes Rumen Fermentation Profiles and Lowers the Prevalence of Foodborne Pathogens.},
author = {Zhou M, Hunerberg M, Chen Y, Reuter T, McAllister TA, Evans F, Critchley AT, Guan LL.},
journal = {mSphere},
year = {2018},
doi = {10.1128/msphere.00017-18},
pmid = {29404417}
}
@article{lin278472,
title = {In Vitro and In Vivo Activities of DS-2969b, a Novel GyrB Inhibitor, against Clostridium difficile.},
author = {Mathur T, Barman TK, Kumar M, Singh D, Kumar R, Khera MK, Yamada M, Inoue SI, Upadhyay DJ, Masuda N.},
journal = {Antimicrob Agents Chemother},
year = {2018},
doi = {10.1128/aac.02157-17},
pmid = {29439962}
}
@article{lin278540,
title = {Blautia hominis sp. nov., isolated from human faeces.},
author = {Shin NR, Kang W, Tak EJ, Hyun DW, Kim PS, Kim HS, Lee JY, Sung H, Whon TW, Bae JW.},
journal = {Int J Syst Evol Microbiol},
year = {2018},
doi = {10.1099/ijsem.0.002623},
pmid = {29458493}
}
@article{lin278709,
title = {Lactobacillus paracasei CNCM I-3689 reduces vancomycin-resistant Enterococcus persistence and promotes Bacteroidetes resilience in the gut following antibiotic challenge.},
author = {Crouzet L, Derrien M, Cherbuy C, Plancade S, Foulon M, Chalin B, van Hylckama Vlieg JET, Grompone G, Rigottier-Gois L, Serror P.},
journal = {Sci Rep},
year = {2018},
doi = {10.1038/s41598-018-23437-9},
pmid = {29572473}
}
@article{lin278734,
title = {Flavin-Based Electron Bifurcation, Ferredoxin, Flavodoxin, and Anaerobic Respiration With Protons (Ech) or NAD+ (Rnf) as Electron Acceptors: A Historical Review.},
author = {Buckel W, Thauer RK.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.00401},
pmid = {29593673}
}
@article{lin278679,
title = {Fecal microbiota composition changes after a BW loss diet in Beagle dogs.},
author = {Salas-Mani A, Jeusette I, Castillo I, Manuelian CL, Lionnet C, Iraculis N, Sanchez N, Fernandez S, Vilaseca L, Torre C.},
journal = {J Anim Sci},
year = {2018},
doi = {10.1093/jas/sky193},
pmid = {29790949}
}
@article{lin278701,
title = {Taxonomy-aware feature engineering for microbiome classification.},
author = {Oudah M, Henschel A.},
journal = {BMC Bioinformatics},
year = {2018},
doi = {10.1186/s12859-018-2205-3},
pmid = {29907097}
}
@article{lin278697,
title = {Propionate-producing bacteria in the intestine may associate with skewed responses of IL10-producing regulatory T cells in patients with relapsing polychondritis.},
author = {Shimizu J, Kubota T, Takada E, Takai K, Fujiwara N, Arimitsu N, Murayama MA, Ueda Y, Wakisaka S, Suzuki T, Suzuki N.},
journal = {PLoS One},
year = {2018},
doi = {10.1371/journal.pone.0203657},
pmid = {30235279}
}
@article{lin278443,
title = {Akkermansia muciniphila strain ATCC BAA-835 does not promote short-term intestinal inflammation in gnotobiotic interleukin-10-deficient mice.},
author = {Ring C, Klopfleisch R, Dahlke K, Basic M, Bleich A, Blaut M.},
journal = {Gut Microbes},
year = {2019},
doi = {10.1080/19490976.2018.1511663},
pmid = {30252588}
}
@article{lin40206,
title = {Blautia argi sp. nov., a new anaerobic bacterium isolated from dog faeces.},
author = {Paek J, Shin Y, Kook JK, Chang YH},
journal = {Int J Syst Evol Microbiol},
year = {2018},
doi = {10.1099/ijsem.0.002981},
pmid = {30407903}
}
@article{lin278696,
title = {Contribution of Host Genetics to the Variation of Microbial Composition of Cecum Lumen and Feces in Pigs.},
author = {Chen C, Huang X, Fang S, Yang H, He M, Zhao Y, Huang L.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.02626},
pmid = {30429843}
}
@article{lin278710,
title = {In Vivo Effects of Einkorn Wheat (Triticum monococcum) Bread on the Intestinal Microbiota, Metabolome, and on the Glycemic and Insulinemic Response in the Pig Model.},
author = {Barone F, Laghi L, Gianotti A, Ventrella D, Saa DLT, Bordoni A, Forni M, Brigidi P, Bacci ML, Turroni S.},
journal = {Nutrients},
year = {2018},
doi = {10.3390/nu11010016},
pmid = {30577558}
}
@article{lin278699,
title = {Identification of Specific Oral and Gut Pathogens in Full Thickness Colon of Colitis Patients: Implications for Colon Motility.},
author = {Dinakaran V, Mandape SN, Shuba K, Pratap S, Sakhare SS, Tabatabai MA, Smoot DT, Farmer-Dixon CM, Kesavalu LN, Adunyah SE, Southerland JH, Gangula PR.},
journal = {Front Microbiol},
year = {2018},
doi = {10.3389/fmicb.2018.03220},
pmid = {30666239}
}
@article{lin278453,
title = {Clostridium ramosum regulates enterochromaffin cell development and serotonin release.},
author = {Mandic AD, Woting A, Jaenicke T, Sander A, Sabrowski W, Rolle-Kampcyk U, von Bergen M, Blaut M.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-018-38018-z},
pmid = {30718836}
}
@article{lin278666,
title = {Microbial Diversity and Organic Acid Production of Guinea Pig Faecal Samples.},
author = {Palakawong Na Ayudthaya S, van der Oost H, van der Oost J, van Vliet DM, Plugge CM.},
journal = {Curr Microbiol},
year = {2019},
doi = {10.1007/s00284-019-01630-x},
pmid = {30747258}
}
@article{lin278708,
title = {Sialyllactose and Galactooligosaccharides Promote Epithelial Barrier Functioning and Distinctly Modulate Microbiota Composition and Short Chain Fatty Acid Production In Vitro.},
author = {Perdijk O, van Baarlen P, Fernandez-Gutierrez MM, van den Brink E, Schuren FHJ, Brugman S, Savelkoul HFJ, Kleerebezem M, van Neerven RJJ.},
journal = {Front Immunol},
year = {2019},
doi = {10.3389/fimmu.2019.00094},
pmid = {30809221}
}
@article{lin278683,
title = {Factors Explaining Interpersonal Variation in Plasma Enterolactone Concentrations in Humans.},
author = {Halldin E, Eriksen AK, Brunius C, da Silva AB, Bronze M, Hanhineva K, Aura AM, Landberg R.},
journal = {Mol Nutr Food Res},
year = {2019},
doi = {10.1002/mnfr.201801159},
pmid = {30817848}
}
@article{lin278579,
title = {Contact with adult hen affects development of caecal microbiota in newly hatched chicks.},
author = {Kubasova T, Kollarcikova M, Crhanova M, Karasova D, Cejkova D, Sebkova A, Matiasovicova J, Faldynova M, Pokorna A, Cizek A, Rychlik I.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0212446},
pmid = {30840648}
}
@article{lin278457,
title = {The Use of Defined Microbial Communities To Model Host-Microbe Interactions in the Human Gut.},
author = {Elzinga J, van der Oost J, de Vos WM, Smidt H.},
journal = {Microbiol Mol Biol Rev},
year = {2019},
doi = {10.1128/mmbr.00054-18},
pmid = {30867232}
}
@article{lin278632,
title = {H. pylori Eradication Treatment Alters Gut Microbiota and GLP-1 Secretion in Humans.},
author = {Cornejo-Pareja I, Martin-Nunez GM, Roca-Rodriguez MM, Cardona F, Coin-Araguez L, Sanchez-Alcoholado L, Gutierrez-Repiso C, Munoz-Garach A, Fernandez-Garcia JC, Moreno-Indias I, Tinahones FJ.},
journal = {J Clin Med},
year = {2019},
doi = {10.3390/jcm8040451},
pmid = {30987326}
}
@article{lin278630,
title = {Oral Administration of Compound Probiotics Improved Canine Feed Intake, Weight Gain, Immunity and Intestinal Microbiota.},
author = {Xu H, Huang W, Hou Q, Kwok LY, Laga W, Wang Y, Ma H, Sun Z, Zhang H.},
journal = {Front Immunol},
year = {2019},
doi = {10.3389/fimmu.2019.00666},
pmid = {31001271}
}
@article{lin40200,
title = {The 'in vivo lifestyle' of bile acid 7alpha-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice.},
author = {Ridlon JM, Devendran S, Alves JM, Doden H, Wolf PG, Pereira GV, Ly L, Volland A, Takei H, Nittono H, Murai T, Kurosawa T, Chlipala GE, Green SJ, Hernandez AG, Fields CJ, Wright CL, Kakiyama G, Cann I, Kashyap P, McCracken V, Gaskins HR},
journal = {Gut Microbes},
year = {2019},
doi = {10.1080/19490976.2019.1618173},
pmid = {31177942}
}
@article{lin278664,
title = {Novel Inter-omic Analysis Reveals Relationships Between Diverse Gut Microbiota and Host Immune Dysregulation in HLA-B27-Induced Experimental Spondyloarthritis.},
author = {Gill T, Brooks SR, Rosenbaum JT, Asquith M, Colbert RA.},
journal = {Arthritis Rheumatol},
year = {2019},
doi = {10.1002/art.41018},
pmid = {31216122}
}
@article{lin278693,
title = {Antibiotic-induced decreases in the levels of microbial-derived short-chain fatty acids correlate with increased gastrointestinal colonization of Candida albicans.},
author = {Guinan J, Wang S, Hazbun TR, Yadav H, Thangamani S.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-45467-7},
pmid = {31222159}
}
@article{lin278733,
title = {Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom.},
author = {Nowinski B, Smith CB, Thomas CM, Esson K, Marin R, Preston CM, Birch JM, Scholin CA, Huntemann M, Clum A, Foster B, Foster B, Roux S, Palaniappan K, Varghese N, Mukherjee S, Reddy TBK, Daum C, Copeland A, Chen IA, Ivanova NN, Kyrpides NC, Glavina Del Rio T, Whitman WB, Kiene RP, Eloe-Fadrosh EA, Moran MA.},
journal = {Sci Data},
year = {2019},
doi = {10.1038/s41597-019-0132-4},
pmid = {31332186}
}
@article{lin278723,
title = {Novel Probiotic Mechanisms of the Oral Bacterium Streptococcus sp. A12 as Explored with Functional Genomics.},
author = {Lee K, Walker AR, Chakraborty B, Kaspar JR, Nascimento MM, Burne RA.},
journal = {Appl Environ Microbiol},
year = {2019},
doi = {10.1128/aem.01335-19},
pmid = {31420345}
}
@article{lin278605,
title = {Low-calcium diet in mice leads to reduced gut colonization by Enterococcus faecium.},
author = {Top J, Hendrickx APA, van Ampting MTJ, van Limpt K, Knol J, van de Kamer D, Braat JC, Viveen M, Rogers MR, Kemperman H, Willems RJL, Paganelli FL.},
journal = {Microbiologyopen},
year = {2019},
doi = {10.1002/mbo3.936},
pmid = {31568701}
}
@article{lin278652,
title = {Development of the equine gut microbiota.},
author = {Lindenberg F, Krych L, Kot W, Fielden J, Frokiaer H, van Galen G, Nielsen DS, Hansen AK.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-50563-9},
pmid = {31594971}
}
@article{lin278586,
title = {Relating the gut metagenome and metatranscriptome to immunotherapy responses in melanoma patients.},
author = {Peters BA, Wilson M, Moran U, Pavlick A, Izsak A, Wechter T, Weber JS, Osman I, Ahn J.},
journal = {Genome Med},
year = {2019},
doi = {10.1186/s13073-019-0672-4},
pmid = {31597568}
}
@article{lin278719,
title = {Colonizing multidrug-resistant bacteria and the longitudinal evolution of the intestinal microbiome after liver transplantation.},
author = {Annavajhala MK, Gomez-Simmonds A, Macesic N, Sullivan SB, Kress A, Khan SD, Giddins MJ, Stump S, Kim GI, Narain R, Verna EC, Uhlemann AC.},
journal = {Nat Commun},
year = {2019},
doi = {10.1038/s41467-019-12633-4},
pmid = {31624266}
}
@article{lin278700,
title = {Host genetic effects upon the early gut microbiota in a bovine model with graduated spectrum of genetic variation.},
author = {Fan P, Bian B, Teng L, Nelson CD, Driver J, Elzo MA, Jeong KC.},
journal = {ISME J},
year = {2020},
doi = {10.1038/s41396-019-0529-2},
pmid = {31624342}
}
@article{lin278474,
title = {Energy-converting hydrogenases: the link between H2 metabolism and energy conservation.},
author = {Schoelmerich MC, Muller V.},
journal = {Cell Mol Life Sci},
year = {2020},
doi = {10.1007/s00018-019-03329-5},
pmid = {31630229}
}
@article{lin278691,
title = {The Simplified Human Intestinal Microbiota (SIHUMIx) Shows High Structural and Functional Resistance against Changing Transit Times in In Vitro Bioreactors.},
author = {Schape SS, Krause JL, Engelmann B, Fritz-Wallace K, Schattenberg F, Liu Z, Muller S, Jehmlich N, Rolle-Kampczyk U, Herberth G, von Bergen M.},
journal = {Microorganisms},
year = {2019},
doi = {10.3390/microorganisms7120641},
pmid = {31816881}
}
@article{lin278716,
title = {Intestinal Flora Disruption and Novel Biomarkers Associated With Nasopharyngeal Carcinoma.},
author = {Jiang H, Li J, Zhang B, Huang R, Zhang J, Chen Z, Shang X, Li X, Nie X.},
journal = {Front Oncol},
year = {2019},
doi = {10.3389/fonc.2019.01346},
pmid = {31867274}
}
@article{lin278713,
title = {Comparison of Japanese and Indian intestinal microbiota shows diet-dependent interaction between bacteria and fungi.},
author = {Pareek S, Kurakawa T, Das B, Motooka D, Nakaya S, Rongsen-Chandola T, Goyal N, Kayama H, Dodd D, Okumura R, Maeda Y, Fujimoto K, Nii T, Ogawa T, Iida T, Bhandari N, Kida T, Nakamura S, Nair GB, Takeda K.},
journal = {NPJ Biofilms Microbiomes},
year = {2019},
doi = {10.1038/s41522-019-0110-9},
pmid = {31885873}
}
@article{lin278678,
title = {Following the community development of SIHUMIx - a new intestinal in vitro model for bioreactor use.},
author = {Krause JL, Schaepe SS, Fritz-Wallace K, Engelmann B, Rolle-Kampczyk U, Kleinsteuber S, Schattenberg F, Liu Z, Mueller S, Jehmlich N, Von Bergen M, Herberth G.},
journal = {Gut Microbes},
year = {2020},
doi = {10.1080/19490976.2019.1702431},
pmid = {31918607}
}
@article{lin278452,
title = {Growth effects of N-acylethanolamines on gut bacteria reflect altered bacterial abundances in inflammatory bowel disease.},
author = {Fornelos N, Franzosa EA, Bishai J, Annand JW, Oka A, Lloyd-Price J, Arthur TD, Garner A, Avila-Pacheco J, Haiser HJ, Tolonen AC, Porter JA, Clish CB, Sartor RB, Huttenhower C, Vlamakis H, Xavier RJ.},
journal = {Nat Microbiol},
year = {2020},
doi = {10.1038/s41564-019-0655-7},
pmid = {31959971}
}
@article{lin278668,
title = {Metabolomics reveals impact of seven functional foods on metabolic pathways in a gut microbiota model.},
author = {Farag MA, Abdelwareth A, Sallam IE, El Shorbagi M, Jehmlich N, Fritz-Wallace K, Serena Schape S, Rolle-Kampczyk U, Ehrlich A, Wessjohann LA, von Bergen M.},
journal = {J Adv Res},
year = {2020},
doi = {10.1016/j.jare.2020.01.001},
pmid = {32071791}
}
@article{lin40199,
title = {Blautia faecicola sp. nov., isolated from faeces from a healthy human.},
author = {Kim JS, Park JE, Lee KC, Choi SH, Oh BS, Yu SY, Eom MK, Kang SW, Han KI, Suh MK, Lee DH, Yoon H, Kim BY, Yang SJ, Lee JH, Lee JS, Park SH},
journal = {Int J Syst Evol Microbiol},
year = {2020},
doi = {10.1099/ijsem.0.004015},
pmid = {32100703}
}
@article{lin278613,
title = {MICROBIOTA INSIGHTS IN CLOSTRIDIUM DIFFICILE INFECTION AND INFLAMMATORY BOWEL DISEASE.},
author = {Rodriguez C, Romero E, Garrido-Sanchez L, Alcain-Martinez G, Andrade RJ, Taminiau B, Daube G, Garcia-Fuentes E.},
journal = {Gut Microbes},
year = {2020},
doi = {10.1080/19490976.2020.1725220},
pmid = {32129694}
}
@article{lin278653,
title = {Changes in the Intestinal Microbiota Are Seen Following Treatment with Infliximab in Children with Crohn's Disease.},
author = {Kowalska-Duplaga K, Kapusta P, Gosiewski T, Sroka-Oleksiak A, Ludwig-Slomczynska AH, Wolkow PP, Fyderek K.},
journal = {J Clin Med},
year = {2020},
doi = {10.3390/jcm9030687},
pmid = {32143438}
}
@article{lin278736,
title = {Adjusting for age improves identification of gut microbiome alterations in multiple diseases.},
author = {Ghosh TS, Das M, Jeffery IB, O'Toole PW.},
journal = {Elife},
year = {2020},
doi = {10.7554/elife.50240},
pmid = {32159510}
}
@article{lin278623,
title = {Effects of Alternative Administration Programs of a Synbiotic Supplement on Broiler Performance, Foot Pad Dermatitis, Caecal Microbiota, and Blood Metabolites.},
author = {Brugaletta G, De Cesare A, Zampiga M, Laghi L, Oliveri C, Zhu C, Manfreda G, Syed B, Valenzuela L, Sirri F.},
journal = {Animals (Basel)},
year = {2020},
doi = {10.3390/ani10030522},
pmid = {32245036}
}
@article{lin40205,
title = {Complete Genome Sequence of Blautia producta JCM 1471(T).},
author = {Tourlousse DM, Sakamoto M, Miura T, Narita K, Ohashi A, Uchino Y, Yamazoe A, Kameyama K, Terauchi J, Ohkuma M, Kawasaki H, Sekiguchi Y},
journal = {Microbiol Resour Announc},
year = {2020},
doi = {10.1128/MRA.00141-20},
pmid = {32327523}
}
@article{lin278454,
title = {The Activation of Mucosal-Associated Invariant T (MAIT) Cells Is Affected by Microbial Diversity and Riboflavin Utilization in vitro.},
author = {Krause JL, Schape SS, Schattenberg F, Muller S, Ackermann G, Rolle-Kampczyk UE, Jehmlich N, Pierzchalski A, von Bergen M, Herberth G.},
journal = {Front Microbiol},
year = {2020},
doi = {10.3389/fmicb.2020.00755},
pmid = {32390989}
}
@article{lin278660,
title = {Synergistic depletion of gut microbial consortia, but not individual antibiotics, reduces amyloidosis in APPPS1-21 Alzheimer's transgenic mice.},
author = {Dodiya HB, Frith M, Sidebottom A, Cao Y, Koval J, Chang E, Sisodia SS.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-64797-5},
pmid = {32424118}
}
@article{lin278658,
title = {Ergothioneine, a metabolite of the gut bacterium Lactobacillus reuteri, protects against stress-induced sleep disturbances.},
author = {Matsuda Y, Ozawa N, Shinozaki T, Wakabayashi KI, Suzuki K, Kawano Y, Ohtsu I, Tatebayashi Y.},
journal = {Transl Psychiatry},
year = {2020},
doi = {10.1038/s41398-020-0855-1},
pmid = {32467627}
}
@article{lin278659,
title = {Lactulose Suppresses Osteoclastogenesis and Ameliorates Estrogen Deficiency-Induced Bone Loss in Mice.},
author = {Chen X, Zhang Z, Hu Y, Cui J, Zhi X, Li X, Jiang H, Wang Y, Gu Z, Qiu Z, Dong X, Li Y, Su J.},
journal = {Aging Dis},
year = {2020},
doi = {10.14336/ad.2019.0613},
pmid = {32489707}
}
@article{lin278625,
title = {Differentially Abundant Bacterial Taxa Associated with Prognostic Variables of Crohn's Disease: Results from the IMPACT Study.},
author = {Park SK, Kim HN, Choi CH, Im JP, Cha JM, Eun CS, Kim TO, Kang SB, Bang KB, Kim HG, Jung Y, Yoon H, Han DS, Lee CW, Ahn K, Kim HL, Park DI.},
journal = {J Clin Med},
year = {2020},
doi = {10.3390/jcm9061748},
pmid = {32516912}
}
@article{lin278656,
title = {Prediction of advanced fibrosis in non-alcoholic fatty liver disease using gut microbiota-based approaches compared with simple non-invasive tools.},
author = {Lang S, Farowski F, Martin A, Wisplinghoff H, Vehreschild MJGT, Krawczyk M, Nowag A, Kretzschmar A, Scholz C, Kasper P, Roderburg C, Lammert F, Goeser T, Steffen HM, Demir M.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-66241-0},
pmid = {32523101}
}
@article{lin278591,
title = {Call to Action: How to Tackle Emerging Nosocomial Fungal Infections.},
author = {Lionakis MS, Hohl TM.},
journal = {Cell Host Microbe},
year = {2020},
doi = {10.1016/j.chom.2020.04.011},
pmid = {32526182}
}
@article{lin278686,
title = {Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study.},
author = {Clooney AG, Eckenberger J, Laserna-Mendieta E, Sexton KA, Bernstein MT, Vagianos K, Sargent M, Ryan FJ, Moran C, Sheehan D, Sleator RD, Targownik LE, Bernstein CN, Shanahan F, Claesson MJ.},
journal = {Gut},
year = {2021},
doi = {10.1136/gutjnl-2020-321106},
pmid = {32536605}
}
@article{lin278612,
title = {Minority report: the intestinal mycobiota in systemic infections.},
author = {Rolling T, Hohl TM, Zhai B.},
journal = {Curr Opin Microbiol},
year = {2020},
doi = {10.1016/j.mib.2020.05.004},
pmid = {32599521}
}
@article{lin278642,
title = {Developmental exposure of California mice to endocrine disrupting chemicals and potential effects on the microbiome-gut-brain axis at adulthood.},
author = {Kaur S, Sarma SJ, Marshall BL, Liu Y, Kinkade JA, Bellamy MM, Mao J, Helferich WG, Schenk AK, Bivens NJ, Lei Z, Sumner LW, Bowden JA, Koelmel JP, Joshi T, Rosenfeld CS.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-67709-9},
pmid = {32616744}
}
@article{lin278690,
title = {Frozen Autoclaved Sorghum Enhanced Colonic Fermentation and Lower Visceral Fat Accumulation in Rats.},
author = {Pelpolage SW, Yoshida A, Nagata R, Shimada K, Fukuma N, Bochimoto H, Hamamoto T, Hoshizawa M, Nakano K, Han KH, Fukushima M.},
journal = {Nutrients},
year = {2020},
doi = {10.3390/nu12082412},
pmid = {32806549}
}
@article{lin278704,
title = {Microbe-Metabolite Associations Linked to the Rebounding Murine Gut Microbiome Postcolonization with Vancomycin-Resistant Enterococcus faecium.},
author = {Mu A, Carter GP, Li L, Isles NS, Vrbanac AF, Morton JT, Jarmusch AK, De Souza DP, Narayana VK, Kanojia K, Nijagal B, McConville MJ, Knight R, Howden BP, Stinear TP.},
journal = {mSystems},
year = {2020},
doi = {10.1128/msystems.00452-20},
pmid = {32817384}
}
@article{lin278449,
title = {The Sporomusa type Nfn is a novel type of electron-bifurcating transhydrogenase that links the redox pools in acetogenic bacteria.},
author = {Kremp F, Roth J, Muller V.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-71038-2},
pmid = {32913242}
}
@article{lin278670,
title = {Environmentally Relevant Concentration of Bisphenol S Shows Slight Effects on SIHUMIx.},
author = {Schape SS, Krause JL, Masanetz RK, Riesbeck S, Starke R, Rolle-Kampczyk U, Eberlein C, Heipieper HJ, Herberth G, von Bergen M, Jehmlich N.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8091436},
pmid = {32961728}
}
@article{lin278661,
title = {Protective effects of PX478 on gut barrier in a mouse model of ethanol and burn injury.},
author = {Morris NL, Cannon AR, Li X, Choudhry MA.},
journal = {J Leukoc Biol},
year = {2021},
doi = {10.1002/jlb.3a0820-323rr},
pmid = {32964503}
}
@article{lin278574,
title = {Prospective associations of the infant gut microbiome and microbial function with social behaviors related to autism at age 3 years.},
author = {Laue HE, Korrick SA, Baker ER, Karagas MR, Madan JC.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-72386-9},
pmid = {32968156}
}
@article{lin278559,
title = {Fecal Microbiota Transplant in Two Ulcerative Colitis Pediatric Cases: Gut Microbiota and Clinical Course Correlations.},
author = {Quagliariello A, Del Chierico F, Reddel S, Russo A, Onetti Muda A, D'Argenio P, Angelino G, Romeo EF, Dall'Oglio L, De Angelis P, Putignani L, All The Other Fmt Opbg Committee Collaborators.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8101486},
pmid = {32992653}
}
@article{lin278648,
title = {The Central Role of Interbacterial Antagonism in Bacterial Life.},
author = {Peterson SB, Bertolli SK, Mougous JD.},
journal = {Curr Biol},
year = {2020},
doi = {10.1016/j.cub.2020.06.103},
pmid = {33022265}
}
@article{lin278644,
title = {A compromised developmental trajectory of the infant gut microbiome and metabolome in atopic eczema.},
author = {Ta LDH, Chan JCY, Yap GC, Purbojati RW, Drautz-Moses DI, Koh YM, Tay CJX, Huang CH, Kioh DYQ, Woon JY, Tham EH, Loo EXL, Shek LPC, Karnani N, Goh A, Van Bever HPS, Teoh OH, Chan YH, Lay C, Knol J, Yap F, Tan KH, Chong YS, Godfrey KM, Kjelleberg S, Schuster SC, Chan ECY, Lee BW.},
journal = {Gut Microbes},
year = {2020},
doi = {10.1080/19490976.2020.1801964},
pmid = {33023370}
}
@article{lin278479,
title = {Linear and branched beta-Glucans degrading enzymes from versatile Bacteroides uniformis JCM 13288T and their roles in cooperation with gut bacteria.},
author = {Singh RP, Rajarammohan S, Thakur R, Hassan M.},
journal = {Gut Microbes},
year = {2020},
doi = {10.1080/19490976.2020.1826761},
pmid = {33043794}
}
@article{lin278583,
title = {Association of Moderate Beer Consumption with the Gut Microbiota and SCFA of Healthy Adults.},
author = {Gonzalez-Zancada N, Redondo-Useros N, Diaz LE, Gomez-Martinez S, Marcos A, Nova E.},
journal = {Molecules},
year = {2020},
doi = {10.3390/molecules25204772},
pmid = {33080809}
}
@article{lin278717,
title = {In Vitro and In Vivo Models for Evaluating the Oral Toxicity of Nanomedicines.},
author = {Lama S, Merlin-Zhang O, Yang C.},
journal = {Nanomaterials (Basel)},
year = {2020},
doi = {10.3390/nano10112177},
pmid = {33142878}
}
@article{lin278541,
title = {Refocusing Human Microbiota Research in Infectious and Immune-mediated Diseases: Advancing to the Next Stage.},
author = {Giovanni MY, Schneider JS, Calder T, Fauci AS.},
journal = {J Infect Dis},
year = {2021},
doi = {10.1093/infdis/jiaa706},
pmid = {33188418}
}
@article{lin278677,
title = {A Novel Role of SLC26A3 in the Maintenance of Intestinal Epithelial Barrier Integrity.},
author = {Kumar A, Priyamvada S, Ge Y, Jayawardena D, Singhal M, Anbazhagan AN, Chatterjee I, Dayal A, Patel M, Zadeh K, Saksena S, Alrefai WA, Gill RK, Zadeh M, Zhao N, Mohamadzadeh M, Dudeja PK.},
journal = {Gastroenterology},
year = {2021},
doi = {10.1053/j.gastro.2020.11.008},
pmid = {33189700}
}
@article{lin278466,
title = {Prophages are associated with extensive CRISPR-Cas auto-immunity.},
author = {Nobrega FL, Walinga H, Dutilh BE, Brouns SJJ.},
journal = {Nucleic Acids Res},
year = {2020},
doi = {10.1093/nar/gkaa1071},
pmid = {33219687}
}
@article{lin278735,
title = {A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity.},
author = {Wylensek D, Hitch TCA, Riedel T, Afrizal A, Kumar N, Wortmann E, Liu T, Devendran S, Lesker TR, Hernandez SB, Heine V, Buhl EM, M D'Agostino P, Cumbo F, Fischoder T, Wyschkon M, Looft T, Parreira VR, Abt B, Doden HL, Ly L, Alves JMP, Reichlin M, Flisikowski K, Suarez LN, Neumann AP, Suen G, de Wouters T, Rohn S, Lagkouvardos I, Allen-Vercoe E, Sproer C, Bunk B, Taverne-Thiele AJ, Giesbers M, Wells JM, Neuhaus K, Schnieke A, Cava F, Segata N, Elling L, Strowig T, Ridlon JM, Gulder TAM, Overmann J, Clavel T.},
journal = {Nat Commun},
year = {2020},
doi = {10.1038/s41467-020-19929-w},
pmid = {33319778}
}
@article{lin278688,
title = {Gut Microbiota and Metabolic Specificity in Ulcerative Colitis and Crohn's Disease.},
author = {Sankarasubramanian J, Ahmad R, Avuthu N, Singh AB, Guda C.},
journal = {Front Med (Lausanne)},
year = {2020},
doi = {10.3389/fmed.2020.606298},
pmid = {33330572}
}
@article{lin278469,
title = {Berberine alters gut microbial function through modulation of bile acids.},
author = {Wolf PG, Devendran S, Doden HL, Ly LK, Moore T, Takei H, Nittono H, Murai T, Kurosawa T, Chlipala GE, Green SJ, Kakiyama G, Kashyap P, McCracken VJ, Gaskins HR, Gillevet PM, Ridlon JM.},
journal = {BMC Microbiol},
year = {2021},
doi = {10.1186/s12866-020-02020-1},
pmid = {33430766}
}
@article{lin278468,
title = {Blautia-a new functional genus with potential probiotic properties?},
author = {Liu X, Mao B, Gu J, Wu J, Cui S, Wang G, Zhao J, Zhang H, Chen W.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1875796},
pmid = {33525961}
}
@article{lin278615,
title = {Rapid transcriptional and metabolic adaptation of intestinal microbes to host immune activation.},
author = {Becattini S, Sorbara MT, Kim SG, Littmann EL, Dong Q, Walsh G, Wright R, Amoretti L, Fontana E, Hohl TM, Pamer EG.},
journal = {Cell Host Microbe},
year = {2021},
doi = {10.1016/j.chom.2021.01.003},
pmid = {33539766}
}
@article{lin278687,
title = {Effects of Banana Resistant Starch on the Biochemical Indexes and Intestinal Flora of Obese Rats Induced by a High-Fat Diet and Their Correlation Analysis.},
author = {Fu J, Wang Y, Tan S, Wang J.},
journal = {Front Bioeng Biotechnol},
year = {2021},
doi = {10.3389/fbioe.2021.575724},
pmid = {33585429}
}
@article{lin278705,
title = {Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome.},
author = {Petruschke H, Schori C, Canzler S, Riesbeck S, Poehlein A, Daniel R, Frei D, Segessemann T, Zimmerman J, Marinos G, Kaleta C, Jehmlich N, Ahrens CH, von Bergen M.},
journal = {Microbiome},
year = {2021},
doi = {10.1186/s40168-020-00981-z},
pmid = {33622394}
}
@article{lin278620,
title = {Correlation Analysis between GDM and Gut Microbial Composition in Late Pregnancy.},
author = {Li G, Yin P, Chu S, Gao W, Cui S, Guo S, Xu Y, Yuan E, Zhu T, You J, Zhang J, Yang M.},
journal = {J Diabetes Res},
year = {2021},
doi = {10.1155/2021/8892849},
pmid = {33628840}
}
@article{lin278692,
title = {Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis.},
author = {Plichta DR, Somani J, Pichaud M, Wallace ZS, Fernandes AD, Perugino CA, Lahdesmaki H, Stone JH, Vlamakis H, Chung DC, Khanna D, Pillai S, Xavier RJ.},
journal = {Genome Med},
year = {2021},
doi = {10.1186/s13073-021-00853-7},
pmid = {33648559}
}
@article{lin278703,
title = {Evolution of combinatorial diversity in trans-acyltransferase polyketide synthase assembly lines across bacteria.},
author = {Helfrich EJN, Ueoka R, Ueoka R, Chevrette MG, Hemmerling F, Lu X, Leopold-Messer S, Minas HA, Burch AY, Lindow SE, Piel J, Medema MH.},
journal = {Nat Commun},
year = {2021},
doi = {10.1038/s41467-021-21163-x},
pmid = {33658492}
}
@article{lin278519,
title = {Intracellular Microbiome Profiling of the Acanthamoeba Clinical Isolates from Lens Associated Keratitis.},
author = {Wang YJ, Li SC, Lin WC, Huang FC.},
journal = {Pathogens},
year = {2021},
doi = {10.3390/pathogens10030266},
pmid = {33669045}
}
@article{lin278616,
title = {Gut Microbiota Signatures in Gestational Anemia.},
author = {Long Y, Liang F, Guo R, Zhu C, Zhao X, Wang X, Liu F, Jiang M, Liang Q, Zeng S, Han M, Qin J, Li S, Li S, Yang H.},
journal = {Front Cell Infect Microbiol},
year = {2021},
doi = {10.3389/fcimb.2021.549678},
pmid = {33718259}
}
@article{lin278631,
title = {Using high-abundance proteins as guides for fast and effective peptide/protein identification from human gut metaproteomic data.},
author = {Stamboulian M, Li S, Ye Y.},
journal = {Microbiome},
year = {2021},
doi = {10.1186/s40168-021-01035-8},
pmid = {33795009}
}
@article{lin278639,
title = {Enterolignan Production in a Flaxseed Intervention Study in Postmenopausal US Women of African Ancestry and European Ancestry.},
author = {McCann SE, Hullar MAJ, Tritchler DL, Cortes-Gomez E, Yao S, Davis W, O'Connor T, Erwin D, Thompson LU, Yan L, Lampe JW.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13030919},
pmid = {33809130}
}
@article{lin278655,
title = {Comparison of Argentinean microbiota with other geographical populations reveals different taxonomic and functional signatures associated with obesity.},
author = {Pesoa SA, Portela N, Fernandez E, Elbarcha O, Gotteland M, Magne F.},
journal = {Sci Rep},
year = {2021},
doi = {10.1038/s41598-021-87365-x},
pmid = {33833357}
}
@article{lin278646,
title = {Gut Dysbiosis and Its Associations with Gut Microbiota-Derived Metabolites in Dogs with Myxomatous Mitral Valve Disease.},
author = {Li Q, Larouche-Lebel E, Loughran KA, Huh TP, Suchodolski JS, Oyama MA.},
journal = {mSystems},
year = {2021},
doi = {10.1128/msystems.00111-21},
pmid = {33879495}
}
@article{lin40204,
title = {A Comprehensive Assessment of the Safety of Blautia producta DSM 2950.},
author = {Liu X, Guo W, Cui S, Tang X, Zhao J, Zhang H, Mao B, Chen W},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9050908},
pmid = {33922843}
}
@article{lin278439,
title = {Insights on the Evolutionary Genomics of the Blautia Genus: Potential New Species and Genetic Content Among Lineages.},
author = {Maturana JL, Cardenas JP.},
journal = {Front Microbiol},
year = {2021},
doi = {10.3389/fmicb.2021.660920},
pmid = {33981291}
}
@article{lin278503,
title = {Dynamic metabolic modelling predicts efficient acetogen-gut bacterium cocultures for CO-to-butyrate conversion.},
author = {Li X, Henson MA.},
journal = {J Appl Microbiol},
year = {2021},
doi = {10.1111/jam.15155},
pmid = {34008274}
}
@article{lin278600,
title = {Effect of Microbial Status on Hepatic Odd-Chain Fatty Acids Is Diet-Dependent.},
author = {Weitkunat K, Bishop CA, Wittmuss M, Machate T, Schifelbein T, Schulze MB, Klaus S.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13051546},
pmid = {34064336}
}
@article{lin278442,
title = {Effect of the standard herbal preparation, STW5, treatment on dysbiosis induced by dextran sodium sulfate in experimental colitis.},
author = {Mohamed SS, Abdeltawab NF, Wadie W, Ahmed LA, Ammar RM, Rabini S, Abdel-Aziz H, Khayyal MT.},
journal = {BMC Complement Med Ther},
year = {2021},
doi = {10.1186/s12906-021-03337-8},
pmid = {34103031}
}
@article{lin278571,
title = {The microbial and host factors that govern Candida gastrointestinal colonization and dissemination.},
author = {Mishra AA, Koh AY.},
journal = {Curr Opin Microbiol},
year = {2021},
doi = {10.1016/j.mib.2021.05.012},
pmid = {34111679}
}
@article{lin278711,
title = {Probiotics impact the antibiotic resistance gene reservoir along the human GI tract in a person-specific and antibiotic-dependent manner.},
author = {Montassier E, Valdes-Mas R, Batard E, Zmora N, Dori-Bachash M, Suez J, Elinav E.},
journal = {Nat Microbiol},
year = {2021},
doi = {10.1038/s41564-021-00920-0},
pmid = {34226711}
}
@article{lin278722,
title = {Maternal cecal microbiota transfer rescues early-life antibiotic-induced enhancement of type 1 diabetes in mice.},
author = {Zhang XS, Yin YS, Wang J, Battaglia T, Krautkramer K, Li WV, Li J, Brown M, Zhang M, Badri MH, Armstrong AJS, Strauch CM, Wang Z, Nemet I, Altomare N, Devlin JC, He L, Morton JT, Chalk JA, Needles K, Liao V, Mount J, Li H, Ruggles KV, Bonneau RA, Dominguez-Bello MG, Backhed F, Hazen SL, Blaser MJ.},
journal = {Cell Host Microbe},
year = {2021},
doi = {10.1016/j.chom.2021.06.014},
pmid = {34289377}
}
@article{lin278636,
title = {Novel genomic islands and a new vanD-subtype in the first sporadic VanD-type vancomycin resistant enterococci in Norway.},
author = {Al Rubaye MTS, Janice J, Bjornholt JV, Jakovljev A, Hultstrom ME, Sundsfjord A, Hegstad K.},
journal = {PLoS One},
year = {2021},
doi = {10.1371/journal.pone.0255187},
pmid = {34297779}
}
@article{lin278556,
title = {Eggshell and Feed Microbiota Do Not Represent Major Sources of Gut Anaerobes for Chickens in Commercial Production.},
author = {Volf J, Crhanova M, Karasova D, Faldynova M, Kubasova T, Seidlerova Z, Sebkova A, Zeman M, Juricova H, Matiasovicova J, Foltyn M, Tvrdon Z, Rychlik I.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9071480},
pmid = {34361916}
}
@article{lin278595,
title = {A double-blind, 377-subject randomized study identifies Ruminococcus, Coprococcus, Christensenella, and Collinsella as long-term potential key players in the modulation of the gut microbiome of lactose intolerant individuals by galacto-oligosaccharides.},
author = {Azcarate-Peril MA, Roach J, Marsh A, Chey WD, Sandborn WJ, Ritter AJ, Savaiano DA, Klaenhammer TR.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1957536},
pmid = {34365905}
}
@article{lin278672,
title = {Imaging the in vivo growth patterns of bacteria in human gut Microbiota.},
author = {Lin L, Song J, Li J, Zuo X, Wei H, Yang C, Wang W.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1960134},
pmid = {34428120}
}
@article{lin278440,
title = {Energy conservation under extreme energy limitation: the role of cytochromes and quinones in acetogenic bacteria.},
author = {Rosenbaum FP, Muller V.},
journal = {Extremophiles},
year = {2021},
doi = {10.1007/s00792-021-01241-0},
pmid = {34480656}
}
@article{lin278654,
title = {Identification of Clinical Isolates of Candida albicans with Increased Fitness in Colonization of the Murine Gut.},
author = {Alonso-Monge R, Prieto D, Coman I, Rochas S, Arana DM, Hidalgo-Vico S, Roman E, Pla J.},
journal = {J Fungi (Basel)},
year = {2021},
doi = {10.3390/jof7090695},
pmid = {34575733}
}
@article{lin278643,
title = {Transferable Immunoglobulin A-Coated Odoribacter splanchnicus in Responders to Fecal Microbiota Transplantation for Ulcerative Colitis Limits Colonic Inflammation.},
author = {Lima SF, Gogokhia L, Viladomiu M, Chou L, Putzel G, Jin WB, Pires S, Guo CJ, Gerardin Y, Crawford CV, Jacob V, Scherl E, Brown SE, Hambor J, Longman RS.},
journal = {Gastroenterology},
year = {2022},
doi = {10.1053/j.gastro.2021.09.061},
pmid = {34606847}
}
@article{lin278473,
title = {A selective antibiotic for Lyme disease.},
author = {Leimer N, Wu X, Imai Y, Morrissette M, Pitt N, Favre-Godal Q, Iinishi A, Jain S, Caboni M, Leus IV, Bonifay V, Niles S, Bargabos R, Ghiglieri M, Corsetti R, Krumpoch M, Fox G, Son S, Klepacki D, Polikanov YS, Freliech CA, McCarthy JE, Edmondson DG, Norris SJ, D'Onofrio A, Hu LT, Zgurskaya HI, Lewis K.},
journal = {Cell},
year = {2021},
doi = {10.1016/j.cell.2021.09.011},
pmid = {34619078}
}
@article{lin278573,
title = {The Gut Microbiome and Cancer Immunotherapy: Can We Use the Gut Microbiome as a Predictive Biomarker for Clinical Response in Cancer Immunotherapy?},
author = {Oh B, Boyle F, Pavlakis N, Clarke S, Eade T, Hruby G, Lamoury G, Carroll S, Morgia M, Kneebone A, Stevens M, Liu W, Corless B, Molloy M, Kong B, Libermann T, Rosenthal D, Back M.},
journal = {Cancers (Basel)},
year = {2021},
doi = {10.3390/cancers13194824},
pmid = {34638308}
}
@article{lin278552,
title = {FluCell-SELEX Aptamers as Specific Binding Molecules for Diagnostics of the Health Relevant Gut Bacterium Akkermansia muciniphila.},
author = {Raber HF, Kubiczek DH, Bodenberger N, Kissmann AK, D'souza D, Xing H, Mayer D, Xu P, Knippschild U, Spellerberg B, Weil T, Rosenau F.},
journal = {Int J Mol Sci},
year = {2021},
doi = {10.3390/ijms221910425},
pmid = {34638764}
}
@article{lin278626,
title = {Enterococcus spp. as a Producer and Target of Bacteriocins: A Double-Edged Sword in the Antimicrobial Resistance Crisis Context.},
author = {Almeida-Santos AC, Novais C, Peixe L, Freitas AR.},
journal = {Antibiotics (Basel)},
year = {2021},
doi = {10.3390/antibiotics10101215},
pmid = {34680796}
}
@article{lin278597,
title = {The Possible Role of Bifidobacterium longum BB536 and Lactobacillus rhamnosus HN001 on Locomotor Activity and Oxidative Stress in a Rotenone-Induced Zebrafish Model of Parkinson's Disease.},
author = {Ilie OD, Paduraru E, Robea MA, Balmus IM, Jijie R, Nicoara M, Ciobica A, Nita IB, Dobrin R, Doroftei B.},
journal = {Oxid Med Cell Longev},
year = {2021},
doi = {10.1155/2021/9629102},
pmid = {34691361}
}
@article{lin278706,
title = {An integrative understanding of the large metabolic shifts induced by antibiotics in critical illness.},
author = {Marfil-Sanchez A, Zhang L, Alonso-Pernas P, Mirhakkak M, Mueller M, Seelbinder B, Ni Y, Santhanam R, Busch A, Beemelmanns C, Ermolaeva M, Bauer M, Panagiotou G.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1993598},
pmid = {34793277}
}
@article{lin278582,
title = {Polyclonal Aptamers for Specific Fluorescence Labeling and Quantification of the Health Relevant Human Gut Bacterium Parabacteroides distasonis.},
author = {Xing H, Kissmann AK, Raber HF, Kramer M, Amann V, Kohn K, Weil T, Rosenau F.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9112284},
pmid = {34835410}
}
@article{lin278504,
title = {Gut microbiota of patients with type 2 diabetes and gastrointestinal intolerance to metformin differs in composition and functionality from tolerant patients.},
author = {Diaz-Perdigones CM, Munoz-Garach A, Alvarez-Bermudez MD, Moreno-Indias I, Tinahones FJ.},
journal = {Biomed Pharmacother},
year = {2022},
doi = {10.1016/j.biopha.2021.112448},
pmid = {34844104}
}
@article{lin278663,
title = {Nutraceuticals and Herbal Food Supplements for Weight Loss: Is There a Prebiotic Role in the Mechanism of Action?},
author = {Bertuccioli A, Cardinali M, Biagi M, Moricoli S, Morganti I, Zonzini GB, Rigillo G.},
journal = {Microorganisms},
year = {2021},
doi = {10.3390/microorganisms9122427},
pmid = {34946029}
}
@article{lin278564,
title = {Elucidation of host diversity of the VanD-carrying genomic islands in enterococci and anaerobes.},
author = {Hashimoto Y, Hisatsune J, Suzuki M, Kurushima J, Nomura T, Hirakawa H, Kojima N, Ono Y, Hasegawa Y, Tanimoto K, Sugai M, Tomita H.},
journal = {JAC Antimicrob Resist},
year = {2022},
doi = {10.1093/jacamr/dlab189},
pmid = {34993479}
}
@article{lin278561,
title = {The Relationship Between Gut Microbiome Features and Chemotherapy Response in Gastrointestinal Cancer.},
author = {Li N, Bai C, Zhao L, Sun Z, Ge Y, Li X.},
journal = {Front Oncol},
year = {2021},
doi = {10.3389/fonc.2021.781697},
pmid = {35004303}
}
@article{lin278441,
title = {An oxidation resistant pediocin PA-1 derivative and penocin A display effective anti-Listeria activity in a model human gut environment.},
author = {Kuniyoshi TM, O'Connor PM, Lawton E, Thapa D, Mesa-Pereira B, Abulu S, Hill C, Ross RP, Oliveira RPS, Cotter PD.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2021.2004071},
pmid = {35104196}
}
@article{lin278560,
title = {A specific microbiota signature is associated to various degrees of ulcerative colitis as assessed by a machine learning approach.},
author = {Barberio B, Facchin S, Patuzzi I, Ford AC, Massimi D, Valle G, Sattin E, Simionati B, Bertazzo E, Zingone F, Savarino EV.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2022.2028366},
pmid = {35129058}
}
@article{lin278684,
title = {Meta-analysis defines predominant shared microbial responses in various diseases and a specific inflammatory bowel disease signal.},
author = {Abbas-Egbariya H, Haberman Y, Braun T, Hadar R, Denson L, Gal-Mor O, Amir A.},
journal = {Genome Biol},
year = {2022},
doi = {10.1186/s13059-022-02637-7},
pmid = {35197084}
}
@article{lin278673,
title = {Probiotics in the Intensive Care Unit.},
author = {Schuurman AR, Kullberg RFJ, Wiersinga WJ.},
journal = {Antibiotics (Basel)},
year = {2022},
doi = {10.3390/antibiotics11020217},
pmid = {35203819}
}
@article{lin278511,
title = {Two Blautia Species Associated with Visceral Fat Accumulation: A One-Year Longitudinal Study.},
author = {Ozato N, Yamaguchi T, Mori K, Katashima M, Kumagai M, Murashita K, Katsuragi Y, Tamada Y, Kakuta M, Imoto S, Ihara K, Nakaji S.},
journal = {Biology (Basel)},
year = {2022},
doi = {10.3390/biology11020318},
pmid = {35205184}
}
@article{lin278712,
title = {Intestinal microbiota signatures of clinical response and immune-related adverse events in melanoma patients treated with anti-PD-1.},
author = {McCulloch JA, Davar D, Rodrigues RR, Badger JH, Fang JR, Cole AM, Balaji AK, Vetizou M, Prescott SM, Fernandes MR, Costa RGF, Yuan W, Salcedo R, Bahadiroglu E, Roy S, DeBlasio RN, Morrison RM, Chauvin JM, Ding Q, Zidi B, Lowin A, Chakka S, Gao W, Pagliano O, Ernst SJ, Rose A, Newman NK, Morgun A, Zarour HM, Trinchieri G, Dzutsev AK.},
journal = {Nat Med},
year = {2022},
doi = {10.1038/s41591-022-01698-2},
pmid = {35228752}
}
@article{lin278608,
title = {Metagenomics reveals differences in microbial composition and metabolic functions in the rumen of dairy cows with different residual feed intake.},
author = {Xie Y, Sun H, Xue M, Liu J.},
journal = {Anim Microbiome},
year = {2022},
doi = {10.1186/s42523-022-00170-3},
pmid = {35260198}
}
@article{lin278682,
title = {Effects of the Water Extract of Fermented Rice Bran on Liver Damage and Intestinal Injury in Aged Rats with High-Fat Diet Feeding.},
author = {Chen TY, Chen YL, Chiu WC, Yeh CL, Tung YT, Shirakawa H, Liao WT, Yang SC.},
journal = {Plants (Basel)},
year = {2022},
doi = {10.3390/plants11050607},
pmid = {35270077}
}
@article{lin278577,
title = {A Combined Supplement of Probiotic Strains AP-32, bv-77, and CP-9 Increased Akkermansia mucinphila and Reduced Non-Esterified Fatty Acids and Energy Metabolism in HFD-Induced Obese Rats.},
author = {Liao CA, Huang CH, Ho HH, Chen JF, Kuo YW, Lin JH, Tsai SY, Tsai HY, Yeh YT.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14030527},
pmid = {35276886}
}
@article{lin40198,
title = {Biochemical Basis of Xylooligosaccharide Utilisation by Gut Bacteria.},
author = {Singh RP, Bhaiyya R, Thakur R, Niharika J, Singh C, Latousakis D, Saalbach G, Nepogodiev SA, Singh P, Sharma SC, Sengupta S, Juge N, Field RA},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms23062992},
pmid = {35328413}
}
@article{lin278481,
title = {Description of a Newly Isolated Blautia faecis Strain and Its Benefit in Mouse Models of Post-Influenza Secondary Enteric and Pulmonary Infections.},
author = {Verstraeten S, Sencio V, Raise A, Huillet E, Layec S, Deruyter L, Heumel S, Auger S, Robert V, Langella P, Beney L, Trottein F, Thomas M.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14071478},
pmid = {35406091}
}
@article{lin278665,
title = {Distinct responsiveness to rifaximin in patients with hepatic encephalopathy depends on functional gut microbial species.},
author = {Yukawa-Muto Y, Kamiya T, Fujii H, Mori H, Toyoda A, Sato I, Konishi Y, Hirayama A, Hara E, Fukuda S, Kawada N, Ohtani N.},
journal = {Hepatol Commun},
year = {2022},
doi = {10.1002/hep4.1954},
pmid = {35429147}
}
@article{lin278685,
title = {Role of the gut microbiome in three major psychiatric disorders.},
author = {Borkent J, Ioannou M, Laman JD, Haarman BCM, Sommer IEC, Sommer IEC.},
journal = {Psychol Med},
year = {2022},
doi = {10.1017/s0033291722000897},
pmid = {35506416}
}
@article{lin278647,
title = {Adaptation of gut microbiome and host metabolic systems to lignocellulosic degradation in bamboo rats.},
author = {Xiao K, Liang X, Lu H, Li X, Zhang Z, Lu X, Wang H, Meng Y, Roy A, Luo W, Shen X, Irwin DM, Shen Y.},
journal = {ISME J},
year = {2022},
doi = {10.1038/s41396-022-01247-2},
pmid = {35568757}
}
@article{lin278480,
title = {Characterizing the mucin-degrading capacity of the human gut microbiota.},
author = {Glover JS, Ticer TD, Engevik MA.},
journal = {Sci Rep},
year = {2022},
doi = {10.1038/s41598-022-11819-z},
pmid = {35589783}
}
@article{lin278553,
title = {The Role of the Microbiome in Gastroentero-Pancreatic Neuroendocrine Neoplasms (GEP-NENs).},
author = {Mohamed A, Asa SL, McCormick T, Al-Shakhshir H, Dasari A, Mauricio R, Salem I, Ocuin LM, Bajor D, Lee RT, Selfridge JE, Kardan A, Lee Z, Avril N, Kopp S, Winter JM, Hardacre JM, Ammori JB, Ghannoum MA.},
journal = {Curr Issues Mol Biol},
year = {2022},
doi = {10.3390/cimb44050136},
pmid = {35678665}
}
@article{lin278590,
title = {2'-Fucosyllactose Increases the Abundance of Blautia in the Presence of Extracellular Fucosidase-Possessing Bacteria.},
author = {Horigome A, Hashikura N, Yoshida K, Xiao JZ, Odamaki T.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.913624},
pmid = {35722280}
}
@article{lin278617,
title = {SRS-FISH: A high-throughput platform linking microbiome metabolism to identity at the single-cell level.},
author = {Ge X, Pereira FC, Mitteregger M, Berry D, Zhang M, Hausmann B, Zhang J, Schintlmeister A, Wagner M, Cheng JX.},
journal = {Proc Natl Acad Sci U S A},
year = {2022},
doi = {10.1073/pnas.2203519119},
pmid = {35727976}
}
@article{lin278433,
title = {Alternative pathway for dopamine production by acetogenic gut bacteria that O-Demethylate 3-Methoxytyramine, a metabolite of catechol O-Methyltransferase.},
author = {Rich BE, Jackson JC, de Ora LO, Long ZG, Uyeda KS, Bess EN.},
journal = {J Appl Microbiol},
year = {2022},
doi = {10.1111/jam.15682},
pmid = {35737746}
}
@article{lin278624,
title = {Meta-Analysis of Altered Gut Microbiota Reveals Microbial and Metabolic Biomarkers for Colorectal Cancer.},
author = {Avuthu N, Guda C.},
journal = {Microbiol Spectr},
year = {2022},
doi = {10.1128/spectrum.00013-22},
pmid = {35766483}
}
@article{lin278542,
title = {Helicobacter pylori serology is associated with worse overall survival in patients with melanoma treated with immune checkpoint inhibitors.},
author = {Tonneau M, Nolin-Lapalme A, Kazandjian S, Auclin E, Panasci J, Benlaifaoui M, Ponce M, Al-Saleh A, Belkaid W, Naimi S, Mihalcioiu C, Watson I, Bouin M, Miller W, Hudson M, Wong MK, Pezo RC, Turcotte S, Belanger K, Jamal R, Oster P, Velin D, Richard C, Messaoudene M, Elkrief A, Routy B.},
journal = {Oncoimmunology},
year = {2022},
doi = {10.1080/2162402x.2022.2096535},
pmid = {35832043}
}
@article{lin278681,
title = {Identification of clinical and ecological determinants of strain engraftment after fecal microbiota transplantation using metagenomics.},
author = {Podlesny D, Durdevic M, Paramsothy S, Kaakoush NO, Hogenauer C, Gorkiewicz G, Walter J, Fricke WF.},
journal = {Cell Rep Med},
year = {2022},
doi = {10.1016/j.xcrm.2022.100711},
pmid = {35931074}
}
@article{lin278667,
title = {Delayed access to feed early post-hatch affects the development and maturation of gastrointestinal tract microbiota in broiler chickens.},
author = {Proszkowiec-Weglarz M, Miska KB, Ellestad LE, Schreier LL, Kahl S, Darwish N, Campos P, Shao J.},
journal = {BMC Microbiol},
year = {2022},
doi = {10.1186/s12866-022-02619-6},
pmid = {36002800}
}
@article{lin278594,
title = {The prebiotic and anti-fatigue effects of hyaluronan.},
author = {Huang G, Su L, Zhang N, Han R, Leong WK, Li X, Ren X, Hsiao WLW.},
journal = {Front Nutr},
year = {2022},
doi = {10.3389/fnut.2022.977556},
pmid = {36003835}
}
@article{lin278651,
title = {Distribution, biosynthesis and therapeutic potential of lignans.},
author = {Plaha NS, Awasthi S, Sharma A, Kaushik N.},
journal = {3 Biotech},
year = {2022},
doi = {10.1007/s13205-022-03318-9},
pmid = {36065422}
}
@article{lin278513,
title = {A Polyclonal Selex Aptamer Library Directly Allows Specific Labelling of the Human Gut Bacterium Blautia producta without Isolating Individual Aptamers.},
author = {Xing H, Zhang Y, Kramer M, Kissmann AK, Henkel M, Weil T, Knippschild U, Rosenau F.},
journal = {Molecules},
year = {2022},
doi = {10.3390/molecules27175693},
pmid = {36080459}
}
@article{lin278635,
title = {Dietary Modulation of the Human Gut Microbiota and Metabolome with Flaxseed Preparations.},
author = {Kleigrewe K, Haack M, Baudin M, Menabreaz T, Crovadore J, Masri M, Beyrer M, Andlauer W, Lefort F, Dawid C, Bruck TB, Bruck WM.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms231810473},
pmid = {36142393}
}
@article{lin278721,
title = {Lactobacillus supports Clostridiales to restrict gut colonization by multidrug-resistant Enterobacteriaceae.},
author = {Djukovic A, Garzon MJ, Canlet C, Cabral V, Lalaoui R, Garcia-Garcera M, Rechenberger J, Tremblay-Franco M, Penaranda I, Puchades-Carrasco L, Pineda-Lucena A, Gonzalez-Barbera EM, Salavert M, Lopez-Hontangas JL, Sanz MA, Sanz J, Kuster B, Rolain JM, Debrauwer L, Xavier KB, Xavier JB, Ubeda C.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-33313-w},
pmid = {36153315}
}
@article{lin278618,
title = {Metabolic Potential of the Gut Microbiome Is Significantly Impacted by Conditioning Regimen in Allogeneic Hematopoietic Stem Cell Transplantation Recipients.},
author = {Jorgensen M, Norgaard JC, Ilett EE, Marandi RZ, Noguera-Julian M, Paredes R, Murray DD, Lundgren J, MacPherson CR, Sengelov H.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms231911115},
pmid = {36232416}
}
@article{lin278649,
title = {Eggerthella lenta DSM 2243 Alleviates Bile Acid Stress Response in Clostridium ramosum and Anaerostipes caccae by Transformation of Bile Acids.},
author = {Pedersen KJ, Haange SB, Zizalova K, Viehof A, Clavel T, Lenicek M, Engelmann B, Wick LY, Schaap FG, Jehmlich N, Rolle-Kampczyk U, von Bergen M.},
journal = {Microorganisms},
year = {2022},
doi = {10.3390/microorganisms10102025},
pmid = {36296301}
}
@article{lin278645,
title = {Evaluation of Antioxidant Activity and Biotransformation of Opuntia Ficus Fruit: The Effect of In Vitro and Ex Vivo Gut Microbiota Metabolism.},
author = {Sallam IE, Rolle-Kampczyk U, Schape SS, Zaghloul SS, El-Dine RS, Shao P, Bergen MV, Farag MA.},
journal = {Molecules},
year = {2022},
doi = {10.3390/molecules27217568},
pmid = {36364395}
}
@article{lin278715,
title = {Polyphenols as Drivers of a Homeostatic Gut Microecology and Immuno-Metabolic Traits of Akkermansia muciniphila: From Mouse to Man.},
author = {Rodriguez-Daza MC, de Vos WM.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms24010045},
pmid = {36613488}
}
@article{lin278465,
title = {Western diet contributes to the pathogenesis of non-alcoholic steatohepatitis in male mice via remodeling gut microbiota and increasing production of 2-oleoylglycerol.},
author = {Yang M, Qi X, Li N, Kaifi JT, Chen S, Wheeler AA, Kimchi ET, Ericsson AC, Rector RS, Staveley-O'Carroll KF, Li G.},
journal = {Nat Commun},
year = {2023},
doi = {10.1038/s41467-023-35861-1},
pmid = {36646715}
}
@article{lin278604,
title = {MetaProD: A Highly-Configurable Mass Spectrometry Analyzer for Multiplexed Proteomic and Metaproteomic Data.},
author = {Canderan J, Stamboulian M, Ye Y.},
journal = {J Proteome Res},
year = {2023},
doi = {10.1021/acs.jproteome.2c00614},
pmid = {36688801}
}
@article{lin278444,
title = {Design, Biological Evaluation, and Computer-Aided Analysis of Dihydrothiazepines as Selective Antichlamydial Agents.},
author = {de Campos LJ, Seleem MA, Feng J, Pires de Oliveira KM, de Andrade Dos Santos JV, Hayer S, Clayton JB, Kathi S, Fisher DJ, Ouellette SP, Conda-Sheridan M.},
journal = {J Med Chem},
year = {2023},
doi = {10.1021/acs.jmedchem.2c01894},
pmid = {36696579}
}
@article{lin278495,
title = {Association of gut microbiota and glucose metabolism in children with disparate degrees of adiposity.},
author = {Yuan X, Zhang Y, Lin X, Yang X, Chen R.},
journal = {Pediatr Obes},
year = {2023},
doi = {10.1111/ijpo.13009},
pmid = {36704910}
}
@article{lin278438,
title = {The media composition as a crucial element in high-throughput metabolic network reconstruction.},
author = {Borer B, Magnusdottir S.},
journal = {Interface Focus},
year = {2023},
doi = {10.1098/rsfs.2022.0070},
pmid = {36789238}
}
@article{lin278622,
title = {Current progress and critical challenges to overcome in the bioinformatics of mass spectrometry-based metaproteomics.},
author = {Miura N, Okuda S.},
journal = {Comput Struct Biotechnol J},
year = {2023},
doi = {10.1016/j.csbj.2023.01.015},
pmid = {36817962}
}
@article{lin278550,
title = {Effects of Berries, Phytochemicals, and Probiotics on Atherosclerosis through Gut Microbiota Modification: A Meta-Analysis of Animal Studies.},
author = {Khalili L, Centner AM, Salazar G.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24043084},
pmid = {36834497}
}
@article{lin278621,
title = {Gut microbiota modulation in patients with non-alcoholic fatty liver disease: Effects of current treatments and future strategies.},
author = {Maestri M, Santopaolo F, Pompili M, Gasbarrini A, Ponziani FR.},
journal = {Front Nutr},
year = {2023},
doi = {10.3389/fnut.2023.1110536},
pmid = {36875849}
}
@article{lin278496,
title = {Tissue-resident Lachnospiraceae family bacteria protect against colorectal carcinogenesis by promoting tumor immune surveillance.},
author = {Zhang X, Yu D, Wu D, Gao X, Shao F, Zhao M, Wang J, Ma J, Wang W, Qin X, Chen Y, Xia P, Wang S.},
journal = {Cell Host Microbe},
year = {2023},
doi = {10.1016/j.chom.2023.01.013},
pmid = {36893736}
}
@article{lin278633,
title = {Synthetic microbial communities (SynComs) of the human gut: design, assembly, and applications.},
author = {van Leeuwen PT, Brul S, Zhang J, Wortel MT.},
journal = {FEMS Microbiol Rev},
year = {2023},
doi = {10.1093/femsre/fuad012},
pmid = {36931888}
}
@article{lin278580,
title = {Strain-Level Dynamics Reveal Regulatory Roles in Atopic Eczema by Gut Bacterial Phages.},
author = {Chu Y, Meng Q, Yu J, Zhang J, Chen J, Kang Y.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.04551-22},
pmid = {36951555}
}
@article{lin278543,
title = {Grain, Gluten, and Dietary Fiber Intake Influence Gut Microbial Diversity: Data from the Food and Microbiome Longitudinal Investigation.},
author = {Um CY, Peters BA, Choi HS, Oberstein P, Beggs DB, Usyk M, Wu F, Hayes RB, Gapstur SM, McCullough ML, Ahn J.},
journal = {Cancer Res Commun},
year = {2023},
doi = {10.1158/2767-9764.crc-22-0154},
pmid = {36968219}
}
@article{lin278598,
title = {Characterization of vancomycin-resistance vanD gene clusters in the human intestinal microbiota by metagenomics and culture-enriched metagenomics.},
author = {Brochu E, Huletsky A, Boudreau DK, Raymond F, Berube E, Ouameur AA, Frenette J, Boissinot M, Corbeil J, Bergeron MG.},
journal = {JAC Antimicrob Resist},
year = {2023},
doi = {10.1093/jacamr/dlad026},
pmid = {36968950}
}
@article{lin278610,
title = {Effects of Mexican Ganoderma lucidum extracts on liver, kidney, and the gut microbiota of Wistar rats: A repeated dose oral toxicity study.},
author = {Meneses ME, Martinez-Carrera D, Gonzalez-Ibanez L, Torres N, Sanchez-Tapia M, Marquez-Mota CC, Rendon G, Mitzi V, Morales A, Tello-Salgado I, Tovar AR.},
journal = {PLoS One},
year = {2023},
doi = {10.1371/journal.pone.0283605},
pmid = {37022999}
}
@article{lin278524,
title = {Different Diet Energy Levels Alter Body Condition, Glucolipid Metabolism, Fecal Microbiota and Metabolites in Adult Beagle Dogs.},
author = {Sun H, Zhang Q, Xu C, Xu C, Mao A, Zhao H, Chen M, Sun W, Li G, Zhang T.},
journal = {Metabolites},
year = {2023},
doi = {10.3390/metabo13040554},
pmid = {37110212}
}
@article{lin278565,
title = {Intestinal microbiome characterization of adult Brazilian men with psoriasis compared to omnivore and vegetarian controls.},
author = {Polo TCF, Lai MRR, Miot LDB, Bento GFC, Silva MGD, Marques SA, Miot HA.},
journal = {An Bras Dermatol},
year = {2023},
doi = {10.1016/j.abd.2022.08.008},
pmid = {37156688}
}
@article{lin278627,
title = {Phage display sequencing reveals that genetic, environmental, and intrinsic factors influence variation of human antibody epitope repertoire.},
author = {Andreu-Sanchez S, Bourgonje AR, Vogl T, Kurilshikov A, Leviatan S, Ruiz-Moreno AJ, Hu S, Sinha T, Vich Vila A, Klompus S, Kalka IN, de Leeuw K, Arends S, Jonkers I, Withoff S, Lifelines Cohort Study, Brouwer E, Weinberger A, Wijmenga C, Segal E, Weersma RK, Fu J, Zhernakova A.},
journal = {Immunity},
year = {2023},
doi = {10.1016/j.immuni.2023.04.003},
pmid = {37164013}
}
@article{lin278464,
title = {Utilization of dietary mixed-linkage beta-glucans by the Firmicute Blautia producta.},
author = {Singh RP, Niharika J, Thakur R, Wagstaff BA, Kumar G, Kurata R, Patel D, Levy CW, Miyazaki T, Field RA.},
journal = {J Biol Chem},
year = {2023},
doi = {10.1016/j.jbc.2023.104806},
pmid = {37172725}
}
@article{lin278467,
title = {beta-glucans: a potential source for maintaining gut microbiota and the immune system.},
author = {Singh RP, Bhardwaj A.},
journal = {Front Nutr},
year = {2023},
doi = {10.3389/fnut.2023.1143682},
pmid = {37215217}
}
@article{lin278587,
title = {Accounting Gut Microbiota as the Mediator of Beneficial Effects of Dietary (Poly)phenols on Skeletal Muscle in Aging.},
author = {Ticinesi A, Nouvenne A, Cerundolo N, Parise A, Meschi T.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15102367},
pmid = {37242251}
}
@article{lin278576,
title = {Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community.},
author = {Mori H, Kato T, Ozawa H, Sakamoto M, Murakami T, Taylor TD, Toyoda A, Ohkuma M, Kurokawa K, Ohno H.},
journal = {DNA Res},
year = {2023},
doi = {10.1093/dnares/dsad010},
pmid = {37253538}
}
@article{lin278641,
title = {Fungal beta-glucan-facilitated cross-feeding activities between Bacteroides and Bifidobacterium species.},
author = {Fernandez-Julia P, Black GW, Cheung W, Van Sinderen D, Munoz-Munoz J.},
journal = {Commun Biol},
year = {2023},
doi = {10.1038/s42003-023-04970-4},
pmid = {37253778}
}
@article{lin278607,
title = {Gut microbiome determines therapeutic effects of OCA on NAFLD by modulating bile acid metabolism.},
author = {Liu J, Sun J, Yu J, Chen H, Zhang D, Zhang T, Ma Y, Zou C, Zhang Z, Ma L, Yu X.},
journal = {NPJ Biofilms Microbiomes},
year = {2023},
doi = {10.1038/s41522-023-00399-z},
pmid = {37258543}
}
@article{lin278500,
title = {Strain-level screening of human gut microbes identifies Blautia producta as a new anti-hyperlipidemic probiotic.},
author = {Xu W, Yu J, Yang Y, Li Z, Zhang Y, Zhang F, Wang Q, Xie Y, Zhao B, Wu C.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2228045},
pmid = {37408362}
}
@article{lin278493,
title = {Metagenomic Analysis of Intratumoral Microbiome Linking to Response to Neoadjuvant Chemoradiotherapy in Rectal Cancer.},
author = {Huang X, Chen C, Xie W, Zhou C, Tian X, Zhang Z, Wang Q, Chang H, Xiao W, Zhang R, Gao Y.},
journal = {Int J Radiat Oncol Biol Phys},
year = {2023},
doi = {10.1016/j.ijrobp.2023.06.2515},
pmid = {37433373}
}
@article{lin278533,
title = {Statistical modeling of gut microbiota for personalized health status monitoring.},
author = {Zhu J, Xie H, Yang Z, Chen J, Yin J, Tian P, Wang H, Zhao J, Zhang H, Lu W, Chen W.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01614-x},
pmid = {37596617}
}
@article{lin278486,
title = {Gut microbial carbohydrate metabolism contributes to insulin resistance.},
author = {Takeuchi T, Kubota T, Nakanishi Y, Tsugawa H, Suda W, Kwon AT, Yazaki J, Ikeda K, Nemoto S, Mochizuki Y, Kitami T, Yugi K, Mizuno Y, Yamamichi N, Yamazaki T, Takamoto I, Kubota N, Kadowaki T, Arner E, Carninci P, Ohara O, Arita M, Hattori M, Koyasu S, Ohno H.},
journal = {Nature},
year = {2023},
doi = {10.1038/s41586-023-06466-x},
pmid = {37648852}
}
@article{lin278462,
title = {Biochemical characterization of bifunctional enzymatic activity of a recombinant protein (Bp0469) from Blautia producta ATCC 27340 and its role in the utilization of arabinogalactan oligosaccharides.},
author = {Bhaiyya R, Sharma SC, Singh RP.},
journal = {Int J Biol Macromol},
year = {2023},
doi = {10.1016/j.ijbiomac.2023.126736},
pmid = {37678698}
}
@article{lin278435,
title = {Identification of proteoforms of short open reading frame-encoded peptides in Blautia producta under different cultivation conditions.},
author = {Genth J, Schafer K, Cassidy L, Graspeuntner S, Rupp J, Tholey A.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.02528-23},
pmid = {37782090}
}
@article{lin278476,
title = {Blautia parvula sp. nov., isolated from Japanese faecal samples.},
author = {Miura T, Shimamura M, Yamazoe A, Kawasaki H.},
journal = {Int J Syst Evol Microbiol},
year = {2023},
doi = {10.1099/ijsem.0.005871},
pmid = {37971477}
}
@article{lin278434,
title = {Density and Conservation Optimization of the Generalized Masked-Minimizer Sketching Scheme.},
author = {Hoang M, Marcais G, Kingsford C.},
journal = {J Comput Biol},
year = {2024},
doi = {10.1089/cmb.2023.0212},
pmid = {37975802}
}
@article{lin278525,
title = {Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium.},
author = {Martin AJM, Serebrinsky-Duek K, Riquelme E, Saa PA, Garrido D.},
journal = {Microbiome Res Rep},
year = {2023},
doi = {10.20517/mrr.2023.10},
pmid = {38046822}
}
@article{lin278520,
title = {The Relationship Between the Microbiome and Antimicrobial Resistance.},
author = {Nhu NTQ, Young VB.},
journal = {Clin Infect Dis},
year = {2023},
doi = {10.1093/cid/ciad641},
pmid = {38051965}
}
@article{lin278585,
title = {Gut microbiota links to serum ferritin and cognition.},
author = {Rosell-Diaz M, Santos-Gonzalez E, Motger-Alberti A, Ramio-Torrenta L, Garre-Olmo J, Perez-Brocal V, Moya A, Jove M, Pamplona R, Puig J, Ramos R, Fernandez-Real JM, Mayneris-Perxachs J.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2290318},
pmid = {38059755}
}
@article{lin278676,
title = {Commensal bacteria promote type I interferon signaling to maintain immune tolerance in mice.},
author = {Vasquez Ayala A, Hsu CY, Oles RE, Matsuo K, Loomis LR, Buzun E, Carrillo Terrazas M, Gerner RR, Lu HH, Kim S, Zhang Z, Park JH, Rivaud P, Thomson M, Lu LF, Min B, Chu H.},
journal = {J Exp Med},
year = {2024},
doi = {10.1084/jem.20230063},
pmid = {38085267}
}
@article{lin278557,
title = {Modulative effect of Physalis alkekengi on both gut bacterial and fungal micro-ecosystem.},
author = {Yang Y, Zhao X, Xie Y, Wu C.},
journal = {Chin Herb Med},
year = {2023},
doi = {10.1016/j.chmed.2023.02.003},
pmid = {38094014}
}
@article{lin278675,
title = {Berberine-microbiota interplay: orchestrating gut health through modulation of the gut microbiota and metabolic transformation into bioactive metabolites.},
author = {Dehau T, Cherlet M, Croubels S, Van De Vliet M, Goossens E, Van Immerseel F.},
journal = {Front Pharmacol},
year = {2023},
doi = {10.3389/fphar.2023.1281090},
pmid = {38130410}
}
@article{lin278601,
title = {Type-2 Diabetes Mellitus and the Gut Microbiota: Systematic Review.},
author = {Slouha E, Rezazadah A, Farahbod K, Gerts A, Clunes LA, Kollias TF.},
journal = {Cureus},
year = {2023},
doi = {10.7759/cureus.49740},
pmid = {38161953}
}
@article{lin278549,
title = {Canagliflozin attenuates kidney injury, gut-derived toxins, and gut microbiota imbalance in high-salt diet-fed Dahl salt-sensitive rats.},
author = {He L, Zuo Q, Ma S, Zhang G, Wang Z, Zhang T, Zhai J, Guo Y.},
journal = {Ren Fail},
year = {2024},
doi = {10.1080/0886022x.2023.2300314},
pmid = {38189082}
}
@article{lin278611,
title = {A bacterial sialidase mediates early-life colonization by a pioneering gut commensal.},
author = {Buzun E, Hsu CY, Sejane K, Oles RE, Vasquez Ayala A, Loomis LR, Zhao J, Rossitto LA, McGrosso DM, Gonzalez DJ, Bode L, Chu H.},
journal = {Cell Host Microbe},
year = {2024},
doi = {10.1016/j.chom.2023.12.014},
pmid = {38228143}
}
@article{lin278674,
title = {Microbiome in Cancer Development and Treatment.},
author = {Ciernikova S, Sevcikova A, Mladosievicova B, Mego M.},
journal = {Microorganisms},
year = {2023},
doi = {10.3390/microorganisms12010024},
pmid = {38257851}
}
@article{lin278562,
title = {Activity of Gut-Derived Nisin-like Lantibiotics against Human Gut Pathogens and Commensals.},
author = {Zhang ZJ, Wu C, Moreira R, Dorantes D, Pappas T, Sundararajan A, Lin H, Pamer EG, van der Donk WA.},
journal = {ACS Chem Biol},
year = {2024},
doi = {10.1021/acschembio.3c00577},
pmid = {38293740}
}
@article{lin278592,
title = {Gut microbiota composition is altered in postural orthostatic tachycardia syndrome and post-acute COVID-19 syndrome.},
author = {Hamrefors V, Kahn F, Holmqvist M, Carlson K, Varjus R, Gudjonsson A, Fedorowski A, Ohlsson B.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-53784-9},
pmid = {38336892}
}
@article{lin278477,
title = {Vitamin B12 analogues from gut microbes and diet differentially impact commensal propionate producers of the human gut.},
author = {Kundra P, Greppi A, Duppenthaler M, Pluss S, Pugin B, Lacroix C, Geirnaert A.},
journal = {Front Nutr},
year = {2024},
doi = {10.3389/fnut.2024.1360199},
pmid = {38389799}
}
@article{lin278491,
title = {A Dual Therapeutic Approach to Diabetes Mellitus via Bioactive Phytochemicals Found in a Poly Herbal Extract by Restoration of Favorable Gut Flora and Related Short-Chain Fatty Acids.},
author = {Singh AK, Kumar P, Mishra SK, Rajput VD, Tiwari KN, Singh AK, Minkina T, Pandey AK, Upadhyay P.},
journal = {Appl Biochem Biotechnol},
year = {2024},
doi = {10.1007/s12010-024-04879-6},
pmid = {38393580}
}
@article{lin278532,
title = {IMPATIENT-qPCR: monitoring SELEX success during in vitro aptamer evolution.},
author = {Kissmann AK, Bolotnikov G, Li R, Muller F, Xing H, Kramer M, Gottschalk KE, Andersson J, Weil T, Rosenau F.},
journal = {Appl Microbiol Biotechnol},
year = {2024},
doi = {10.1007/s00253-024-13085-7},
pmid = {38573322}
}
@article{lin278637,
title = {Longitudinal multi-omics analysis uncovers the altered landscape of gut microbiota and plasma metabolome in response to high altitude.},
author = {Han Y, Liu X, Jia Q, Xu J, Shi J, Li X, Xie G, Zhao X, He K.},
journal = {Microbiome},
year = {2024},
doi = {10.1186/s40168-024-01781-5},
pmid = {38581016}
}
@article{lin278578,
title = {Washed microbiota transplantation for Crohn's disease: A metagenomic, metatranscriptomic, and metabolomic-based study.},
author = {Chen SJ, Zhang DY, Wu X, Zhang FM, Cui BT, Huang YH, Zhang ZL, Wang R, Bai FH.},
journal = {World J Gastroenterol},
year = {2024},
doi = {10.3748/wjg.v30.i11.1572},
pmid = {38617453}
}
@article{lin278527,
title = {Designing function-specific minimal microbiomes from large microbial communities.},
author = {Raghu AK, Palanikumar I, Raman K.},
journal = {NPJ Syst Biol Appl},
year = {2024},
doi = {10.1038/s41540-024-00373-1},
pmid = {38702322}
}
@article{lin278522,
title = {Uncovering specific taxonomic and functional alteration of gut microbiota in chronic kidney disease through 16S rRNA data.},
author = {Zhang Y, Zhong W, Liu W, Wang X, Lin G, Lin J, Fang J, Mou X, Jiang S, Huang J, Zhao W, Zheng Z.},
journal = {Front Cell Infect Microbiol},
year = {2024},
doi = {10.3389/fcimb.2024.1363276},
pmid = {38707511}
}
@article{lin278471,
title = {A Gram-negative-selective antibiotic that spares the gut microbiome.},
author = {Munoz KA, Ulrich RJ, Vasan AK, Sinclair M, Wen PC, Holmes JR, Lee HY, Hung CC, Fields CJ, Tajkhorshid E, Lau GW, Hergenrother PJ.},
journal = {Nature},
year = {2024},
doi = {10.1038/s41586-024-07502-0},
pmid = {38811738}
}
@article{lin278497,
title = {Reoxygenation Mitigates Intermittent Hypoxia-Induced Systemic Inflammation and Gut Microbiota Dysbiosis in High-Fat Diet-Induced Obese Rats.},
author = {Dong M, Liang X, Zhu T, Xu T, Xie L, Feng Y.},
journal = {Nat Sci Sleep},
year = {2024},
doi = {10.2147/nss.s454297},
pmid = {38812701}
}
@article{lin278589,
title = {ATG16L1 in myeloid cells limits colorectal tumor growth in ApcMin/+ mice infected with colibactin-producing Escherichia coli via decreasing inflammasome activation.},
author = {Salesse L, Duval A, Sauvanet P, Da Silva A, Barnich N, Godfraind C, Dalmasso G, Nguyen HTT.},
journal = {Autophagy},
year = {2024},
doi = {10.1080/15548627.2024.2359770},
pmid = {38818900}
}
@article{lin278510,
title = {Effects of Different Carbohydrate Content Diet on Gut Microbiota and Aortic Calcification in Diabetic Mice.},
author = {Shen X, Guo G, Feng G, Wang Z.},
journal = {Diabetes Metab Syndr Obes},
year = {2024},
doi = {10.2147/dmso.s456571},
pmid = {38881695}
}
@article{lin278555,
title = {Structural Variances in Curcumin Degradants: Impact on Obesity in Mice.},
author = {Koh YC, Hsu HW, Ho PY, Hsu KY, Lin WS, Nagabhushanam K, Ho CT, Pan MH.},
journal = {J Agric Food Chem},
year = {2024},
doi = {10.1021/acs.jafc.4c03768},
pmid = {38902910}
}
@article{lin278507,
title = {Examining homoacetogens in feces from adult and juvenile kangaroos with the aim of finding competitive strains to hydrogenotrophic methanogens.},
author = {Stefanini R, Karekar S, Ale Enriquez F, Ahring B.},
journal = {Microbiol Spectr},
year = {2024},
doi = {10.1128/spectrum.03183-23},
pmid = {38904373}
}
@article{lin278584,
title = {Gut microbiota signatures of vulnerability to food addiction in mice and humans.},
author = {Samulenaite S, Garcia-Blanco A, Mayneris-Perxachs J, Domingo-Rodriguez L, Cabana-Dominguez J, Fernandez-Castillo N, Gago-Garcia E, Pineda-Cirera L, Burokas A, Espinosa-Carrasco J, Arboleya S, Latorre J, Stanton C, Hosomi K, Kunisawa J, Cormand B, Fernandez-Real JM, Maldonado R, Martin-Garcia E.},
journal = {Gut},
year = {2024},
doi = {10.1136/gutjnl-2023-331445},
pmid = {38926079}
}
@article{lin278569,
title = {An in vitro model system for testing chemical effects on microbiome-immune interactions - examples with BPX and PFAS mixtures.},
author = {Fischer F, Pierzchalski A, Riesbeck S, Aldehoff AS, Castaneda-Monsalve VA, Haange SB, von Bergen M, Rolle-Kampczyk UE, Jehmlich N, Zenclussen AC, Herberth G.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1298971},
pmid = {38953021}
}
@article{lin278568,
title = {Gut microbiota characteristics of colorectal cancer patients in Hubei, China, and differences with cohorts from other Chinese regions.},
author = {Shi J, Shen H, Huang H, Zhan L, Chen W, Zhou Z, Lv Y, Xiong K, Jiang Z, Chen Q, Liu L.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1395514},
pmid = {38962132}
}
@article{lin278567,
title = {Exploring the Relationship between MicroRNAs, Intratumoral Microbiota, and Breast Cancer Progression in Patients with and without Metastasis.},
author = {Laborda-Illanes A, Aranega-Martin L, Sanchez-Alcoholado L, Boutriq S, Plaza-Andrades I, Peralta-Linero J, Garrido Ruiz G, Pajares-Hachero B, Alvarez M, Alba E, Gonzalez-Gonzalez A, Queipo-Ortuno MI.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25137091},
pmid = {39000198}
}
@article{lin278638,
title = {A history of repeated antibiotic usage leads to microbiota-dependent mucus defects.},
author = {Krigul KL, Feeney RH, Wongkuna S, Aasmets O, Holmberg SM, Andreson R, Puertolas-Balint F, Pantiukh K, Sootak L, Org T, Tenson T, Org E, Schroeder BO.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2377570},
pmid = {39034613}
}
@article{lin278530,
title = {Mediation effect of gut microbiota on the relationship between physical activity and carotid plaque.},
author = {Ouyang W, Tang B, He Y, Wu H, Yang P, Yin L, Li X, Li Y, Huang X.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1432008},
pmid = {39056008}
}
@article{lin278575,
title = {Beneficial Effects of Probiotic Lactobacillus paraplantarum BGCG11 on Pancreatic and Duodenum Function in Diabetic Rats.},
author = {Mihailovic M, Sokovic Bajic S, Arambasic Jovanovic J, Brdaric E, Dinic S, Grdovic N, Uskokovic A, Rajic J, Dordevic M, Tolinacki M, Golic N, Zivkovic M, Vidakovic M.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25147697},
pmid = {39062940}
}
@article{lin278566,
title = {The Impact of Microbiome Dysbiosis on Hematopoietic Stem Cell Transplantation Outcomes: A Review Article.},
author = {Khalil Z, Maher S.},
journal = {Cureus},
year = {2024},
doi = {10.7759/cureus.63995},
pmid = {39109116}
}
@article{lin278603,
title = {Antioxidant Role of Probiotics in Inflammation-Induced Colorectal Cancer.},
author = {Hamamah S, Lobiuc A, Covasa M.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25169026},
pmid = {39201713}
}
@article{lin278492,
title = {Hepatic Steatosis Can Be Partly Generated by the Gut Microbiota-Mitochondria Axis via 2-Oleoyl Glycerol and Reversed by a Combination of Soy Protein, Chia Oil, Curcumin and Nopal.},
author = {Sanchez-Tapia M, Tobon-Cornejo S, Noriega LG, Vazquez-Manjarrez N, Coutino-Hernandez D, Granados-Portillo O, Roman-Calleja BM, Ruiz-Margain A, Macias-Rodriguez RU, Tovar AR, Torres N.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16162594},
pmid = {39203731}
}
@article{lin278436,
title = {Measuring and understanding information storage and transfer in a simulated human gut microbiome.},
author = {Zoller H, Garcia Perez C, Betel Geijo Fernandez J, Zu Castell W.},
journal = {PLoS Comput Biol},
year = {2024},
doi = {10.1371/journal.pcbi.1012359},
pmid = {39288161}
}
@article{lin278572,
title = {Microbial transformation of dietary xenobiotics shapes gut microbiome composition.},
author = {Culp EJ, Nelson NT, Verdegaal AA, Goodman AL.},
journal = {Cell},
year = {2024},
doi = {10.1016/j.cell.2024.08.038},
pmid = {39321800}
}
@article{lin278529,
title = {Intratumoral microbiota in colorectal cancer: focus on specific distribution and potential mechanisms.},
author = {Long J, Wang J, Xiao C, You F, Jiang Y, Li X.},
journal = {Cell Commun Signal},
year = {2024},
doi = {10.1186/s12964-024-01831-3},
pmid = {39327582}
}
@article{lin278478,
title = {Microbially-produced folate forms support the growth of Roseburia intestinalis but not its competitive fitness in fecal batch fermentations.},
author = {Kundra P, Geirnaert A, Pugin B, Pluss S, Kariluoto S, Lacroix C, Greppi A.},
journal = {BMC Microbiol},
year = {2024},
doi = {10.1186/s12866-024-03528-6},
pmid = {39342101}
}
@article{lin278609,
title = {Escherichia coli on colorectal cancer: A two-edged sword.},
author = {Jian C, Yinhang W, Jing Z, Zhanbo Q, Zefeng W, Shuwen H.},
journal = {Microb Biotechnol},
year = {2024},
doi = {10.1111/1751-7915.70029},
pmid = {39400440}
}
@article{lin278548,
title = {Intestinal microbiota composition in broilers fed protein-free or casein-based diets.},
author = {Rubio LA.},
journal = {Poult Sci},
year = {2024},
doi = {10.1016/j.psj.2024.104365},
pmid = {39413701}
}
@article{lin278551,
title = {Seasonal stability of the rumen microbiome contributes to the adaptation patterns to extreme environmental conditions in grazing yak and cattle.},
author = {Guo W, Zhou M, Li F, Neves ALA, Ma T, Bi S, Wang W, Long R, Guan LL.},
journal = {BMC Biol},
year = {2024},
doi = {10.1186/s12915-024-02035-4},
pmid = {39443951}
}
@article{lin278498,
title = {Degradation mechanism of difructose dianhydride III in Blautia species.},
author = {Ye T, Horigome A, Kaneko H, Odamaki T, Kitahara K, Fujita K.},
journal = {Appl Microbiol Biotechnol},
year = {2024},
doi = {10.1007/s00253-024-13346-5},
pmid = {39500763}
}
@article{lin278538,
title = {The gut microbiome is associated with susceptibility to febrile malaria in Malian children.},
author = {Van Den Ham KM, Bower LK, Li S, Lorenzi H, Doumbo S, Doumtabe D, Kayentao K, Ongoiba A, Traore B, Crompton PD, Schmidt NW.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-52953-8},
pmid = {39500866}
}
@article{lin278531,
title = {Immunoglobulin-coating patterns reveal altered humoral responses to gut bacteria in pediatric cow milk allergies.},
author = {Augustine T, Murugesan S, Badri F, Gentilcore G, Grivel JC, Akobeng A, Elawad M, Adeli M, Al Khodor S, van Panhuys N.},
journal = {J Transl Med},
year = {2024},
doi = {10.1186/s12967-024-05850-z},
pmid = {39533360}
}
@article{lin278505,
title = {A Review of Fecal Microbiota Transplantation in Children-Exploring Its Role in the Treatment of Inflammatory Bowel Diseases.},
author = {Ko Y, Alaedin S, Fernando D, Zhou J, Ho V.},
journal = {Medicina (Kaunas)},
year = {2024},
doi = {10.3390/medicina60111899},
pmid = {39597084}
}
@article{lin278514,
title = {Specific gFET-Based Aptasensors for Monitoring of Microbiome Quality: Quantification of the Enteric Health-Relevant Bacterium Roseburia Intestinalis.},
author = {Zhang Y, Xing H, Li R, Andersson J, Bozdogan A, Strassl R, Draphoen B, Linden M, Henkel M, Knippschild U, Hasler R, Kleber C, Knoll W, Kissmann AK, Rosenau F.},
journal = {Adv Healthc Mater},
year = {2025},
doi = {10.1002/adhm.202403827},
pmid = {39663689}
}
@article{lin278509,
title = {Gut microbiome and NAFLD: impact and therapeutic potential.},
author = {Li L, Cai F, Guo C, Liu Z, Qin J, Huang J.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1500453},
pmid = {39664063}
}
@article{lin278461,
title = {Discovery of a Gut Bacterial Pathway for Ergothioneine Catabolism.},
author = {Feng C, Yan Q, Li X, Zhao H, Huang H, Zhang X.},
journal = {J Am Chem Soc},
year = {2025},
doi = {10.1021/jacs.4c09350},
pmid = {39700343}
}
@article{lin278558,
title = {Gut microbiota and bile acids: Metabolic interactions and impacts on diabetic kidney disease.},
author = {Liu P, Jin M, Hu P, Sun W, Tang Y, Wu J, Zhang D, Yang L, He H, Xu X.},
journal = {Curr Res Microb Sci},
year = {2024},
doi = {10.1016/j.crmicr.2024.100315},
pmid = {39726973}
}
@article{lin278488,
title = {Cell free supernatants of Bifidobacterium adolescentis and Bifidobacterium longum suppress the tumor growth in colorectal cancer organoid model.},
author = {Kim MJ, Song MH, Ji YS, Park JW, Shin YK, Kim SC, Kim G, Cho B, Park H, Ku JL, Jeong SY.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-024-83048-5},
pmid = {39762302}
}
@article{lin278432,
title = {Changes in the intestinal microbiota of broiler chicken induced by dietary supplementation of the diatomite-bentonite mixture.},
author = {Wesierska E, Micek P, Adamski MG, Gondek K, Lis M, Trela M, Wojtysiak D, Kowal J, Wyrobisz-Papiewska A, Kunstman G, Mosiolek S, Smoron K.},
journal = {BMC Vet Res},
year = {2025},
doi = {10.1186/s12917-024-04439-4},
pmid = {39799366}
}
@article{lin278502,
title = {Understanding the role of the gut microbiome in solid tumor responses to immune checkpoint inhibitors for personalized therapeutic strategies: a review.},
author = {Lim MY, Hong S, Nam YD.},
journal = {Front Immunol},
year = {2024},
doi = {10.3389/fimmu.2024.1512683},
pmid = {39840031}
}
@article{lin278628,
title = {Microbiota translocation following intestinal barrier disruption promotes Mincle-mediated training of myeloid progenitors in the bone marrow.},
author = {Robles-Vera I, Jarit-Cabanillas A, Brandi P, Martinez-Lopez M, Martinez-Cano S, Rodrigo-Tapias M, Femenia-Muina M, Redondo-Urzainqui A, Nunez V, Gonzalez-Correa C, Moleon J, Duarte J, Conejero L, Mata-Martinez P, Diez-Rivero CM, Bergon-Gutierrez M, Fernandez-Lopez I, Gomez MJ, Quintas A, Dopazo A, Sanchez-Cabo F, Pariente E, Del Fresno C, Subiza JL, Iborra S, Sancho D.},
journal = {Immunity},
year = {2025},
doi = {10.1016/j.immuni.2024.12.012},
pmid = {39848243}
}
@article{lin278563,
title = {Fecal microbiota transplantation to prevent acute graft-versus-host disease: pre-planned interim analysis of donor effect.},
author = {Reddi S, Senyshyn L, Ebadi M, Podlesny D, Minot SS, Gooley T, Kabage AJ, Hill GR, Lee SJ, Khoruts A, Rashidi A.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-56375-y},
pmid = {39863610}
}
@article{lin278554,
title = {Convergent evolution of oxidized sugar metabolism in commensal and pathogenic microbes in the inflamed gut.},
author = {Levy S, Jiang AK, Grant MR, Arp G, Minabou Ndjite G, Jiang X, Hall B.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-56332-9},
pmid = {39875389}
}
@article{lin278490,
title = {Exploring the role of acylated ghrelin and gut microbiome in delineating cognitive health in the elderly.},
author = {Rout S, Dash R, Satish V, Venugopal G, Rao BN, Bandhyopadhyay D, Bhoi SK, Ramadass B.},
journal = {Aging (Albany NY)},
year = {2025},
doi = {10.18632/aging.206200},
pmid = {39927883}
}
@article{lin278523,
title = {The nisin O cluster: species dissemination, candidate leader peptide proteases and the role of regulatory systems.},
author = {Scadden J, Ansorge R, Romano S, Telatin A, Baker DJ, Evans R, Gherghisan-Filip C, Zhang ZJ, Mayer MJ, Narbad A.},
journal = {Microbiology (Reading)},
year = {2025},
doi = {10.1099/mic.0.001531},
pmid = {39928552}
}
@article{lin278539,
title = {Effects of Vegetable and Fruit Juicing on Gut and Oral Microbiome Composition.},
author = {Sardaro MLS, Grote V, Baik J, Atallah M, Amato KR, Ring M.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17030458},
pmid = {39940316}
}
@article{lin278588,
title = {Intratumoral microbiome: implications for immune modulation and innovative therapeutic strategies in cancer.},
author = {Wang N, Wu S, Huang L, Hu Y, He X, He J, Hu B, Xu Y, Rong Y, Yuan C, Zeng X, Wang F.},
journal = {J Biomed Sci},
year = {2025},
doi = {10.1186/s12929-025-01117-x},
pmid = {39966840}
}
@article{lin278516,
title = {Complex Probiotics Ameliorate Fecal Microbiota Transplantation-Induced IBS in Mice via Gut Microbiota and Metabolite Modulation.},
author = {Gao Y, Borjihan Q, Zhang W, Li L, Wang D, Bai L, Zhu S, Chen Y.},
journal = {Nutrients},
year = {2025},
doi = {10.3390/nu17050801},
pmid = {40077671}
}
@article{lin278544,
title = {Severe Cognitive Decline in Long-term Care Is Related to Gut Microbiome Production of Metabolites Involved in Neurotransmission, Immunomodulation, and Autophagy.},
author = {Shoubridge AP, Carpenter L, Flynn E, Papanicolas LE, Collins J, Gordon D, Lynn DJ, Whitehead C, Leong LEX, Cations M, De Souza DP, Narayana VK, Choo JM, Wesselingh SL, Crotty M, Inacio MC, Ivey K, Taylor SL, Rogers GB.},
journal = {J Gerontol A Biol Sci Med Sci},
year = {2025},
doi = {10.1093/gerona/glaf053},
pmid = {40166866}
}
@article{lin278450,
title = {Bifidobacteria support optimal infant vaccine responses.},
author = {Ryan FJ, Clarke M, Lynn MA, Benson SC, McAlister S, Giles LC, Choo JM, Rossouw C, Ng YY, Semchenko EA, Richard A, Leong LEX, Taylor SL, Blake SJ, Mugabushaka JI, Walker M, Wesselingh SL, Licciardi PV, Seib KL, Tumes DJ, Richmond P, Rogers GB, Marshall HS, Lynn DJ.},
journal = {Nature},
year = {2025},
doi = {10.1038/s41586-025-08796-4},
pmid = {40175554}
}
@article{lin278506,
title = {The double-edged sword: impact of antibiotic use on immunotherapy efficacy in advanced hepatocellular carcinoma.},
author = {Li Y, Feng Z, Liang C, Lu S, Wang G, Meng G.},
journal = {BMC Gastroenterol},
year = {2025},
doi = {10.1186/s12876-025-03819-w},
pmid = {40186095}
}
@article{lin278501,
title = {Surrogate markers of intestinal dysfunction associated with survival in advanced cancers.},
author = {Birebent R, Drubay D, Alves Costa Silva C, Marmorino F, Vitali G, Piccinno G, Hurtado Y, Bonato A, Belluomini L, Messaoudene M, Routy B, Fidelle M, Zalcman G, Mazieres J, Audigier-Valette C, Moro-Sibilot D, Goldwasser F, Scherpereel A, Pegliasco H, Ghiringhelli F, Reni A, Barlesi F, Albiges L, Planchard D, Martinez S, Besse B, Segata N, Cremolini C, Zitvogel L, Iebba V, Derosa L.},
journal = {Oncoimmunology},
year = {2025},
doi = {10.1080/2162402x.2025.2484880},
pmid = {40189749}
}
@article{lin278547,
title = {Leveraging strain competition to address antimicrobial resistance with microbiota therapies.},
author = {Barrios Steed D, Koundakjian D, Harris AD, Rosato AE, Konstantinidis KT, Woodworth MH.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2488046},
pmid = {40195644}
}
@article{lin278536,
title = {Food colorant brilliant blue causes persistent functional and structural changes in an in vitro simplified microbiota model system.},
author = {Castaneda-Monsalve V, Haange SB, Frohlich LF, Fu Q, Rolle-Kampczyk U, von Bergen M, Jehmlich N.},
journal = {ISME Commun},
year = {2025},
doi = {10.1093/ismeco/ycaf050},
pmid = {40201425}
}
@article{lin278463,
title = {Optimizing Precision Probiotics for Mitigating Graft-Versus-Host Disease.},
author = {Ebigbo N, Long A, Do P, Coughlin L, Poulides N, Jewell T, Gan S, Zhan X, Koh AY.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13040706},
pmid = {40284543}
}
@article{lin278515,
title = {Distinct Effects of Lactiplantibacillus plantarum HNU082 on Microbial Single-Nucleotide Variants in Large Intestine and Small Intestine.},
author = {Ma W, Han Z, Liu X, Cui W, Zhen D, Zhou X, Song Y, Jiang S.},
journal = {Microorganisms},
year = {2025},
doi = {10.3390/microorganisms13040731},
pmid = {40284568}
}
@article{lin278508,
title = {Dietary polyunsaturated fatty acids effect on cecal microbiome profile of maturing broiler chicken.},
author = {Jadhav VV, Fasina YO, Harrison SH.},
journal = {Poult Sci},
year = {2025},
doi = {10.1016/j.psj.2025.105167},
pmid = {40315582}
}
@article{lin278494,
title = {Association of the gut microbiota with type 2 diabetes: Links to disease and remission in the Japanese population.},
author = {Kinoshita K, Ozato N, Yamaguchi T, Mori K, Katsuragi Y, Sato N, Imoto S, Ihara K, Murashita K, Nakaji S, Mikami T.},
journal = {J Diabetes Investig},
year = {2025},
doi = {10.1111/jdi.70061},
pmid = {40331921}
}
@article{lin278537,
title = {Fecal carriage of multidrug-resistant organisms increases the risk of hepatic encephalopathy in patients with cirrhosis: insights from gut microbiota and metabolite features.},
author = {Wu PS, Lee PC, Chang TE, Hsieh YC, Huang CW, Lin CH, Huang YL, Lin YT, Huo TI, Schnabl B, Lee KC, Hou MC.},
journal = {Gut Pathog},
year = {2025},
doi = {10.1186/s13099-025-00706-3},
pmid = {40380209}
}
@article{lin278528,
title = {Integrated microbiome and metabolome analysis reveals a novel interplay between gut microbiota and metabolites in differentiated thyroid carcinoma.},
author = {Jiang X, Liu Q, Xu D, Pang H, Shi Y.},
journal = {BMC Microbiol},
year = {2025},
doi = {10.1186/s12866-025-03877-w},
pmid = {40448029}
}
@article{lin366534,
title = {A discovery platform for identification of host-induced bacterial biosensors from diverse sources.},
author = {Robinson CM, Carreno D, Weber T, Chen Y, Riglar DT.},
journal = {Mol Syst Biol},
year = {2025},
doi = {10.1038/s44320-025-00123-3},
pmid = {40490500}
}
@article{lin278535,
title = {Probiotic-induced enrichment of Adlercreutzia equolifaciens increases gut microbiome wellness index and maps to lower host blood glucose levels.},
author = {Zhang Z, Yang Z, Lin S, Jiang S, Zhou X, Li J, Lu W, Zhang J.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2520407},
pmid = {40515809}
}
@article{lin278448,
title = {Gut microbiota in regulatory T cell generation and function: mechanisms and health implications.},
author = {Sharma A, Sharma G, Im SH.},
journal = {Gut Microbes},
year = {2025},
doi = {10.1080/19490976.2025.2516702},
pmid = {40517372}
}
@article{lin278526,
title = {Microbiome multi-omics analysis reveals novel biomarkers and mechanisms linked with CD etiopathology.},
author = {Serrano-Gomez G, Yanez F, Soler Z, Pons-Tarin M, Mayorga L, Herrera-deGuise C, Borruel N, Rodriguez-Sinovas A, Consegal M, Manjon I, Vega-Abellaneda S, Manichanh C.},
journal = {Biomark Res},
year = {2025},
doi = {10.1186/s40364-025-00802-1},
pmid = {40524271}
}
@article{lin278431,
title = {Genome-based reclassification of Blautia coccoides (Kaneuchi et al. 1976) Liu et al. 2008 as a later heterotypic synonym of Blautia producta (Prévot 1941) Liu et al. 2008.},
author = {Fatahi-Bafghi M.},
journal = {Int J Syst Evol Microbiol},
year = {2025},
doi = {10.1099/ijsem.0.006823},
pmid = {40600253}
}
@article{lin278517,
title = {Exploring the Role of Microglial Cells in the Gut-Brain Axis Communication: A Systematic Review.},
author = {Ortiz-Samur NS, Vijaya AK, Burokas A, Mela V.},
journal = {J Neurochem},
year = {2025},
doi = {10.1111/jnc.70154},
pmid = {40662222}
}
@article{lin278545,
title = {Lacticaseibacillus paracasei Glu-07: A Promising Probiotic Candidate for the Management of Type 2 Diabetes Mellitus.},
author = {Xu W, Guan Y, Tian L, Fu Y, Zhang Y, Liu Y, Hu Y, Zhao B, Wu C.},
journal = {Curr Microbiol},
year = {2025},
doi = {10.1007/s00284-025-04391-y},
pmid = {40694135}
}
@article{lin278546,
title = {The dysbiosis of gut microbiota and dysregulation of metabolites in IgA nephropathy and membranous nephropathy.},
author = {Zhang L, Hu L, Tan L, Zhang Z, Chen M, Gan W, Chen L, Zou Y, Wang S, Pang Y, Fan Z, Liu J.},
journal = {Front Med (Lausanne)},
year = {2025},
doi = {10.3389/fmed.2025.1618947},
pmid = {40740937}
}
@article{lin278518,
title = {Changes in antioxidant capacity and gut microbiota in mice after intake of camel milk.},
author = {Wang J, Ren W, Liu S, Li Z, Zeng Y, Meng J, Yao X.},
journal = {Front Cell Infect Microbiol},
year = {2025},
doi = {10.3389/fcimb.2025.1621031},
pmid = {40969552}
}
@article{lin278489,
title = {Inter-kingdom lipid messengers sustain gut harmony.},
author = {Hou J, Song X.},
journal = {Cell Host Microbe},
year = {2025},
doi = {10.1016/j.chom.2025.09.003},
pmid = {41067217}
}
@article{lin278499,
title = {Lactobacillus rhamnosus Ameliorates Dyslipidemia and Liver Steatosis in a Rat Model Fed High-Fat Diet.},
author = {Liao YT, Huang J, Lin BR, Liang JT, Huang KW.},
journal = {Gastroenterol Res Pract},
year = {2025},
doi = {10.1155/grp/5540686},
pmid = {41122631}
}
@article{lin278534,
title = {A two-stage strategy for methanogenesis suppression and rapid acetogenic biofilm formation in microbial electrosynthesis.},
author = {Ferretti J, Zegers MAJ, Zeppilli M, Jourdin L.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1655259},
pmid = {41244698}
}