@article{lin39778,
title = {Parasutterella excrementihominis gen. nov., sp. nov., a member of the family Alcaligenaceae isolated from human faeces.},
author = {Nagai F, Morotomi M, Sakon H, Tanaka R},
journal = {Int J Syst Evol Microbiol},
year = {2009},
doi = {10.1099/ijs.0.002519-0},
pmid = {19542131}
}
@article{lin275217,
title = {Parasutterella secunda sp. nov., isolated from human faeces and proposal of Sutterellaceae fam. nov. in the order Burkholderiales.},
author = {Morotomi M, Nagai F, Watanabe Y.},
journal = {Int J Syst Evol Microbiol},
year = {2011},
doi = {10.1099/ijs.0.023556-0},
pmid = {20400667}
}
@article{lin275212,
title = {Microbial community analysis and identification of alternative host-specific fecal indicators in fecal and river water samples using pyrosequencing.},
author = {Jeong JY, Park HD, Lee KH, Weon HY, Ka JO.},
journal = {J Microbiol},
year = {2011},
doi = {10.1007/s12275-011-0530-6},
pmid = {21887641}
}
@article{lin275261,
title = {Gut bacterial profile in patients newly diagnosed with treatment-naïve Crohn's disease.},
author = {Ricanek P, Lothe SM, Frye SA, Rydning A, Vatn MH, Tonjum T.},
journal = {Clin Exp Gastroenterol},
year = {2012},
doi = {10.2147/ceg.s33858},
pmid = {23049264}
}
@article{lin275273,
title = {The tracrRNA and Cas9 families of type II CRISPR-Cas immunity systems.},
author = {Chylinski K, Le Rhun A, Charpentier E.},
journal = {RNA Biol},
year = {2013},
doi = {10.4161/rna.24321},
pmid = {23563642}
}
@article{lin275271,
title = {Fecal microbiota and metabolome of children with autism and pervasive developmental disorder not otherwise specified.},
author = {De Angelis M, Piccolo M, Vannini L, Siragusa S, De Giacomo A, Serrazzanetti DI, Cristofori F, Guerzoni ME, Gobbetti M, Francavilla R.},
journal = {PLoS One},
year = {2013},
doi = {10.1371/journal.pone.0076993},
pmid = {24130822}
}
@article{lin275234,
title = {Genomic evidence reveals the extreme diversity and wide distribution of the arsenic-related genes in Burkholderiales.},
author = {Li X, Zhang L, Wang G.},
journal = {PLoS One},
year = {2014},
doi = {10.1371/journal.pone.0092236},
pmid = {24632831}
}
@article{lin275192,
title = {Recent Origin of the Methacrylate Redox System in Geobacter sulfurreducens AM-1 through Horizontal Gene Transfer.},
author = {Arkhipova OV, Meer MV, Mikoulinskaia GV, Zakharova MV, Galushko AS, Akimenko VK, Kondrashov FA.},
journal = {PLoS One},
year = {2015},
doi = {10.1371/journal.pone.0125888},
pmid = {25962149}
}
@article{lin275274,
title = {Proteomic indicators of oxidation and hydration state in colorectal cancer.},
author = {Dick JM.},
journal = {PeerJ},
year = {2016},
doi = {10.7717/peerj.2238},
pmid = {27547546}
}
@article{lin275272,
title = {The impact of sequence database choice on metaproteomic results in gut microbiota studies.},
author = {Tanca A, Palomba A, Fraumene C, Pagnozzi D, Manghina V, Deligios M, Muth T, Rapp E, Martens L, Addis MF, Uzzau S.},
journal = {Microbiome},
year = {2016},
doi = {10.1186/s40168-016-0196-8},
pmid = {27671352}
}
@article{lin275265,
title = {Evolutionary biologic changes of gut microbiota in an 'adenoma-carcinoma sequence' mouse colorectal cancer model induced by 1, 2-Dimethylhydrazine.},
author = {Sun T, Liu S, Zhou Y, Yao Z, Zhang D, Cao S, Wei Z, Tan B, Li Y, Lian Z, Wang S.},
journal = {Oncotarget},
year = {2017},
doi = {10.18632/oncotarget.13443},
pmid = {27880935}
}
@article{lin275241,
title = {New Arsenate Reductase Gene (arrA) PCR Primers for Diversity Assessment and Quantification in Environmental Samples.},
author = {Mirza BS, Sorensen DL, Dupont RR, McLean JE.},
journal = {Appl Environ Microbiol},
year = {2017},
doi = {10.1128/aem.02725-16},
pmid = {27913413}
}
@article{lin275268,
title = {Distinct Microbiome-Neuroimmune Signatures Correlate With Functional Abdominal Pain in Children With Autism Spectrum Disorder.},
author = {Luna RA, Oezguen N, Balderas M, Venkatachalam A, Runge JK, Versalovic J, Veenstra-VanderWeele J, Anderson GM, Savidge T, Williams KC.},
journal = {Cell Mol Gastroenterol Hepatol},
year = {2017},
doi = {10.1016/j.jcmgh.2016.11.008},
pmid = {28275689}
}
@article{lin275228,
title = {Lactobacillus casei Zhang and vitamin K2 prevent intestinal tumorigenesis in mice via adiponectin-elevated different signaling pathways.},
author = {Zhang Y, Ma C, Zhao J, Xu H, Hou Q, Zhang H.},
journal = {Oncotarget},
year = {2017},
doi = {10.18632/oncotarget.15791},
pmid = {28445967}
}
@article{lin275155,
title = {Dakarella massiliensis gen. nov., sp. nov., strain ND3T: a new bacterial genus isolated from the female genital tract.},
author = {Dione N, Rathored J, Tomei E, Lagier JC, Khelaifia S, Robert C, Bretelle F, Raoult D, Fournier PE, Fenollar F.},
journal = {New Microbes New Infect},
year = {2017},
doi = {10.1016/j.nmni.2017.05.003},
pmid = {28603641}
}
@article{lin275245,
title = {Administration of two probiotic strains during early childhood does not affect the endogenous gut microbiota composition despite probiotic proliferation.},
author = {Laursen MF, Laursen RP, Larnkjaer A, Michaelsen KF, Bahl MI, Licht TR.},
journal = {BMC Microbiol},
year = {2017},
doi = {10.1186/s12866-017-1090-7},
pmid = {28818050}
}
@article{lin275262,
title = {Distinctive Gut Microbiota Is Associated with Diarrheagenic Escherichia coli Infections in Chilean Children.},
author = {Gallardo P, Izquierdo M, Vidal RM, Chamorro-Veloso N, Rossello-Mora R, O'Ryan M, Farfan MJ.},
journal = {Front Cell Infect Microbiol},
year = {2017},
doi = {10.3389/fcimb.2017.00424},
pmid = {29075617}
}
@article{lin275251,
title = {Meta-Analysis of Fecal Microbiota and Metabolites in Experimental Colitic Mice during the Inflammatory and Healing Phases.},
author = {Osaka T, Moriyama E, Arai S, Date Y, Yagi J, Kikuchi J, Tsuneda S.},
journal = {Nutrients},
year = {2017},
doi = {10.3390/nu9121329},
pmid = {29211010}
}
@article{lin275199,
title = {Influence of Intestinal Indigenous Microbiota on Intrafamilial Infection by Helicobacter pylori in Japan.},
author = {Osaki T, Zaman C, Yonezawa H, Lin Y, Okuda M, Nozaki E, Hojo F, Kurata S, Hanawa T, Kikuchi S, Kamiya S.},
journal = {Front Immunol},
year = {2018},
doi = {10.3389/fimmu.2018.00287},
pmid = {29515585}
}
@article{lin275257,
title = {Prebiotic Potential of Herbal Medicines Used in Digestive Health and Disease.},
author = {Peterson CT, Sharma V, Uchitel S, Denniston K, Chopra D, Mills PJ, Peterson SN.},
journal = {J Altern Complement Med},
year = {2018},
doi = {10.1089/acm.2017.0422},
pmid = {29565634}
}
@article{lin275259,
title = {Fecal Enterobacteriales enrichment is associated with increased in vivo intestinal permeability in humans.},
author = {Pedersen C, Ijaz UZ, Gallagher E, Horton F, Ellis RJ, Jaiyeola E, Duparc T, Russell-Jones D, Hinton P, Cani PD, La Ragione RM, Robertson MD.},
journal = {Physiol Rep},
year = {2018},
doi = {10.14814/phy2.13649},
pmid = {29611319}
}
@article{lin275256,
title = {Effects of Turmeric and Curcumin Dietary Supplementation on Human Gut Microbiota: A Double-Blind, Randomized, Placebo-Controlled Pilot Study.},
author = {Peterson CT, Vaughn AR, Sharma V, Chopra D, Mills PJ, Peterson SN, Sivamani RK.},
journal = {J Evid Based Integr Med},
year = {2018},
doi = {10.1177/2515690x18790725},
pmid = {30088420}
}
@article{lin275269,
title = {Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems.},
author = {Faure G, Shmakov SA, Makarova KS, Wolf YI, Crawley AB, Barrangou R, Koonin EV.},
journal = {RNA Biol},
year = {2019},
doi = {10.1080/15476286.2018.1493331},
pmid = {30103650}
}
@article{lin275264,
title = {Defining the role of Parasutterella, a previously uncharacterized member of the core gut microbiota.},
author = {Ju T, Kong JY, Stothard P, Willing BP.},
journal = {ISME J},
year = {2019},
doi = {10.1038/s41396-019-0364-5},
pmid = {30742017}
}
@article{lin275270,
title = {16S rRNA gene profiling and genome reconstruction reveal community metabolic interactions and prebiotic potential of medicinal herbs used in neurodegenerative disease and as nootropics.},
author = {Peterson CT, Sharma V, Iablokov SN, Albayrak L, Khanipov K, Uchitel S, Chopra D, Mills PJ, Fofanov Y, Rodionov DA, Peterson SN.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0213869},
pmid = {30889210}
}
@article{lin275260,
title = {High intensity interval training promotes total and visceral fat mass loss in obese Zucker rats without modulating gut microbiota.},
author = {Maillard F, Vazeille E, Sauvanet P, Sirvent P, Combaret L, Sourdrille A, Chavanelle V, Bonnet R, Otero YF, Delcros G, Barnich N, Boisseau N.},
journal = {PLoS One},
year = {2019},
doi = {10.1371/journal.pone.0214660},
pmid = {30964881}
}
@article{lin275141,
title = {Improving CRISPR-Cas9 Genome Editing Efficiency by Fusion with Chromatin-Modulating Peptides.},
author = {Ding X, Seebeck T, Feng Y, Jiang Y, Davis GD, Chen F.},
journal = {CRISPR J},
year = {2019},
doi = {10.1089/crispr.2018.0036},
pmid = {31021236}
}
@article{lin275209,
title = {Hypergravity disrupts murine intestinal microbiota.},
author = {Alauzet C, Cunat L, Wack M, Lozniewski A, Busby H, Agrinier N, Cailliez-Grimal C, Frippiat JP.},
journal = {Sci Rep},
year = {2019},
doi = {10.1038/s41598-019-45153-8},
pmid = {31253829}
}
@article{lin275252,
title = {Prebiotic-Induced Anti-tumor Immunity Attenuates Tumor Growth.},
author = {Li Y, Elmen L, Segota I, Xian Y, Tinoco R, Feng Y, Fujita Y, Segura Munoz RR, Schmaltz R, Bradley LM, Ramer-Tait A, Zarecki R, Long T, Peterson SN, Ronai ZA.},
journal = {Cell Rep},
year = {2020},
doi = {10.1016/j.celrep.2020.01.035},
pmid = {32049008}
}
@article{lin275267,
title = {A diet based on cured acorn-fed ham with oleic acid content promotes anti-inflammatory gut microbiota and prevents ulcerative colitis in an animal model.},
author = {Fernandez J, de la Fuente VG, Garcia MTF, Sanchez JG, Redondo BI, Villar CJ, Lombo F.},
journal = {Lipids Health Dis},
year = {2020},
doi = {10.1186/s12944-020-01205-x},
pmid = {32093685}
}
@article{lin275183,
title = {Gut Microbiota Alterations from Three-Strain Yogurt Formulation Treatments in Slow-Transit Constipation.},
author = {Li XR, Liu CJ, Tang XD, Zhang HM, Luo YY, Zhang L, Yang E.},
journal = {Can J Infect Dis Med Microbiol},
year = {2020},
doi = {10.1155/2020/4583973},
pmid = {32148595}
}
@article{lin275243,
title = {Potential interaction between timing of infant complementary feeding and breastfeeding duration in determination of early childhood gut microbiota composition and BMI.},
author = {Differding MK, Doyon M, Bouchard L, Perron P, Guerin R, Asselin C, Masse E, Hivert MF, Mueller NT.},
journal = {Pediatr Obes},
year = {2020},
doi = {10.1111/ijpo.12642},
pmid = {32351036}
}
@article{lin275177,
title = {Host genotype and exercise exhibit species-level selection for members of the gut bacterial communities in the mouse digestive system.},
author = {Dowden RA, McGuinness LR, Wisniewski PJ, Campbell SC, Guers JJ, Oydanich M, Vatner SF, Haggblom MM, Kerkhof LJ.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-65740-4},
pmid = {32488198}
}
@article{lin275172,
title = {Differences in Gut Microbiome Composition between Senior Orienteering Athletes and Community-Dwelling Older Adults.},
author = {Fart F, Rajan SK, Wall R, Rangel I, Ganda-Mall JP, Tingo L, Brummer RJ, Repsilber D, Schoultz I, Lindqvist CM.},
journal = {Nutrients},
year = {2020},
doi = {10.3390/nu12092610},
pmid = {32867153}
}
@article{lin275157,
title = {Unique maternal immune and functional microbial profiles during prenatal stress.},
author = {Antonson AM, Evans MV, Galley JD, Chen HJ, Rajasekera TA, Lammers SM, Hale VL, Bailey MT, Gur TL.},
journal = {Sci Rep},
year = {2020},
doi = {10.1038/s41598-020-77265-x},
pmid = {33219314}
}
@article{lin275191,
title = {Stress Response of Mesosutterella multiformis Mediated by Nitrate Reduction.},
author = {Ikeyama N, Ohkuma M, Sakamoto M.},
journal = {Microorganisms},
year = {2020},
doi = {10.3390/microorganisms8122003},
pmid = {33333944}
}
@article{lin275247,
title = {A Uniform Computational Approach Improved on Existing Pipelines to Reveal Microbiome Biomarkers of Nonresponse to Immune Checkpoint Inhibitors.},
author = {Shaikh FY, White JR, Gills JJ, Hakozaki T, Richard C, Routy B, Okuma Y, Usyk M, Pandey A, Weber JS, Ahn J, Lipson EJ, Naidoo J, Pardoll DM, Sears CL.},
journal = {Clin Cancer Res},
year = {2021},
doi = {10.1158/1078-0432.ccr-20-4834},
pmid = {33593881}
}
@article{lin275258,
title = {Integrated gut virome and bacteriome dynamics in COVID-19 patients.},
author = {Cao J, Wang C, Zhang Y, Lei G, Xu K, Zhao N, Lu J, Meng F, Yu L, Yan J, Bai C, Zhang S, Zhang N, Gong Y, Bi Y, Shi Y, Chen Z, Dai L, Wang J, Yang P.},
journal = {Gut Microbes},
year = {2021},
doi = {10.1080/19490976.2021.1887722},
pmid = {33678150}
}
@article{lin275238,
title = {Influence of the densities and nutritional components of bacterial colonies on the culture-enriched gut bacterial community structure.},
author = {Gu Y, Yan D, Wu M, Li M, Li P, Wang J, Chang Y, Yang F, Di S, Ni S, Yang M, Liu J.},
journal = {AMB Express},
year = {2021},
doi = {10.1186/s13568-021-01240-6},
pmid = {34057622}
}
@article{lin275211,
title = {Short- and Branched-Chain Fatty Acids as Fecal Markers for Microbiota Activity in Vegans and Omnivores.},
author = {Trefflich I, Dietrich S, Braune A, Abraham K, Weikert C.},
journal = {Nutrients},
year = {2021},
doi = {10.3390/nu13061808},
pmid = {34073495}
}
@article{lin275206,
title = {Cinnamaldehyde Improves Metabolic Functions in Streptozotocin-Induced Diabetic Mice by Regulating Gut Microbiota.},
author = {Zhao H, Wu H, Duan M, Liu R, Zhu Q, Zhang K, Wang L.},
journal = {Drug Des Devel Ther},
year = {2021},
doi = {10.2147/dddt.s288011},
pmid = {34103897}
}
@article{lin275195,
title = {Differences in Compositions of Oral and Fecal Microbiota between Patients with Obesity and Controls.},
author = {Stefura T, Zapala B, Gosiewski T, Skomarovska O, Dudek A, Pedziwiatr M, Major P.},
journal = {Medicina (Kaunas)},
year = {2021},
doi = {10.3390/medicina57070678},
pmid = {34209298}
}
@article{lin275176,
title = {Prenatal stress-induced disruptions in microbial and host tryptophan metabolism and transport.},
author = {Galley JD, Chen HJ, Antonson AM, Gur TL.},
journal = {Behav Brain Res},
year = {2021},
doi = {10.1016/j.bbr.2021.113471},
pmid = {34280459}
}
@article{lin275186,
title = {Oral iron supplementation after antibiotic exposure induces a deleterious recovery of the gut microbiota.},
author = {Cuisiniere T, Calve A, Fragoso G, Oliero M, Hajjar R, Gonzalez E, Santos MM.},
journal = {BMC Microbiol},
year = {2021},
doi = {10.1186/s12866-021-02320-0},
pmid = {34583649}
}
@article{lin275227,
title = {Lactobacillus casei Zhang exerts probiotic effects to antibiotic-treated rats.},
author = {Yao G, Cao C, Zhang M, Kwok LY, Zhang H, Zhang W.},
journal = {Comput Struct Biotechnol J},
year = {2021},
doi = {10.1016/j.csbj.2021.10.026},
pmid = {34815833}
}
@article{lin275255,
title = {Alterations of Gut Microbiome and Serum Metabolome in Coronary Artery Disease Patients Complicated With Non-alcoholic Fatty Liver Disease Are Associated With Adverse Cardiovascular Outcomes.},
author = {Hu X, Zhou R, Li H, Zhao X, Sun Y, Fan Y, Zhang S.},
journal = {Front Cardiovasc Med},
year = {2021},
doi = {10.3389/fcvm.2021.805812},
pmid = {35047580}
}
@article{lin275266,
title = {Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer.},
author = {Derosa L, Routy B, Thomas AM, Iebba V, Zalcman G, Friard S, Mazieres J, Audigier-Valette C, Moro-Sibilot D, Goldwasser F, Silva CAC, Terrisse S, Bonvalet M, Scherpereel A, Pegliasco H, Richard C, Ghiringhelli F, Elkrief A, Desilets A, Blanc-Durand F, Cumbo F, Blanco A, Boidot R, Chevrier S, Daillere R, Kroemer G, Alla L, Pons N, Le Chatelier E, Galleron N, Roume H, Dubuisson A, Bouchard N, Messaoudene M, Drubay D, Deutsch E, Barlesi F, Planchard D, Segata N, Martinez S, Zitvogel L, Soria JC, Besse B.},
journal = {Nat Med},
year = {2022},
doi = {10.1038/s41591-021-01655-5},
pmid = {35115705}
}
@article{lin275240,
title = {Human Fecal Microbiota Transplantation Reduces the Susceptibility to Dextran Sulfate Sodium-Induced Germ-Free Mouse Colitis.},
author = {Yang Y, Zheng X, Wang Y, Tan X, Zou H, Feng S, Zhang H, Zhang Z, He J, Cui B, Zhang X, Wu Z, Dong M, Cheng W, Tao S, Wei H.},
journal = {Front Immunol},
year = {2022},
doi = {10.3389/fimmu.2022.836542},
pmid = {35237276}
}
@article{lin275246,
title = {The CIAMIB: a Large and Metabolically Diverse Collection of Inflammation-Associated Bacteria from the Murine Gut.},
author = {Wong EO, Brownlie EJE, Ng KM, Kathirgamanathan S, Yu FB, Merrill BD, Huang KC, Martin A, Tropini C, Navarre WW.},
journal = {mBio},
year = {2022},
doi = {10.1128/mbio.02949-21},
pmid = {35266814}
}
@article{lin275254,
title = {Btla signaling in conventional and regulatory lymphocytes coordinately tempers humoral immunity in the intestinal mucosa.},
author = {Stienne C, Virgen-Slane R, Elmen L, Veny M, Huang S, Nguyen J, Chappell E, Balmert MO, Shui JW, Hurchla MA, Kronenberg M, Peterson SN, Murphy KM, Ware CF, Sedy JR.},
journal = {Cell Rep},
year = {2022},
doi = {10.1016/j.celrep.2022.110553},
pmid = {35320716}
}
@article{lin275174,
title = {Short-Term Metformin Treatment Enriches Bacteroides dorei in an Obese Liver Steatosis Zucker Rat Model.},
author = {Robeson MS, Manna K, Randolph C, Byrum S, Hakkak R.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.834776},
pmid = {35432282}
}
@article{lin275131,
title = {A dietary carbohydrate - gut Parasutterella - human fatty acid biosynthesis metabolic axis in obesity and type 2 diabetes.},
author = {Henneke L, Schlicht K, Andreani NA, Hollstein T, Demetrowitsch T, Knappe C, Hartmann K, Jensen-Kroll J, Rohmann N, Pohlschneider D, Geisler C, Schulte DM, Settgast U, Turk K, Zimmermann J, Kaleta C, Baines JF, Shearer J, Shah S, Shen-Tu G, Schwarz K, Franke A, Schreiber S, Laudes M.},
journal = {Gut Microbes},
year = {2022},
doi = {10.1080/19490976.2022.2057778},
pmid = {35435797}
}
@article{lin275214,
title = {Gut Microbiota Targeted Approach in the Management of Chronic Liver Diseases.},
author = {Liu J, Yang D, Wang X, Asare PT, Zhang Q, Na L, Shao L.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.774335},
pmid = {35444959}
}
@article{lin275193,
title = {Short-chain fatty acids promote the effect of environmental signals on the gut microbiome and metabolome in mice.},
author = {Marrocco F, Delli Carpini M, Garofalo S, Giampaoli O, De Felice E, Di Castro MA, Maggi L, Scavizzi F, Raspa M, Marini F, Tomassini A, Nicolosi R, Cason C, Trettel F, Miccheli A, Iebba V, D'Alessandro G, Limatola C.},
journal = {Commun Biol},
year = {2022},
doi = {10.1038/s42003-022-03468-9},
pmid = {35641653}
}
@article{lin275197,
title = {Tetragenococcus halophilus Alleviates Intestinal Inflammation in Mice by Altering Gut Microbiota and Regulating Dendritic Cell Activation via CD83.},
author = {Islam SMS, Ryu HM, Sohn S.},
journal = {Cells},
year = {2022},
doi = {10.3390/cells11121903},
pmid = {35741032}
}
@article{lin275242,
title = {Genital Microbiota of Women From Six Ethnic Groups With and Without Human Papillomavirus Infection in Shangri-La, China.},
author = {Liu CJ, Xiao WY, Fang JF, Dong YH, Ye KF, He MP, Wang YS, Li X, Zhao ZM, Yuan T, Zhao T, He CY, Zhang SM, Yang E, Wu XM, Li XR.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.935068},
pmid = {35873154}
}
@article{lin275248,
title = {Longitudinal fecal microbiome and metabolite data demonstrate rapid shifts and subsequent stabilization after an abrupt dietary change in healthy adult dogs.},
author = {Lin CY, Jha AR, Oba PM, Yotis SM, Shmalberg J, Honaker RW, Swanson KS.},
journal = {Anim Microbiome},
year = {2022},
doi = {10.1186/s42523-022-00194-9},
pmid = {35915514}
}
@article{lin275203,
title = {The Composition of Placental Microbiota and Its Association With Adverse Pregnancy Outcomes.},
author = {La X, Wang Y, Xiong X, Shen L, Chen W, Zhang L, Yang F, Cai X, Zheng H, Jiang H.},
journal = {Front Microbiol},
year = {2022},
doi = {10.3389/fmicb.2022.911852},
pmid = {35923403}
}
@article{lin275233,
title = {Computational approach to modeling microbiome landscapes associated with chronic human disease progression.},
author = {Li L, Sohn J, Genco RJ, Wactawski-Wende J, Goodison S, Diaz PI, Sun Y.},
journal = {PLoS Comput Biol},
year = {2022},
doi = {10.1371/journal.pcbi.1010373},
pmid = {35926003}
}
@article{lin275210,
title = {Alterations in the vaginal microbiota of patients with preterm premature rupture of membranes.},
author = {Yan C, Hong F, Xin G, Duan S, Deng X, Xu Y.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.858732},
pmid = {36004326}
}
@article{lin275229,
title = {The Effects of Physical Activity on the Gut Microbiota and the Gut-Brain Axis in Preclinical and Human Models: A Narrative Review.},
author = {Cataldi S, Poli L, Sahin FN, Patti A, Santacroce L, Bianco A, Greco G, Ghinassi B, Di Baldassarre A, Fischetti F.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14163293},
pmid = {36014798}
}
@article{lin275208,
title = {The science behind TCM and Gut microbiota interaction-their combinatorial approach holds promising therapeutic applications.},
author = {Xia W, Liu B, Tang S, Yasir M, Khan I.},
journal = {Front Cell Infect Microbiol},
year = {2022},
doi = {10.3389/fcimb.2022.875513},
pmid = {36176581}
}
@article{lin275230,
title = {Gut microbiota is associated with differential metabolic characteristics: A study on a defined cohort of Africans and Chinese.},
author = {Nizigiyimana P, Xu B, Liu L, Luo L, Liu T, Jiang M, Liu Z, Li C, Luo X, Lei M.},
journal = {Front Endocrinol (Lausanne)},
year = {2022},
doi = {10.3389/fendo.2022.942383},
pmid = {36246928}
}
@article{lin275196,
title = {The effect of modulation of gut microbiome profile on radiation-induced carcinogenesis and survival.},
author = {Cook JA, Sowers AL, Choudhuri R, Gadisetti C, Edmondson EF, Gohain S, Krishna MC, Mitchell JB.},
journal = {J Radiat Res},
year = {2023},
doi = {10.1093/jrr/rrac062},
pmid = {36253079}
}
@article{lin275222,
title = {Cftr deletion in mouse epithelial and immune cells differentially influence the intestinal microbiota.},
author = {Scull CE, Luo M, Jennings S, Taylor CM, Wang G.},
journal = {Commun Biol},
year = {2022},
doi = {10.1038/s42003-022-04101-5},
pmid = {36289287}
}
@article{lin275236,
title = {Mucin-degrading gut commensals isolated from healthy faecal donor suppress intestinal epithelial inflammation and regulate tight junction barrier function.},
author = {Pan M, Barua N, Ip M.},
journal = {Front Immunol},
year = {2022},
doi = {10.3389/fimmu.2022.1021094},
pmid = {36311778}
}
@article{lin275171,
title = {Dietary Protein and Fiber Affect Gut Microbiome and Treg/Th17 Commitment in Chronic Kidney Disease Mice.},
author = {Serrano M, Srivastava A, Buck G, Zhu B, Edupuganti L, Adegbulugbe E, Shankaranarayanan D, Kopp JB, Raj DS.},
journal = {Am J Nephrol},
year = {2022},
doi = {10.1159/000526957},
pmid = {36349783}
}
@article{lin275139,
title = {The Association between Gut Microbiome and Pregnancy-Induced Hypertension: A Nested Case-Control Study.},
author = {Lin H, Chen J, Ma S, An R, Li X, Tan H.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14214582},
pmid = {36364844}
}
@article{lin275158,
title = {Microbial profiling of peri-implantitis compared to the periodontal microbiota in health and disease using 16S rRNA sequencing.},
author = {Kim HJ, Ahn DH, Yu Y, Han H, Kim SY, Joo JY, Chung J, Na HS, Lee JY.},
journal = {J Periodontal Implant Sci},
year = {2023},
doi = {10.5051/jpis.2202080104},
pmid = {36468472}
}
@article{lin275263,
title = {Impact of international travel and diarrhea on gut microbiome and resistome dynamics.},
author = {Boolchandani M, Blake KS, Tilley DH, Cabada MM, Schwartz DJ, Patel S, Morales ML, Meza R, Soto G, Isidean SD, Porter CK, Simons MP, Dantas G.},
journal = {Nat Commun},
year = {2022},
doi = {10.1038/s41467-022-34862-w},
pmid = {36470885}
}
@article{lin275215,
title = {Reproducible and opposing gut microbiome signatures distinguish autoimmune diseases and cancers: a systematic review and meta-analysis.},
author = {Islam MZ, Tran M, Xu T, Tierney BT, Patel C, Kostic AD.},
journal = {Microbiome},
year = {2022},
doi = {10.1186/s40168-022-01373-1},
pmid = {36482486}
}
@article{lin275164,
title = {Snapshot into the Type-2-Diabetes-Associated Microbiome of a Romanian Cohort.},
author = {Gradisteanu Pircalabioru G, Chifiriuc MC, Picu A, Petcu LM, Trandafir M, Savu O.},
journal = {Int J Mol Sci},
year = {2022},
doi = {10.3390/ijms232315023},
pmid = {36499348}
}
@article{lin275146,
title = {Heat-Killed Bifidobacterium bifidum B1628 May Alleviate Dextran Sulfate Sodium-Induced Colitis in Mice, and the Anti-Inflammatory Effect Is Associated with Gut Microbiota Modulation.},
author = {Feng C, Zhang W, Zhang T, He Q, Kwok LY, Tan Y, Zhang H.},
journal = {Nutrients},
year = {2022},
doi = {10.3390/nu14245233},
pmid = {36558391}
}
@article{lin275205,
title = {The gut-microbiota-brain axis in a Spanish population in the aftermath of the COVID-19 pandemic: microbiota composition linked to anxiety, trauma, and depression profiles.},
author = {Malan-Muller S, Valles-Colomer M, Palomo T, Leza JC.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2022.2162306},
pmid = {36651663}
}
@article{lin275218,
title = {Consistent Stool Metagenomic Biomarkers Associated with the Response To Melanoma Immunotherapy.},
author = {Olekhnovich EI, Ivanov AB, Babkina AA, Sokolov AA, Ulyantsev VI, Fedorov DE, Ilina EN.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.01023-22},
pmid = {36809182}
}
@article{lin275225,
title = {Gamma-delta T cells modulate the microbiota and fecal micro-RNAs to maintain mucosal tolerance.},
author = {Rezende RM, Cox LM, Moreira TG, Liu S, Boulenouar S, Dhang F, LeServe DS, Nakagaki BN, Lopes JR, Tatematsu BK, Lemos L, Mayrink J, Lobo ELC, Guo L, Oliveira MG, Kuhn C, Weiner HL.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01478-1},
pmid = {36814316}
}
@article{lin275180,
title = {Microbiome Dysbiosis Shows Strong Association of Gut-Derived Altered Metabolomic Profile in Gulf War Chronic Multisymptom Illness Symptom Persistence Following Western Diet Feeding and Development of Obesity.},
author = {Bose D, Stebliankin V, Cickovski T, Saha P, Trivedi A, Roy S, More M, Tuteja A, Mathee K, Narasimhan G, Chatterjee S.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms24044245},
pmid = {36835663}
}
@article{lin275126,
title = {Anti-Hyperuricemic Effect of Anserine Based on the Gut-Kidney Axis: Integrated Analysis of Metagenomics and Metabolomics.},
author = {Halimulati M, Wang R, Aihemaitijiang S, Huang X, Ye C, Zhang Z, Li L, Zhu W, Zhang Z, He L.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15040969},
pmid = {36839325}
}
@article{lin275135,
title = {The gut microbiome in social anxiety disorder: evidence of altered composition and function.},
author = {Butler MI, Bastiaanssen TFS, Long-Smith C, Morkl S, Berding K, Ritz NL, Strain C, Patangia D, Patel S, Stanton C, O'Mahony SM, Cryan JF, Clarke G, Dinan TG.},
journal = {Transl Psychiatry},
year = {2023},
doi = {10.1038/s41398-023-02325-5},
pmid = {36941248}
}
@article{lin275224,
title = {Comprehensive Functional Annotation of Metagenomes and Microbial Genomes Using a Deep Learning-Based Method.},
author = {Maranga M, Szczerbiak P, Bezshapkin V, Gligorijevic V, Chandler C, Bonneau R, Xavier RJ, Vatanen T, Kosciolek T.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.01178-22},
pmid = {37010293}
}
@article{lin275226,
title = {Gut microbiota-mediated associations of green tea and catechin intakes with glucose metabolism in individuals without type 2 diabetes mellitus: a four-season observational study with mediation analysis.},
author = {Ito A, Matsui Y, Takeshita M, Katashima M, Goto C, Kuriki K.},
journal = {Arch Microbiol},
year = {2023},
doi = {10.1007/s00203-023-03522-y},
pmid = {37059897}
}
@article{lin275156,
title = {Microbiome Alterations Driven by Trypanosoma cruzi Infection in Two Disjunctive Murine Models.},
author = {Castaneda S, Munoz M, Hotez PJ, Bottazzi ME, Paniz-Mondolfi AE, Jones KM, Mejia R, Poveda C, Ramirez JD.},
journal = {Microbiol Spectr},
year = {2023},
doi = {10.1128/spectrum.00199-23},
pmid = {37140369}
}
@article{lin275185,
title = {Combination of Lactobacillus fermentum NS9 and aronia anthocyanidin extract alleviates sodium iodate-induced retina degeneration.},
author = {Xing Y, Liang S, Zhang L, Ni H, Zhang X, Wang J, Yang L, Song S, Li HH, Jia C, Jin F.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-34219-3},
pmid = {37225720}
}
@article{lin275239,
title = {Zearalenone-14-glucoside specifically promotes dysplasia of Gut-Associated Lymphoid Tissue: A natural product for constructing intestinal nodular lymphatic hyperplasia model.},
author = {Ruan H, Wang Y, Zhang J, Huang Y, Yang Y, Wu C, Guo M, Luo J, Yang M.},
journal = {J Adv Res},
year = {2023},
doi = {10.1016/j.jare.2023.05.006},
pmid = {37230382}
}
@article{lin275140,
title = {Immunomodulatory Role of Vitamin D on Gut Microbiome in Children.},
author = {Tabassum A, Ali A, Zahedi FD, Ismail NAS.},
journal = {Biomedicines},
year = {2023},
doi = {10.3390/biomedicines11051441},
pmid = {37239112}
}
@article{lin275151,
title = {Gut microbiome determines therapeutic effects of OCA on NAFLD by modulating bile acid metabolism.},
author = {Liu J, Sun J, Yu J, Chen H, Zhang D, Zhang T, Ma Y, Zou C, Zhang Z, Ma L, Yu X.},
journal = {NPJ Biofilms Microbiomes},
year = {2023},
doi = {10.1038/s41522-023-00399-z},
pmid = {37258543}
}
@article{lin275249,
title = {Gut OncoMicrobiome Signatures (GOMS) as next-generation biomarkers for cancer immunotherapy.},
author = {Thomas AM, Fidelle M, Routy B, Kroemer G, Wargo JA, Segata N, Zitvogel L.},
journal = {Nat Rev Clin Oncol},
year = {2023},
doi = {10.1038/s41571-023-00785-8},
pmid = {37365438}
}
@article{lin275204,
title = {The Effect of Indole-3-Lactic Acid from Lactiplantibacillus plantarum ZJ316 on Human Intestinal Microbiota In Vitro.},
author = {Zhou Q, Xie Z, Wu D, Liu L, Shi Y, Li P, Gu Q.},
journal = {Foods},
year = {2022},
doi = {10.3390/foods11203302},
pmid = {37431049}
}
@article{lin275235,
title = {Targeting gut microbiota-derived kynurenine to predict and protect the remodeling of the pressure-overloaded young heart.},
author = {Shi B, Zhang X, Song Z, Dai Z, Luo K, Chen B, Zhou Z, Cui Y, Feng B, Zhu Z, Zheng J, Zhang H, He X.},
journal = {Sci Adv},
year = {2023},
doi = {10.1126/sciadv.adg7417},
pmid = {37450589}
}
@article{lin275207,
title = {Formyl peptide receptor-1 (FPR1) represses intestinal oncogenesis.},
author = {Le Naour J, Montegut L, Pan Y, Scuderi SA, Cordier P, Joseph A, Sauvat A, Iebba V, Paillet J, Ferrere G, Brechard L, Mulot C, Dubourg G, Zitvogel L, Pol JG, Vacchelli E, Puig PL, Kroemer G.},
journal = {Oncoimmunology},
year = {2023},
doi = {10.1080/2162402x.2023.2237354},
pmid = {37492227}
}
@article{lin275137,
title = {Identification of the Intestinal Microbes Associated with Locomotion.},
author = {Ahn JS, Choi YJ, Kim HB, Chung HJ, Hong ST.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms241411392},
pmid = {37511151}
}
@article{lin275194,
title = {Association between gut microbiota and gastrointestinal cancer: a two-sample bi-directional Mendelian randomization study.},
author = {Su Q, Jin C, Bo Z, Yang Y, Wang J, Wang J, Zhou J, Chen Y, Zeng H, Chen G, Wang Y.},
journal = {Front Microbiol},
year = {2023},
doi = {10.3389/fmicb.2023.1181328},
pmid = {37533836}
}
@article{lin275223,
title = {Identification of robust and generalizable biomarkers for microbiome-based stratification in lifestyle interventions.},
author = {Chen J, Siliceo SL, Ni Y, Nielsen HB, Xu A, Panagiotou G.},
journal = {Microbiome},
year = {2023},
doi = {10.1186/s40168-023-01604-z},
pmid = {37553697}
}
@article{lin275200,
title = {The contribution of maternal oral, vaginal, and gut microbiota to the developing offspring gut.},
author = {Russell AL, McAdams ZL, Donovan E, Seilhamer N, Siegrist M, Franklin CL, Ericsson AC.},
journal = {Sci Rep},
year = {2023},
doi = {10.1038/s41598-023-40703-7},
pmid = {37608207}
}
@article{lin275153,
title = {Multi-omics analysis revealing the interplay between gut microbiome and the host following opioid use.},
author = {Kolli U, Jalodia R, Moidunny S, Singh PK, Ban Y, Tao J, Cantu GN, Valdes E, Ramakrishnan S, Roy S.},
journal = {Gut Microbes},
year = {2023},
doi = {10.1080/19490976.2023.2246184},
pmid = {37610102}
}
@article{lin275198,
title = {Exploring Gut Microbiota and the Influence of Physical Activity Interventions on Overweight and Obese Children and Adolescents: A Systematic Review.},
author = {Morgado MC, Sousa M, Coelho AB, Costa JA, Seabra A.},
journal = {Healthcare (Basel)},
year = {2023},
doi = {10.3390/healthcare11172459},
pmid = {37685493}
}
@article{lin275181,
title = {Steamed broccoli sprouts alleviate DSS-induced inflammation and retain gut microbial biogeography in mice.},
author = {Holman JM, Colucci L, Baudewyns D, Balkan J, Hunt T, Hunt B, Kinney M, Holcomb L, Stratigakis A, Chen G, Moses PL, Mawe GM, Zhang T, Li Y, Ishaq SL.},
journal = {mSystems},
year = {2023},
doi = {10.1128/msystems.00532-23},
pmid = {37702510}
}
@article{lin275124,
title = {Gut microbiome association with brain imaging markers, APOE genotype, calcium and vegetable intakes, and obesity in healthy aging adults.},
author = {Hammond TC, Green SJ, Jacobs Y, Chlipala GE, Xing X, Heil S, Chen A, Aware C, Flemister A, Stromberg A, Balchandani P, Lin AL.},
journal = {Front Aging Neurosci},
year = {2023},
doi = {10.3389/fnagi.2023.1227203},
pmid = {37736325}
}
@article{lin275142,
title = {Polysaccharide from Smilax glabra Roxb Mitigates Intestinal Mucosal Damage by Therapeutically Restoring the Interactions between Gut Microbiota and Innate Immune Functions.},
author = {Abaidullah M, La S, Liu M, Liu B, Cui Y, Wang Z, Sun H, Ma S, Shi Y.},
journal = {Nutrients},
year = {2023},
doi = {10.3390/nu15194102},
pmid = {37836386}
}
@article{lin275115,
title = {Ginkgo biloba extract protects against depression-like behavior in mice through regulating gut microbial bile acid metabolism.},
author = {Zhou J, Fan Q, Cai X, Zhang Y, Hou Y, Cao S, Li Z, Feng M, Wang Q, Zhang J, Wang G, Zheng X, Hao H.},
journal = {Chin J Nat Med},
year = {2023},
doi = {10.1016/s1875-5364(23)60496-0},
pmid = {37879793}
}
@article{lin275202,
title = {Modulation of the Gut Microbiota by the Plantaricin-Producing Lactiplantibacillus plantarum D13, Analysed in the DSS-Induced Colitis Mouse Model.},
author = {Butorac K, Novak J, Banic M, Lebos Pavunc A, Culjak N, Orsolic N, Odeh D, Perica J, Suskovic J, Kos B.},
journal = {Int J Mol Sci},
year = {2023},
doi = {10.3390/ijms242015322},
pmid = {37895001}
}
@article{lin275163,
title = {Oral exposure to Staphylococcus aureus enterotoxin B could promote the Ovalbumin-induced food allergy by enhancing the activation of DCs and T cells.},
author = {Yuan J, Tong P, Meng X, Wu Y, Li X, Gao J, Chen H.},
journal = {Front Immunol},
year = {2023},
doi = {10.3389/fimmu.2023.1250458},
pmid = {37908363}
}
@article{lin275129,
title = {Sodium butyrate alleviates R97-116 peptide-induced myasthenia gravis in mice by improving the gut microbiota and modulating immune response.},
author = {Sun J, Chen J, Xie Q, Sun M, Zhang W, Wang H, Liu N, Wang Q, Wang M.},
journal = {J Inflamm (Lond)},
year = {2023},
doi = {10.1186/s12950-023-00363-w},
pmid = {37924056}
}
@article{lin275221,
title = {Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children.},
author = {Bonham KS, Fahur Bottino G, McCann SH, Beauchemin J, Weisse E, Barry F, Cano Lorente R, RESONANCE Consortium, Huttenhower C, Bruchhage M, D'Sa V, Deoni S, Klepac-Ceraj V.},
journal = {Sci Adv},
year = {2023},
doi = {10.1126/sciadv.adi0497},
pmid = {38134274}
}
@article{lin275118,
title = {Potential roles of the interactions between gut microbiota and metabolites in LPS-induced intrauterine inflammation (IUI) and associated preterm birth (PTB).},
author = {Jia B, Tang L, Liu H, Chen W, Chen Q, Zhong M, Yin A.},
journal = {J Transl Med},
year = {2024},
doi = {10.1186/s12967-023-04603-8},
pmid = {38167140}
}
@article{lin275168,
title = {Early microbial intervention reshapes phenotypes of newborn Bos taurus through metabolic regulations.},
author = {Shen Y, Li Y, Wu T, Dong Q, Deng Q, Liu L, Guo Y, Cao Y, Li Q, Shi J, Zou H, Jiao Y, Ding L, Li J, Gao Y, Hu S, Wang Y, Chen L.},
journal = {Gigascience},
year = {2024},
doi = {10.1093/gigascience/giad118},
pmid = {38217406}
}
@article{lin275154,
title = {Unveiling the connection between gut microbiome and metabolic health in individuals with chronic spinal cord injury.},
author = {Li J, Barnes S, Lefkowitz E, Yarar-Fisher C.},
journal = {Physiol Genomics},
year = {2024},
doi = {10.1152/physiolgenomics.00107.2023},
pmid = {38344780}
}
@article{lin275253,
title = {Sodium oligomannate alters gut microbiota, reduces cerebral amyloidosis and reactive microglia in a sex-specific manner.},
author = {Bosch ME, Dodiya HB, Michalkiewicz J, Lee C, Shaik SM, Weigle IQ, Zhang C, Osborn J, Nambiar A, Patel P, Parhizkar S, Zhang X, Laury ML, Mondal P, Gomm A, Schipma MJ, Mallah D, Butovsky O, Chang EB, Tanzi RE, Gilbert JA, Holtzman DM, Sisodia SS.},
journal = {Mol Neurodegener},
year = {2024},
doi = {10.1186/s13024-023-00700-w},
pmid = {38365827}
}
@article{lin275187,
title = {Fibroblast Growth Factor 19 Alters Bile Acids to Induce Dysbiosis in Mice With Alcohol-Induced Liver Disease.},
author = {Ferrell JM, Dilts M, Pokhrel S, Stahl Z, Boehme S, Wang X, Chiang JYL.},
journal = {Cell Mol Gastroenterol Hepatol},
year = {2024},
doi = {10.1016/j.jcmgh.2024.02.015},
pmid = {38417701}
}
@article{lin275127,
title = {Study of the intestinal microbiota composition and the effect of treatment with intensive chemotherapy in patients recovered from acute leukemia.},
author = {Vazquez X, Lumbreras-Iglesias P, Rodicio MR, Fernandez J, Bernal T, Moreno AF, de Ugarriza PL, Fernandez-Verdugo A, Margolles A, Sabater C.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-56054-w},
pmid = {38454103}
}
@article{lin275170,
title = {In-depth multiomic characterization of the effects of obesity in high-fat diet-fed mice.},
author = {Li B, Chen J, Ou X, Liu X, Xu Z, Xiang X, Yang Y, Wang Q.},
journal = {FEBS Open Bio},
year = {2024},
doi = {10.1002/2211-5463.13788},
pmid = {38479983}
}
@article{lin275166,
title = {Characterization of the gut microbiota and fecal and blood metabolomes under various factors in urban children from Northwest China.},
author = {Yang Y, Chen J, Gao H, Cui M, Zhu M, Xiang X, Wang Q.},
journal = {Front Cell Infect Microbiol},
year = {2024},
doi = {10.3389/fcimb.2024.1374544},
pmid = {38585649}
}
@article{lin275237,
title = {Single-cell transcriptomics unveiled that early life BDE-99 exposure reprogrammed the gut-liver axis to promote a proinflammatory metabolic signature in male mice at late adulthood.},
author = {Lim JJ, Goedken M, Jin Y, Gu H, Cui JY.},
journal = {Toxicol Sci},
year = {2024},
doi = {10.1093/toxsci/kfae047},
pmid = {38648751}
}
@article{lin275216,
title = {Gut microbiome composition and metabolic activity in women with diverticulitis.},
author = {Ma W, Wang Y, Nguyen LH, Mehta RS, Ha J, Bhosle A, Mclver LJ, Song M, Clish CB, Strate LL, Huttenhower C, Chan AT.},
journal = {Nat Commun},
year = {2024},
doi = {10.1038/s41467-024-47859-4},
pmid = {38684664}
}
@article{lin275121,
title = {Distinct anal microbiome is correlated with anal cancer precursors in MSM with HIV.},
author = {Brickman CE, Agnello M, Imam N, Camejo P, Pino R, Carroll LN, Chein A, Palefsky JM.},
journal = {AIDS},
year = {2024},
doi = {10.1097/qad.0000000000003920},
pmid = {38691018}
}
@article{lin275190,
title = {Integrative analysis of single-cell RNA-seq and gut microbiome metabarcoding data elucidates macrophage dysfunction in mice with DSS-induced ulcerative colitis.},
author = {Hong D, Kim HK, Yang W, Yoon C, Kim M, Yang CS, Yoon S.},
journal = {Commun Biol},
year = {2024},
doi = {10.1038/s42003-024-06409-w},
pmid = {38879692}
}
@article{lin275213,
title = {Beneficial metabolic effects of PAHSAs depend on the gut microbiota in diet-induced obese mice but not in chow-fed mice.},
author = {Lee J, Wellenstein K, Rahnavard A, Nelson AT, Holter MM, Cummings BP, Yeliseyev V, Castoldi A, Clish CB, Bry L, Siegel D, Kahn BB.},
journal = {Proc Natl Acad Sci U S A},
year = {2024},
doi = {10.1073/pnas.2318691121},
pmid = {38968121}
}
@article{lin275136,
title = {The Role of the Intestinal Flora and Its Derivatives in Neurocognitive Disorders: A Narrative Review from Surgical Perspective.},
author = {Huang J, Qin TS, Bo Y, Li YJ, Liu RS, Yu Y, Li XD, He JC, Ma AX, Tao DP, Ren WJ, Peng J.},
journal = {Mol Neurobiol},
year = {2025},
doi = {10.1007/s12035-024-04322-1},
pmid = {38985257}
}
@article{lin275130,
title = {IRAK4 is an immunological checkpoint in neuropsychiatric systemic lupus erythematosus.},
author = {Menoret A, Agliano F, Karginov TA, Hu X, Vella AT.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-63567-x},
pmid = {39014006}
}
@article{lin275231,
title = {A history of repeated antibiotic usage leads to microbiota-dependent mucus defects.},
author = {Krigul KL, Feeney RH, Wongkuna S, Aasmets O, Holmberg SM, Andreson R, Puertolas-Balint F, Pantiukh K, Sootak L, Org T, Tenson T, Org E, Schroeder BO.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2377570},
pmid = {39034613}
}
@article{lin275179,
title = {Preventive effects of a nutraceutical mixture of berberine, citrus and apple extracts on metabolic disturbances in Zucker fatty rats.},
author = {Siliman Misha M, Destrumelle S, Le Jan D, Mansour NM, Fizanne L, Ouguerram K, Desfontis JC, Mallem MY.},
journal = {PLoS One},
year = {2024},
doi = {10.1371/journal.pone.0306783},
pmid = {39058681}
}
@article{lin275113,
title = {Gut microbiome, and immune cells mediated effect on depression: A two-step, two-sample Mendelian randomization analysis.},
author = {Chen C, Zhang D, Wu D, Chen F, Li Z, Hu Y.},
journal = {Exp Gerontol},
year = {2024},
doi = {10.1016/j.exger.2024.112530},
pmid = {39059516}
}
@article{lin275220,
title = {MS-20 enhances the gut microbiota-associated antitumor effects of anti-PD1 antibody.},
author = {Lee PJ, Hung CM, Yang AJ, Hou CY, Chou HW, Chang YC, Chu WC, Huang WY, Kuo WC, Yang CC, Lin KI, Hung KH, Chang LC, Lee KY, Kuo HP, Lu KM, Lai HC, Kuo ML, Chen WJ.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2380061},
pmid = {39078050}
}
@article{lin275219,
title = {The fecal microbiota of patients with primary biliary cholangitis (PBC) causes PBC-like liver lesions in mice and exacerbates liver damage in a mouse model of PBC.},
author = {Jiang H, Yu Y, Hu X, Du B, Shao Y, Wang F, Chen L, Yan R, Li L, Lv L.},
journal = {Gut Microbes},
year = {2024},
doi = {10.1080/19490976.2024.2383353},
pmid = {39105259}
}
@article{lin275175,
title = {Spatial analysis of murine microbiota and bile acid metabolism during amoxicillin treatment.},
author = {Beekman CN, Penumutchu S, Peterson R, Han G, Belenky M, Hasan MH, Belenky A, Beura LK, Belenky P.},
journal = {Cell Rep},
year = {2024},
doi = {10.1016/j.celrep.2024.114572},
pmid = {39116202}
}
@article{lin275178,
title = {Effects of Early Life Exposures to the Aryl Hydrocarbon Receptor Ligand TCDF on Gut Microbiota and Host Metabolic Homeostasis in C57BL/6J Mice.},
author = {Tian Y, Rimal B, Bisanz JE, Gui W, Wolfe TM, Koo I, Murray IA, Nettleford SK, Yokoyama S, Dong F, Koshkin S, Prabhu KS, Turnbaugh PJ, Walk ST, Perdew GH, Patterson AD.},
journal = {Environ Health Perspect},
year = {2024},
doi = {10.1289/ehp13356},
pmid = {39140734}
}
@article{lin275184,
title = {Immunomodulatory Effects of a Probiotic Mixture: Alleviating Colitis in a Mouse Model through Modulation of Cell Activation Markers and the Gut Microbiota.},
author = {Ryu HM, Islam SMS, Riaz B, Sayeed HM, Choi B, Sohn S.},
journal = {Int J Mol Sci},
year = {2024},
doi = {10.3390/ijms25168571},
pmid = {39201260}
}
@article{lin275160,
title = {Specific Gut Microbiome Signatures in Children with Cow's Milk Allergy.},
author = {Moriki D, Leon ED, Garcia-Gamero G, Jimenez-Hernandez N, Artacho A, Pons X, Koumpagioti D, Dinopoulos A, Papaevangelou V, Priftis KN, Douros K, Francino MP.},
journal = {Nutrients},
year = {2024},
doi = {10.3390/nu16162752},
pmid = {39203888}
}
@article{lin275201,
title = {Disruption of the intestinal clock drives dysbiosis and impaired barrier function in colorectal cancer.},
author = {Fellows RC, Chun SK, Larson N, Fortin BM, Mahieu AL, Song WA, Seldin MM, Pannunzio NR, Masri S.},
journal = {Sci Adv},
year = {2024},
doi = {10.1126/sciadv.ado1458},
pmid = {39331712}
}
@article{lin275111,
title = {Multifactorial effects of probiotic Parasutterella excrementihominis on gestational inflammation, offspring behaviour and prenatal-stress induced disruptions in tryptophan metabolism.},
author = {Galley JD, Rajasekera TA, Bennouna DJ, Batabyal A, Verosky B, Woodke S, Stokes J, Brown AK, Murthy S, Kopec RE, Gur TL.},
journal = {Benef Microbes},
year = {2024},
doi = {10.1163/18762891-bja00047},
pmid = {39612930}
}
@article{lin275169,
title = {Comparative effects of non-fermented and Lacticaseibacillus paracasei-fermented pomelo juice on gut microbiota composition and short-chain fatty acid production: An in vitro colonic model.},
author = {Balmori V, Marnpae M, Kamonsuwan K, Chusak C, Nungarlee U, Sivapornnukul P, Chanchaem P, Payungporn S, Charoensiddhi S, Suantawee T, Thilavech T, Adisakwattana S.},
journal = {Food Chem X},
year = {2024},
doi = {10.1016/j.fochx.2024.102041},
pmid = {39697599}
}
@article{lin275173,
title = {CRISPR-Cas spacer acquisition is a rare event in human gut microbiome.},
author = {Zhang AN, Gaston JM, Cardenas P, Zhao S, Gu X, Alm EJ.},
journal = {Cell Genom},
year = {2025},
doi = {10.1016/j.xgen.2024.100725},
pmid = {39719706}
}
@article{lin275188,
title = {Associations of gut microbiota with disease development, disease activity, and therapeutic effects in patients with systemic lupus erythematosus.},
author = {Nishio J, Sato H, Watanabe E, Masuoka H, Aoki K, Kawazoe M, Wakiya R, Yamada S, Muraoka S, Masuoka S, Hayashi T, Mizutani S, Yamada Z, Koshiba K, Irita I, Kanaji M, Furukawa K, Yajima N, Dobashi H, Hirose W, Ishii Y, Suda W, Nanki T.},
journal = {Sci Rep},
year = {2024},
doi = {10.1038/s41598-024-83835-0},
pmid = {39738678}
}
@article{lin275109,
title = {The direct and indirect inhibition of proinflammatory adipose tissue macrophages by acarbose in diet-induced obesity.},
author = {Li X, Zheng S, Xu H, Zhang Z, Han X, Wei Y, Jin H, Du X, Xu H, Li M, Zhang Z, Wang S, Sun G, Zhang D.},
journal = {Cell Rep Med},
year = {2025},
doi = {10.1016/j.xcrm.2024.101883},
pmid = {39742869}
}
@article{lin275128,
title = {Identifying fecal microbiota signatures of colorectal cancer in a Vietnamese cohort.},
author = {Nhung PTT, Le HTT, Nguyen QH, Huyen DT, Quyen DV, Song LH, Van Thuan T, Tran TTT.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1388740},
pmid = {39777151}
}
@article{lin275152,
title = {Klebsiella pneumoniae employs a type VI secretion system to overcome microbiota-mediated colonization resistance.},
author = {Bray AS, Broberg CA, Hudson AW, Wu W, Nagpal RK, Islam M, Valencia-Bacca JD, Shahid F, Hernandez GE, Nutter NA, Walker KA, Bennett EF, Young TM, Barnes AJ, Ornelles DA, Miller VL, Zafar MA.},
journal = {Nat Commun},
year = {2025},
doi = {10.1038/s41467-025-56309-8},
pmid = {39843522}
}
@article{lin275162,
title = {Effects of residual black wolfberry fruit on growth performance, rumen fermentation parameters, microflora and economic benefits of fattening sheep.},
author = {Hou L, Duan P, Yang Y, Shah AM, Li J, Xu C, Guo T.},
journal = {Front Vet Sci},
year = {2024},
doi = {10.3389/fvets.2024.1528126},
pmid = {39867601}
}
@article{lin275125,
title = {Gut microbiota and risk of iron deficiency anemia: A two-sample Mendelian randomization study.},
author = {Lei W, Liu Z, Lai HP, Fu R.},
journal = {Medicine (Baltimore)},
year = {2025},
doi = {10.1097/md.0000000000041617},
pmid = {39993092}
}
@article{lin275161,
title = {Synergistic Effects of Probiotics and Lifestyle Interventions on Intestinal Microbiota Composition and Clinical Outcomes in Obese Adults.},
author = {Florencio GP, Xavier AR, Natal ACC, Sadoyama LP, Pena GDG, Menezes RP, Sadoyama Leal G, Patrizzi LJ, Roder DVDB.},
journal = {Metabolites},
year = {2025},
doi = {10.3390/metabo15020070},
pmid = {39997695}
}
@article{lin275120,
title = {Gut microbiota mediates the pro-pyroptosis effect of xierezhuyubuxu decoction in hepatocellular carcinoma.},
author = {Zeng Z, Feng M, He F, Zhang E, Li X, Cao Z.},
journal = {Front Microbiol},
year = {2024},
doi = {10.3389/fmicb.2024.1481111},
pmid = {40046008}
}
@article{lin275149,
title = {Comparison of naturalization mouse model setups uncover distinct effects on intestinal mucosa depending on microbial experience.},
author = {Arnesen H, Birkeland S, Stendahl H, Neuhaus K, Masopust D, Boysen P, Carlsen H.},
journal = {Discov Immunol},
year = {2025},
doi = {10.1093/discim/kyaf002},
pmid = {40065807}
}
@article{lin275117,
title = {Gut microbiota is associated with persistence of longer-term BNT162b2 vaccine immunogenicity.},
author = {Ng HY, Liao Y, Cheung CL, Zhang R, Chan KH, Seto WK, Leung WK, Hung IFN, Lam TTY, Cheung KS.},
journal = {Front Immunol},
year = {2025},
doi = {10.3389/fimmu.2025.1534787},
pmid = {40083550}
}
@article{lin275147,
title = {Effect of the gut microbiome, skin microbiome, plasma metabolome, white blood cells subtype, immune cells, inflammatory proteins, and inflammatory cytokines on asthma: a two-sample Mendelian randomized study and mediation analysis.},
author = {Guo W, Hong E, Ma H, Wang J, Wang Q.},
journal = {Front Immunol},
year = {2025},
doi = {10.3389/fimmu.2025.1436888},
pmid = {40191192}
}
@article{lin275116,
title = {Unraveling the interplay between mesenchymal stem cells, gut microbiota, and systemic sclerosis: therapeutic implications.},
author = {Zhang L, Wang H, Zhao L, Zhang J, Sun W, Chu J, Zhao H, Yang C, Yan S, Chen X, Xu D.},
journal = {Microbiol Spectr},
year = {2025},
doi = {10.1128/spectrum.01576-24},
pmid = {40272189}
}
@article{lin275150,
title = {Investigating Plasma Metabolomics and Gut Microbiota Changes Associated With Parkinson Disease: A Focus on Caffeine Metabolism.},
author = {Chen CC, Chiu JY, Tan AH, Toh TS, Lim SY, Tan EK, Pettersson S, Hsu CC, Liou JM, Wu MS, Hsu CL, Lin CH.},
journal = {Neurology},
year = {2025},
doi = {10.1212/wnl.0000000000213592},
pmid = {40273394}
}
@article{lin275148,
title = {Temporal network analysis of gut microbiota unveils aging trajectories associated with colon cancer.},
author = {Chen Z, Zhang Z, Nie BN, Huang W, Zhu Y, Zhang L, Xu M, Wang M, Yuan C, Liu N, Wang X, Tian J, Ba Q, Wang Z.},
journal = {mSystems},
year = {2025},
doi = {10.1128/msystems.01188-24},
pmid = {40298386}
}
@article{lin275133,
title = {A Comparative Assessment of Flaxseed (Linum usitatissimum L.) and Chia Seed (Salvia hispanica L.) in Modulating Fecal Microbiota Composition and Function In Vitro.},
author = {Arioglu-Tuncil S.},
journal = {Food Sci Nutr},
year = {2025},
doi = {10.1002/fsn3.70243},
pmid = {40321609}
}
@article{lin275145,
title = {Enterotype-stratified gut microbial signatures in MASLD and cirrhosis based on integrated microbiome data.},
author = {Yuan H, Zhou J, Wu X, Wang S, Park S.},
journal = {Front Microbiol},
year = {2025},
doi = {10.3389/fmicb.2025.1568672},
pmid = {40444006}
}
@article{lin275232,
title = {Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer.},
author = {Piccinno G, Thompson KN, Manghi P, Ghazi AR, Thomas AM, Blanco-Miguez A, Asnicar F, Mladenovic K, Pinto F, Armanini F, Puncochar M, Piperni E, Heidrich V, Fackelmann G, Ferrero G, Tarallo S, Nguyen LH, Yan Y, Keles NA, Tuna BG, Vymetalkova V, Trompetto M, Liska V, Hucl T, Vodicka P, Bencsikova B, Carnogurska M, Popovici V, Marmorino F, Cremolini C, Pardini B, Cordero F, Song M, Chan AT, Derosa L, Zitvogel L, Huttenhower C, Naccarati A, Budinska E, Segata N.},
journal = {Nat Med},
year = {2025},
doi = {10.1038/s41591-025-03693-9},
pmid = {40461820}
}
@article{lin275244,
title = {Lycium b arbarum's diabetes secrets: A comprehensive review of cellular, molecular, and epigenetic targets with immune modulation and microbiome influence.},
author = {Ali Z, Ayub A, Lin Y, Anis S, Khan I, Younas S, Tahir RA, Wang S, Li J.},
journal = {J Pharm Anal},
year = {2025},
doi = {10.1016/j.jpha.2024.101130},
pmid = {40496070}
}
@article{lin275132,
title = {Fecal or bacterial transplantation in mice transfer environment-induced brain plasticity and associated behavioral changes.},
author = {Marrocco F, Khan R, Reccagni A, Lin X, Delli Carpini M, Iebba V, D'Alessandro G, Limatola C.},
journal = {Front Physiol},
year = {2025},
doi = {10.3389/fphys.2025.1572854},
pmid = {40519780}
}
@article{lin275165,
title = {Multi-omics surveillance of antimicrobial resistance in the pig gut microbiome.},
author = {Guitart-Matas J, Vera-Ponce de Leon A, Pope PB, Hvidsten TR, Fraile L, Ballester M, Ramayo-Caldas Y, Migura-Garcia L.},
journal = {Anim Microbiome},
year = {2025},
doi = {10.1186/s42523-025-00418-8},
pmid = {40528272}
}
@article{lin275122,
title = {Roles of Gut Microbiota and Associated Metabolites in Clostridioides difficile Infection.},
author = {Gao Y, Ma J, Wang K, Ma K, Zhao W, Su J, Ma L.},
journal = {Pol J Microbiol},
year = {2025},
doi = {10.33073/pjm-2025-017},
pmid = {40544514}
}
@article{lin275250,
title = {An adaptive AI-based virtual reality sports system for adolescents with excess body weight: a randomized controlled trial.},
author = {Wang J, Qin Y, Wu Q, Zeng D, Gao X, Wang Q, Li Z, Ni Y, Li H, Zhang P, Guo J, Ma W, Maitusun M, Jin X, Chen M, Zhu L, Lu Q, Chen Q, Wu Y, Lin C, Han R, Cheng D, Ni J, Wang X, Yao F, Zhuang J, Xia J, Liu D, Lu Y, Kang P, Yu S, Chen A, Zhang Y, Li Q, Ge W, Long X, Jiang Z, Guan Z, Jin Z, Jin P, Li T, Shu J, Yang J, Wang J, Jiang N, Qian J, Jung Y, Zhang H, Yang Q, Ma L, Wu X, Huang X, Si D, Ren J, Qiao H, Guo Y, Huang Z, Wang W, Deng W, Bi L, Zhao D, Li Y, Lau RWH, Tham YC, Ma X, Ma J, Shen D, Zhang S, Guan H, Zou W, Guo M, Guan X, Yang X, Xu A, Wu J, Panagiotou G, Tse MA, Kim J, Wu E, Thalmann D, Thalmann NM, Fregni F, Wong TY, Jia W, Zeng R, Lim CT, Sheng B, Li H.},
journal = {Nat Med},
year = {2025},
doi = {10.1038/s41591-025-03724-5},
pmid = {40551019}
}
@article{lin275138,
title = {Mendelian randomization study revealed a gut microbiota-immune system-kidney junction axis in chronic kidney disease.},
author = {Tan J, Xiong Z, Yu S, Lu W, Yu L.},
journal = {Sci Rep},
year = {2025},
doi = {10.1038/s41598-025-05941-x},
pmid = {40596241}
}
@article{lin275114,
title = {Exploring the role of gut microbiota in rheumatoid arthritis: the effects of diet and drug supplementation.},
author = {Genc DE, Ozbek O, Ulgen KO.},
journal = {BMC Rheumatol},
year = {2025},
doi = {10.1186/s41927-025-00541-8},
pmid = {40598685}
}
@article{lin275167,
title = {Structure analysis of human gut microbiota associated with single-celled gut protists using Next-Generation Sequencing of 16S and 18S rRNA genes.},
author = {Belkessa S, Pasolli E, Medrouh B, Berg RPKD, Andersen LO', Nielsen HV, Stensvold CR.},
journal = {Comput Struct Biotechnol J},
year = {2025},
doi = {10.1016/j.csbj.2025.06.006},
pmid = {40688000}
}
@article{lin275182,
title = {Uropathogenic Escherichia coli niche occupancy determines the effects of mucosal vaccine against FimH.},
author = {Santiago-Borges JM, Rosen AL, Hernandez-Leyva A, Tomera CP, Lint MA, Paharik AE, Vanyo V, Pinkner JS, Dodson KW, Chen SL, Hsieh CS, Hultgren SJ, Kau AL.},
journal = {Cell Rep},
year = {2025},
doi = {10.1016/j.celrep.2025.116077},
pmid = {40751913}
}
@article{lin275159,
title = {Exploring the Microbial Peptides Derived from the Human Gut Microbiota to Regulate Class B GPCRS Using an In Silico Approach.},
author = {S S, Nayak P, Pal K.},
journal = {ACS Omega},
year = {2025},
doi = {10.1021/acsomega.5c03268},
pmid = {40787310}
}
@article{lin275189,
title = {Temporal response patterns of human gut microbiota to dietary fiber.},
author = {Lin X, Wang C, Liu B, Zhu Y, Zhai R, Zhang C.},
journal = {Imeta},
year = {2025},
doi = {10.1002/imt2.70046},
pmid = {40860439}
}
@article{lin275144,
title = {A metagenome-wide association study of gut microbiota in hepatitis B virus-related cirrhosis in northwest China.},
author = {Feng M, Chai Y, Li J, Wang Q, Zhang D.},
journal = {Front Genet},
year = {2025},
doi = {10.3389/fgene.2025.1619911},
pmid = {40909440}
}
@article{lin275110,
title = {Clostridium butyricum-altered lung microbiome is associated with enhanced anti-influenza effects via G-protein-coupled receptor120.},
author = {Hagihara M, Yamashita M, Ariyoshi T, Minemura A, Yoshida C, Higashi S, Oka K, Takahashi M, Ota A, Maenaka A, Iwasaki K, Hirai J, Shibata Y, Umemura T, Mori T, Kato H, Asai N, Mikamo H.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.113502},
pmid = {41035679}
}
@article{lin275112,
title = {MediaMatch: Prediction of Bacterial Growth on Different Culture Media Using the XGBoost Algorithm.},
author = {Liu J, Xu G, Liu W, Liu T, Li Y, Tu T, Luo H, Wu N, Yao B, Tian J, Zhang J, Guan F.},
journal = {Microb Biotechnol},
year = {2025},
doi = {10.1111/1751-7915.70245},
pmid = {41045019}
}
@article{lin275123,
title = {Can physical exercise modify intestinal integrity and gut microbiota composition? A systematic review of in vivo studies.},
author = {Pereira SMS, Jose VPBS, da Silva A, Martins KVC, Leite LB, Forte P, Natali AJ, Martino HSD, Lucia CMD, Bressan J.},
journal = {Biol Sport},
year = {2025},
doi = {10.5114/biolsport.2025.148545},
pmid = {41048220}
}
@article{lin275134,
title = {Bifidobacterium adolescentis CCFM1447 effectively alleviates osteoporosis by enriching intestinal flora capable of vitamin D conversion.},
author = {Yu X, Tian G, Wang Y, Li L, Huang L, Zhao Y, Feng L, Zhao Y, Fang H, Lu W, Lu S, Wang H.},
journal = {Front Nutr},
year = {2025},
doi = {10.3389/fnut.2025.1647671},
pmid = {41064290}
}
@article{lin275119,
title = {Multiomics Integration Reveals Microbial Gene Interactions Shaping Host Responses in a DSS-Induced Colitis Mouse Model.},
author = {Hong HH, Lee SY, Jang DH, Ju SE, Shim JE, Kim TH, Kang HS, Kim SM.},
journal = {J Microbiol Biotechnol},
year = {2025},
doi = {10.4014/jmb.2507.07010},
pmid = {41110987}
}
@article{lin275143,
title = {Roseburia hominis enriched by baicalin reverses the non-response to metformin via upregulating linolenic acid metabolism.},
author = {Miao Z, Long J, Huang B, Yan D, Wang A.},
journal = {iScience},
year = {2025},
doi = {10.1016/j.isci.2025.113892},
pmid = {41312383}
}